AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0114250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114250 MtrunA17_Chr1g0172361 92.857 280 19 1 1 279 1 280 0.0 543
Msa0114250 MtrunA17_Chr7g0249581 36.019 211 128 4 62 269 100 306 2.53e-31 121
Msa0114250 MtrunA17_Chr7g0271771 31.579 171 109 4 102 268 146 312 2.73e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114250 AT3G57190.1 51.698 265 121 5 25 285 12 273 6.09e-87 266
Msa0114250 AT5G36170.3 33.628 226 147 3 47 269 66 291 2.69e-34 129
Msa0114250 AT5G36170.4 33.628 226 147 3 47 269 65 290 2.90e-34 129
Msa0114250 AT5G36170.2 33.628 226 147 3 47 269 65 290 6.70e-34 129
Msa0114250 AT5G36170.1 33.628 226 147 3 47 269 66 291 7.07e-34 129
Msa0114250 AT1G56350.1 32.941 170 110 3 101 268 152 319 4.64e-17 81.6

Find 71 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTGAATATGGAAACTA+TGG 0.221201 1_3:-30761440 Msa0114250:exon
GAGATATCCAAGCTTCTTAA+AGG 0.276860 1_3:-30758857 Msa0114250:CDS
ATGTGCTTATGGCTATCTTT+TGG 0.289466 1_3:-30758523 Msa0114250:CDS
AATTAGAGACAATGTATTTC+CGG 0.295669 1_3:+30758192 None:intergenic
AGACCAAAACCTTGTGAATA+TGG 0.297820 1_3:-30761449 Msa0114250:exon
TCCTTCATAACCTTGTCTTT+TGG 0.304609 1_3:+30758614 None:intergenic
TTTCCATATTCACAAGGTTT+TGG 0.305814 1_3:+30761446 None:intergenic
CATTGCTAACAACAATAATA+AGG 0.325730 1_3:-30761290 Msa0114250:CDS
ATTCTTCTTCCTCAACCATT+TGG 0.327468 1_3:+30761363 None:intergenic
GAGATGAATGTTATTGATTA+CGG 0.351605 1_3:-30758938 Msa0114250:CDS
TTTGAATTTGAATGTGCTTA+TGG 0.354922 1_3:-30758534 Msa0114250:CDS
TGATATGGCAGGAGCATGTT+TGG 0.368531 1_3:-30758828 Msa0114250:CDS
TCTTAAAGGGCCATTTGATA+TGG 0.373189 1_3:-30758843 Msa0114250:CDS
AGATGAATGTTATTGATTAC+GGG 0.377034 1_3:-30758937 Msa0114250:CDS
CCCATCCAAGGTACATTTGT+AGG 0.393835 1_3:+30758637 None:intergenic
AAGGAGTTCACCACCTCATA+AGG 0.397909 1_3:-30758494 Msa0114250:CDS
GTTGTATGCATCAACAGCTT+TGG 0.415883 1_3:-30759554 Msa0114250:CDS
TCTATTGTTTATCTTACCAT+TGG 0.425090 1_3:+30758309 None:intergenic
TGCATCAACAGCTTTGGAAA+TGG 0.426629 1_3:-30759548 Msa0114250:CDS
AAATGGCCCTTTAAGAAGCT+TGG 0.428987 1_3:+30758850 None:intergenic
TTGGATTAAGCAGGAAGAAA+TGG 0.429971 1_3:-30759515 Msa0114250:CDS
CTTATTATTGTTGTTAGCAA+TGG 0.431641 1_3:+30761291 None:intergenic
AAGAAACGCATGAAGTAAAC+AGG 0.438034 1_3:+30758341 None:intergenic
CATTCGGAGAACCCCTTATG+AGG 0.442926 1_3:+30758481 None:intergenic
TTTGGTTACCTTATCTTCAA+AGG 0.448785 1_3:+30761522 None:intergenic
AATAGACGTGAGCAACATAC+TGG 0.450203 1_3:-30758888 Msa0114250:CDS
CTTTAGAGAATCAACTACTT+TGG 0.455693 1_3:+30759423 None:intergenic
AGGAGTTCACCACCTCATAA+GGG 0.456040 1_3:-30758493 Msa0114250:CDS
AGATATCCAAGCTTCTTAAA+GGG 0.458376 1_3:-30758856 Msa0114250:CDS
GTTTATCTTACCATTGGAAA+CGG 0.458725 1_3:+30758315 None:intergenic
TTGGTTACCTTATCTTCAAA+GGG 0.467344 1_3:+30761523 None:intergenic
GAATGTCGTTGGACTTAGTT+GGG 0.470599 1_3:+30759467 None:intergenic
TCCTACAAATGTACCTTGGA+TGG 0.475306 1_3:-30758638 Msa0114250:CDS
TTCCTTCGTTCAGCTCCAAA+TGG 0.477652 1_3:-30761378 Msa0114250:CDS
CTTTGAAAAGATGCCGGTAG+TGG 0.481878 1_3:+30758796 None:intergenic
AGAATGTCGTTGGACTTAGT+TGG 0.486932 1_3:+30759466 None:intergenic
AGAAGCAAGTTGGATTAAGC+AGG 0.495038 1_3:-30759524 Msa0114250:CDS
GACAGGTGTTTGATCGAGAA+TGG 0.495149 1_3:-30758582 Msa0114250:CDS
CAAAGTAGTTGATTCTCTAA+AGG 0.495997 1_3:-30759422 Msa0114250:CDS
AAACAATAGAGAATGTATTA+CGG 0.505614 1_3:-30758296 Msa0114250:three_prime_UTR
CGTTCAGCTCCAAATGGTTG+AGG 0.512689 1_3:-30761372 Msa0114250:CDS
CATGCTCCTGCCATATCAAA+TGG 0.512944 1_3:+30758833 None:intergenic
AAAGGGCCATTTGATATGGC+AGG 0.516727 1_3:-30758839 Msa0114250:CDS
ATGAAGGAAGGATTGTTGAC+AGG 0.525711 1_3:-30758599 Msa0114250:CDS
GCCAAAAGACAAGGTTATGA+AGG 0.538834 1_3:-30758615 Msa0114250:CDS
CAACGACATTCTTGTCAAGT+TGG 0.539891 1_3:-30759455 Msa0114250:CDS
CTTGTGAATATGGAAACTAT+GGG 0.542488 1_3:-30761439 Msa0114250:exon
TCAAGCTGAGAAGATTCATT+CGG 0.543915 1_3:+30758465 None:intergenic
TGGAAATGGAAGAAGCAAGT+TGG 0.549399 1_3:-30759534 Msa0114250:CDS
GAATGAATCTTCTCAGCTTG+AGG 0.567388 1_3:-30758463 Msa0114250:CDS
TCTAAAGGACTTGAGATACA+AGG 0.568284 1_3:-30759407 Msa0114250:intron
AAAGACAAGGTTATGAAGGA+AGG 0.569293 1_3:-30758611 Msa0114250:CDS
TGAAACCTTTGAAAAGATGC+CGG 0.574427 1_3:+30758790 None:intergenic
CAGCTCCTACAAATGTACCT+TGG 0.577693 1_3:-30758642 Msa0114250:CDS
CCATAGTTTCCATATTCACA+AGG 0.577993 1_3:+30761440 None:intergenic
TGGTACGTGATTCAGATCTG+TGG 0.584944 1_3:-30759495 Msa0114250:CDS
TAAGGATATCTACAAACAAG+TGG 0.586699 1_3:-30761272 Msa0114250:CDS
TTGGTTATAAAAGCCACTAC+CGG 0.590362 1_3:-30758809 Msa0114250:CDS
CCTACAAATGTACCTTGGAT+GGG 0.603204 1_3:-30758637 Msa0114250:CDS
CTTGGATGGGCCAAAAGACA+AGG 0.605632 1_3:-30758624 Msa0114250:CDS
CAACTTGACAAGAATGTCGT+TGG 0.606247 1_3:+30759456 None:intergenic
TTACAATTAGGTAGTACGAA+AGG 0.607299 1_3:+30758429 None:intergenic
AGGAAGAAGAATCCACGTGT+TGG 0.618023 1_3:-30761352 Msa0114250:CDS
CACAAGAACAGTCCAACACG+TGG 0.629378 1_3:+30761340 None:intergenic
GGAGTTCACCACCTCATAAG+GGG 0.638808 1_3:-30758492 Msa0114250:CDS
AAGGATATCTACAAACAAGT+GGG 0.646261 1_3:-30761271 Msa0114250:intron
GGTACGTGATTCAGATCTGT+GGG 0.649395 1_3:-30759494 Msa0114250:CDS
AACCATTTGGAGCTGAACGA+AGG 0.651020 1_3:+30761376 None:intergenic
TCGGAGAACCCCTTATGAGG+TGG 0.658387 1_3:+30758484 None:intergenic
AGGTGTTTGATCGAGAATGG+AGG 0.662357 1_3:-30758579 Msa0114250:CDS
TTGTGAATATGGAAACTATG+GGG 0.711630 1_3:-30761438 Msa0114250:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATATAAAATGAAAAA+AGG + chr1_3:30760706-30760725 None:intergenic 10.0%
!! TAGAAGTGAAAATAAATAAT+AGG + chr1_3:30760388-30760407 None:intergenic 15.0%
!! ATAAGAATTACATTACATTA+CGG - chr1_3:30760590-30760609 Msa0114250:intron 15.0%
!!! TTTGGATTTTTTAGATATAT+TGG + chr1_3:30761489-30761508 None:intergenic 15.0%
!!! AAAATAATGTTGACATTTTT+TGG + chr1_3:30761507-30761526 None:intergenic 15.0%
!!! ATTATTTTAGTTGTTCAGTT+TGG - chr1_3:30758566-30758585 Msa0114250:CDS 20.0%
!! AAGACTAAGTACTTAAAATA+GGG + chr1_3:30758715-30758734 None:intergenic 20.0%
!! TAAGACTAAGTACTTAAAAT+AGG + chr1_3:30758716-30758735 None:intergenic 20.0%
!! TTTGAAAAGAGTTTATGAAT+AGG - chr1_3:30758859-30758878 Msa0114250:CDS 20.0%
!! ATTATATATCATAACTACCA+AGG + chr1_3:30759509-30759528 None:intergenic 20.0%
!!! GTGCTAATTTTTTTTGTTTT+TGG - chr1_3:30759852-30759871 Msa0114250:intron 20.0%
!! TCATGATTTAAGGAATTATT+AGG + chr1_3:30760083-30760102 None:intergenic 20.0%
!! TAAGAATTACATTACATTAC+GGG - chr1_3:30760591-30760610 Msa0114250:intron 20.0%
!! TTCAAAGGTTTCATATATAA+AGG - chr1_3:30760947-30760966 Msa0114250:intron 20.0%
!! TATGAATAAAAAAATAGCAG+CGG + chr1_3:30760985-30761004 None:intergenic 20.0%
!! CAAAGACTAATATGAAATAT+AGG + chr1_3:30761015-30761034 None:intergenic 20.0%
!!! GAAAAATCAGTTTTACAATT+AGG + chr1_3:30761313-30761332 None:intergenic 20.0%
!! AAACAATAGAGAATGTATTA+CGG - chr1_3:30761431-30761450 Msa0114250:CDS 20.0%
!!! AACATTATTTTCAGTTTTTC+CGG - chr1_3:30761516-30761535 Msa0114250:five_prime_UTR 20.0%
! AAAAACAAACAAACACTACT+AGG - chr1_3:30758253-30758272 Msa0114250:three_prime_UTR 25.0%
!! CTTATTATTGTTGTTAGCAA+TGG + chr1_3:30758439-30758458 None:intergenic 25.0%
! CATTGCTAACAACAATAATA+AGG - chr1_3:30758437-30758456 Msa0114250:CDS 25.0%
!!! TGTTTTCTCTTTTTTATGTC+TGG - chr1_3:30758537-30758556 Msa0114250:CDS 25.0%
! TTACTATATCACTTTCAAAG+TGG - chr1_3:30758733-30758752 Msa0114250:intron 25.0%
! TACTATATCACTTTCAAAGT+GGG - chr1_3:30758734-30758753 Msa0114250:intron 25.0%
! AAATCATATCTATCCGATTT+GGG + chr1_3:30758840-30758859 None:intergenic 25.0%
! AAAATCATATCTATCCGATT+TGG + chr1_3:30758841-30758860 None:intergenic 25.0%
!! ACATATTTTTCATATCAGAC+TGG + chr1_3:30759154-30759173 None:intergenic 25.0%
! GTCTGATATGAAAAATATGT+TGG - chr1_3:30759154-30759173 Msa0114250:intron 25.0%
! TGATATGAAAAATATGTTGG+TGG - chr1_3:30759157-30759176 Msa0114250:intron 25.0%
! ATAGATGACATAATATACCA+CGG + chr1_3:30759592-30759611 None:intergenic 25.0%
! GCTCAAAGTAAAATATTAGT+TGG - chr1_3:30759799-30759818 Msa0114250:intron 25.0%
!!! ATTACACATTGACTTTAATG+TGG + chr1_3:30759994-30760013 None:intergenic 25.0%
! TCAATGTTTGTCATGATTTA+AGG + chr1_3:30760093-30760112 None:intergenic 25.0%
! AAAGTTTAGTTGAAAGTGAT+GGG + chr1_3:30760358-30760377 None:intergenic 25.0%
! AACCATAATTATCTCATACA+GGG + chr1_3:30760491-30760510 None:intergenic 25.0%
! TAACCATAATTATCTCATAC+AGG + chr1_3:30760492-30760511 None:intergenic 25.0%
! AAAATTCCTAGATTTGTGAA+AGG - chr1_3:30760554-30760573 Msa0114250:intron 25.0%
!! GAGATGAATGTTATTGATTA+CGG - chr1_3:30760789-30760808 Msa0114250:intron 25.0%
!! AGATGAATGTTATTGATTAC+GGG - chr1_3:30760790-30760809 Msa0114250:intron 25.0%
! TTTGAATTTGAATGTGCTTA+TGG - chr1_3:30761193-30761212 Msa0114250:intron 25.0%
! TCTATTGTTTATCTTACCAT+TGG + chr1_3:30761421-30761440 None:intergenic 25.0%
! AATTAGAGACAATGTATTTC+CGG + chr1_3:30761538-30761557 None:intergenic 25.0%
!! ACATTTTCCCTTTGAAGATA+AGG - chr1_3:30758197-30758216 Msa0114250:three_prime_UTR 30.0%
TTGGTTACCTTATCTTCAAA+GGG + chr1_3:30758207-30758226 None:intergenic 30.0%
TTTGGTTACCTTATCTTCAA+AGG + chr1_3:30758208-30758227 None:intergenic 30.0%
AGATAAGGTAACCAAAAAAG+TGG - chr1_3:30758212-30758231 Msa0114250:three_prime_UTR 30.0%
AAAAAAGTGGAGCGAAATTT+CGG - chr1_3:30758225-30758244 Msa0114250:three_prime_UTR 30.0%
! TTTCCATATTCACAAGGTTT+TGG + chr1_3:30758284-30758303 None:intergenic 30.0%
CTTGTGAATATGGAAACTAT+GGG - chr1_3:30758288-30758307 Msa0114250:three_prime_UTR 30.0%
TTGTGAATATGGAAACTATG+GGG - chr1_3:30758289-30758308 Msa0114250:three_prime_UTR 30.0%
TAAGGATATCTACAAACAAG+TGG - chr1_3:30758455-30758474 Msa0114250:CDS 30.0%
AAGGATATCTACAAACAAGT+GGG - chr1_3:30758456-30758475 Msa0114250:CDS 30.0%
! CACAAAAAAAGACAGCATTT+TGG + chr1_3:30758488-30758507 None:intergenic 30.0%
GGTGTTTGATTATGTTTCAT+AGG - chr1_3:30758587-30758606 Msa0114250:CDS 30.0%
ATGTTTCATAGGAGTGAAAA+AGG - chr1_3:30758598-30758617 Msa0114250:CDS 30.0%
TGTTTCATAGGAGTGAAAAA+GGG - chr1_3:30758599-30758618 Msa0114250:CDS 30.0%
CTAATTCATCCTTACAAAAC+CGG + chr1_3:30758906-30758925 None:intergenic 30.0%
! TTTTCATATCAGACTGGTAA+AGG + chr1_3:30759148-30759167 None:intergenic 30.0%
! TATGAAAAATATGTTGGTGG+AGG - chr1_3:30759160-30759179 Msa0114250:intron 30.0%
GATCTACTTATCTACTTAGA+AGG + chr1_3:30759190-30759209 None:intergenic 30.0%
ATTAATTCTCTGTATGCCTA+CGG - chr1_3:30759385-30759404 Msa0114250:intron 30.0%
TGATATATAATGTGCAGATG+TGG - chr1_3:30759518-30759537 Msa0114250:CDS 30.0%
!! CTTGTTAGTTTGAATTTTGC+TGG - chr1_3:30759623-30759642 Msa0114250:intron 30.0%
! TTGAATTTTGCTGGAGAATT+TGG - chr1_3:30759632-30759651 Msa0114250:intron 30.0%
CTTGTTTCATCAATGATCAT+TGG - chr1_3:30759698-30759717 Msa0114250:intron 30.0%
ACAAACATTGAAATATGCTC+AGG - chr1_3:30760102-30760121 Msa0114250:intron 30.0%
! CTTTAGAGAATCAACTACTT+TGG + chr1_3:30760307-30760326 None:intergenic 30.0%
! CAAAGTAGTTGATTCTCTAA+AGG - chr1_3:30760305-30760324 Msa0114250:intron 30.0%
GAAAGTTTAGTTGAAAGTGA+TGG + chr1_3:30760359-30760378 None:intergenic 30.0%
TTCCCTGTATGAGATAATTA+TGG - chr1_3:30760486-30760505 Msa0114250:intron 30.0%
AAAAAGCCTTTCACAAATCT+AGG + chr1_3:30760563-30760582 None:intergenic 30.0%
AGATATCCAAGCTTCTTAAA+GGG - chr1_3:30760871-30760890 Msa0114250:intron 30.0%
TTACAATTAGGTAGTACGAA+AGG + chr1_3:30761301-30761320 None:intergenic 30.0%
GTTTATCTTACCATTGGAAA+CGG + chr1_3:30761415-30761434 None:intergenic 30.0%
!!! GAAATTTCGCTCCACTTTTT+TGG + chr1_3:30758226-30758245 None:intergenic 35.0%
AGACCAAAACCTTGTGAATA+TGG - chr1_3:30758278-30758297 Msa0114250:three_prime_UTR 35.0%
CCATAGTTTCCATATTCACA+AGG + chr1_3:30758290-30758309 None:intergenic 35.0%
CCTTGTGAATATGGAAACTA+TGG - chr1_3:30758287-30758306 Msa0114250:three_prime_UTR 35.0%
ATTCTTCTTCCTCAACCATT+TGG + chr1_3:30758367-30758386 None:intergenic 35.0%
!! TGTGTAAGAGCATGTACTTT+TGG - chr1_3:30758504-30758523 Msa0114250:CDS 35.0%
ATGTTAACAGAACTTATCCC+CGG - chr1_3:30758758-30758777 Msa0114250:intron 35.0%
!! CGGTTTTGTAAGGATGAATT+AGG - chr1_3:30758904-30758923 Msa0114250:CDS 35.0%
! TTTTCATATCAGACTGAGAC+TGG + chr1_3:30759076-30759095 None:intergenic 35.0%
TATCAGAGACTATTCCCTTA+AGG + chr1_3:30759220-30759239 None:intergenic 35.0%
ACACGGGTGAAATATCTATA+TGG + chr1_3:30759289-30759308 None:intergenic 35.0%
! AACCTTGGTAGTTATAACCT+TGG - chr1_3:30759489-30759508 Msa0114250:CDS 35.0%
TACCAAGGTTATAACTACCA+AGG + chr1_3:30759494-30759513 None:intergenic 35.0%
TGCAGATGTGGTATAAACAA+GGG - chr1_3:30759530-30759549 Msa0114250:CDS 35.0%
!!! TGATTTAGTTTTCCCCTTTC+TGG - chr1_3:30759726-30759745 Msa0114250:intron 35.0%
GGTTAGAAATTCACCTCTTA+AGG - chr1_3:30759889-30759908 Msa0114250:intron 35.0%
ACCTCTTAAGGTGATTAAGT+GGG - chr1_3:30759901-30759920 Msa0114250:intron 35.0%
AGAAGTAGTTATCTACAGCT+CGG + chr1_3:30760052-30760071 None:intergenic 35.0%
!! CAGGTTTATTTTCCCTAAGA+AGG - chr1_3:30760121-30760140 Msa0114250:intron 35.0%
! GTCTTCGATTTTCCTTCTTA+GGG + chr1_3:30760136-30760155 None:intergenic 35.0%
! TGTCTTCGATTTTCCTTCTT+AGG + chr1_3:30760137-30760156 None:intergenic 35.0%
TTGGATTAAGCAGGAAGAAA+TGG - chr1_3:30760212-30760231 Msa0114250:intron 35.0%
TCTAAAGGACTTGAGATACA+AGG - chr1_3:30760320-30760339 Msa0114250:intron 35.0%
GAGATATCCAAGCTTCTTAA+AGG - chr1_3:30760870-30760889 Msa0114250:intron 35.0%
TCTTAAAGGGCCATTTGATA+TGG - chr1_3:30760884-30760903 Msa0114250:intron 35.0%
TTGGTTATAAAAGCCACTAC+CGG - chr1_3:30760918-30760937 Msa0114250:intron 35.0%
! TGAAACCTTTGAAAAGATGC+CGG + chr1_3:30760940-30760959 None:intergenic 35.0%
! TTTTGCTTGAATCAAGCTCT+GGG - chr1_3:30761057-30761076 Msa0114250:intron 35.0%
! TCCTTCATAACCTTGTCTTT+TGG + chr1_3:30761116-30761135 None:intergenic 35.0%
AAAGACAAGGTTATGAAGGA+AGG - chr1_3:30761116-30761135 Msa0114250:intron 35.0%
! ATGTGCTTATGGCTATCTTT+TGG - chr1_3:30761204-30761223 Msa0114250:intron 35.0%
! TGTGCTTATGGCTATCTTTT+GGG - chr1_3:30761205-30761224 Msa0114250:intron 35.0%
TCAAGCTGAGAAGATTCATT+CGG + chr1_3:30761265-30761284 None:intergenic 35.0%
!!! GTAAACAGGTTAGTTTTCAG+AGG + chr1_3:30761375-30761394 None:intergenic 35.0%
AAGAAACGCATGAAGTAAAC+AGG + chr1_3:30761389-30761408 None:intergenic 35.0%
! GTTTCTTTTTCCGTTTCCAA+TGG - chr1_3:30761402-30761421 Msa0114250:CDS 35.0%
ATAGGAGTGAAAAAGGGTAG+TGG - chr1_3:30758605-30758624 Msa0114250:CDS 40.0%
! ACCTAACAAACCGGTTCTAT+GGG + chr1_3:30758684-30758703 None:intergenic 40.0%
AATTGGGAGGTTGAGAACAA+AGG + chr1_3:30758788-30758807 None:intergenic 40.0%
!! AGTGTTGGCTGCTAACAATT+GGG + chr1_3:30758804-30758823 None:intergenic 40.0%
AATTGTTAGCAGCCAACACT+CGG - chr1_3:30758804-30758823 Msa0114250:CDS 40.0%
! ACATAGGTGTCACGAAAATC+AGG + chr1_3:30758931-30758950 None:intergenic 40.0%
! TGATTTTCGTGACACCTATG+TGG - chr1_3:30758930-30758949 Msa0114250:CDS 40.0%
! GATTTTCGTGACACCTATGT+GGG - chr1_3:30758931-30758950 Msa0114250:CDS 40.0%
TATCAGACTGAGACTGGTAA+AGG + chr1_3:30759070-30759089 None:intergenic 40.0%
TATACTCCAGTCCTCCTTAT+AGG - chr1_3:30759097-30759116 Msa0114250:intron 40.0%
ATACTCCAGTCCTCCTTATA+GGG - chr1_3:30759098-30759117 Msa0114250:intron 40.0%
AGTAGATCTCACTGACCTTA+AGG - chr1_3:30759202-30759221 Msa0114250:intron 40.0%
GTAGATCTCACTGACCTTAA+GGG - chr1_3:30759203-30759222 Msa0114250:intron 40.0%
GGAATAGTCTCTGATACTTG+CGG - chr1_3:30759224-30759243 Msa0114250:intron 40.0%
GAATAGTCTCTGATACTTGC+GGG - chr1_3:30759225-30759244 Msa0114250:intron 40.0%
TCTACCAGTGTCACAAATAG+TGG - chr1_3:30759340-30759359 Msa0114250:intron 40.0%
CTACCAGTGTCACAAATAGT+GGG - chr1_3:30759341-30759360 Msa0114250:intron 40.0%
GAGCAGATCATTTATTCCGT+AGG + chr1_3:30759404-30759423 None:intergenic 40.0%
! TGAAAAGAGCACATGGTAAG+AGG + chr1_3:30759466-30759485 None:intergenic 40.0%
! GGTTATCTGAAAAGAGCACA+TGG + chr1_3:30759473-30759492 None:intergenic 40.0%
! GTGCTCTTTTCAGATAACCT+TGG - chr1_3:30759474-30759493 Msa0114250:CDS 40.0%
GTGCAGATGTGGTATAAACA+AGG - chr1_3:30759529-30759548 Msa0114250:CDS 40.0%
CTTACAGTAAAGAGAAACCG+TGG - chr1_3:30759572-30759591 Msa0114250:CDS 40.0%
! GAGAATTTGGCTTCTTGTAG+TGG - chr1_3:30759645-30759664 Msa0114250:intron 40.0%
! TAGGGCATCAAATCCAGAAA+GGG + chr1_3:30759742-30759761 None:intergenic 40.0%
! TTAGGGCATCAAATCCAGAA+AGG + chr1_3:30759743-30759762 None:intergenic 40.0%
TTCTGGATTTGATGCCCTAA+CGG - chr1_3:30759743-30759762 Msa0114250:intron 40.0%
GCTGAATACTCGTGATTGTT+TGG - chr1_3:30759821-30759840 Msa0114250:intron 40.0%
GAGGTGAATTTCTAACCACT+GGG + chr1_3:30759886-30759905 None:intergenic 40.0%
AGAGGTGAATTTCTAACCAC+TGG + chr1_3:30759887-30759906 None:intergenic 40.0%
CACCTCTTAAGGTGATTAAG+TGG - chr1_3:30759900-30759919 Msa0114250:intron 40.0%
TCCCACTTAATCACCTTAAG+AGG + chr1_3:30759905-30759924 None:intergenic 40.0%
GTTGTATGCATCAACAGCTT+TGG - chr1_3:30760173-30760192 Msa0114250:intron 40.0%
!! TGCATCAACAGCTTTGGAAA+TGG - chr1_3:30760179-30760198 Msa0114250:intron 40.0%
TGGAAATGGAAGAAGCAAGT+TGG - chr1_3:30760193-30760212 Msa0114250:intron 40.0%
! AGAAGCAAGTTGGATTAAGC+AGG - chr1_3:30760203-30760222 Msa0114250:intron 40.0%
GAATGTCGTTGGACTTAGTT+GGG + chr1_3:30760263-30760282 None:intergenic 40.0%
AGAATGTCGTTGGACTTAGT+TGG + chr1_3:30760264-30760283 None:intergenic 40.0%
CAACTTGACAAGAATGTCGT+TGG + chr1_3:30760274-30760293 None:intergenic 40.0%
CAACGACATTCTTGTCAAGT+TGG - chr1_3:30760272-30760291 Msa0114250:intron 40.0%
CATTACATTACGGGTCTGTT+TGG - chr1_3:30760600-30760619 Msa0114250:intron 40.0%
ACCTGCTTGACATACAACAA+GGG + chr1_3:30760738-30760757 None:intergenic 40.0%
TACCTGCTTGACATACAACA+AGG + chr1_3:30760739-30760758 None:intergenic 40.0%
AATAGACGTGAGCAACATAC+TGG - chr1_3:30760839-30760858 Msa0114250:intron 40.0%
! AAATGGCCCTTTAAGAAGCT+TGG + chr1_3:30760880-30760899 None:intergenic 40.0%
! CTTTTGCTTGAATCAAGCTC+TGG - chr1_3:30761056-30761075 Msa0114250:intron 40.0%
TCCTACAAATGTACCTTGGA+TGG - chr1_3:30761089-30761108 Msa0114250:intron 40.0%
CCTACAAATGTACCTTGGAT+GGG - chr1_3:30761090-30761109 Msa0114250:intron 40.0%
GCCAAAAGACAAGGTTATGA+AGG - chr1_3:30761112-30761131 Msa0114250:intron 40.0%
ATGAAGGAAGGATTGTTGAC+AGG - chr1_3:30761128-30761147 Msa0114250:intron 40.0%
! GTGCTTATGGCTATCTTTTG+GGG - chr1_3:30761206-30761225 Msa0114250:intron 40.0%
! TGCTTATGGCTATCTTTTGG+GGG - chr1_3:30761207-30761226 Msa0114250:intron 40.0%
GAATGAATCTTCTCAGCTTG+AGG - chr1_3:30761264-30761283 Msa0114250:intron 40.0%
TTCCTTCGTTCAGCTCCAAA+TGG - chr1_3:30758349-30758368 Msa0114250:three_prime_UTR 45.0%
! AACCATTTGGAGCTGAACGA+AGG + chr1_3:30758354-30758373 None:intergenic 45.0%
AGGAAGAAGAATCCACGTGT+TGG - chr1_3:30758375-30758394 Msa0114250:CDS 45.0%
! CCTAACAAACCGGTTCTATG+GGG + chr1_3:30758683-30758702 None:intergenic 45.0%
! CACCTAACAAACCGGTTCTA+TGG + chr1_3:30758685-30758704 None:intergenic 45.0%
!! TAGAACCGGTTTGTTAGGTG+AGG - chr1_3:30758685-30758704 Msa0114250:intron 45.0%
!! GAGTGTTGGCTGCTAACAAT+TGG + chr1_3:30758805-30758824 None:intergenic 45.0%
! CGGTGGATTTAGTCCCAAAT+CGG - chr1_3:30758824-30758843 Msa0114250:CDS 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG + chr1_3:30758897-30758916 None:intergenic 45.0%
AGCAACTTGACCCTATAAGG+AGG + chr1_3:30759033-30759052 None:intergenic 45.0%
AGCAGCAACTTGACCCTATA+AGG + chr1_3:30759036-30759055 None:intergenic 45.0%
AGCAACTTGACCCTATAAGG+AGG + chr1_3:30759033-30759052 None:intergenic 45.0%
AGCAGCAACTTGACCCTATA+AGG + chr1_3:30759036-30759055 None:intergenic 45.0%
! GTGGGAGCTTCATGTTTCTA+AGG - chr1_3:30759359-30759378 Msa0114250:intron 45.0%
! AGGGCATCAAATCCAGAAAG+GGG + chr1_3:30759741-30759760 None:intergenic 45.0%
CATGACAAAAGCCACCGTTA+GGG + chr1_3:30759760-30759779 None:intergenic 45.0%
! GTGGCTTTTGTCATGCACAA+TGG - chr1_3:30759765-30759784 Msa0114250:intron 45.0%
!! TTTTTGGTCAAGTAGCCCAG+TGG - chr1_3:30759868-30759887 Msa0114250:intron 45.0%
TGAGCTTAGCTCAAGTGGTA+GGG + chr1_3:30759943-30759962 None:intergenic 45.0%
TACCACTTGAGCTAAGCTCA+CGG - chr1_3:30759943-30759962 Msa0114250:intron 45.0%
TGGTACGTGATTCAGATCTG+TGG - chr1_3:30760232-30760251 Msa0114250:intron 45.0%
GGTACGTGATTCAGATCTGT+GGG - chr1_3:30760233-30760252 Msa0114250:intron 45.0%
! TCCCTTGTTGTATGTCAAGC+AGG - chr1_3:30760734-30760753 Msa0114250:intron 45.0%
GTTGTATGTCAAGCAGGTAG+AGG - chr1_3:30760740-30760759 Msa0114250:intron 45.0%
AAAGGGCCATTTGATATGGC+AGG - chr1_3:30760888-30760907 Msa0114250:intron 45.0%
CATGCTCCTGCCATATCAAA+TGG + chr1_3:30760897-30760916 None:intergenic 45.0%
! TGATATGGCAGGAGCATGTT+TGG - chr1_3:30760899-30760918 Msa0114250:intron 45.0%
! CTTTGAAAAGATGCCGGTAG+TGG + chr1_3:30760934-30760953 None:intergenic 45.0%
! CACTACCGGCATCTTTTCAA+AGG - chr1_3:30760932-30760951 Msa0114250:intron 45.0%
CAGCTCCTACAAATGTACCT+TGG - chr1_3:30761085-30761104 Msa0114250:intron 45.0%
CCCATCCAAGGTACATTTGT+AGG + chr1_3:30761093-30761112 None:intergenic 45.0%
GACAGGTGTTTGATCGAGAA+TGG - chr1_3:30761145-30761164 Msa0114250:intron 45.0%
AGGTGTTTGATCGAGAATGG+AGG - chr1_3:30761148-30761167 Msa0114250:intron 45.0%
!! GGCTATCTTTTGGGGGAAAA+AGG - chr1_3:30761214-30761233 Msa0114250:intron 45.0%
AAGGAGTTCACCACCTCATA+AGG - chr1_3:30761233-30761252 Msa0114250:intron 45.0%
AGGAGTTCACCACCTCATAA+GGG - chr1_3:30761234-30761253 Msa0114250:intron 45.0%
!! ATTAAAAACTAATAATAATT+TGG + chr1_3:30760675-30760694 None:intergenic 5.0%
CGTTCAGCTCCAAATGGTTG+AGG - chr1_3:30758355-30758374 Msa0114250:exon 50.0%
CACAAGAACAGTCCAACACG+TGG + chr1_3:30758390-30758409 None:intergenic 50.0%
! GGAGTGAAAAAGGGTAGTGG+AGG - chr1_3:30758608-30758627 Msa0114250:CDS 50.0%
! TTGTGTAGGCTCGGTCACAA+GGG + chr1_3:30758660-30758679 None:intergenic 50.0%
TCTATGGGGTTGTGTAGGCT+CGG + chr1_3:30758669-30758688 None:intergenic 50.0%
CCTACACAACCCCATAGAAC+CGG - chr1_3:30758671-30758690 Msa0114250:intron 50.0%
!! CCCCATAGAACCGGTTTGTT+AGG - chr1_3:30758680-30758699 Msa0114250:intron 50.0%
GCAGTCCTCACCTAACAAAC+CGG + chr1_3:30758693-30758712 None:intergenic 50.0%
TTGAGAACAAAGGCGAACCG+GGG + chr1_3:30758778-30758797 None:intergenic 50.0%
GTTGAGAACAAAGGCGAACC+GGG + chr1_3:30758779-30758798 None:intergenic 50.0%
GGTTGAGAACAAAGGCGAAC+CGG + chr1_3:30758780-30758799 None:intergenic 50.0%
GTTGGCTGCTAACAATTGGG+AGG + chr1_3:30758801-30758820 None:intergenic 50.0%
GGACTAAATCCACCGAGTGT+TGG + chr1_3:30758819-30758838 None:intergenic 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG - chr1_3:30758894-30758913 Msa0114250:CDS 50.0%
CCTAACAGAGTCACCCACAT+AGG + chr1_3:30758947-30758966 None:intergenic 50.0%
CCTATGTGGGTGACTCTGTT+AGG - chr1_3:30758944-30758963 Msa0114250:CDS 50.0%
CTCTGTTAGGATTCGAACCC+AGG - chr1_3:30758957-30758976 Msa0114250:CDS 50.0%
CTCCTCCAGTCCTCCTTATA+GGG - chr1_3:30759020-30759039 Msa0114250:intron 50.0%
CTTGACCCTATAAGGAGGAC+TGG + chr1_3:30759028-30759047 None:intergenic 50.0%
CTTGACCCTATAAGGAGGAC+TGG + chr1_3:30759028-30759047 None:intergenic 50.0%
TTCACCCGTGTCACAAGTAG+TGG - chr1_3:30759298-30759317 Msa0114250:intron 50.0%
TCACCCGTGTCACAAGTAGT+GGG - chr1_3:30759299-30759318 Msa0114250:intron 50.0%
AGCTCCCACTACTTGTGACA+CGG + chr1_3:30759306-30759325 None:intergenic 50.0%
GCTCCCACTATTTGTGACAC+TGG + chr1_3:30759347-30759366 None:intergenic 50.0%
TGGATTTGATGCCCTAACGG+TGG - chr1_3:30759746-30759765 Msa0114250:intron 50.0%
GCATGACAAAAGCCACCGTT+AGG + chr1_3:30759761-30759780 None:intergenic 50.0%
GTGAGCTTAGCTCAAGTGGT+AGG + chr1_3:30759944-30759963 None:intergenic 50.0%
ACCACTTGAGCTAAGCTCAC+GGG - chr1_3:30759944-30759963 Msa0114250:intron 50.0%
! CTTGTCTTTTGGCCCATCCA+AGG + chr1_3:30761105-30761124 None:intergenic 50.0%
CTTGGATGGGCCAAAAGACA+AGG - chr1_3:30761103-30761122 Msa0114250:intron 50.0%
GGAGTTCACCACCTCATAAG+GGG - chr1_3:30761235-30761254 Msa0114250:intron 50.0%
CATTCGGAGAACCCCTTATG+AGG + chr1_3:30761249-30761268 None:intergenic 50.0%
! GTTGTGTAGGCTCGGTCACA+AGG + chr1_3:30758661-30758680 None:intergenic 55.0%
CCGGTTCTATGGGGTTGTGT+AGG + chr1_3:30758674-30758693 None:intergenic 55.0%
TGTTAGCAGCCAACACTCGG+TGG - chr1_3:30758807-30758826 Msa0114250:CDS 55.0%
ACACTCCTCACCGTACAAGC+CGG - chr1_3:30758884-30758903 Msa0114250:CDS 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG + chr1_3:30758892-30758911 None:intergenic 55.0%
GAGGAGGACATGGGAAACCT+GGG + chr1_3:30758977-30758996 None:intergenic 55.0%
ACAGTAGCAGCAAGGAGGAC+TGG + chr1_3:30758999-30759018 None:intergenic 55.0%
CCTATAAGGAGGACTGGAGG+AGG + chr1_3:30759022-30759041 None:intergenic 55.0%
CCTCCTCCAGTCCTCCTTAT+AGG - chr1_3:30759019-30759038 Msa0114250:intron 55.0%
GACCCTATAAGGAGGACTGG+AGG + chr1_3:30759025-30759044 None:intergenic 55.0%
AGTCTCTGATACTTGCGGGC+AGG - chr1_3:30759229-30759248 Msa0114250:intron 55.0%
GTCTCTGATACTTGCGGGCA+GGG - chr1_3:30759230-30759249 Msa0114250:intron 55.0%
ACTTGCGGGCAGGGATACTT+TGG - chr1_3:30759239-30759258 Msa0114250:intron 55.0%
GCTCCCACTACTTGTGACAC+GGG + chr1_3:30759305-30759324 None:intergenic 55.0%
CCACTTGAGCTAAGCTCACG+GGG - chr1_3:30759945-30759964 Msa0114250:intron 55.0%
TCGGAGAACCCCTTATGAGG+TGG + chr1_3:30761246-30761265 None:intergenic 55.0%
GGAGGAGGACATGGGAAACC+TGG + chr1_3:30758978-30758997 None:intergenic 60.0%
GGAGGACTGGAGGAGGACAT+GGG + chr1_3:30758986-30759005 None:intergenic 60.0%
AGGAGGACTGGAGGAGGACA+TGG + chr1_3:30758987-30759006 None:intergenic 60.0%
GTAGCAGCAAGGAGGACTGG+AGG + chr1_3:30758996-30759015 None:intergenic 60.0%
GGAGGACAGTAGCAGCAAGG+AGG + chr1_3:30759004-30759023 None:intergenic 60.0%
GGAGGAGGACAGTAGCAGCA+AGG + chr1_3:30759007-30759026 None:intergenic 60.0%
CCCCGTGAGCTTAGCTCAAG+TGG + chr1_3:30759948-30759967 None:intergenic 60.0%
GCAGCAAGGAGGACTGGAGG+AGG + chr1_3:30758993-30759012 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 30758185 30761564 30758185 ID=Msa0114250;Name=Msa0114250
chr1_3 mRNA 30758185 30761564 30758185 ID=Msa0114250-mRNA-1;Parent=Msa0114250;Name=Msa0114250-mRNA-1;_AED=0.32;_eAED=0.32;_QI=112|1|1|1|1|1|4|186|300
chr1_3 exon 30758185 30758676 30758185 ID=Msa0114250-mRNA-1:exon:10187;Parent=Msa0114250-mRNA-1
chr1_3 exon 30758796 30758993 30758796 ID=Msa0114250-mRNA-1:exon:10186;Parent=Msa0114250-mRNA-1
chr1_3 exon 30759408 30759625 30759408 ID=Msa0114250-mRNA-1:exon:10185;Parent=Msa0114250-mRNA-1
chr1_3 exon 30761272 30761564 30761272 ID=Msa0114250-mRNA-1:exon:10184;Parent=Msa0114250-mRNA-1
chr1_3 five_prime_UTR 30761453 30761564 30761453 ID=Msa0114250-mRNA-1:five_prime_utr;Parent=Msa0114250-mRNA-1
chr1_3 CDS 30761272 30761452 30761272 ID=Msa0114250-mRNA-1:cds;Parent=Msa0114250-mRNA-1
chr1_3 CDS 30759408 30759625 30759408 ID=Msa0114250-mRNA-1:cds;Parent=Msa0114250-mRNA-1
chr1_3 CDS 30758796 30758993 30758796 ID=Msa0114250-mRNA-1:cds;Parent=Msa0114250-mRNA-1
chr1_3 CDS 30758371 30758676 30758371 ID=Msa0114250-mRNA-1:cds;Parent=Msa0114250-mRNA-1
chr1_3 three_prime_UTR 30758185 30758370 30758185 ID=Msa0114250-mRNA-1:three_prime_utr;Parent=Msa0114250-mRNA-1
Gene Sequence

>Msa0114250

ATGGAAACTATGGGGTCTGAAAGTTGTTGTGCAAGAACTGTTCATGATATTGTTCCTTCGTTCAGCTCCAAATGGTTGAGGAAGAAGAATCCACGTGTTGGACTGTTCTTGTGTTCTTTCAGAGTTAGAGCTTGTCAATCCATTGCTAACAACAATAATAAGGATATCTACAAACAAGTGGGTTTATTTTCCCTAAGAAGGAAAATCGAAGACACAGTTATACGCGCTGAGTTGTATGCATCAACAGCTTTGGAAATGGAAGAAGCAAGTTGGATTAAGCAGGAAGAAATGGTACGTGATTCAGATCTGTGGGATGACCCAACTAAGTCCAACGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGTAGTTGATTCTCTAAAGGACTTGAGATACAAGGTAGAGGAAGCACAGCTGATCAAGCAGTTAGCTGAGATGAATGTTATTGATTACGGGCTCTATAAACAAGCATATGATGCATCAATAGACGTGAGCAACATACTGGATCAGTATGAGATATCCAAGCTTCTTAAAGGGCCATTTGATATGGCAGGAGCATGTTTGGTTATAAAAGCCACTACCGGCATCTTTTCAAAGCTCTGGGCAGAACAGCTCCTACAAATGTACCTTGGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAGGTGTTTGATCGAGAATGGAGGAATCAATTTAGCAACTATAGAGTTTGAATTTGAATGTGCTTATGGCTATCTTTTGGGGGAAAAAGGAGTTCACCACCTCATAAGGGGTTCTCCGAATGAATCTTCTCAGCTTGAGGTGCAAAGAGTTCCTTTCGTACTACCTAATTGTAAAACTGATTTTTCGTTCTTGTTCAATTGTGTTATTTTCACATTGAATTTTATCCTCTGA

Protein sequence

>Msa0114250

METMGSESCCARTVHDIVPSFSSKWLRKKNPRVGLFLCSFRVRACQSIANNNNKDIYKQVGLFSLRRKIEDTVIRAELYASTALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAQLIKQLAEMNVIDYGLYKQAYDASIDVSNILDQYEISKLLKGPFDMAGACLVIKATTGIFSKLWAEQLLQMYLGWAKRQGYEGRIVDRCLIENGGINLATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLEVQRVPFVLPNCKTDFSFLFNCVIFTLNFIL*