AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428880 MtrunA17_Chr5g0446311 99.340 303 2 0 1 303 1 303 0.0 601
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428880 AT3G18790.1 76.238 303 69 2 1 303 1 300 1.91e-149 421

Find 100 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGCTTATTATGGTTAT+AGG 0.163690 tig0026416:-15926 Msa1428880:CDS
AGGATTAATGCTGCTTATTA+TGG 0.220615 tig0026416:-15933 Msa1428880:CDS
AGAAAAGGACGGCGTTCTTT+AGG 0.280108 tig0026416:+16338 None:intergenic
TGCTGCTTATTATGGTTATA+GGG 0.299741 tig0026416:-15925 Msa1428880:CDS
GGATGATGAAGATGGGATAT+TGG 0.324169 tig0026416:-15904 Msa1428880:CDS
GGGCCGGGGTATAGATATTT+TGG 0.329847 tig0026416:-16044 Msa1428880:CDS
GAGGGAGATGAGGGAGAGGT+TGG 0.336839 tig0026416:-15691 Msa1428880:CDS
TTCGTTGAGGTCACGGCATT+CGG 0.348118 tig0026416:+16310 None:intergenic
GCAGAATGCCTCGCATAATT+CGG 0.368301 tig0026416:+16122 None:intergenic
GTATGTCAGTGATGAGCTTA+TGG 0.373343 tig0026416:-15568 Msa1428880:CDS
GAGAGGAGAATTGTTGAGCT+TGG 0.400059 tig0026416:-16149 Msa1428880:CDS
GGGAGAGGTTGGATAGGATA+AGG 0.401870 tig0026416:-15827 Msa1428880:CDS
TTCTCAATCTCTTTCTCATC+CGG 0.403897 tig0026416:+15630 None:intergenic
CAGCAAATCATGCGCGAAAT+CGG 0.407567 tig0026416:-16272 Msa1428880:CDS
GATTTGCTGACGCCATTTGT+CGG 0.414253 tig0026416:+16286 None:intergenic
TGTTGTGCATGTGCCATTGC+CGG 0.419890 tig0026416:-15649 Msa1428880:CDS
ATTGGAGCGGGTTGAGGCAC+CGG 0.422542 tig0026416:-15886 Msa1428880:CDS
TGAGAAAGAGATTGAGAAGA+TGG 0.425940 tig0026416:-15625 Msa1428880:CDS
TTCTGCGAAAATGACTGATT+TGG 0.430591 tig0026416:-16105 Msa1428880:CDS
AGCCGCCAGAGTTGAGGAAA+CGG 0.430737 tig0026416:-15980 Msa1428880:CDS
AGAGGTTGGATGAGAAAGAA+AGG 0.431855 tig0026416:-15677 Msa1428880:CDS
GATGAAGGAGAGGGAGATGA+GGG 0.439819 tig0026416:-15700 Msa1428880:CDS
GGTTGAGGAGTGGGAGAGGT+TGG 0.442822 tig0026416:-15838 Msa1428880:CDS
TATGAGGCGGGAGGCGGTTG+AGG 0.445034 tig0026416:-15853 Msa1428880:CDS
GCGGGAGGCGGTTGAGGAGT+GGG 0.448024 tig0026416:-15847 Msa1428880:CDS
GGAGGAAGAGGATGTGGTGG+AGG 0.450447 tig0026416:-15730 Msa1428880:CDS
AGGATGTGGTGGAGGAAGAG+AGG 0.451153 tig0026416:-15722 Msa1428880:CDS
AGGAAGAGAGGATGAAGGAG+AGG 0.452014 tig0026416:-15710 Msa1428880:CDS
TCTGAATCTCGGCGACTTTG+CGG 0.453679 tig0026416:+16249 None:intergenic
CGAGATATGATATTTATAAG+AGG 0.453995 tig0026416:-15953 Msa1428880:CDS
GCGGGTTGAGGCACCGGCTG+AGG 0.458475 tig0026416:-15880 Msa1428880:CDS
CTAGGAAGGCTGTGAGGAGT+GGG 0.459243 tig0026416:-15797 Msa1428880:CDS
ACCTCAACGAAGCCGACAAA+TGG 0.465609 tig0026416:-16298 Msa1428880:CDS
GGATGAAGGAGAGGGAGATG+AGG 0.468850 tig0026416:-15701 Msa1428880:CDS
ATAGGATAAGGAAGGAAGCT+AGG 0.470791 tig0026416:-15815 Msa1428880:CDS
AGGAGAGGGAGATGAGGGAG+AGG 0.482030 tig0026416:-15695 Msa1428880:CDS
GAGGAGTGGGGAGGTTGTTG+AGG 0.482912 tig0026416:-15784 Msa1428880:CDS
TGTCGGCTTCGTTGAGGTCA+CGG 0.485850 tig0026416:+16303 None:intergenic
TGGGATATTGGAGCGGGTTG+AGG 0.487195 tig0026416:-15892 Msa1428880:CDS
CGCCTCATACATTCCTCAGC+CGG 0.489139 tig0026416:+15867 None:intergenic
AGGCGGTTGAGGAGTGGGAG+AGG 0.491691 tig0026416:-15842 Msa1428880:CDS
TAATTTCGTCGTTGAGATCA+CGG 0.493082 tig0026416:+16201 None:intergenic
GGTTATAGGGATGATGAAGA+TGG 0.495151 tig0026416:-15912 Msa1428880:CDS
TGGTGCGGCGAAGAAATTGC+CGG 0.497574 tig0026416:-16024 Msa1428880:CDS
AGGAGTGGGAGAGGTTGGAT+AGG 0.498229 tig0026416:-15833 Msa1428880:CDS
GGTGCGGCGAAGAAATTGCC+GGG 0.501210 tig0026416:-16023 Msa1428880:CDS
ATCTCTTTCTCATCCGGCAA+TGG 0.505971 tig0026416:+15636 None:intergenic
AGAAGACGGATTTGTTGAAT+CGG 0.512072 tig0026416:-15590 Msa1428880:CDS
CGGCATTCGGAAGCGAGAAA+AGG 0.513747 tig0026416:+16323 None:intergenic
GGTGGAGGAAGAGAGGATGA+AGG 0.519325 tig0026416:-15715 Msa1428880:CDS
TGAGGAGGAAGAGGATGTGG+TGG 0.519928 tig0026416:-15733 Msa1428880:CDS
GGAAGAGAGGATGAAGGAGA+GGG 0.524110 tig0026416:-15709 Msa1428880:CDS
ATGAAGATGGGATATTGGAG+CGG 0.526437 tig0026416:-15899 Msa1428880:CDS
GTTCCTAACCCTAGTGGAAG+GGG 0.527308 tig0026416:-16065 Msa1428880:CDS
GGCGGGAGGCGGTTGAGGAG+TGG 0.530068 tig0026416:-15848 Msa1428880:CDS
GTCCTCCGTTTCCTCAACTC+TGG 0.530903 tig0026416:+15975 None:intergenic
GAGATTCAGAACGAAGGTCT+CGG 0.533692 tig0026416:-16236 Msa1428880:CDS
GATAAGGAAGGAAGCTAGGA+AGG 0.534959 tig0026416:-15811 Msa1428880:CDS
GATACTTCATGAGGAGGAAG+AGG 0.539895 tig0026416:-15742 Msa1428880:CDS
GCGAAAATGACTGATTTGGA+TGG 0.540673 tig0026416:-16101 Msa1428880:CDS
TTGAGGTTACTGCGGCTACG+AGG 0.542022 tig0026416:-15767 Msa1428880:CDS
GCTAGGAAGGCTGTGAGGAG+TGG 0.544777 tig0026416:-15798 Msa1428880:CDS
CACCGGCTGAGGAATGTATG+AGG 0.544927 tig0026416:-15869 Msa1428880:CDS
TTGAGAAGCCGCCAGAGTTG+AGG 0.545601 tig0026416:-15986 Msa1428880:CDS
TCATGAGGAGGAAGAGGATG+TGG 0.548901 tig0026416:-15736 Msa1428880:CDS
GGCTGAGGAATGTATGAGGC+GGG 0.550661 tig0026416:-15865 Msa1428880:CDS
GTTATAGGGATGATGAAGAT+GGG 0.553326 tig0026416:-15911 Msa1428880:CDS
GAGGTTGGATAGGATAAGGA+AGG 0.556697 tig0026416:-15823 Msa1428880:CDS
ATGTTCCTAACCCTAGTGGA+AGG 0.561136 tig0026416:-16067 Msa1428880:CDS
GAGGTTGGATGAGAAAGAAA+GGG 0.566400 tig0026416:-15676 Msa1428880:CDS
GGAATGTATGAGGCGGGAGG+CGG 0.568894 tig0026416:-15859 Msa1428880:CDS
AGGAGAATTGTTGAGCTTGG+AGG 0.570345 tig0026416:-16146 Msa1428880:CDS
GCCATTTGTCGGCTTCGTTG+AGG 0.579484 tig0026416:+16297 None:intergenic
GGAGGAGCAGACTGAAGCTA+AGG 0.586889 tig0026416:-15547 Msa1428880:CDS
TGAAGATGGGATATTGGAGC+GGG 0.592242 tig0026416:-15898 Msa1428880:CDS
GAGACCTTCGTTCTGAATCT+CGG 0.596536 tig0026416:+16238 None:intergenic
GTTGATGTTCCTAACCCTAG+TGG 0.600173 tig0026416:-16071 Msa1428880:CDS
TGTTCCTAACCCTAGTGGAA+GGG 0.609021 tig0026416:-16066 Msa1428880:CDS
TAGGAAGGCTGTGAGGAGTG+GGG 0.611922 tig0026416:-15796 Msa1428880:CDS
CGAAAATGACTGATTTGGAT+GGG 0.613601 tig0026416:-16100 Msa1428880:CDS
CGGCTGAGGAATGTATGAGG+CGG 0.623295 tig0026416:-15866 Msa1428880:CDS
TGAGGTTACTGCGGCTACGA+GGG 0.625438 tig0026416:-15766 Msa1428880:CDS
CTCCGTTTCCTCAACTCTGG+CGG 0.627535 tig0026416:+15978 None:intergenic
GTGCGGCGAAGAAATTGCCG+GGG 0.629933 tig0026416:-16022 Msa1428880:CDS
ATTCGGAAGCGAGAAAAGGA+CGG 0.632653 tig0026416:+16327 None:intergenic
CGTCGTTGAGATCACGGAGA+CGG 0.644808 tig0026416:+16207 None:intergenic
GAAGGCTGTGAGGAGTGGGG+AGG 0.648471 tig0026416:-15793 Msa1428880:CDS
GAGGGAGATACTTCATGAGG+AGG 0.648473 tig0026416:-15748 Msa1428880:CDS
GCACCAAAATATCTATACCC+CGG 0.652148 tig0026416:+16041 None:intergenic
GGTGTTGCAGAAGAAGAAGA+CGG 0.654804 tig0026416:-15604 Msa1428880:CDS
TTCCTAACCCTAGTGGAAGG+GGG 0.659153 tig0026416:-16064 Msa1428880:CDS
TACGAGGGAGATACTTCATG+AGG 0.667838 tig0026416:-15751 Msa1428880:CDS
TGAGGAATGTATGAGGCGGG+AGG 0.670206 tig0026416:-15862 Msa1428880:CDS
CGCCAGAGTTGAGGAAACGG+AGG 0.674224 tig0026416:-15977 Msa1428880:CDS
TGCGGCGAAGAAATTGCCGG+GGG 0.684263 tig0026416:-16021 Msa1428880:CDS
GTCGCCGAGATTCAGAACGA+AGG 0.688122 tig0026416:-16242 Msa1428880:CDS
TTGGAGGACCGAATTATGCG+AGG 0.690784 tig0026416:-16130 Msa1428880:CDS
TGTCAGTGATGAGCTTATGG+AGG 0.691036 tig0026416:-15565 Msa1428880:CDS
GGAGGTTGTTGAGGTTACTG+CGG 0.696634 tig0026416:-15775 Msa1428880:CDS
AGGAAGCTAGGAAGGCTGTG+AGG 0.701271 tig0026416:-15803 Msa1428880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CGAGATATGATATTTATAAG+AGG - tig0026416:15984-16003 Msa1428880:CDS 25.0%
! CGAGATATGATATTTATAAG+AGG - tig0026416:15984-16003 Msa1428880:CDS 25.0%
! AGGATTAATGCTGCTTATTA+TGG - tig0026416:16004-16023 Msa1428880:CDS 30.0%
! ATGCTGCTTATTATGGTTAT+AGG - tig0026416:16011-16030 Msa1428880:CDS 30.0%
! TGCTGCTTATTATGGTTATA+GGG - tig0026416:16012-16031 Msa1428880:CDS 30.0%
! AGGATTAATGCTGCTTATTA+TGG - tig0026416:16004-16023 Msa1428880:CDS 30.0%
! ATGCTGCTTATTATGGTTAT+AGG - tig0026416:16011-16030 Msa1428880:CDS 30.0%
! TGCTGCTTATTATGGTTATA+GGG - tig0026416:16012-16031 Msa1428880:CDS 30.0%
! CTTCTTTTCTTCAGCTTTCA+TGG + tig0026416:15576-15595 None:intergenic 35.0%
TAATTTCGTCGTTGAGATCA+CGG + tig0026416:15739-15758 None:intergenic 35.0%
TCATTCGTGAAAAATCGCAT+TGG - tig0026416:15765-15784 Msa1428880:CDS 35.0%
CATTCGTGAAAAATCGCATT+GGG - tig0026416:15766-15785 Msa1428880:CDS 35.0%
TTCTGCGAAAATGACTGATT+TGG - tig0026416:15832-15851 Msa1428880:CDS 35.0%
!! CGAAAATGACTGATTTGGAT+GGG - tig0026416:15837-15856 Msa1428880:CDS 35.0%
GTTATAGGGATGATGAAGAT+GGG - tig0026416:16026-16045 Msa1428880:CDS 35.0%
TTCTCAATCTCTTTCTCATC+CGG + tig0026416:16310-16329 None:intergenic 35.0%
TGAGAAAGAGATTGAGAAGA+TGG - tig0026416:16312-16331 Msa1428880:CDS 35.0%
!! AGAAGACGGATTTGTTGAAT+CGG - tig0026416:16347-16366 Msa1428880:CDS 35.0%
! CTTCTTTTCTTCAGCTTTCA+TGG + tig0026416:15576-15595 None:intergenic 35.0%
TAATTTCGTCGTTGAGATCA+CGG + tig0026416:15739-15758 None:intergenic 35.0%
TCATTCGTGAAAAATCGCAT+TGG - tig0026416:15765-15784 Msa1428880:CDS 35.0%
CATTCGTGAAAAATCGCATT+GGG - tig0026416:15766-15785 Msa1428880:CDS 35.0%
TTCTGCGAAAATGACTGATT+TGG - tig0026416:15832-15851 Msa1428880:CDS 35.0%
!! CGAAAATGACTGATTTGGAT+GGG - tig0026416:15837-15856 Msa1428880:CDS 35.0%
GTTATAGGGATGATGAAGAT+GGG - tig0026416:16026-16045 Msa1428880:CDS 35.0%
TTCTCAATCTCTTTCTCATC+CGG + tig0026416:16310-16329 None:intergenic 35.0%
TGAGAAAGAGATTGAGAAGA+TGG - tig0026416:16312-16331 Msa1428880:CDS 35.0%
!! AGAAGACGGATTTGTTGAAT+CGG - tig0026416:16347-16366 Msa1428880:CDS 35.0%
!! GCGAAAATGACTGATTTGGA+TGG - tig0026416:15836-15855 Msa1428880:CDS 40.0%
GCACCAAAATATCTATACCC+CGG + tig0026416:15899-15918 None:intergenic 40.0%
!!! GGGGTATAGATATTTTGGTG+CGG - tig0026416:15898-15917 Msa1428880:CDS 40.0%
GGTTATAGGGATGATGAAGA+TGG - tig0026416:16025-16044 Msa1428880:CDS 40.0%
GGATGATGAAGATGGGATAT+TGG - tig0026416:16033-16052 Msa1428880:CDS 40.0%
ATGAAGATGGGATATTGGAG+CGG - tig0026416:16038-16057 Msa1428880:CDS 40.0%
ATAGGATAAGGAAGGAAGCT+AGG - tig0026416:16122-16141 Msa1428880:CDS 40.0%
AGAGGTTGGATGAGAAAGAA+AGG - tig0026416:16260-16279 Msa1428880:CDS 40.0%
GAGGTTGGATGAGAAAGAAA+GGG - tig0026416:16261-16280 Msa1428880:CDS 40.0%
GTATGTCAGTGATGAGCTTA+TGG - tig0026416:16369-16388 Msa1428880:CDS 40.0%
!! GCGAAAATGACTGATTTGGA+TGG - tig0026416:15836-15855 Msa1428880:CDS 40.0%
GCACCAAAATATCTATACCC+CGG + tig0026416:15899-15918 None:intergenic 40.0%
!!! GGGGTATAGATATTTTGGTG+CGG - tig0026416:15898-15917 Msa1428880:CDS 40.0%
GGTTATAGGGATGATGAAGA+TGG - tig0026416:16025-16044 Msa1428880:CDS 40.0%
GGATGATGAAGATGGGATAT+TGG - tig0026416:16033-16052 Msa1428880:CDS 40.0%
ATGAAGATGGGATATTGGAG+CGG - tig0026416:16038-16057 Msa1428880:CDS 40.0%
ATAGGATAAGGAAGGAAGCT+AGG - tig0026416:16122-16141 Msa1428880:CDS 40.0%
AGAGGTTGGATGAGAAAGAA+AGG - tig0026416:16260-16279 Msa1428880:CDS 40.0%
GAGGTTGGATGAGAAAGAAA+GGG - tig0026416:16261-16280 Msa1428880:CDS 40.0%
GTATGTCAGTGATGAGCTTA+TGG - tig0026416:16369-16388 Msa1428880:CDS 40.0%
AGAAAAGGACGGCGTTCTTT+AGG + tig0026416:15602-15621 None:intergenic 45.0%
ATTCGGAAGCGAGAAAAGGA+CGG + tig0026416:15613-15632 None:intergenic 45.0%
!! GATTTGCTGACGCCATTTGT+CGG + tig0026416:15654-15673 None:intergenic 45.0%
CAGCAAATCATGCGCGAAAT+CGG - tig0026416:15665-15684 Msa1428880:CDS 45.0%
! GAGACCTTCGTTCTGAATCT+CGG + tig0026416:15702-15721 None:intergenic 45.0%
GAGATTCAGAACGAAGGTCT+CGG - tig0026416:15701-15720 Msa1428880:CDS 45.0%
GTGAAAAATCGCATTGGGAG+AGG - tig0026416:15771-15790 Msa1428880:CDS 45.0%
GAGAGGAGAATTGTTGAGCT+TGG - tig0026416:15788-15807 Msa1428880:CDS 45.0%
AGGAGAATTGTTGAGCTTGG+AGG - tig0026416:15791-15810 Msa1428880:CDS 45.0%
GCAGAATGCCTCGCATAATT+CGG + tig0026416:15818-15837 None:intergenic 45.0%
GTTGATGTTCCTAACCCTAG+TGG - tig0026416:15866-15885 Msa1428880:CDS 45.0%
ATGTTCCTAACCCTAGTGGA+AGG - tig0026416:15870-15889 Msa1428880:CDS 45.0%
TGTTCCTAACCCTAGTGGAA+GGG - tig0026416:15871-15890 Msa1428880:CDS 45.0%
TGAAGATGGGATATTGGAGC+GGG - tig0026416:16039-16058 Msa1428880:CDS 45.0%
GAGGTTGGATAGGATAAGGA+AGG - tig0026416:16114-16133 Msa1428880:CDS 45.0%
GATAAGGAAGGAAGCTAGGA+AGG - tig0026416:16126-16145 Msa1428880:CDS 45.0%
TACGAGGGAGATACTTCATG+AGG - tig0026416:16186-16205 Msa1428880:CDS 45.0%
GATACTTCATGAGGAGGAAG+AGG - tig0026416:16195-16214 Msa1428880:CDS 45.0%
ATCTCTTTCTCATCCGGCAA+TGG + tig0026416:16304-16323 None:intergenic 45.0%
! GGTGTTGCAGAAGAAGAAGA+CGG - tig0026416:16333-16352 Msa1428880:CDS 45.0%
TGTCAGTGATGAGCTTATGG+AGG - tig0026416:16372-16391 Msa1428880:CDS 45.0%
AGAAAAGGACGGCGTTCTTT+AGG + tig0026416:15602-15621 None:intergenic 45.0%
ATTCGGAAGCGAGAAAAGGA+CGG + tig0026416:15613-15632 None:intergenic 45.0%
!! GATTTGCTGACGCCATTTGT+CGG + tig0026416:15654-15673 None:intergenic 45.0%
CAGCAAATCATGCGCGAAAT+CGG - tig0026416:15665-15684 Msa1428880:CDS 45.0%
! GAGACCTTCGTTCTGAATCT+CGG + tig0026416:15702-15721 None:intergenic 45.0%
GAGATTCAGAACGAAGGTCT+CGG - tig0026416:15701-15720 Msa1428880:CDS 45.0%
GTGAAAAATCGCATTGGGAG+AGG - tig0026416:15771-15790 Msa1428880:CDS 45.0%
GAGAGGAGAATTGTTGAGCT+TGG - tig0026416:15788-15807 Msa1428880:CDS 45.0%
AGGAGAATTGTTGAGCTTGG+AGG - tig0026416:15791-15810 Msa1428880:CDS 45.0%
GCAGAATGCCTCGCATAATT+CGG + tig0026416:15818-15837 None:intergenic 45.0%
GTTGATGTTCCTAACCCTAG+TGG - tig0026416:15866-15885 Msa1428880:CDS 45.0%
ATGTTCCTAACCCTAGTGGA+AGG - tig0026416:15870-15889 Msa1428880:CDS 45.0%
TGTTCCTAACCCTAGTGGAA+GGG - tig0026416:15871-15890 Msa1428880:CDS 45.0%
TGAAGATGGGATATTGGAGC+GGG - tig0026416:16039-16058 Msa1428880:CDS 45.0%
GAGGTTGGATAGGATAAGGA+AGG - tig0026416:16114-16133 Msa1428880:CDS 45.0%
GATAAGGAAGGAAGCTAGGA+AGG - tig0026416:16126-16145 Msa1428880:CDS 45.0%
TACGAGGGAGATACTTCATG+AGG - tig0026416:16186-16205 Msa1428880:CDS 45.0%
GATACTTCATGAGGAGGAAG+AGG - tig0026416:16195-16214 Msa1428880:CDS 45.0%
ATCTCTTTCTCATCCGGCAA+TGG + tig0026416:16304-16323 None:intergenic 45.0%
! GGTGTTGCAGAAGAAGAAGA+CGG - tig0026416:16333-16352 Msa1428880:CDS 45.0%
TGTCAGTGATGAGCTTATGG+AGG - tig0026416:16372-16391 Msa1428880:CDS 45.0%
TTCGTTGAGGTCACGGCATT+CGG + tig0026416:15630-15649 None:intergenic 50.0%
ACCTCAACGAAGCCGACAAA+TGG - tig0026416:15639-15658 Msa1428880:CDS 50.0%
TCTGAATCTCGGCGACTTTG+CGG + tig0026416:15691-15710 None:intergenic 50.0%
TTGGAGGACCGAATTATGCG+AGG - tig0026416:15807-15826 Msa1428880:CDS 50.0%
GTTCCTAACCCTAGTGGAAG+GGG - tig0026416:15872-15891 Msa1428880:CDS 50.0%
TTCCTAACCCTAGTGGAAGG+GGG - tig0026416:15873-15892 Msa1428880:CDS 50.0%
! GGGCCGGGGTATAGATATTT+TGG - tig0026416:15893-15912 Msa1428880:CDS 50.0%
GAAGAAATTGCCGGGGGTTA+GGG - tig0026416:15922-15941 Msa1428880:CDS 50.0%
TCAAAAAGCTCCCTAACCCC+CGG + tig0026416:15935-15954 None:intergenic 50.0%
GGGAGAGGTTGGATAGGATA+AGG - tig0026416:16110-16129 Msa1428880:CDS 50.0%
GGAGGTTGTTGAGGTTACTG+CGG - tig0026416:16162-16181 Msa1428880:CDS 50.0%
GAGGGAGATACTTCATGAGG+AGG - tig0026416:16189-16208 Msa1428880:CDS 50.0%
TCATGAGGAGGAAGAGGATG+TGG - tig0026416:16201-16220 Msa1428880:CDS 50.0%
AGGAAGAGAGGATGAAGGAG+AGG - tig0026416:16227-16246 Msa1428880:CDS 50.0%
GGAAGAGAGGATGAAGGAGA+GGG - tig0026416:16228-16247 Msa1428880:CDS 50.0%
GATGAAGGAGAGGGAGATGA+GGG - tig0026416:16237-16256 Msa1428880:CDS 50.0%
! TGTTGTGCATGTGCCATTGC+CGG - tig0026416:16288-16307 Msa1428880:CDS 50.0%
TTCGTTGAGGTCACGGCATT+CGG + tig0026416:15630-15649 None:intergenic 50.0%
ACCTCAACGAAGCCGACAAA+TGG - tig0026416:15639-15658 Msa1428880:CDS 50.0%
TCTGAATCTCGGCGACTTTG+CGG + tig0026416:15691-15710 None:intergenic 50.0%
TTGGAGGACCGAATTATGCG+AGG - tig0026416:15807-15826 Msa1428880:CDS 50.0%
GTTCCTAACCCTAGTGGAAG+GGG - tig0026416:15872-15891 Msa1428880:CDS 50.0%
TTCCTAACCCTAGTGGAAGG+GGG - tig0026416:15873-15892 Msa1428880:CDS 50.0%
! GGGCCGGGGTATAGATATTT+TGG - tig0026416:15893-15912 Msa1428880:CDS 50.0%
GAAGAAATTGCCGGGGGTTA+GGG - tig0026416:15922-15941 Msa1428880:CDS 50.0%
TCAAAAAGCTCCCTAACCCC+CGG + tig0026416:15935-15954 None:intergenic 50.0%
GGGAGAGGTTGGATAGGATA+AGG - tig0026416:16110-16129 Msa1428880:CDS 50.0%
GGAGGTTGTTGAGGTTACTG+CGG - tig0026416:16162-16181 Msa1428880:CDS 50.0%
GAGGGAGATACTTCATGAGG+AGG - tig0026416:16189-16208 Msa1428880:CDS 50.0%
TCATGAGGAGGAAGAGGATG+TGG - tig0026416:16201-16220 Msa1428880:CDS 50.0%
AGGAAGAGAGGATGAAGGAG+AGG - tig0026416:16227-16246 Msa1428880:CDS 50.0%
GGAAGAGAGGATGAAGGAGA+GGG - tig0026416:16228-16247 Msa1428880:CDS 50.0%
GATGAAGGAGAGGGAGATGA+GGG - tig0026416:16237-16256 Msa1428880:CDS 50.0%
! TGTTGTGCATGTGCCATTGC+CGG - tig0026416:16288-16307 Msa1428880:CDS 50.0%
CGGCATTCGGAAGCGAGAAA+AGG + tig0026416:15617-15636 None:intergenic 55.0%
!! TGTCGGCTTCGTTGAGGTCA+CGG + tig0026416:15637-15656 None:intergenic 55.0%
!! GCCATTTGTCGGCTTCGTTG+AGG + tig0026416:15643-15662 None:intergenic 55.0%
GTCGCCGAGATTCAGAACGA+AGG - tig0026416:15695-15714 Msa1428880:CDS 55.0%
CGTCGTTGAGATCACGGAGA+CGG + tig0026416:15733-15752 None:intergenic 55.0%
TGGTGCGGCGAAGAAATTGC+CGG - tig0026416:15913-15932 Msa1428880:CDS 55.0%
CGAAGAAATTGCCGGGGGTT+AGG - tig0026416:15921-15940 Msa1428880:CDS 55.0%
TTGAGAAGCCGCCAGAGTTG+AGG - tig0026416:15951-15970 Msa1428880:CDS 55.0%
AGCCGCCAGAGTTGAGGAAA+CGG - tig0026416:15957-15976 Msa1428880:CDS 55.0%
CTCCGTTTCCTCAACTCTGG+CGG + tig0026416:15962-15981 None:intergenic 55.0%
GTCCTCCGTTTCCTCAACTC+TGG + tig0026416:15965-15984 None:intergenic 55.0%
!! TGGGATATTGGAGCGGGTTG+AGG - tig0026416:16045-16064 Msa1428880:CDS 55.0%
! CACCGGCTGAGGAATGTATG+AGG - tig0026416:16068-16087 Msa1428880:CDS 55.0%
CGCCTCATACATTCCTCAGC+CGG + tig0026416:16073-16092 None:intergenic 55.0%
CGGCTGAGGAATGTATGAGG+CGG - tig0026416:16071-16090 Msa1428880:CDS 55.0%
GGCTGAGGAATGTATGAGGC+GGG - tig0026416:16072-16091 Msa1428880:CDS 55.0%
TGAGGAATGTATGAGGCGGG+AGG - tig0026416:16075-16094 Msa1428880:CDS 55.0%
AGGAGTGGGAGAGGTTGGAT+AGG - tig0026416:16104-16123 Msa1428880:CDS 55.0%
AGGAAGCTAGGAAGGCTGTG+AGG - tig0026416:16134-16153 Msa1428880:CDS 55.0%
CTAGGAAGGCTGTGAGGAGT+GGG - tig0026416:16140-16159 Msa1428880:CDS 55.0%
TAGGAAGGCTGTGAGGAGTG+GGG - tig0026416:16141-16160 Msa1428880:CDS 55.0%
TTGAGGTTACTGCGGCTACG+AGG - tig0026416:16170-16189 Msa1428880:CDS 55.0%
TGAGGTTACTGCGGCTACGA+GGG - tig0026416:16171-16190 Msa1428880:CDS 55.0%
TGAGGAGGAAGAGGATGTGG+TGG - tig0026416:16204-16223 Msa1428880:CDS 55.0%
! AGGATGTGGTGGAGGAAGAG+AGG - tig0026416:16215-16234 Msa1428880:CDS 55.0%
GGTGGAGGAAGAGAGGATGA+AGG - tig0026416:16222-16241 Msa1428880:CDS 55.0%
GGATGAAGGAGAGGGAGATG+AGG - tig0026416:16236-16255 Msa1428880:CDS 55.0%
GGAGGAGCAGACTGAAGCTA+AGG - tig0026416:16390-16409 Msa1428880:CDS 55.0%
CGGCATTCGGAAGCGAGAAA+AGG + tig0026416:15617-15636 None:intergenic 55.0%
!! TGTCGGCTTCGTTGAGGTCA+CGG + tig0026416:15637-15656 None:intergenic 55.0%
!! GCCATTTGTCGGCTTCGTTG+AGG + tig0026416:15643-15662 None:intergenic 55.0%
GTCGCCGAGATTCAGAACGA+AGG - tig0026416:15695-15714 Msa1428880:CDS 55.0%
CGTCGTTGAGATCACGGAGA+CGG + tig0026416:15733-15752 None:intergenic 55.0%
TGGTGCGGCGAAGAAATTGC+CGG - tig0026416:15913-15932 Msa1428880:CDS 55.0%
CGAAGAAATTGCCGGGGGTT+AGG - tig0026416:15921-15940 Msa1428880:CDS 55.0%
TTGAGAAGCCGCCAGAGTTG+AGG - tig0026416:15951-15970 Msa1428880:CDS 55.0%
AGCCGCCAGAGTTGAGGAAA+CGG - tig0026416:15957-15976 Msa1428880:CDS 55.0%
CTCCGTTTCCTCAACTCTGG+CGG + tig0026416:15962-15981 None:intergenic 55.0%
GTCCTCCGTTTCCTCAACTC+TGG + tig0026416:15965-15984 None:intergenic 55.0%
!! TGGGATATTGGAGCGGGTTG+AGG - tig0026416:16045-16064 Msa1428880:CDS 55.0%
! CACCGGCTGAGGAATGTATG+AGG - tig0026416:16068-16087 Msa1428880:CDS 55.0%
CGCCTCATACATTCCTCAGC+CGG + tig0026416:16073-16092 None:intergenic 55.0%
CGGCTGAGGAATGTATGAGG+CGG - tig0026416:16071-16090 Msa1428880:CDS 55.0%
GGCTGAGGAATGTATGAGGC+GGG - tig0026416:16072-16091 Msa1428880:CDS 55.0%
TGAGGAATGTATGAGGCGGG+AGG - tig0026416:16075-16094 Msa1428880:CDS 55.0%
AGGAGTGGGAGAGGTTGGAT+AGG - tig0026416:16104-16123 Msa1428880:CDS 55.0%
AGGAAGCTAGGAAGGCTGTG+AGG - tig0026416:16134-16153 Msa1428880:CDS 55.0%
CTAGGAAGGCTGTGAGGAGT+GGG - tig0026416:16140-16159 Msa1428880:CDS 55.0%
TAGGAAGGCTGTGAGGAGTG+GGG - tig0026416:16141-16160 Msa1428880:CDS 55.0%
TTGAGGTTACTGCGGCTACG+AGG - tig0026416:16170-16189 Msa1428880:CDS 55.0%
TGAGGTTACTGCGGCTACGA+GGG - tig0026416:16171-16190 Msa1428880:CDS 55.0%
TGAGGAGGAAGAGGATGTGG+TGG - tig0026416:16204-16223 Msa1428880:CDS 55.0%
! AGGATGTGGTGGAGGAAGAG+AGG - tig0026416:16215-16234 Msa1428880:CDS 55.0%
GGTGGAGGAAGAGAGGATGA+AGG - tig0026416:16222-16241 Msa1428880:CDS 55.0%
GGATGAAGGAGAGGGAGATG+AGG - tig0026416:16236-16255 Msa1428880:CDS 55.0%
GGAGGAGCAGACTGAAGCTA+AGG - tig0026416:16390-16409 Msa1428880:CDS 55.0%
TAACCCTAGTGGAAGGGGGC+CGG - tig0026416:15877-15896 Msa1428880:CDS 60.0%
GGTGCGGCGAAGAAATTGCC+GGG - tig0026416:15914-15933 Msa1428880:CDS 60.0%
GTGCGGCGAAGAAATTGCCG+GGG - tig0026416:15915-15934 Msa1428880:CDS 60.0%
TGCGGCGAAGAAATTGCCGG+GGG - tig0026416:15916-15935 Msa1428880:CDS 60.0%
CGCCAGAGTTGAGGAAACGG+AGG - tig0026416:15960-15979 Msa1428880:CDS 60.0%
!! ATTGGAGCGGGTTGAGGCAC+CGG - tig0026416:16051-16070 Msa1428880:CDS 60.0%
GGAATGTATGAGGCGGGAGG+CGG - tig0026416:16078-16097 Msa1428880:CDS 60.0%
GGTTGAGGAGTGGGAGAGGT+TGG - tig0026416:16099-16118 Msa1428880:CDS 60.0%
GCTAGGAAGGCTGTGAGGAG+TGG - tig0026416:16139-16158 Msa1428880:CDS 60.0%
GAGGAGTGGGGAGGTTGTTG+AGG - tig0026416:16153-16172 Msa1428880:CDS 60.0%
GGAGGAAGAGGATGTGGTGG+AGG - tig0026416:16207-16226 Msa1428880:CDS 60.0%
AGGAGAGGGAGATGAGGGAG+AGG - tig0026416:16242-16261 Msa1428880:CDS 60.0%
GAGGGAGATGAGGGAGAGGT+TGG - tig0026416:16246-16265 Msa1428880:CDS 60.0%
TAACCCTAGTGGAAGGGGGC+CGG - tig0026416:15877-15896 Msa1428880:CDS 60.0%
GGTGCGGCGAAGAAATTGCC+GGG - tig0026416:15914-15933 Msa1428880:CDS 60.0%
GTGCGGCGAAGAAATTGCCG+GGG - tig0026416:15915-15934 Msa1428880:CDS 60.0%
TGCGGCGAAGAAATTGCCGG+GGG - tig0026416:15916-15935 Msa1428880:CDS 60.0%
CGCCAGAGTTGAGGAAACGG+AGG - tig0026416:15960-15979 Msa1428880:CDS 60.0%
!! ATTGGAGCGGGTTGAGGCAC+CGG - tig0026416:16051-16070 Msa1428880:CDS 60.0%
GGAATGTATGAGGCGGGAGG+CGG - tig0026416:16078-16097 Msa1428880:CDS 60.0%
GGTTGAGGAGTGGGAGAGGT+TGG - tig0026416:16099-16118 Msa1428880:CDS 60.0%
GCTAGGAAGGCTGTGAGGAG+TGG - tig0026416:16139-16158 Msa1428880:CDS 60.0%
GAGGAGTGGGGAGGTTGTTG+AGG - tig0026416:16153-16172 Msa1428880:CDS 60.0%
GGAGGAAGAGGATGTGGTGG+AGG - tig0026416:16207-16226 Msa1428880:CDS 60.0%
AGGAGAGGGAGATGAGGGAG+AGG - tig0026416:16242-16261 Msa1428880:CDS 60.0%
GAGGGAGATGAGGGAGAGGT+TGG - tig0026416:16246-16265 Msa1428880:CDS 60.0%
GGCCCCCTTCCACTAGGGTT+AGG + tig0026416:15878-15897 None:intergenic 65.0%
AACCCTAGTGGAAGGGGGCC+GGG - tig0026416:15878-15897 Msa1428880:CDS 65.0%
TATGAGGCGGGAGGCGGTTG+AGG - tig0026416:16084-16103 Msa1428880:CDS 65.0%
AGGCGGTTGAGGAGTGGGAG+AGG - tig0026416:16095-16114 Msa1428880:CDS 65.0%
GAAGGCTGTGAGGAGTGGGG+AGG - tig0026416:16144-16163 Msa1428880:CDS 65.0%
GGCCCCCTTCCACTAGGGTT+AGG + tig0026416:15878-15897 None:intergenic 65.0%
AACCCTAGTGGAAGGGGGCC+GGG - tig0026416:15878-15897 Msa1428880:CDS 65.0%
TATGAGGCGGGAGGCGGTTG+AGG - tig0026416:16084-16103 Msa1428880:CDS 65.0%
AGGCGGTTGAGGAGTGGGAG+AGG - tig0026416:16095-16114 Msa1428880:CDS 65.0%
GAAGGCTGTGAGGAGTGGGG+AGG - tig0026416:16144-16163 Msa1428880:CDS 65.0%
ACCCTAGTGGAAGGGGGCCG+GGG - tig0026416:15879-15898 Msa1428880:CDS 70.0%
ACCCCGGCCCCCTTCCACTA+GGG + tig0026416:15883-15902 None:intergenic 70.0%
TACCCCGGCCCCCTTCCACT+AGG + tig0026416:15884-15903 None:intergenic 70.0%
GCGGGAGGCGGTTGAGGAGT+GGG - tig0026416:16090-16109 Msa1428880:CDS 70.0%
ACCCTAGTGGAAGGGGGCCG+GGG - tig0026416:15879-15898 Msa1428880:CDS 70.0%
ACCCCGGCCCCCTTCCACTA+GGG + tig0026416:15883-15902 None:intergenic 70.0%
TACCCCGGCCCCCTTCCACT+AGG + tig0026416:15884-15903 None:intergenic 70.0%
GCGGGAGGCGGTTGAGGAGT+GGG - tig0026416:16090-16109 Msa1428880:CDS 70.0%
!! GCGGGTTGAGGCACCGGCTG+AGG - tig0026416:16057-16076 Msa1428880:CDS 75.0%
GGCGGGAGGCGGTTGAGGAG+TGG - tig0026416:16089-16108 Msa1428880:CDS 75.0%
!! GCGGGTTGAGGCACCGGCTG+AGG - tig0026416:16057-16076 Msa1428880:CDS 75.0%
GGCGGGAGGCGGTTGAGGAG+TGG - tig0026416:16089-16108 Msa1428880:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0026416 gene 15524 16435 15524 ID=Msa1428880;Name=Msa1428880
tig0026416 mRNA 15524 16435 15524 ID=Msa1428880-mRNA-1;Parent=Msa1428880;Name=Msa1428880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|303
tig0026416 exon 15524 16435 15524 ID=Msa1428880-mRNA-1:exon:6221;Parent=Msa1428880-mRNA-1
tig0026416 CDS 15524 16435 15524 ID=Msa1428880-mRNA-1:cds;Parent=Msa1428880-mRNA-1
Gene Sequence

>Msa1428880

ATGGCTCGTAACGAAGAAAAAGCACAATCGATGCTGAATCGATTCATCACCATGAAAGCTGAAGAAAAGAAGAAACCTAAAGAACGCCGTCCTTTTCTCGCTTCCGAATGCCGTGACCTCAACGAAGCCGACAAATGGCGTCAGCAAATCATGCGCGAAATCGGCCGCAAAGTCGCCGAGATTCAGAACGAAGGTCTCGGCGAACACCGTCTCCGTGATCTCAACGACGAAATTAACAAACTCATTCGTGAAAAATCGCATTGGGAGAGGAGAATTGTTGAGCTTGGAGGACCGAATTATGCGAGGCATTCTGCGAAAATGACTGATTTGGATGGGAATATTGTTGATGTTCCTAACCCTAGTGGAAGGGGGCCGGGGTATAGATATTTTGGTGCGGCGAAGAAATTGCCGGGGGTTAGGGAGCTTTTTGAGAAGCCGCCAGAGTTGAGGAAACGGAGGACGAGATATGATATTTATAAGAGGATTAATGCTGCTTATTATGGTTATAGGGATGATGAAGATGGGATATTGGAGCGGGTTGAGGCACCGGCTGAGGAATGTATGAGGCGGGAGGCGGTTGAGGAGTGGGAGAGGTTGGATAGGATAAGGAAGGAAGCTAGGAAGGCTGTGAGGAGTGGGGAGGTTGTTGAGGTTACTGCGGCTACGAGGGAGATACTTCATGAGGAGGAAGAGGATGTGGTGGAGGAAGAGAGGATGAAGGAGAGGGAGATGAGGGAGAGGTTGGATGAGAAAGAAAGGGAATTTGTTGTGCATGTGCCATTGCCGGATGAGAAAGAGATTGAGAAGATGGTGTTGCAGAAGAAGAAGACGGATTTGTTGAATCGGTATGTCAGTGATGAGCTTATGGAGGAGCAGACTGAAGCTAAGGATTTGCTTAACATTCATCGCTAG

Protein sequence

>Msa1428880

MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLASECRDLNEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYARHSAKMTDLDGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRINAAYYGYRDDEDGILERVEAPAEECMRREAVEEWERLDRIRKEARKAVRSGEVVEVTAATREILHEEEEDVVEEERMKEREMRERLDEKEREFVVHVPLPDEKEIEKMVLQKKKTDLLNRYVSDELMEEQTEAKDLLNIHR*