AlfalfaGEDB | Msa1189990

M. sativa cultivar zhongmu-4 / Msa1189990

KEGG: K03553
GO: GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363
PFAM: PF00154.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189990	XP_013445459.1	92.823	418	8	2	1	396	1	418	0.0	783

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189990	sp\|Q39199\|RECAC_ARATH	74.112	394	73	4	6	370	15	408	0.0	574

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020630	Msa1189990	0.809031	2.313336e-50	-8.615850e-47
Msa0030000	Msa1189990	0.822228	2.650377e-53	-8.615850e-47
Msa0038350	Msa1189990	-0.805783	1.129829e-49	-8.615850e-47
Msa0055280	Msa1189990	0.803135	4.026816e-49	-8.615850e-47
Msa0068410	Msa1189990	0.805037	1.619282e-49	-8.615850e-47
Msa0075310	Msa1189990	0.804881	1.746276e-49	-8.615850e-47
Msa0091480	Msa1189990	0.810633	1.046035e-50	-8.615850e-47
Msa0091770	Msa1189990	0.809175	2.154272e-50	-8.615850e-47
Msa0114250	Msa1189990	0.805378	1.374408e-49	-8.615850e-47
Msa0159750	Msa1189990	0.810033	1.409577e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189990	MtrunA17_Chr8g0358881	92.823	418	8	2	1	396	1	418	0.0	783
Msa1189990	MtrunA17_Chr2g0299491	44.940	336	156	7	69	378	66	398	1.71e-81	256
Msa1189990	MtrunA17_Chr4g0071061	48.615	325	138	8	69	367	60	381	3.32e-81	255
Msa1189990	MtrunA17_Chr7g0257041	37.072	321	179	9	6	311	3	315	4.16e-53	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189990	AT1G79050.1	74.112	394	73	4	6	370	15	408	0.0	574
Msa1189990	AT1G79050.2	80.255	314	54	3	6	311	15	328	1.96e-177	498
Msa1189990	AT2G19490.1	46.341	328	147	7	66	367	58	382	8.65e-79	249
Msa1189990	AT3G10140.1	35.942	345	189	7	49	367	48	386	4.52e-52	179
Msa1189990	AT3G32920.1	50.495	202	79	5	97	297	12	193	1.20e-48	165
Msa1189990	AT3G32920.5	47.590	166	71	2	97	261	12	162	2.29e-39	139
Msa1189990	AT3G32920.3	50.360	139	53	3	97	234	12	135	1.89e-30	116
Msa1189990	AT3G32920.2	50.360	139	53	3	97	234	12	135	1.89e-30	116
Msa1189990	AT3G32920.4	52.703	74	35	0	161	234	9	82	6.18e-14	68.9

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Find 111 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTAGTGTTACAAGAT+TGG	0.415652	8_1:+32752412	Msa1189990:CDS
AAAATGAAAGTGTGGGGTTT+TGG	0.250782	8_1:-32750581	None:intergenic
AAAGAGTGGAACTTCTTGAT+AGG	0.465867	8_1:-32750638	None:intergenic
AAAGGTAGTGTTACAAGATT+GGG	0.449775	8_1:+32752413	Msa1189990:CDS
AAATAGAAGAGTAGAAGAAA+AGG	0.375081	8_1:-32750612	None:intergenic
AAATTGATATGCAGGTAGTT+CGG	0.498228	8_1:+32759060	Msa1189990:intron
AAGAGTACAACCAGCTTTAG+AGG	0.344065	8_1:-32753703	None:intergenic
AAGATTCAATGCGAACTCAA+CGG	0.646437	8_1:+32750695	Msa1189990:CDS
AAGGGCTCTTGGTACAGTTA+TGG	0.419313	8_1:+32756336	Msa1189990:CDS
AAGGTAAAATTGAAATTCAA+AGG	0.526847	8_1:+32759365	Msa1189990:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATGCAAGACTTAAATCA+GGG	+	chr8_1:32751008-32751027	Msa1189990:intron	30.0%
AACAGGGATCAATTGTTAAT+CGG	+	chr8_1:32751090-32751109	Msa1189990:intron	30.0%
GAACATATTTGAGAGAAAGT+TGG	+	chr8_1:32751444-32751463	Msa1189990:intron	30.0%
ATTTGTCTAAGTGGAATCTT+TGG	+	chr8_1:32751805-32751824	Msa1189990:intron	30.0%
TAATCATATGACAGAACAGA+AGG	-	chr8_1:32751880-32751899	None:intergenic	30.0%
AAAAGGTAGTGTTACAAGAT+TGG	+	chr8_1:32752412-32752431	Msa1189990:CDS	30.0%
AAAGGTAGTGTTACAAGATT+GGG	+	chr8_1:32752413-32752432	Msa1189990:CDS	30.0%
ATGTTGTCATTCATTTCCAT+TGG	+	chr8_1:32752706-32752725	Msa1189990:intron	30.0%
GTGAACTTATTTACATTCTC+TGG	+	chr8_1:32752728-32752747	Msa1189990:intron	30.0%
ATTTACATTCTCTGGATTCT+TGG	+	chr8_1:32752736-32752755	Msa1189990:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	32750424	32759501	32750424	ID=Msa1189990;Name=Msa1189990
chr8_1	mRNA	32750424	32759501	32750424	ID=Msa1189990-mRNA-1;Parent=Msa1189990;Name=Msa1189990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136\|0.90\|1\|1\|1\|1\|12\|320\|396
chr8_1	exon	32750424	32750757	32750424	ID=Msa1189990-mRNA-1:exon:10996;Parent=Msa1189990-mRNA-1
chr8_1	exon	32752365	32752456	32752365	ID=Msa1189990-mRNA-1:exon:10997;Parent=Msa1189990-mRNA-1
chr8_1	exon	32752612	32752687	32752612	ID=Msa1189990-mRNA-1:exon:10998;Parent=Msa1189990-mRNA-1
chr8_1	exon	32753028	32753090	32753028	ID=Msa1189990-mRNA-1:exon:10999;Parent=Msa1189990-mRNA-1
chr8_1	exon	32753196	32753325	32753196	ID=Msa1189990-mRNA-1:exon:11000;Parent=Msa1189990-mRNA-1
chr8_1	exon	32753444	32753529	32753444	ID=Msa1189990-mRNA-1:exon:11001;Parent=Msa1189990-mRNA-1
chr8_1	exon	32753627	32753752	32753627	ID=Msa1189990-mRNA-1:exon:11002;Parent=Msa1189990-mRNA-1
chr8_1	exon	32753895	32753999	32753895	ID=Msa1189990-mRNA-1:exon:11003;Parent=Msa1189990-mRNA-1
chr8_1	exon	32754191	32754247	32754191	ID=Msa1189990-mRNA-1:exon:11004;Parent=Msa1189990-mRNA-1
chr8_1	exon	32756291	32756367	32756291	ID=Msa1189990-mRNA-1:exon:11005;Parent=Msa1189990-mRNA-1
chr8_1	exon	32757068	32757140	32757068	ID=Msa1189990-mRNA-1:exon:11006;Parent=Msa1189990-mRNA-1
chr8_1	exon	32759074	32759501	32759074	ID=Msa1189990-mRNA-1:exon:11007;Parent=Msa1189990-mRNA-1
chr8_1	five_prime_UTR	32750424	32750559	32750424	ID=Msa1189990-mRNA-1:five_prime_utr;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32750560	32750757	32750560	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32752365	32752456	32752365	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32752612	32752687	32752612	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32753028	32753090	32753028	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32753196	32753325	32753196	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32753444	32753529	32753444	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32753627	32753752	32753627	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32753895	32753999	32753895	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32754191	32754247	32754191	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32756291	32756367	32756291	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32757068	32757140	32757068	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	CDS	32759074	32759181	32759074	ID=Msa1189990-mRNA-1:cds;Parent=Msa1189990-mRNA-1
chr8_1	three_prime_UTR	32759182	32759501	32759182	ID=Msa1189990-mRNA-1:three_prime_utr;Parent=Msa1189990-mRNA-1

Gene Sequence

>Msa1189990

ATGGACTTGGTGTTTTTTACTCCAAAACCCCACACTTTCATTTTGAAACCACCCTTTTCTTCTACTCTTCTATTTCATCCTATCAAGAAGTTCCACTCTTTGCGTCCTCTCTTTGCTTCTTCTTCTAAACATGTCAAGATTCAATGCGAACTCAACGGTTCTCTTTCCGCTGATTTTGACGCTCGTTTCGTTGATAGGCAAAAGGCACTGGAAGCAGCAATGAATGATATAAACAGCTCTTTCGGAAAAGGTAGTGTTACAAGATTGGGCAGTGCCGGTGGAGCATTAGTTGAAACTTTTCCCAGTGGATGTTTGGCTTTAGACTTTGCTTTAGGTGGTGGTCTTCCAAAAGGAAGAATTGTAGAGATATTTGGACCAGAAAGCAGTGGGAAGACCACTCTAGCACTTCATGCTATTGCAGAAGTACAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCAGAGCATGCTTTTGATCCAGCATATTCTAAAGCGGTAGGAGTGGATGTAGAAAATTTAATCGTGTGCCAACCAGATCATGGAGAGATGGCTCTTGAGATCGCAGATCGTATGTGTAGATCTGGCGCAATAGATCTCATTTGTGTGGACTCCGTCTCAGCTCTCACTCCCCGAGCAGAAGTTGAAGGAGAGATTGGAATGCAGCAAATGGGATTGCAGGCTCGTCTTATGAGCCAAGCTTTGCGTAAGATGTCTGGAAATGCCTCTAAAGCTGGTTGTACTCTTATATTTTTGAACCAAATAAGATATAAGATTGGTGTCTATTATGGAAATCCAGAAGTGACAAGTGGTGGAATTGCCTTGAAGTTTTTTGCATCGGTTCGACTAGAAATTCGTTCTATAGGGAAGATAAAGTCGGCCAAAGGAGATGAAGAAGTTGGCCTTAAAGTTCGTGTAAGAGTGCAAAAGAGCAAGGGTTGCATTTTAGATTGTGCAGAAATGATGAATATTGTCTTAAAGAAGGGCTCTTGGTACAGTTATGGGGACCATCGGTTAGGACAAGGAAGAGACAAAACATTGCAGTACTTGAAGGAGAACCCACATCTTCTAGAAGAAGTTGAAAAGGTAGTTCGGTCTTCAATGAATGATGGAACTAACCAAACAAGCTTTTCACATACGAAGAATAGTCCAGTGCTTCCTCAAGACGAAGATATATTTGAAGAAAGTCTGTGA

Protein sequence

>Msa1189990

MDLVFFTPKPHTFILKPPFSSTLLFHPIKKFHSLRPLFASSSKHVKIQCELNGSLSADFDARFVDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLALDFALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEVEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSIGKIKSAKGDEEVGLKVRVRVQKSKGCILDCAEMMNIVLKKGSWYSYGDHRLGQGRDKTLQYLKENPHLLEEVEKVVRSSMNDGTNQTSFSHTKNSPVLPQDEDIFEESL*