AlfalfaGEDB | Msa1448510

M. sativa cultivar zhongmu-4 / Msa1448510

KEGG: K17506
GO: GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704
PFAM: PF00481.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448510	sp\|Q94AT1\|P2C76_ARATH	68.282	227	59	3	222	445	152	368	1.45e-97	302
Msa1448510	sp\|Q94AT1\|P2C76_ARATH	50.279	179	66	6	1	164	1	171	1.43e-42	158

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448510	A0A6A5PMW6	61.605	461	96	11	1	448	1	393	0.0	524

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002540	Msa1448510	0.953503	2.374273e-111	-8.615850e-47
Msa0008090	Msa1448510	0.800644	1.308181e-48	-8.615850e-47
Msa0016670	Msa1448510	0.816969	4.204840e-52	-8.615850e-47
Msa0017510	Msa1448510	0.813425	2.576709e-51	-8.615850e-47
Msa0032260	Msa1448510	0.801279	9.703223e-49	-8.615850e-47
Msa0046100	Msa1448510	0.823239	1.541612e-53	-8.615850e-47
Msa0047980	Msa1448510	0.838992	2.067715e-57	-8.615850e-47
Msa0052680	Msa1448510	0.807184	5.722933e-50	-8.615850e-47
Msa0052730	Msa1448510	0.802597	5.202349e-49	-8.615850e-47
Msa0061340	Msa1448510	0.801224	9.961244e-49	-8.615850e-47

Showing 1 to 10 of 182 entries

Previous1 2 3 4 5…19Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448510	MtrunA17_Chr3g0126511	88.261	230	14	3	222	448	145	364	3.91e-127	372
Msa1448510	MtrunA17_Chr3g0126511	97.561	164	4	0	1	164	1	164	8.15e-115	341
Msa1448510	MtrunA17_Chr3g0136711	60.215	186	64	1	239	424	105	280	5.58e-74	234
Msa1448510	MtrunA17_Chr3g0136711	56.471	85	37	0	80	164	20	104	1.03e-25	106
Msa1448510	MtrunA17_Chr1g0150451	60.753	186	63	1	239	424	148	323	9.26e-74	235
Msa1448510	MtrunA17_Chr1g0150451	48.214	112	51	2	53	164	43	147	1.63e-26	109
Msa1448510	MtrunA17_Chr1g0212961	57.219	187	66	3	239	425	166	338	1.78e-66	216
Msa1448510	MtrunA17_Chr1g0212961	42.405	158	62	4	26	163	16	164	1.02e-27	113
Msa1448510	MtrunA17_Chr4g0050381	33.807	352	142	11	77	424	12	276	1.09e-43	154
Msa1448510	MtrunA17_Chr2g0279151	44.974	189	88	5	239	424	105	280	2.59e-40	145

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1448510	AT5G53140.1	68.282	227	59	3	222	445	152	368	1.47e-98	302
Msa1448510	AT5G53140.1	50.279	179	66	6	1	164	1	171	1.45e-43	158
Msa1448510	AT5G53140.2	68.282	227	59	3	222	445	152	368	1.47e-98	302
Msa1448510	AT5G53140.2	50.279	179	66	6	1	164	1	171	1.45e-43	158
Msa1448510	AT4G31750.2	61.828	186	61	1	239	424	104	279	2.93e-74	235
Msa1448510	AT4G31750.2	54.118	85	39	0	80	164	19	103	1.94e-25	106
Msa1448510	AT4G31750.1	56.221	217	72	2	239	442	104	310	4.14e-74	235
Msa1448510	AT4G31750.1	54.118	85	39	0	80	164	19	103	2.84e-25	105
Msa1448510	AT4G31750.3	56.221	217	72	2	239	442	104	310	4.14e-74	235
Msa1448510	AT4G31750.3	54.118	85	39	0	80	164	19	103	2.84e-25	105

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

Find 109 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACACTTATAGCCAATT+TGG	0.238676	tig0032218:+31063	Msa1448510:intergenic
AAAGATAATTTCCGGGATGA+CGG	0.544350	tig0032218:-30782	Msa1448510:CDS
AACAAGGGCTGGACCCTCTG+TGG	0.584711	tig0032218:-33219	Msa1448510:CDS
AACCTAATAGAAGTGATGAG+CGG	0.688453	tig0032218:-30262	Msa1448510:CDS
AAGAGAATTGAGAATGCTGG+GGG	0.703336	tig0032218:-30239	Msa1448510:CDS
AAGAGTCTGCACATGCATGA+TGG	0.638768	tig0032218:-27640	Msa1448510:three_prime_UTR
AAGATGAAAGACTTAGCTGT+GGG	0.649895	tig0032218:-32241	Msa1448510:CDS
AAGCAGTAGAACCGTCATCC+CGG	0.586100	tig0032218:+30771	Msa1448510:intergenic
AAGGGCTGGACCCTCTGTGG+AGG	0.633314	tig0032218:-33216	Msa1448510:CDS
AATAAGTTTATGGCTTGTAG+AGG	0.583008	tig0032218:-27491	Msa1448510:three_prime_UTR

Showing 1 to 10 of 109 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAATTGCGAAAGAAATGTGA+AGG	+	tig0032218:27600-27619	None:intergenic	30.0%
AACACATATGGGGTTAAAAA+TGG	-	tig0032218:28567-28586	Msa1448510:intron	30.0%
TTATCAACTTACCAAATGAC+GGG	-	tig0032218:28687-28706	Msa1448510:intron	30.0%
TACTTGATCGCAATATAGAT+AGG	+	tig0032218:28916-28935	Msa1448510:intergenic	30.0%
AATATCATAGAAATCCTCCA+TGG	+	tig0032218:29023-29042	Msa1448510:intergenic	30.0%
ATTAAGACATCAACCATTGA+TGG	-	tig0032218:29040-29059	Msa1448510:intron	30.0%
TATTAAATGCTATGCACACT+TGG	+	tig0032218:29351-29370	Msa1448510:intergenic	30.0%
GTATAACTCACAAACTGTTT+CGG	+	tig0032218:29379-29398	Msa1448510:intergenic	30.0%
TTGTGAGTTATACATGTTTG+TGG	-	tig0032218:29386-29405	Msa1448510:intron	30.0%
GGAAAATAAGATATGAGAAG+AGG	+	tig0032218:29769-29788	Msa1448510:intergenic	30.0%

Showing 1 to 10 of 394 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
tig0032218	gene	27428	33804	27428	ID=Msa1448510;Name=Msa1448510
tig0032218	mRNA	27428	33804	27428	ID=Msa1448510-mRNA-1;Parent=Msa1448510;Name=Msa1448510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=289\|0.87\|0.88\|1\|0.75\|0.44\|9\|263\|448
tig0032218	exon	27428	27682	27428	ID=Msa1448510-mRNA-1:exon:16423;Parent=Msa1448510-mRNA-1
tig0032218	exon	27705	27904	27705	ID=Msa1448510-mRNA-1:exon:16422;Parent=Msa1448510-mRNA-1
tig0032218	exon	28357	28431	28357	ID=Msa1448510-mRNA-1:exon:16421;Parent=Msa1448510-mRNA-1
tig0032218	exon	29582	29673	29582	ID=Msa1448510-mRNA-1:exon:16420;Parent=Msa1448510-mRNA-1
tig0032218	exon	30222	30340	30222	ID=Msa1448510-mRNA-1:exon:16419;Parent=Msa1448510-mRNA-1
tig0032218	exon	30692	31169	30692	ID=Msa1448510-mRNA-1:exon:16418;Parent=Msa1448510-mRNA-1
tig0032218	exon	32138	32265	32138	ID=Msa1448510-mRNA-1:exon:16417;Parent=Msa1448510-mRNA-1
tig0032218	exon	33152	33419	33152	ID=Msa1448510-mRNA-1:exon:16416;Parent=Msa1448510-mRNA-1
tig0032218	exon	33521	33804	33521	ID=Msa1448510-mRNA-1:exon:16415;Parent=Msa1448510-mRNA-1
tig0032218	five_prime_UTR	33521	33804	33521	ID=Msa1448510-mRNA-1:five_prime_utr;Parent=Msa1448510-mRNA-1
tig0032218	five_prime_UTR	33415	33419	33415	ID=Msa1448510-mRNA-1:five_prime_utr;Parent=Msa1448510-mRNA-1
tig0032218	CDS	33152	33414	33152	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	CDS	32138	32265	32138	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	CDS	30692	31169	30692	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	CDS	30222	30340	30222	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	CDS	29582	29673	29582	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	CDS	28357	28431	28357	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	CDS	27713	27904	27713	ID=Msa1448510-mRNA-1:cds;Parent=Msa1448510-mRNA-1
tig0032218	three_prime_UTR	27705	27712	27705	ID=Msa1448510-mRNA-1:three_prime_utr;Parent=Msa1448510-mRNA-1
tig0032218	three_prime_UTR	27428	27682	27428	ID=Msa1448510-mRNA-1:three_prime_utr;Parent=Msa1448510-mRNA-1

Gene Sequence

>Msa1448510

ATGGTATGCGGAATTTTGATTCGAGCTGGAATTTTGACCAAGAGATTGTTGCCATTCAATTACGTTCGGAGGAAGTGTTTGCAAAGAGTTTTTGTTGTTCATTCACAATTTGTTGCGAATCGCGTGTTTAAGAATAAGTACATAGGGATGATGGTTGATACAGGTTCTATGTCAACAAGGGCTGGACCCTCTGTGGAGGATACTGTGTCCCACAAAGAGGATGATTCTGCTCGTTCTGGTTTTGTTACTGGTGGATGCAAGAGTGAAGATGAAAGACTTAGCTGTGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAACCATTGATGGCCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGCGCTGCTGAGTATTTGAAGGATCATCTTTTTGAGAATCTCATGAAGCATCCGAAGTTTTTGACAGATACCAAATTGGCTATAAGTGTGTTTGAATTTCACTTATTATTTCTTGTAATATTGAAGACATGTCACTTTTTACCATTTGTTTATACGTTCTTGTCAAATCTGACATCATCGGAACCATTTGAGTATGCATTTATTGTGTTAGTCCTATTTCATTCAAGGGGTCTAGGGTTGGTTCATGGAGTGCTTTTCATTTTTCAGTCTGTTATGTGGATGTTTATTAACTTAAGTAACCTTGCAGGTGAAACATATCAGCAGACGGATGCTGAGTTTTTGAACTCTGAAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCGTCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTTATATCAAAAGCCAAAAGACGTCTTAAACTTGAGATTTTGTTTTTGACAGCAATTGCTCTCTCTGAAGATCATAAACCTAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCCCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAAATCCAGGACCAGGAGATAGATGAAGAAACTGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAGGATGCTGTTTCTCTCGCACGCGCGGAAGAGGGAGCTGAGGCAGCTGCTCGTAAGTTAACGGAAGCTGCTTTTAATCGTGGTAGTGCAGATAACATTACTTGTATTGTGGTACGATTCAATCATGAAAAAAGACACGCAGCTAATCCTGATAAAGCTAGTACAGCTAGCAGTCAGCATGAGCAGAGACAATGA

Protein sequence

>Msa1448510

MVCGILIRAGILTKRLLPFNYVRRKCLQRVFVVHSQFVANRVFKNKYIGMMVDTGSMSTRAGPSVEDTVSHKEDDSARSGFVTGGCKSEDERLSCGYSSFRGKRVTMEDFYDIKTSTIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISVFEFHLLFLVILKTCHFLPFVYTFLSNLTSSEPFEYAFIVLVLFHSRGLGLVHGVLFIFQSVMWMFINLSNLAGETYQQTDAEFLNSEKDNFRDDGSTASTAVLVDNRLYVANVGDSRTVISKAKRRLKLEILFLTAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEETEVLVLASDGLWDVVQNEDAVSLARAEEGAEAAARKLTEAAFNRGSADNITCIVVRFNHEKRHAANPDKASTASSQHEQRQ*