Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119500 | AES67467.2 | 70.464 | 237 | 34 | 8 | 1 | 230 | 1 | 208 | 5.28e-99 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119500 | sp|F1MK05|RN170_BOVIN | 28.571 | 196 | 131 | 4 | 76 | 271 | 73 | 259 | 1.40e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119500 | G7IRQ1 | 70.464 | 237 | 34 | 8 | 1 | 230 | 1 | 208 | 2.52e-99 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa1119500 | 0.813565 | 2.399577e-51 | -8.615850e-47 |
| Msa0017510 | Msa1119500 | 0.800305 | 1.534228e-48 | -8.615850e-47 |
| Msa0045490 | Msa1119500 | 0.817992 | 2.472810e-52 | -8.615850e-47 |
| Msa0046100 | Msa1119500 | 0.807473 | 4.968792e-50 | -8.615850e-47 |
| Msa0052680 | Msa1119500 | 0.802343 | 5.869196e-49 | -8.615850e-47 |
| Msa0089360 | Msa1119500 | 0.808828 | 2.556961e-50 | -8.615850e-47 |
| Msa0089380 | Msa1119500 | 0.809713 | 1.651366e-50 | -8.615850e-47 |
| Msa0113970 | Msa1119500 | 0.802108 | 6.560467e-49 | -8.615850e-47 |
| Msa0682330 | Msa1119500 | 0.817733 | 2.829972e-52 | -8.615850e-47 |
| Msa0684500 | Msa1119500 | 0.805449 | 1.327607e-49 | -8.615850e-47 |
| Msa0693380 | Msa1119500 | 0.809099 | 2.236392e-50 | -8.615850e-47 |
| Msa0704600 | Msa1119500 | 0.815351 | 9.665775e-52 | -8.615850e-47 |
| Msa0755410 | Msa1119500 | 0.801839 | 7.449447e-49 | -8.615850e-47 |
| Msa0777990 | Msa1119500 | 0.800293 | 1.542462e-48 | -8.615850e-47 |
| Msa0787260 | Msa1119500 | 0.810850 | 9.389243e-51 | -8.615850e-47 |
| Msa0142950 | Msa1119500 | 0.808367 | 3.207501e-50 | -8.615850e-47 |
| Msa0157290 | Msa1119500 | 0.800507 | 1.395285e-48 | -8.615850e-47 |
| Msa0170570 | Msa1119500 | 0.801731 | 7.841896e-49 | -8.615850e-47 |
| Msa0195630 | Msa1119500 | 0.803137 | 4.023136e-49 | -8.615850e-47 |
| Msa0205850 | Msa1119500 | 0.807671 | 4.510720e-50 | -8.615850e-47 |
| Msa0216240 | Msa1119500 | 0.835288 | 1.830826e-56 | -8.615850e-47 |
| Msa0227400 | Msa1119500 | 0.807150 | 5.817586e-50 | -8.615850e-47 |
| Msa0237410 | Msa1119500 | 0.804202 | 2.419144e-49 | -8.615850e-47 |
| Msa0474950 | Msa1119500 | 0.800032 | 1.742876e-48 | -8.615850e-47 |
| Msa1014420 | Msa1119500 | 0.812163 | 4.869156e-51 | -8.615850e-47 |
| Msa1045200 | Msa1119500 | 0.808010 | 3.819876e-50 | -8.615850e-47 |
| Msa1082500 | Msa1119500 | 0.814172 | 1.764026e-51 | -8.615850e-47 |
| Msa1098400 | Msa1119500 | 0.803689 | 3.092792e-49 | -8.615850e-47 |
| Msa0271810 | Msa1119500 | 0.801169 | 1.022153e-48 | -8.615850e-47 |
| Msa0282250 | Msa1119500 | 0.806237 | 9.068934e-50 | -8.615850e-47 |
| Msa0287650 | Msa1119500 | 0.801666 | 8.085074e-49 | -8.615850e-47 |
| Msa0311700 | Msa1119500 | 0.802306 | 5.973906e-49 | -8.615850e-47 |
| Msa0323180 | Msa1119500 | 0.801291 | 9.649493e-49 | -8.615850e-47 |
| Msa0333920 | Msa1119500 | 0.800153 | 1.646787e-48 | -8.615850e-47 |
| Msa0334040 | Msa1119500 | 0.816568 | 5.172569e-52 | -8.615850e-47 |
| Msa0359030 | Msa1119500 | 0.808639 | 2.805200e-50 | -8.615850e-47 |
| Msa1119500 | Msa1119540 | 0.939237 | 1.781397e-99 | -8.615850e-47 |
| Msa1119500 | Msa1127890 | 0.819859 | 9.307222e-53 | -8.615850e-47 |
| Msa1119500 | Msa1201120 | 0.815511 | 8.906217e-52 | -8.615850e-47 |
| Msa1119500 | Msa1236100 | 0.802110 | 6.553140e-49 | -8.615850e-47 |
| Msa1119500 | Msa1252740 | 0.800809 | 1.210684e-48 | -8.615850e-47 |
| Msa1119500 | Msa1274520 | 0.804086 | 2.557123e-49 | -8.615850e-47 |
| Msa1119500 | Msa1276660 | 0.801386 | 9.228979e-49 | -8.615850e-47 |
| Msa1119500 | Msa1292830 | 0.808642 | 2.800936e-50 | -8.615850e-47 |
| Msa1119500 | Msa1314340 | 0.803221 | 3.866741e-49 | -8.615850e-47 |
| Msa1119500 | Msa1340650 | 0.805524 | 1.280750e-49 | -8.615850e-47 |
| Msa1119500 | Msa1346370 | 0.810890 | 9.204667e-51 | -8.615850e-47 |
| Msa1119500 | Msa1371640 | 0.829202 | 5.874551e-55 | -8.615850e-47 |
| Msa1119500 | Msa1376200 | 0.818305 | 2.100402e-52 | -8.615850e-47 |
| Msa1119500 | Msa1404540 | 0.804730 | 1.877563e-49 | -8.615850e-47 |
| Msa1119500 | Msa1422580 | 0.804533 | 2.063543e-49 | -8.615850e-47 |
| Msa1119500 | Msa1427060 | 0.816474 | 5.429096e-52 | -8.615850e-47 |
| Msa1119500 | Msa1448510 | 0.804914 | 1.718552e-49 | -8.615850e-47 |
| Msa1119500 | Msa1452120 | 0.808145 | 3.575672e-50 | -8.615850e-47 |
| Msa1119500 | Msa1457430 | 0.802700 | 4.952906e-49 | -8.615850e-47 |
| Msa1119500 | Msa1460020 | 0.812959 | 3.260004e-51 | -8.615850e-47 |
| Msa1119500 | Msa1461300 | 0.800647 | 1.306451e-48 | -8.615850e-47 |
| Msa0484780 | Msa1119500 | 0.827312 | 1.677125e-54 | -8.615850e-47 |
| Msa0484840 | Msa1119500 | 0.817832 | 2.687428e-52 | -8.615850e-47 |
| Msa0509610 | Msa1119500 | 0.814460 | 1.523354e-51 | -8.615850e-47 |
| Msa0546680 | Msa1119500 | 0.802060 | 6.710792e-49 | -8.615850e-47 |
| Msa0548620 | Msa1119500 | 0.803390 | 3.567133e-49 | -8.615850e-47 |
| Msa0564590 | Msa1119500 | 0.803292 | 3.737836e-49 | -8.615850e-47 |
| Msa0861870 | Msa1119500 | 0.802190 | 6.309011e-49 | -8.615850e-47 |
| Msa0863930 | Msa1119500 | 0.800705 | 1.271213e-48 | -8.615850e-47 |
| Msa0906690 | Msa1119500 | 0.801246 | 9.858009e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119500 | MtrunA17_Chr2g0326471 | 70.464 | 237 | 34 | 8 | 1 | 230 | 1 | 208 | 4.85e-103 | 299 |
| Msa1119500 | MtrunA17_Chr3g0077701 | 60.204 | 196 | 72 | 3 | 75 | 270 | 1 | 190 | 1.78e-80 | 241 |
| Msa1119500 | MtrunA17_Chr3g0077691 | 49.640 | 139 | 63 | 3 | 83 | 221 | 10 | 141 | 1.19e-44 | 148 |
| Msa1119500 | MtrunA17_Chr2g0326461 | 89.583 | 48 | 5 | 0 | 228 | 275 | 36 | 83 | 4.50e-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119500 | AT1G72175.1 | 53.333 | 180 | 78 | 3 | 91 | 270 | 10 | 183 | 6.15e-51 | 166 |
| Msa1119500 | AT1G22510.1 | 53.889 | 180 | 77 | 3 | 91 | 270 | 10 | 183 | 9.89e-45 | 150 |
| Msa1119500 | AT1G72175.2 | 53.947 | 152 | 64 | 3 | 119 | 270 | 4 | 149 | 2.34e-38 | 132 |
| Msa1119500 | AT1G22510.2 | 54.088 | 159 | 67 | 3 | 112 | 270 | 49 | 201 | 4.09e-33 | 120 |
| Msa1119500 | AT4G33940.1 | 28.022 | 182 | 123 | 4 | 81 | 262 | 64 | 237 | 3.10e-21 | 90.5 |
| Msa1119500 | AT4G33940.2 | 27.941 | 136 | 91 | 3 | 81 | 216 | 64 | 192 | 8.07e-14 | 68.9 |
Find 64 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGAAAAGAAAGGGAAAT+TGG | 0.207524 | 7_3:-68441760 | Msa1119500:CDS |
| GGCTAAGATAGAAGAAGAAT+TGG | 0.288794 | 7_3:-68441844 | Msa1119500:CDS |
| GGCAAAGTATTGATCTATAA+AGG | 0.294780 | 7_3:+68441093 | None:intergenic |
| TCATCGACCCGTTACCCTTT+TGG | 0.297940 | 7_3:-68441547 | Msa1119500:CDS |
| GGTTGAAGAGAAAGTGAAAT+TGG | 0.301053 | 7_3:-68441883 | Msa1119500:CDS |
| TGAATTCCAATCAGAACTTC+AGG | 0.330596 | 7_3:+68441468 | None:intergenic |
| GGAAGAAGATTAATGTAATT+AGG | 0.352640 | 7_3:+68441129 | None:intergenic |
| TCTATCTTAGCCTCTAACCC+TGG | 0.356011 | 7_3:+68441855 | None:intergenic |
| GAAGAAAAGGTTGAAAAGAA+AGG | 0.390677 | 7_3:-68441768 | Msa1119500:CDS |
| GTTGAAAAGAAAGGGAAATT+GGG | 0.390750 | 7_3:-68441759 | Msa1119500:CDS |
| CACGACCCTGAAGTTCTGAT+TGG | 0.390853 | 7_3:-68441474 | Msa1119500:CDS |
| TCAAAGAGTCTCTGAGTAAT+GGG | 0.393871 | 7_3:+68441408 | None:intergenic |
| ATTCGGAAAAGTTGGTCTCT+TGG | 0.403931 | 7_3:-68441159 | Msa1119500:CDS |
| AGAGAAAAGGAAAGGGAAAT+CGG | 0.414418 | 7_3:-68441817 | Msa1119500:CDS |
| ATTGGAAAACCCAGGGTTAG+AGG | 0.416917 | 7_3:-68441865 | Msa1119500:CDS |
| GGGTGAAGAGAAAGGGAAAT+CGG | 0.418833 | 7_3:-68441946 | Msa1119500:CDS |
| GTGAAGCTACATGCTCTCAT+TGG | 0.435563 | 7_3:-68441644 | Msa1119500:CDS |
| CTATCTTAGCCTCTAACCCT+GGG | 0.438058 | 7_3:+68441856 | None:intergenic |
| AAAAGCCTCCGCACGAGAAA+AGG | 0.440424 | 7_3:+68441381 | None:intergenic |
| AACTTGTACAATCGCTGATT+GGG | 0.444017 | 7_3:-68441613 | Msa1119500:CDS |
| AAGAAAAGGTTGAAAAGAAA+GGG | 0.445187 | 7_3:-68441767 | Msa1119500:CDS |
| CTACCTCAGCTTCTAACCCT+AGG | 0.452493 | 7_3:+68441733 | None:intergenic |
| GCTAAGATAGAAGAAGAATT+GGG | 0.456108 | 7_3:-68441843 | Msa1119500:CDS |
| ATGTAGCTTCACATATAATC+TGG | 0.464921 | 7_3:+68441655 | None:intergenic |
| CAACTTGTACAATCGCTGAT+TGG | 0.465387 | 7_3:-68441614 | Msa1119500:CDS |
| AAGAATTGGGTGAAGAGAAA+AGG | 0.466239 | 7_3:-68441830 | Msa1119500:CDS |
| CCTTCTGGGATGATGTCAAT+GGG | 0.470014 | 7_3:+68441264 | None:intergenic |
| CAATACTTTGCCTCCGTCAC+GGG | 0.478130 | 7_3:-68441082 | Msa1119500:CDS |
| GCAAAGTATTGATCTATAAA+GGG | 0.479128 | 7_3:+68441094 | None:intergenic |
| GTAGGAACCAAAAGGGTAAC+GGG | 0.484752 | 7_3:+68441540 | None:intergenic |
| ACACGAGCTCTGAAAAGAAA+AGG | 0.485582 | 7_3:+68441327 | None:intergenic |
| GGAGACTGAGAGAGAAGAAA+TGG | 0.487507 | 7_3:-68441904 | Msa1119500:CDS |
| ATCAAAGAGTCTCTGAGTAA+TGG | 0.493238 | 7_3:+68441407 | None:intergenic |
| AAAGGGAAATTGGGAAACCT+AGG | 0.493922 | 7_3:-68441750 | Msa1119500:CDS |
| GCTGAGGTAGAAGAAGAGAA+AGG | 0.494774 | 7_3:-68441720 | Msa1119500:CDS |
| AAGAAAAGGAAGAGATGTAT+CGG | 0.495031 | 7_3:+68441341 | None:intergenic |
| CTGAGGTAGAAGAAGAGAAA+GGG | 0.500548 | 7_3:-68441719 | Msa1119500:CDS |
| ACCTTCTGGGATGATGTCAA+TGG | 0.502368 | 7_3:+68441263 | None:intergenic |
| GCAGGAATATTCGGAAAAGT+TGG | 0.504703 | 7_3:-68441167 | Msa1119500:intron |
| GAGAAAGGGAAATTGAAAGA+AGG | 0.506259 | 7_3:-68441705 | Msa1119500:CDS |
| AGAGGGTGAGATAGAAGAAA+AGG | 0.508654 | 7_3:-68441781 | Msa1119500:CDS |
| AACTACAACTGCGACGATGA+TGG | 0.510417 | 7_3:-68441510 | Msa1119500:CDS |
| CTCTCTCAGTCTCCAACGCT+AGG | 0.520593 | 7_3:+68441913 | None:intergenic |
| TGGGTGAAGAGAAAAGGAAA+GGG | 0.526426 | 7_3:-68441824 | Msa1119500:CDS |
| TCAATACTTTGCCTCCGTCA+CGG | 0.533287 | 7_3:-68441083 | Msa1119500:CDS |
| TTGGGTGAAGAGAAAAGGAA+AGG | 0.536616 | 7_3:-68441825 | Msa1119500:CDS |
| GAATTCCAATCAGAACTTCA+GGG | 0.553145 | 7_3:+68441469 | None:intergenic |
| AACGAAAATTACGCCCGTGA+CGG | 0.561983 | 7_3:+68441069 | None:intergenic |
| AGTAGGAACCAAAAGGGTAA+CGG | 0.564577 | 7_3:+68441539 | None:intergenic |
| TGACAGTGTGGACATTTACA+AGG | 0.564971 | 7_3:+68441567 | None:intergenic |
| AGAAAAGGAAGAGATGTATC+GGG | 0.571993 | 7_3:+68441342 | None:intergenic |
| GGAAAACGAAAACCTAGCGT+TGG | 0.582482 | 7_3:-68441925 | Msa1119500:CDS |
| GAAAATTACGCCCGTGACGG+AGG | 0.584757 | 7_3:+68441072 | None:intergenic |
| TATAAAGGGCAGCAACATGT+AGG | 0.587058 | 7_3:+68441108 | None:intergenic |
| AAACCTAGGGTTAGAAGCTG+AGG | 0.601923 | 7_3:-68441736 | Msa1119500:CDS |
| AAGGGAAATTGGGAAACCTA+GGG | 0.602237 | 7_3:-68441749 | Msa1119500:CDS |
| CCCATTGACATCATCCCAGA+AGG | 0.615355 | 7_3:-68441264 | Msa1119500:intron |
| ATCGGAAGAAATATCGTCAG+AGG | 0.626223 | 7_3:-68441799 | Msa1119500:CDS |
| AAGTGAAATTGGAAAACCCA+GGG | 0.639009 | 7_3:-68441872 | Msa1119500:CDS |
| TCGGAAGAAATATCGTCAGA+GGG | 0.641570 | 7_3:-68441798 | Msa1119500:CDS |
| ACATTTACAAGGTTCAATGT+CGG | 0.657703 | 7_3:+68441578 | None:intergenic |
| AAAGTGAAATTGGAAAACCC+AGG | 0.679877 | 7_3:-68441873 | Msa1119500:CDS |
| CTTCTGGGATGATGTCAATG+GGG | 0.725072 | 7_3:+68441265 | None:intergenic |
| GTAACGGGTCGATGACAGTG+TGG | 0.759412 | 7_3:+68441555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGAAAAGGTTGAAAAGAAA+GGG | - | chr7_3:68441245-68441264 | Msa1119500:intron | 25.0% |
| !! | CAGACTTATAACACTATTTT+TGG | - | chr7_3:68441565-68441584 | Msa1119500:CDS | 25.0% |
| ! | ATGGAAAAATATAACCTTCT+GGG | + | chr7_3:68441765-68441784 | None:intergenic | 25.0% |
| ! | AATGGAAAAATATAACCTTC+TGG | + | chr7_3:68441766-68441785 | None:intergenic | 25.0% |
| ! | GGAAGAAGATTAATGTAATT+AGG | + | chr7_3:68441886-68441905 | None:intergenic | 25.0% |
| !!! | GCAAAGTATTGATCTATAAA+GGG | + | chr7_3:68441921-68441940 | None:intergenic | 25.0% |
| ! | AAGAAAAGGTTGAAAAGAAA+GGG | - | chr7_3:68441245-68441264 | Msa1119500:intron | 25.0% |
| !! | CAGACTTATAACACTATTTT+TGG | - | chr7_3:68441565-68441584 | Msa1119500:CDS | 25.0% |
| ! | ATGGAAAAATATAACCTTCT+GGG | + | chr7_3:68441765-68441784 | None:intergenic | 25.0% |
| ! | AATGGAAAAATATAACCTTC+TGG | + | chr7_3:68441766-68441785 | None:intergenic | 25.0% |
| ! | GGAAGAAGATTAATGTAATT+AGG | + | chr7_3:68441886-68441905 | None:intergenic | 25.0% |
| !!! | GCAAAGTATTGATCTATAAA+GGG | + | chr7_3:68441921-68441940 | None:intergenic | 25.0% |
| GCTAAGATAGAAGAAGAATT+GGG | - | chr7_3:68441169-68441188 | Msa1119500:intron | 30.0% | |
| GAAGAAAAGGTTGAAAAGAA+AGG | - | chr7_3:68441244-68441263 | Msa1119500:intron | 30.0% | |
| GTTGAAAAGAAAGGGAAATT+GGG | - | chr7_3:68441253-68441272 | Msa1119500:intron | 30.0% | |
| ATGTAGCTTCACATATAATC+TGG | + | chr7_3:68441360-68441379 | None:intergenic | 30.0% | |
| ACATTTACAAGGTTCAATGT+CGG | + | chr7_3:68441437-68441456 | None:intergenic | 30.0% | |
| !! | TTTTTCAGTAGGAACCAAAA+GGG | + | chr7_3:68441482-68441501 | None:intergenic | 30.0% |
| !!! | TTTTTTCAGTAGGAACCAAA+AGG | + | chr7_3:68441483-68441502 | None:intergenic | 30.0% |
| !!! | CAGTTGTAGTTTTTTTCAGT+AGG | + | chr7_3:68441493-68441512 | None:intergenic | 30.0% |
| AAGAAAAGGAAGAGATGTAT+CGG | + | chr7_3:68441674-68441693 | None:intergenic | 30.0% | |
| ! | TTTCACAAGTTGGACAAAAA+TGG | + | chr7_3:68441784-68441803 | None:intergenic | 30.0% |
| ! | TCCAACTTGTGAAATTGTTT+TGG | - | chr7_3:68441790-68441809 | Msa1119500:CDS | 30.0% |
| ACCAAAACAATTTCACAAGT+TGG | + | chr7_3:68441794-68441813 | None:intergenic | 30.0% | |
| ! | AATTTTGTTCCTTTTTCTGC+AGG | - | chr7_3:68441827-68441846 | Msa1119500:CDS | 30.0% |
| !! | GGCAAAGTATTGATCTATAA+AGG | + | chr7_3:68441922-68441941 | None:intergenic | 30.0% |
| GCTAAGATAGAAGAAGAATT+GGG | - | chr7_3:68441169-68441188 | Msa1119500:intron | 30.0% | |
| GAAGAAAAGGTTGAAAAGAA+AGG | - | chr7_3:68441244-68441263 | Msa1119500:intron | 30.0% | |
| GTTGAAAAGAAAGGGAAATT+GGG | - | chr7_3:68441253-68441272 | Msa1119500:intron | 30.0% | |
| ATGTAGCTTCACATATAATC+TGG | + | chr7_3:68441360-68441379 | None:intergenic | 30.0% | |
| ACATTTACAAGGTTCAATGT+CGG | + | chr7_3:68441437-68441456 | None:intergenic | 30.0% | |
| !! | TTTTTCAGTAGGAACCAAAA+GGG | + | chr7_3:68441482-68441501 | None:intergenic | 30.0% |
| !!! | TTTTTTCAGTAGGAACCAAA+AGG | + | chr7_3:68441483-68441502 | None:intergenic | 30.0% |
| !!! | CAGTTGTAGTTTTTTTCAGT+AGG | + | chr7_3:68441493-68441512 | None:intergenic | 30.0% |
| AAGAAAAGGAAGAGATGTAT+CGG | + | chr7_3:68441674-68441693 | None:intergenic | 30.0% | |
| ! | TTTCACAAGTTGGACAAAAA+TGG | + | chr7_3:68441784-68441803 | None:intergenic | 30.0% |
| ! | TCCAACTTGTGAAATTGTTT+TGG | - | chr7_3:68441790-68441809 | Msa1119500:CDS | 30.0% |
| ACCAAAACAATTTCACAAGT+TGG | + | chr7_3:68441794-68441813 | None:intergenic | 30.0% | |
| ! | AATTTTGTTCCTTTTTCTGC+AGG | - | chr7_3:68441827-68441846 | Msa1119500:CDS | 30.0% |
| !! | GGCAAAGTATTGATCTATAA+AGG | + | chr7_3:68441922-68441941 | None:intergenic | 30.0% |
| GGTTGAAGAGAAAGTGAAAT+TGG | - | chr7_3:68441129-68441148 | Msa1119500:CDS | 35.0% | |
| AAAGTGAAATTGGAAAACCC+AGG | - | chr7_3:68441139-68441158 | Msa1119500:CDS | 35.0% | |
| AAGTGAAATTGGAAAACCCA+GGG | - | chr7_3:68441140-68441159 | Msa1119500:CDS | 35.0% | |
| GGCTAAGATAGAAGAAGAAT+TGG | - | chr7_3:68441168-68441187 | Msa1119500:intron | 35.0% | |
| AAGAATTGGGTGAAGAGAAA+AGG | - | chr7_3:68441182-68441201 | Msa1119500:intron | 35.0% | |
| AGAGAAAAGGAAAGGGAAAT+CGG | - | chr7_3:68441195-68441214 | Msa1119500:intron | 35.0% | |
| GGTTGAAAAGAAAGGGAAAT+TGG | - | chr7_3:68441252-68441271 | Msa1119500:intron | 35.0% | |
| GAGAAAGGGAAATTGAAAGA+AGG | - | chr7_3:68441307-68441326 | Msa1119500:CDS | 35.0% | |
| ! | AACTTGTACAATCGCTGATT+GGG | - | chr7_3:68441399-68441418 | Msa1119500:CDS | 35.0% |
| GAATTCCAATCAGAACTTCA+GGG | + | chr7_3:68441546-68441565 | None:intergenic | 35.0% | |
| TGAATTCCAATCAGAACTTC+AGG | + | chr7_3:68441547-68441566 | None:intergenic | 35.0% | |
| TCAAAGAGTCTCTGAGTAAT+GGG | + | chr7_3:68441607-68441626 | None:intergenic | 35.0% | |
| ATCAAAGAGTCTCTGAGTAA+TGG | + | chr7_3:68441608-68441627 | None:intergenic | 35.0% | |
| AGAAAAGGAAGAGATGTATC+GGG | + | chr7_3:68441673-68441692 | None:intergenic | 35.0% | |
| ! | CCTTTTTCTGCAGGAATATT+CGG | - | chr7_3:68441836-68441855 | Msa1119500:CDS | 35.0% |
| GGTTGAAGAGAAAGTGAAAT+TGG | - | chr7_3:68441129-68441148 | Msa1119500:CDS | 35.0% | |
| AAAGTGAAATTGGAAAACCC+AGG | - | chr7_3:68441139-68441158 | Msa1119500:CDS | 35.0% | |
| AAGTGAAATTGGAAAACCCA+GGG | - | chr7_3:68441140-68441159 | Msa1119500:CDS | 35.0% | |
| GGCTAAGATAGAAGAAGAAT+TGG | - | chr7_3:68441168-68441187 | Msa1119500:intron | 35.0% | |
| AAGAATTGGGTGAAGAGAAA+AGG | - | chr7_3:68441182-68441201 | Msa1119500:intron | 35.0% | |
| AGAGAAAAGGAAAGGGAAAT+CGG | - | chr7_3:68441195-68441214 | Msa1119500:intron | 35.0% | |
| GGTTGAAAAGAAAGGGAAAT+TGG | - | chr7_3:68441252-68441271 | Msa1119500:intron | 35.0% | |
| GAGAAAGGGAAATTGAAAGA+AGG | - | chr7_3:68441307-68441326 | Msa1119500:CDS | 35.0% | |
| ! | AACTTGTACAATCGCTGATT+GGG | - | chr7_3:68441399-68441418 | Msa1119500:CDS | 35.0% |
| GAATTCCAATCAGAACTTCA+GGG | + | chr7_3:68441546-68441565 | None:intergenic | 35.0% | |
| TGAATTCCAATCAGAACTTC+AGG | + | chr7_3:68441547-68441566 | None:intergenic | 35.0% | |
| TCAAAGAGTCTCTGAGTAAT+GGG | + | chr7_3:68441607-68441626 | None:intergenic | 35.0% | |
| ATCAAAGAGTCTCTGAGTAA+TGG | + | chr7_3:68441608-68441627 | None:intergenic | 35.0% | |
| AGAAAAGGAAGAGATGTATC+GGG | + | chr7_3:68441673-68441692 | None:intergenic | 35.0% | |
| ! | CCTTTTTCTGCAGGAATATT+CGG | - | chr7_3:68441836-68441855 | Msa1119500:CDS | 35.0% |
| TTGGGTGAAGAGAAAAGGAA+AGG | - | chr7_3:68441187-68441206 | Msa1119500:intron | 40.0% | |
| TGGGTGAAGAGAAAAGGAAA+GGG | - | chr7_3:68441188-68441207 | Msa1119500:intron | 40.0% | |
| ATCGGAAGAAATATCGTCAG+AGG | - | chr7_3:68441213-68441232 | Msa1119500:intron | 40.0% | |
| TCGGAAGAAATATCGTCAGA+GGG | - | chr7_3:68441214-68441233 | Msa1119500:intron | 40.0% | |
| AGAGGGTGAGATAGAAGAAA+AGG | - | chr7_3:68441231-68441250 | Msa1119500:intron | 40.0% | |
| AAAGGGAAATTGGGAAACCT+AGG | - | chr7_3:68441262-68441281 | Msa1119500:intron | 40.0% | |
| AAGGGAAATTGGGAAACCTA+GGG | - | chr7_3:68441263-68441282 | Msa1119500:intron | 40.0% | |
| CTGAGGTAGAAGAAGAGAAA+GGG | - | chr7_3:68441293-68441312 | Msa1119500:CDS | 40.0% | |
| CAACTTGTACAATCGCTGAT+TGG | - | chr7_3:68441398-68441417 | Msa1119500:CDS | 40.0% | |
| TGACAGTGTGGACATTTACA+AGG | + | chr7_3:68441448-68441467 | None:intergenic | 40.0% | |
| AGTAGGAACCAAAAGGGTAA+CGG | + | chr7_3:68441476-68441495 | None:intergenic | 40.0% | |
| ! | TTGATCTTCCTTTTCTCGTG+CGG | - | chr7_3:68441623-68441642 | Msa1119500:CDS | 40.0% |
| !! | ACACGAGCTCTGAAAAGAAA+AGG | + | chr7_3:68441688-68441707 | None:intergenic | 40.0% |
| CCGAATATTCCTGCAGAAAA+AGG | + | chr7_3:68441839-68441858 | None:intergenic | 40.0% | |
| GCAGGAATATTCGGAAAAGT+TGG | - | chr7_3:68441845-68441864 | Msa1119500:CDS | 40.0% | |
| ! | ATTCGGAAAAGTTGGTCTCT+TGG | - | chr7_3:68441853-68441872 | Msa1119500:CDS | 40.0% |
| TATAAAGGGCAGCAACATGT+AGG | + | chr7_3:68441907-68441926 | None:intergenic | 40.0% | |
| TTGGGTGAAGAGAAAAGGAA+AGG | - | chr7_3:68441187-68441206 | Msa1119500:intron | 40.0% | |
| TGGGTGAAGAGAAAAGGAAA+GGG | - | chr7_3:68441188-68441207 | Msa1119500:intron | 40.0% | |
| ATCGGAAGAAATATCGTCAG+AGG | - | chr7_3:68441213-68441232 | Msa1119500:intron | 40.0% | |
| TCGGAAGAAATATCGTCAGA+GGG | - | chr7_3:68441214-68441233 | Msa1119500:intron | 40.0% | |
| AGAGGGTGAGATAGAAGAAA+AGG | - | chr7_3:68441231-68441250 | Msa1119500:intron | 40.0% | |
| AAAGGGAAATTGGGAAACCT+AGG | - | chr7_3:68441262-68441281 | Msa1119500:intron | 40.0% | |
| AAGGGAAATTGGGAAACCTA+GGG | - | chr7_3:68441263-68441282 | Msa1119500:intron | 40.0% | |
| CTGAGGTAGAAGAAGAGAAA+GGG | - | chr7_3:68441293-68441312 | Msa1119500:CDS | 40.0% | |
| CAACTTGTACAATCGCTGAT+TGG | - | chr7_3:68441398-68441417 | Msa1119500:CDS | 40.0% | |
| TGACAGTGTGGACATTTACA+AGG | + | chr7_3:68441448-68441467 | None:intergenic | 40.0% | |
| AGTAGGAACCAAAAGGGTAA+CGG | + | chr7_3:68441476-68441495 | None:intergenic | 40.0% | |
| ! | TTGATCTTCCTTTTCTCGTG+CGG | - | chr7_3:68441623-68441642 | Msa1119500:CDS | 40.0% |
| !! | ACACGAGCTCTGAAAAGAAA+AGG | + | chr7_3:68441688-68441707 | None:intergenic | 40.0% |
| CCGAATATTCCTGCAGAAAA+AGG | + | chr7_3:68441839-68441858 | None:intergenic | 40.0% | |
| GCAGGAATATTCGGAAAAGT+TGG | - | chr7_3:68441845-68441864 | Msa1119500:CDS | 40.0% | |
| ! | ATTCGGAAAAGTTGGTCTCT+TGG | - | chr7_3:68441853-68441872 | Msa1119500:CDS | 40.0% |
| TATAAAGGGCAGCAACATGT+AGG | + | chr7_3:68441907-68441926 | None:intergenic | 40.0% | |
| GGGTGAAGAGAAAGGGAAAT+CGG | - | chr7_3:68441066-68441085 | Msa1119500:CDS | 45.0% | |
| GGAAAACGAAAACCTAGCGT+TGG | - | chr7_3:68441087-68441106 | Msa1119500:CDS | 45.0% | |
| GGAGACTGAGAGAGAAGAAA+TGG | - | chr7_3:68441108-68441127 | Msa1119500:CDS | 45.0% | |
| ATTGGAAAACCCAGGGTTAG+AGG | - | chr7_3:68441147-68441166 | Msa1119500:CDS | 45.0% | |
| CTATCTTAGCCTCTAACCCT+GGG | + | chr7_3:68441159-68441178 | None:intergenic | 45.0% | |
| TCTATCTTAGCCTCTAACCC+TGG | + | chr7_3:68441160-68441179 | None:intergenic | 45.0% | |
| AAACCTAGGGTTAGAAGCTG+AGG | - | chr7_3:68441276-68441295 | Msa1119500:CDS | 45.0% | |
| GCTGAGGTAGAAGAAGAGAA+AGG | - | chr7_3:68441292-68441311 | Msa1119500:CDS | 45.0% | |
| GTGAAGCTACATGCTCTCAT+TGG | - | chr7_3:68441368-68441387 | Msa1119500:CDS | 45.0% | |
| GTAGGAACCAAAAGGGTAAC+GGG | + | chr7_3:68441475-68441494 | None:intergenic | 45.0% | |
| AACTACAACTGCGACGATGA+TGG | - | chr7_3:68441502-68441521 | Msa1119500:CDS | 45.0% | |
| !! | CTTCTGGGATGATGTCAATG+GGG | + | chr7_3:68441750-68441769 | None:intergenic | 45.0% |
| !! | CCTTCTGGGATGATGTCAAT+GGG | + | chr7_3:68441751-68441770 | None:intergenic | 45.0% |
| !! | ACCTTCTGGGATGATGTCAA+TGG | + | chr7_3:68441752-68441771 | None:intergenic | 45.0% |
| TCAATACTTTGCCTCCGTCA+CGG | - | chr7_3:68441929-68441948 | Msa1119500:CDS | 45.0% | |
| AACGAAAATTACGCCCGTGA+CGG | + | chr7_3:68441946-68441965 | None:intergenic | 45.0% | |
| GGGTGAAGAGAAAGGGAAAT+CGG | - | chr7_3:68441066-68441085 | Msa1119500:CDS | 45.0% | |
| GGAAAACGAAAACCTAGCGT+TGG | - | chr7_3:68441087-68441106 | Msa1119500:CDS | 45.0% | |
| GGAGACTGAGAGAGAAGAAA+TGG | - | chr7_3:68441108-68441127 | Msa1119500:CDS | 45.0% | |
| ATTGGAAAACCCAGGGTTAG+AGG | - | chr7_3:68441147-68441166 | Msa1119500:CDS | 45.0% | |
| CTATCTTAGCCTCTAACCCT+GGG | + | chr7_3:68441159-68441178 | None:intergenic | 45.0% | |
| TCTATCTTAGCCTCTAACCC+TGG | + | chr7_3:68441160-68441179 | None:intergenic | 45.0% | |
| AAACCTAGGGTTAGAAGCTG+AGG | - | chr7_3:68441276-68441295 | Msa1119500:CDS | 45.0% | |
| GCTGAGGTAGAAGAAGAGAA+AGG | - | chr7_3:68441292-68441311 | Msa1119500:CDS | 45.0% | |
| GTGAAGCTACATGCTCTCAT+TGG | - | chr7_3:68441368-68441387 | Msa1119500:CDS | 45.0% | |
| GTAGGAACCAAAAGGGTAAC+GGG | + | chr7_3:68441475-68441494 | None:intergenic | 45.0% | |
| AACTACAACTGCGACGATGA+TGG | - | chr7_3:68441502-68441521 | Msa1119500:CDS | 45.0% | |
| !! | CTTCTGGGATGATGTCAATG+GGG | + | chr7_3:68441750-68441769 | None:intergenic | 45.0% |
| !! | CCTTCTGGGATGATGTCAAT+GGG | + | chr7_3:68441751-68441770 | None:intergenic | 45.0% |
| !! | ACCTTCTGGGATGATGTCAA+TGG | + | chr7_3:68441752-68441771 | None:intergenic | 45.0% |
| TCAATACTTTGCCTCCGTCA+CGG | - | chr7_3:68441929-68441948 | Msa1119500:CDS | 45.0% | |
| AACGAAAATTACGCCCGTGA+CGG | + | chr7_3:68441946-68441965 | None:intergenic | 45.0% | |
| CTACCTCAGCTTCTAACCCT+AGG | + | chr7_3:68441282-68441301 | None:intergenic | 50.0% | |
| ! | TCATCGACCCGTTACCCTTT+TGG | - | chr7_3:68441465-68441484 | Msa1119500:CDS | 50.0% |
| ! | CACGACCCTGAAGTTCTGAT+TGG | - | chr7_3:68441538-68441557 | Msa1119500:CDS | 50.0% |
| ! | ATCTTCCTTTTCTCGTGCGG+AGG | - | chr7_3:68441626-68441645 | Msa1119500:CDS | 50.0% |
| AAAAGCCTCCGCACGAGAAA+AGG | + | chr7_3:68441634-68441653 | None:intergenic | 50.0% | |
| CCCATTGACATCATCCCAGA+AGG | - | chr7_3:68441748-68441767 | Msa1119500:CDS | 50.0% | |
| CAATACTTTGCCTCCGTCAC+GGG | - | chr7_3:68441930-68441949 | Msa1119500:CDS | 50.0% | |
| CTACCTCAGCTTCTAACCCT+AGG | + | chr7_3:68441282-68441301 | None:intergenic | 50.0% | |
| ! | TCATCGACCCGTTACCCTTT+TGG | - | chr7_3:68441465-68441484 | Msa1119500:CDS | 50.0% |
| ! | CACGACCCTGAAGTTCTGAT+TGG | - | chr7_3:68441538-68441557 | Msa1119500:CDS | 50.0% |
| ! | ATCTTCCTTTTCTCGTGCGG+AGG | - | chr7_3:68441626-68441645 | Msa1119500:CDS | 50.0% |
| AAAAGCCTCCGCACGAGAAA+AGG | + | chr7_3:68441634-68441653 | None:intergenic | 50.0% | |
| CCCATTGACATCATCCCAGA+AGG | - | chr7_3:68441748-68441767 | Msa1119500:CDS | 50.0% | |
| CAATACTTTGCCTCCGTCAC+GGG | - | chr7_3:68441930-68441949 | Msa1119500:CDS | 50.0% | |
| CTCTCTCAGTCTCCAACGCT+AGG | + | chr7_3:68441102-68441121 | None:intergenic | 55.0% | |
| !! | GTAACGGGTCGATGACAGTG+TGG | + | chr7_3:68441460-68441479 | None:intergenic | 55.0% |
| ! | TCTCGTGCGGAGGCTTTTCA+AGG | - | chr7_3:68441636-68441655 | Msa1119500:CDS | 55.0% |
| GAAAATTACGCCCGTGACGG+AGG | + | chr7_3:68441943-68441962 | None:intergenic | 55.0% | |
| CTCTCTCAGTCTCCAACGCT+AGG | + | chr7_3:68441102-68441121 | None:intergenic | 55.0% | |
| !! | GTAACGGGTCGATGACAGTG+TGG | + | chr7_3:68441460-68441479 | None:intergenic | 55.0% |
| ! | TCTCGTGCGGAGGCTTTTCA+AGG | - | chr7_3:68441636-68441655 | Msa1119500:CDS | 55.0% |
| GAAAATTACGCCCGTGACGG+AGG | + | chr7_3:68441943-68441962 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 68441064 | 68441970 | 68441064 | ID=Msa1119500;Name=Msa1119500 |
| chr7_3 | mRNA | 68441064 | 68441970 | 68441064 | ID=Msa1119500-mRNA-1;Parent=Msa1119500;Name=Msa1119500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|275 |
| chr7_3 | exon | 68441265 | 68441970 | 68441265 | ID=Msa1119500-mRNA-1:exon:17170;Parent=Msa1119500-mRNA-1 |
| chr7_3 | exon | 68441064 | 68441185 | 68441064 | ID=Msa1119500-mRNA-1:exon:17169;Parent=Msa1119500-mRNA-1 |
| chr7_3 | CDS | 68441265 | 68441970 | 68441265 | ID=Msa1119500-mRNA-1:cds;Parent=Msa1119500-mRNA-1 |
| chr7_3 | CDS | 68441064 | 68441185 | 68441064 | ID=Msa1119500-mRNA-1:cds;Parent=Msa1119500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
