AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0853520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853520 MtrunA17_Chr5g0430081 95.076 264 13 0 4 267 3 266 1.37e-175 494
Msa0853520 MtrunA17_Chr5g0430101 80.153 262 52 0 1 262 1 262 6.80e-153 436
Msa0853520 MtrunA17_Chr5g0430111 77.358 265 60 0 3 267 4 268 2.82e-150 426
Msa0853520 MtrunA17_Chr5g0430031 76.119 268 63 1 1 267 1 268 9.08e-149 426
Msa0853520 MtrunA17_Chr5g0430091 79.848 263 53 0 5 267 6 268 1.10e-143 413
Msa0853520 MtrunA17_Chr5g0430131 77.567 263 59 0 3 265 4 266 1.98e-138 399
Msa0853520 MtrunA17_Chr5g0430171 76.549 226 53 0 3 228 4 229 1.68e-117 336
Msa0853520 MtrunA17_Chr8g0390881 60.474 253 98 1 11 261 9 261 4.49e-106 317
Msa0853520 MtrunA17_Chr6g0484841 57.500 240 102 0 23 262 24 263 8.67e-97 293
Msa0853520 MtrunA17_Chr6g0484811 54.444 270 122 1 1 269 1 270 6.25e-96 291
Msa0853520 MtrunA17_Chr2g0310391 45.802 262 133 3 6 262 1 258 6.74e-69 221
Msa0853520 MtrunA17_Chr2g0310381 44.656 262 134 4 6 262 3 258 2.46e-65 211
Msa0853520 MtrunA17_Chr8g0382901 47.012 251 125 3 17 262 473 720 1.18e-63 214
Msa0853520 MtrunA17_Chr8g0382901 46.930 228 108 3 35 262 27 241 5.28e-57 196
Msa0853520 MtrunA17_Chr5g0430051 82.759 116 18 1 1 114 1 116 8.39e-61 188
Msa0853520 MtrunA17_Chr4g0058231 39.370 254 145 5 6 255 2 250 6.81e-57 189
Msa0853520 MtrunA17_Chr3g0101751 38.007 271 157 5 7 270 10 276 3.54e-55 185
Msa0853520 MtrunA17_Chr3g0101711 41.107 253 141 4 11 259 12 260 4.77e-55 185
Msa0853520 MtrunA17_Chr4g0058201 43.049 223 122 3 37 255 29 250 6.21e-55 184
Msa0853520 MtrunA17_Chr4g0058191 38.202 267 152 7 6 267 2 260 6.85e-54 181
Msa0853520 MtrunA17_Chr3g0101691 39.147 258 138 5 16 258 7 260 8.37e-54 181
Msa0853520 MtrunA17_Chr3g0116681 36.680 259 147 6 13 261 18 269 2.70e-53 180
Msa0853520 MtrunA17_Chr7g0258221 34.783 253 159 2 11 257 7 259 4.44e-53 180
Msa0853520 MtrunA17_Chr3g0101601 41.509 265 142 6 9 265 3 262 5.41e-53 179
Msa0853520 MtrunA17_Chr3g0101571 37.698 252 154 2 7 257 7 256 2.52e-52 177
Msa0853520 MtrunA17_Chr3g0101831 38.911 257 144 5 11 258 7 259 3.22e-52 177
Msa0853520 MtrunA17_Chr3g0101761 36.531 271 161 5 7 270 3 269 6.93e-52 176
Msa0853520 MtrunA17_Chr5g0403321 39.419 241 136 4 22 257 23 258 1.00e-51 176
Msa0853520 MtrunA17_Chr3g0101611 38.961 231 138 2 33 262 35 263 1.23e-51 176
Msa0853520 MtrunA17_Chr3g0101651 40.889 225 125 4 37 257 39 259 2.33e-51 175
Msa0853520 MtrunA17_Chr3g0101631 38.258 264 156 4 8 269 11 269 3.23e-51 174
Msa0853520 MtrunA17_Chr4g0058281 37.736 265 158 4 9 268 21 283 3.28e-51 175
Msa0853520 MtrunA17_Chr3g0101621 41.224 245 139 4 13 255 11 252 4.34e-51 174
Msa0853520 MtrunA17_Chr4g0047631 37.165 261 155 5 8 262 17 274 6.48e-51 174
Msa0853520 MtrunA17_Chr5g0403331 36.187 257 156 4 5 257 6 258 9.77e-51 173
Msa0853520 MtrunA17_Chr5g0430071 76.033 121 29 0 147 267 1 121 9.87e-51 170
Msa0853520 MtrunA17_Chr3g0101821 35.424 271 164 5 7 270 3 269 1.33e-50 173
Msa0853520 MtrunA17_Chr3g0101661 41.126 231 128 4 37 263 39 265 1.41e-50 173
Msa0853520 MtrunA17_Chr6g0484771 58.993 139 56 1 71 209 1 138 2.05e-50 162
Msa0853520 MtrunA17_Chr3g0101581 34.717 265 166 4 7 267 8 269 2.08e-50 172
Msa0853520 MtrunA17_Chr4g0076161 38.931 262 148 7 5 259 6 262 2.19e-50 172
Msa0853520 MtrunA17_Chr1g0174451 34.074 270 169 3 8 268 4 273 4.21e-50 172
Msa0853520 MtrunA17_Chr8g0344151 37.179 234 136 3 37 261 37 268 4.48e-49 169
Msa0853520 MtrunA17_Chr4g0058261 40.586 239 135 4 22 254 48 285 7.53e-49 169
Msa0853520 MtrunA17_Chr1g0174481 35.769 260 160 2 9 261 4 263 7.57e-49 168
Msa0853520 MtrunA17_Chr3g0101721 42.222 225 122 4 37 257 38 258 9.41e-49 168
Msa0853520 MtrunA17_Chr6g0472311 35.659 258 158 4 6 258 14 268 2.59e-48 167
Msa0853520 MtrunA17_Chr3g0101811 36.782 261 152 5 7 258 3 259 3.70e-48 167
Msa0853520 MtrunA17_Chr1g0174461 35.833 240 149 2 34 268 33 272 6.87e-48 166
Msa0853520 MtrunA17_Chr3g0094171 35.409 257 156 3 9 259 16 268 1.06e-47 166
Msa0853520 MtrunA17_Chr3g0101701 38.197 233 132 4 37 263 39 265 1.71e-47 165
Msa0853520 MtrunA17_Chr6g0463611 34.363 259 159 7 11 261 22 277 2.10e-47 160
Msa0853520 MtrunA17_Chr1g0156101 39.024 246 135 4 37 267 33 278 2.16e-47 165
Msa0853520 MtrunA17_Chr6g0463791 38.168 262 153 7 2 258 3 260 2.78e-47 164
Msa0853520 MtrunA17_Chr8g0344181 36.564 227 134 2 37 255 39 263 4.03e-47 164
Msa0853520 MtrunA17_Chr1g0174421 35.019 257 160 3 7 258 20 274 5.44e-47 159
Msa0853520 MtrunA17_Chr3g0101731 35.769 260 155 5 7 258 3 258 6.87e-47 163
Msa0853520 MtrunA17_Chr5g0403351 34.241 257 160 4 5 257 6 257 7.15e-47 163
Msa0853520 MtrunA17_Chr4g0047691 37.052 251 147 5 11 255 25 270 7.81e-47 163
Msa0853520 MtrunA17_Chr4g0047661 35.484 248 156 3 12 255 24 271 1.35e-46 162
Msa0853520 MtrunA17_Chr1g0162801 37.452 259 147 8 6 258 9 258 1.47e-46 162
Msa0853520 MtrunA17_Chr8g0372251 38.636 220 131 3 37 255 36 252 1.61e-46 162
Msa0853520 MtrunA17_Chr5g0445461 35.632 261 156 5 3 258 8 261 2.92e-46 161
Msa0853520 MtrunA17_Chr5g0445751 35.379 277 157 8 1 262 1 270 3.19e-46 157
Msa0853520 MtrunA17_Chr6g0465511 36.078 255 155 4 7 257 5 255 7.12e-46 160
Msa0853520 MtrunA17_Chr3g0101801 33.574 277 161 6 7 270 10 276 1.13e-45 160
Msa0853520 MtrunA17_Chr4g0047641 34.127 252 156 6 11 255 23 271 1.29e-45 160
Msa0853520 MtrunA17_Chr5g0405001 37.946 224 135 3 35 257 43 263 1.52e-45 160
Msa0853520 MtrunA17_Chr8g0357431 37.008 254 149 5 12 258 10 259 2.76e-45 159
Msa0853520 MtrunA17_Chr4g0011861 35.745 235 144 3 28 255 21 255 3.48e-45 154
Msa0853520 MtrunA17_Chr3g0116741 36.604 265 155 7 1 259 22 279 3.61e-45 159
Msa0853520 MtrunA17_Chr6g0466331 36.078 255 155 4 7 257 5 255 7.99e-45 157
Msa0853520 MtrunA17_Chr5g0445531 36.709 237 143 4 25 258 29 261 1.91e-44 157
Msa0853520 MtrunA17_Chr6g0463801 38.174 241 137 5 28 262 29 263 2.03e-44 156
Msa0853520 MtrunA17_Chr5g0431641 35.316 269 161 5 4 264 9 272 2.79e-44 156
Msa0853520 MtrunA17_Chr8g0361471 35.156 256 158 4 7 258 5 256 4.19e-44 155
Msa0853520 MtrunA17_Chr1g0174471 31.939 263 173 2 11 268 26 287 5.94e-44 156
Msa0853520 MtrunA17_Chr1g0156081 37.398 246 139 4 37 267 57 302 8.51e-44 155
Msa0853520 MtrunA17_Chr5g0445441 36.047 258 153 5 3 255 49 299 9.68e-44 155
Msa0853520 MtrunA17_Chr2g0310371 59.322 118 48 0 37 154 29 146 9.94e-44 145
Msa0853520 MtrunA17_Chr8g0357421 37.743 257 143 6 12 258 10 259 1.07e-43 155
Msa0853520 MtrunA17_Chr1g0162811 35.907 259 152 6 9 258 5 258 1.13e-43 154
Msa0853520 MtrunA17_Chr4g0030701 36.638 232 143 2 37 264 36 267 1.22e-43 155
Msa0853520 MtrunA17_Chr2g0280261 35.685 241 147 4 26 262 24 260 1.32e-43 154
Msa0853520 MtrunA17_Chr5g0445451 34.375 256 160 4 3 255 8 258 1.59e-43 154
Msa0853520 MtrunA17_Chr5g0419691 36.596 235 141 4 28 255 21 254 4.10e-43 153
Msa0853520 MtrunA17_Chr3g0084921 34.231 260 160 3 11 263 11 266 4.51e-43 153
Msa0853520 MtrunA17_Chr7g0235551 32.685 257 167 3 8 258 4 260 5.26e-43 153
Msa0853520 MtrunA17_Chr4g0011871 36.596 235 142 3 28 255 21 255 5.68e-43 152
Msa0853520 MtrunA17_Chr1g0167321 34.848 264 161 6 1 260 1 257 3.27e-42 150
Msa0853520 MtrunA17_Chr4g0035921 34.137 249 151 5 11 255 15 254 3.70e-42 150
Msa0853520 MtrunA17_Chr4g0011881 33.871 248 153 5 15 255 12 255 3.83e-42 150
Msa0853520 MtrunA17_Chr3g0101671 35.547 256 153 6 11 258 9 260 4.26e-42 150
Msa0853520 MtrunA17_Chr3g0094231 35.714 224 138 2 37 255 37 259 1.03e-41 149
Msa0853520 MtrunA17_Chr1g0174441 32.117 274 179 3 1 268 20 292 1.17e-41 150
Msa0853520 MtrunA17_Chr1g0200961 33.962 265 163 4 9 268 6 263 1.30e-41 149
Msa0853520 MtrunA17_Chr3g0086691 36.330 267 157 2 1 258 1 263 3.05e-41 148
Msa0853520 MtrunA17_Chr4g0024771 33.203 256 165 4 9 260 10 263 6.37e-41 147
Msa0853520 MtrunA17_Chr5g0402971 31.890 254 159 4 28 267 31 284 1.50e-40 142
Msa0853520 MtrunA17_Chr4g0020041 34.884 258 153 6 7 258 10 258 2.20e-40 146
Msa0853520 MtrunA17_Chr5g0445381 35.556 270 158 6 5 264 40 303 2.87e-40 146
Msa0853520 MtrunA17_Chr8g0344191 30.233 258 169 3 7 255 39 294 3.18e-40 146
Msa0853520 MtrunA17_Chr5g0431671 34.016 244 150 4 30 264 32 273 1.51e-39 143
Msa0853520 MtrunA17_Chr7g0218601 32.482 274 161 6 20 270 15 287 3.62e-39 142
Msa0853520 MtrunA17_Chr4g0030711 35.776 232 145 2 43 270 44 275 5.23e-39 142
Msa0853520 MtrunA17_Chr4g0030741 35.769 260 155 5 1 257 30 280 8.19e-39 139
Msa0853520 MtrunA17_Chr8g0355961 35.498 231 142 3 12 235 14 244 9.58e-39 141
Msa0853520 MtrunA17_Chr5g0406651 36.508 252 148 5 24 264 18 268 1.17e-38 141
Msa0853520 MtrunA17_Chr5g0445421 32.812 256 145 4 3 256 82 312 1.23e-38 142
Msa0853520 MtrunA17_Chr5g0446161 32.906 234 145 5 26 253 31 258 1.39e-38 141
Msa0853520 MtrunA17_Chr3g0086651 33.209 268 166 2 1 259 1 264 5.44e-38 139
Msa0853520 MtrunA17_Chr3g0086661 33.712 264 165 2 5 259 2 264 5.78e-38 139
Msa0853520 MtrunA17_Chr8g0356001 34.746 236 145 4 9 235 9 244 6.40e-38 139
Msa0853520 MtrunA17_Chr5g0446151 35.000 240 142 6 20 253 27 258 1.03e-37 139
Msa0853520 MtrunA17_Chr5g0445411 40.741 162 92 2 4 163 15 174 1.03e-37 131
Msa0853520 MtrunA17_Chr5g0431501 37.445 227 133 4 37 255 34 259 4.41e-37 137
Msa0853520 MtrunA17_Chr5g0431461 37.445 227 133 4 37 255 34 259 4.41e-37 137
Msa0853520 MtrunA17_Chr8g0362701 32.685 257 165 2 7 257 8 262 8.87e-37 136
Msa0853520 MtrunA17_Chr1g0160851 31.481 270 174 5 3 265 5 270 1.08e-36 135
Msa0853520 MtrunA17_Chr4g0011921 34.766 256 150 7 12 255 4 254 2.45e-36 135
Msa0853520 MtrunA17_Chr1g0156061 50.769 130 63 1 37 165 56 185 2.61e-36 134
Msa0853520 MtrunA17_Chr1g0205361 33.755 237 150 3 33 262 31 267 3.77e-36 134
Msa0853520 MtrunA17_Chr7g0254641 32.174 230 148 1 37 258 38 267 5.42e-36 134
Msa0853520 MtrunA17_Chr7g0265611 31.698 265 159 6 15 260 25 286 5.58e-36 134
Msa0853520 MtrunA17_Chr7g0218611 33.597 253 149 4 37 270 34 286 7.70e-36 133
Msa0853520 MtrunA17_Chr1g0207851 34.703 219 138 3 43 257 45 262 7.72e-36 131
Msa0853520 MtrunA17_Chr3g0117321 52.137 117 56 0 38 154 9 125 8.82e-36 124
Msa0853520 MtrunA17_Chr8g0339331 35.593 236 137 6 36 256 38 273 1.24e-35 133
Msa0853520 MtrunA17_Chr5g0395321 31.667 240 153 2 1 236 7 239 1.35e-35 133
Msa0853520 MtrunA17_Chr1g0207841 34.703 219 139 2 43 257 45 263 2.86e-35 132
Msa0853520 MtrunA17_Chr4g0061381 32.000 225 140 2 45 258 40 262 3.27e-35 132
Msa0853520 MtrunA17_Chr4g0046691 33.617 235 134 5 37 258 40 265 4.66e-35 127
Msa0853520 MtrunA17_Chr1g0205371 29.644 253 171 2 10 255 6 258 5.91e-35 131
Msa0853520 MtrunA17_Chr4g0039901 37.168 226 136 3 26 245 24 249 6.22e-35 131
Msa0853520 MtrunA17_Chr7g0224551 32.157 255 159 5 7 257 4 248 1.44e-34 130
Msa0853520 MtrunA17_Chr7g0224561 32.157 255 159 5 7 257 4 248 2.01e-34 130
Msa0853520 MtrunA17_Chr5g0431631 42.857 140 75 2 8 145 25 161 2.70e-34 121
Msa0853520 MtrunA17_Chr3g0101741 38.220 191 111 3 71 258 1 187 6.08e-34 127
Msa0853520 MtrunA17_Chr4g0052851 33.182 220 144 3 37 254 34 252 1.11e-33 127
Msa0853520 MtrunA17_Chr5g0395331 32.189 233 151 2 11 236 12 244 1.20e-33 127
Msa0853520 MtrunA17_Chr8g0339311 34.874 238 140 6 33 255 40 277 1.44e-33 127
Msa0853520 MtrunA17_Chr7g0258211 33.083 266 169 3 9 265 8 273 1.92e-33 127
Msa0853520 MtrunA17_Chr4g0052861 30.651 261 167 5 8 255 3 262 2.29e-33 127
Msa0853520 MtrunA17_Chr4g0011931 34.510 255 152 7 12 255 4 254 3.61e-33 122
Msa0853520 MtrunA17_Chr5g0401681 30.385 260 165 3 7 255 8 262 5.44e-33 125
Msa0853520 MtrunA17_Chr2g0296651 33.333 261 158 4 11 255 2 262 7.21e-33 125
Msa0853520 MtrunA17_Chr4g0011961 33.191 235 148 5 28 255 22 254 8.83e-33 125
Msa0853520 MtrunA17_Chr4g0011901 33.333 240 149 5 23 255 19 254 1.09e-32 125
Msa0853520 MtrunA17_Chr2g0314721 32.895 228 148 2 10 232 17 244 1.20e-32 124
Msa0853520 MtrunA17_Chr4g0046631 30.800 250 158 4 26 260 35 284 1.69e-32 124
Msa0853520 MtrunA17_Chr4g0011981 34.000 250 149 7 28 264 22 268 6.39e-32 122
Msa0853520 MtrunA17_Chr4g0017411 32.618 233 147 5 37 261 31 261 8.76e-32 122
Msa0853520 MtrunA17_Chr4g0057001 31.174 247 157 5 15 254 32 272 1.32e-31 122
Msa0853520 MtrunA17_Chr2g0314731 31.441 229 152 2 9 232 5 233 3.69e-31 120
Msa0853520 MtrunA17_Chr5g0401691 31.102 254 162 6 7 254 29 275 4.64e-31 120
Msa0853520 MtrunA17_Chr6g0458561 31.343 268 167 7 3 255 23 288 4.99e-31 120
Msa0853520 MtrunA17_Chr5g0395381 30.932 236 135 1 1 236 7 214 7.50e-31 119
Msa0853520 MtrunA17_Chr8g0362481 33.508 191 121 1 71 255 1 191 1.83e-30 118
Msa0853520 MtrunA17_Chr6g0451691 27.055 292 186 7 1 269 9 296 2.02e-30 119
Msa0853520 MtrunA17_Chr5g0431511 34.513 226 141 3 37 255 34 259 2.47e-30 118
Msa0853520 MtrunA17_Chr1g0164211 35.426 223 135 3 32 248 25 244 2.86e-30 118
Msa0853520 MtrunA17_Chr1g0176831 29.562 274 186 3 1 270 31 301 7.11e-30 117
Msa0853520 MtrunA17_Chr4g0052881 31.618 272 166 6 8 261 3 272 1.17e-29 116
Msa0853520 MtrunA17_Chr6g0451741 26.207 290 189 6 1 269 29 314 1.66e-28 114
Msa0853520 MtrunA17_Chr4g0046671 29.237 236 153 2 37 258 45 280 1.93e-28 110
Msa0853520 MtrunA17_Chr4g0053621 28.736 261 169 4 12 257 9 267 4.22e-28 112
Msa0853520 MtrunA17_Chr6g0451751 26.667 270 174 4 9 257 14 280 5.51e-28 112
Msa0853520 MtrunA17_Chr7g0255531 26.336 262 169 5 12 258 9 261 6.91e-28 111
Msa0853520 MtrunA17_Chr2g0304871 26.820 261 177 3 21 267 23 283 8.66e-28 111
Msa0853520 MtrunA17_Chr7g0246221 29.412 272 182 4 1 264 1 270 1.31e-27 110
Msa0853520 MtrunA17_Chr6g0466901 29.964 277 172 6 9 265 8 282 1.88e-27 110
Msa0853520 MtrunA17_Chr7g0246131 28.682 258 175 3 4 255 5 259 2.03e-27 110
Msa0853520 MtrunA17_Chr4g0046321 28.571 238 161 6 27 260 24 256 3.69e-27 109
Msa0853520 MtrunA17_Chr3g0082701 27.737 274 176 6 3 257 9 279 4.03e-27 109
Msa0853520 MtrunA17_Chr8g0351801 30.043 233 151 4 46 268 44 274 4.40e-27 109
Msa0853520 MtrunA17_Chr2g0296661 32.035 231 143 3 43 259 39 269 4.62e-27 109
Msa0853520 MtrunA17_Chr4g0046331 27.731 238 163 6 27 260 24 256 1.16e-26 108
Msa0853520 MtrunA17_Chr4g0046351 27.731 238 163 6 27 260 24 256 1.49e-26 108
Msa0853520 MtrunA17_Chr6g0451801 28.000 275 174 5 2 257 10 279 3.74e-26 104
Msa0853520 MtrunA17_Chr6g0451641 28.309 272 172 7 5 258 9 275 8.36e-26 105
Msa0853520 MtrunA17_Chr6g0466941 27.839 273 175 5 3 257 4 272 1.46e-25 105
Msa0853520 MtrunA17_Chr6g0451781 28.992 238 151 3 44 263 82 319 1.57e-25 105
Msa0853520 MtrunA17_Chr1g0197851 29.231 260 174 4 8 257 4 263 1.75e-25 104
Msa0853520 MtrunA17_Chr1g0197891 29.719 249 165 4 17 257 17 263 3.95e-25 103
Msa0853520 MtrunA17_Chr4g0008101 26.978 278 176 7 10 264 15 288 4.12e-25 103
Msa0853520 MtrunA17_Chr1g0197881 29.231 260 173 5 8 257 4 262 5.49e-24 100
Msa0853520 MtrunA17_Chr6g0451681 33.333 162 100 2 4 163 35 190 9.06e-24 100
Msa0853520 MtrunA17_Chr4g0056951 29.508 244 160 3 17 254 29 266 1.96e-23 99.4
Msa0853520 MtrunA17_Chr1g0197871 28.897 263 175 4 10 260 6 268 2.55e-23 98.6
Msa0853520 MtrunA17_Chr5g0445541 42.574 101 56 1 14 112 16 116 1.96e-22 90.1
Msa0853520 MtrunA17_Chr1g0200951 27.500 240 161 6 26 255 51 287 3.65e-22 95.5
Msa0853520 MtrunA17_Chr3g0107561 27.612 268 173 6 11 260 19 283 5.53e-22 93.6
Msa0853520 MtrunA17_Chr4g0039391 30.172 232 150 4 43 263 42 272 1.49e-21 93.6
Msa0853520 MtrunA17_Chr1g0213671 30.317 221 136 7 32 238 30 246 2.29e-21 93.2
Msa0853520 MtrunA17_Chr1g0210091 27.426 237 157 6 15 238 41 275 2.41e-21 93.2
Msa0853520 MtrunA17_Chr7g0246181 31.321 265 166 5 4 258 5 263 1.49e-20 90.9
Msa0853520 MtrunA17_Chr4g0074581 27.972 286 179 8 2 262 16 299 2.32e-20 90.5
Msa0853520 MtrunA17_Chr7g0246121 29.811 265 172 6 6 262 7 265 1.77e-19 87.8
Msa0853520 MtrunA17_Chr5g0413911 37.037 135 81 2 37 167 43 177 1.81e-19 87.8
Msa0853520 MtrunA17_Chr5g0445341 43.529 85 47 1 71 154 1 85 2.03e-19 80.5
Msa0853520 MtrunA17_Chr5g0419451 28.340 247 156 10 21 256 45 281 2.41e-19 87.4
Msa0853520 MtrunA17_Chr5g0432751 26.852 216 146 6 35 240 32 245 3.06e-19 87.0
Msa0853520 MtrunA17_Chr4g0076181 48.052 77 40 0 71 147 1 77 7.43e-19 81.3
Msa0853520 MtrunA17_Chr6g0451761 27.692 260 154 7 16 264 22 258 1.33e-18 83.2
Msa0853520 MtrunA17_Chr3g0105751 26.766 269 179 5 9 260 18 285 1.48e-18 84.3
Msa0853520 MtrunA17_Chr1g0198191 30.675 163 105 5 7 164 18 177 4.15e-18 83.6
Msa0853520 MtrunA17_Chr5g0431601 44.578 83 45 1 71 153 1 82 4.60e-18 77.0
Msa0853520 MtrunA17_Chr7g0246151 28.405 257 175 3 4 254 5 258 7.45e-18 82.8
Msa0853520 MtrunA17_Chr8g0346261 25.862 232 159 6 38 260 86 313 8.62e-18 82.8
Msa0853520 MtrunA17_Chr8g0370651 25.524 286 195 7 3 270 11 296 8.96e-18 82.8
Msa0853520 MtrunA17_Chr8g0370641 26.236 263 176 7 26 270 30 292 1.24e-17 82.4
Msa0853520 MtrunA17_Chr5g0409051 29.902 204 128 7 13 207 5 202 2.45e-17 81.3
Msa0853520 MtrunA17_Chr8g0377341 25.820 244 162 8 27 258 58 294 1.93e-16 79.0
Msa0853520 MtrunA17_Chr2g0314771 27.097 155 109 1 71 221 1 155 2.13e-16 74.7
Msa0853520 MtrunA17_Chr3g0107541 26.180 233 152 6 45 260 59 288 2.10e-14 72.8
Msa0853520 MtrunA17_Chr2g0280071 26.901 171 115 3 1 167 34 198 6.19e-14 71.6
Msa0853520 MtrunA17_Chr2g0280001 31.111 135 89 2 37 167 64 198 1.34e-13 68.2
Msa0853520 MtrunA17_Chr3g0107611 24.908 273 174 8 6 257 26 288 1.46e-13 70.1
Msa0853520 MtrunA17_Chr6g0484781 49.254 67 34 0 1 67 1 67 3.03e-13 63.5
Msa0853520 MtrunA17_Chr2g0310361 36.190 105 61 2 163 262 1 104 3.41e-13 65.5
Msa0853520 MtrunA17_Chr1g0176861 46.237 93 47 2 1 93 5 94 5.67e-13 63.5
Msa0853520 MtrunA17_Chr2g0280051 26.289 194 133 5 37 221 74 266 7.36e-13 67.4
Msa0853520 MtrunA17_Chr6g0458571 38.835 103 58 4 12 111 32 132 1.99e-12 63.2
Msa0853520 MtrunA17_Chr8g0364631 28.272 191 121 6 37 217 33 217 3.68e-12 66.2
Msa0853520 MtrunA17_Chr2g0280041 24.658 219 159 3 45 257 71 289 9.04e-12 65.1
Msa0853520 MtrunA17_Chr2g0280081 29.915 117 81 1 60 175 558 674 6.85e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853520 AT3G48320.1 41.406 256 143 3 1 255 1 250 1.93e-63 207
Msa0853520 AT3G48280.1 36.047 258 161 3 6 262 1 255 9.69e-57 189
Msa0853520 AT3G48310.1 40.991 222 128 2 37 257 33 252 3.56e-56 188
Msa0853520 AT3G48290.1 39.316 234 137 3 24 255 21 251 2.79e-54 182
Msa0853520 AT3G48290.2 39.316 234 137 3 24 255 21 251 3.57e-54 183
Msa0853520 AT2G30770.1 39.035 228 135 2 37 260 34 261 7.05e-53 179
Msa0853520 AT3G48270.1 35.857 251 158 2 6 255 1 249 1.33e-51 176
Msa0853520 AT3G48300.1 39.819 221 130 2 38 257 31 249 7.26e-51 174
Msa0853520 AT3G48300.2 39.819 221 130 2 38 257 33 251 7.54e-51 174
Msa0853520 AT1G11610.1 39.013 223 132 2 37 255 34 256 2.20e-50 172
Msa0853520 AT4G13310.2 37.607 234 140 3 31 258 27 260 3.05e-50 170
Msa0853520 AT1G11610.2 39.013 223 132 2 37 255 34 256 3.27e-50 172
Msa0853520 AT4G13310.1 37.607 234 140 3 31 258 27 260 2.50e-49 170
Msa0853520 AT5G07990.1 35.409 257 160 3 7 258 4 259 5.49e-49 169
Msa0853520 AT5G42590.1 36.260 262 153 5 6 259 4 259 2.77e-48 167
Msa0853520 AT2G30750.1 39.918 243 140 3 22 260 21 261 3.99e-48 167
Msa0853520 AT5G57260.1 36.087 230 139 4 35 257 29 257 1.91e-46 162
Msa0853520 AT5G24950.1 32.819 259 169 3 6 260 3 260 4.55e-46 161
Msa0853520 AT3G26320.1 35.887 248 149 5 19 259 16 260 1.69e-45 160
Msa0853520 AT3G26330.1 35.593 236 140 4 33 259 28 260 3.19e-45 159
Msa0853520 AT4G13290.1 34.874 238 149 3 28 259 25 262 3.21e-45 159
Msa0853520 AT3G26300.1 34.351 262 159 5 4 257 2 258 3.77e-45 159
Msa0853520 AT3G26290.1 35.802 243 144 5 28 261 23 262 5.31e-45 158
Msa0853520 AT5G24960.2 36.404 228 141 3 37 260 34 261 7.19e-45 156
Msa0853520 AT3G26290.2 35.802 243 144 5 28 261 36 275 7.74e-45 158
Msa0853520 AT3G26310.1 36.842 247 141 4 33 264 21 267 9.69e-45 158
Msa0853520 AT5G24960.1 36.245 229 140 3 37 260 34 261 4.12e-44 156
Msa0853520 AT5G25130.1 33.465 254 158 4 7 255 6 253 1.18e-43 155
Msa0853520 AT1G13080.1 40.927 259 141 5 7 255 3 259 6.10e-43 153
Msa0853520 AT3G26180.1 33.852 257 159 3 9 255 3 258 5.07e-42 150
Msa0853520 AT4G20240.2 36.681 229 141 2 31 255 28 256 6.83e-42 148
Msa0853520 AT4G20240.1 36.681 229 141 2 31 255 28 256 2.37e-41 148
Msa0853520 AT1G13110.1 33.852 257 161 3 7 255 3 258 2.52e-41 149
Msa0853520 AT3G26170.1 35.115 262 149 6 9 255 3 258 4.32e-41 148
Msa0853520 AT5G25120.1 32.308 260 165 4 7 261 6 259 4.36e-41 148
Msa0853520 AT5G25140.1 33.203 256 156 4 7 255 6 253 4.90e-40 145
Msa0853520 AT5G06900.1 33.333 228 146 1 37 258 35 262 4.92e-40 145
Msa0853520 AT5G25180.1 33.858 254 152 4 19 261 11 259 6.67e-40 145
Msa0853520 AT3G26280.1 35.827 254 144 5 11 255 16 259 9.02e-40 144
Msa0853520 AT3G26280.2 35.827 254 144 5 11 255 33 276 9.33e-40 145
Msa0853520 AT3G53280.1 35.470 234 145 3 35 262 27 260 2.45e-39 143
Msa0853520 AT3G26190.1 40.625 192 109 2 35 221 27 218 3.24e-39 143
Msa0853520 AT2G24180.1 35.242 227 141 2 37 257 37 263 4.55e-39 142
Msa0853520 AT3G44250.1 40.000 200 110 4 35 225 27 225 7.50e-39 142
Msa0853520 AT2G02580.1 35.472 265 156 6 4 259 2 260 3.95e-38 140
Msa0853520 AT3G26150.1 32.331 266 160 5 5 257 2 260 7.25e-38 139
Msa0853520 AT1G13090.1 44.025 159 89 0 35 193 27 185 8.30e-38 135
Msa0853520 AT4G36220.1 34.272 213 136 3 44 255 48 257 1.17e-37 139
Msa0853520 AT4G20235.1 33.984 256 141 4 6 255 1 234 2.88e-37 134
Msa0853520 AT4G13770.1 33.473 239 151 5 23 254 17 254 3.38e-37 137
Msa0853520 AT3G26200.1 41.667 192 107 2 35 221 27 218 7.70e-37 136
Msa0853520 AT2G45560.2 33.730 252 157 4 11 252 10 261 1.33e-36 132
Msa0853520 AT1G13090.2 44.025 159 89 0 35 193 27 185 3.45e-36 134
Msa0853520 AT3G26270.1 34.052 232 143 3 37 259 33 263 3.93e-36 134
Msa0853520 AT3G26220.1 35.472 265 153 6 11 263 9 267 4.39e-36 134
Msa0853520 AT5G04330.1 33.891 239 142 5 37 263 33 267 1.16e-35 133
Msa0853520 AT4G31500.1 33.473 239 150 6 23 254 17 253 1.53e-35 133
Msa0853520 AT3G26160.1 34.199 231 141 4 37 257 31 260 1.58e-35 133
Msa0853520 AT2G45560.3 34.199 231 142 4 11 231 10 240 2.21e-35 127
Msa0853520 AT2G42250.1 33.071 254 158 4 1 249 5 251 6.05e-35 131
Msa0853520 AT2G45560.1 34.454 238 146 4 11 238 10 247 6.11e-35 131
Msa0853520 AT3G26210.1 45.513 156 85 0 43 198 38 193 1.15e-34 130
Msa0853520 AT3G53300.1 37.500 200 116 3 35 225 27 226 1.25e-34 130
Msa0853520 AT3G20940.1 32.922 243 153 4 23 257 29 269 4.86e-34 129
Msa0853520 AT4G31970.1 31.200 250 152 5 38 267 33 282 3.08e-33 127
Msa0853520 AT5G06905.1 30.859 256 167 3 9 258 6 257 4.52e-33 126
Msa0853520 AT5G57220.1 31.008 258 162 7 6 254 5 255 1.79e-32 124
Msa0853520 AT4G37430.1 31.408 277 167 10 8 264 1 274 2.14e-32 124
Msa0853520 AT4G31940.1 31.950 241 143 4 38 257 33 273 2.39e-32 124
Msa0853520 AT5G67310.1 27.692 260 178 6 6 258 15 271 7.36e-32 123
Msa0853520 AT4G37320.1 31.985 272 154 9 1 254 1 259 8.40e-32 122
Msa0853520 AT4G37410.1 32.692 260 157 9 6 254 5 257 1.12e-31 122
Msa0853520 AT4G15330.1 31.502 273 173 5 2 268 8 272 2.78e-31 121
Msa0853520 AT4G12300.1 30.709 254 163 4 7 254 20 266 2.88e-31 121
Msa0853520 AT4G12320.1 31.250 256 163 4 7 256 20 268 2.99e-31 121
Msa0853520 AT4G15360.1 30.827 266 176 4 9 268 13 276 3.43e-31 121
Msa0853520 AT4G37330.1 32.959 267 155 10 1 254 1 256 8.97e-31 120
Msa0853520 AT3G20950.1 32.075 265 166 7 4 257 11 272 1.42e-30 119
Msa0853520 AT3G20110.1 31.461 267 171 5 10 268 11 273 1.68e-30 119
Msa0853520 AT3G26230.1 30.682 264 172 5 12 267 3 263 3.86e-30 118
Msa0853520 AT3G20140.1 31.984 247 162 3 23 263 29 275 5.18e-30 118
Msa0853520 AT5G44620.1 31.602 231 149 2 45 269 55 282 5.93e-30 118
Msa0853520 AT1G13100.1 41.176 153 87 1 46 198 38 187 7.87e-30 117
Msa0853520 AT5G36220.1 29.825 285 175 9 1 266 1 279 1.67e-29 116
Msa0853520 AT3G26830.1 32.075 265 166 6 11 262 4 267 2.20e-29 116
Msa0853520 AT2G14100.1 32.946 258 166 4 12 262 18 275 6.78e-29 115
Msa0853520 AT4G12330.1 32.579 221 140 2 43 254 53 273 1.06e-28 114
Msa0853520 AT4G37340.1 29.562 274 167 7 12 264 6 274 1.36e-28 114
Msa0853520 AT2G45550.1 31.102 254 158 6 11 253 10 257 1.72e-28 114
Msa0853520 AT1G01280.1 30.667 225 147 1 43 258 39 263 2.56e-28 113
Msa0853520 AT5G10610.1 28.731 268 166 7 1 254 1 257 6.25e-28 112
Msa0853520 AT4G37310.1 30.290 241 155 5 33 260 27 267 8.95e-28 112
Msa0853520 AT1G33720.1 30.709 254 153 6 11 248 10 256 2.71e-27 110
Msa0853520 AT5G10600.1 28.626 262 167 6 5 254 20 273 6.61e-27 109
Msa0853520 AT4G22710.1 30.734 218 144 3 45 255 62 279 7.10e-27 109
Msa0853520 AT3G32047.1 31.081 222 143 4 47 260 53 272 7.72e-27 109
Msa0853520 AT3G25180.2 29.183 257 165 7 13 255 12 265 2.10e-26 107
Msa0853520 AT4G37400.1 28.030 264 174 6 6 260 5 261 2.97e-26 107
Msa0853520 AT4G22690.1 30.275 218 145 3 45 255 93 310 3.01e-26 107
Msa0853520 AT2G23190.1 30.370 270 162 9 11 260 49 312 3.27e-26 107
Msa0853520 AT3G10560.1 32.031 256 150 6 7 251 25 267 5.00e-26 107
Msa0853520 AT3G26180.2 45.946 111 60 0 9 119 3 113 7.10e-26 105
Msa0853520 AT3G25180.1 29.057 265 172 7 2 255 6 265 9.76e-26 106
Msa0853520 AT1G50520.1 31.004 229 150 4 45 265 52 280 1.05e-25 106
Msa0853520 AT2G40890.1 26.360 239 157 4 32 255 23 257 1.60e-25 105
Msa0853520 AT3G20090.2 32.411 253 164 4 12 257 18 270 3.14e-25 104
Msa0853520 AT3G20080.2 30.556 252 166 3 23 268 29 277 3.69e-25 104
Msa0853520 AT3G20080.1 30.556 252 166 3 23 268 29 277 3.69e-25 104
Msa0853520 AT2G25160.2 29.197 274 173 8 1 257 1 270 4.89e-24 100
Msa0853520 AT1G74550.1 30.222 225 141 7 9 225 1 217 6.12e-24 100
Msa0853520 AT3G20130.1 29.148 223 152 3 47 263 53 275 8.90e-24 100
Msa0853520 AT4G37360.1 28.405 257 164 7 11 252 5 256 8.92e-24 100
Msa0853520 AT4G31950.1 28.114 281 165 7 7 267 8 271 9.79e-24 100
Msa0853520 AT2G25160.1 29.197 274 173 8 1 257 1 270 1.03e-23 100
Msa0853520 AT2G45570.1 30.085 236 154 4 43 267 45 280 1.83e-23 99.8
Msa0853520 AT3G52970.2 33.108 148 98 1 37 183 37 184 2.15e-23 99.4
Msa0853520 AT3G52970.1 30.952 210 130 5 37 235 37 242 2.32e-23 99.4
Msa0853520 AT2G05180.1 31.604 212 139 3 47 252 52 263 7.95e-23 97.4
Msa0853520 AT2G27000.1 31.628 215 138 4 50 257 54 266 1.68e-22 97.1
Msa0853520 AT4G15350.1 31.200 250 159 4 10 252 14 257 1.94e-22 96.7
Msa0853520 AT5G09970.1 30.159 252 158 11 29 268 62 307 2.18e-22 96.7
Msa0853520 AT5G42580.1 28.090 267 168 3 7 265 12 262 2.95e-22 96.3
Msa0853520 AT4G37370.1 28.889 270 169 8 2 258 3 262 3.10e-22 95.9
Msa0853520 AT4G12310.1 29.204 226 154 2 43 262 51 276 8.08e-22 95.1
Msa0853520 AT3G20120.4 29.694 229 151 4 47 269 52 276 8.33e-22 94.7
Msa0853520 AT3G61040.2 28.879 232 159 2 35 260 32 263 9.25e-22 94.0
Msa0853520 AT3G20100.1 29.119 261 176 4 9 260 11 271 1.02e-21 94.7
Msa0853520 AT2G46660.1 27.106 273 175 10 3 259 31 295 1.06e-21 94.7
Msa0853520 AT3G61040.1 28.879 232 159 2 35 260 32 263 2.95e-21 93.2
Msa0853520 AT2G23220.1 32.174 230 142 6 37 254 47 274 2.96e-21 93.2
Msa0853520 AT1G50560.1 31.304 230 145 5 47 265 54 281 3.22e-21 93.2
Msa0853520 AT3G61880.1 26.506 249 164 8 22 259 55 295 1.80e-20 90.9
Msa0853520 AT3G61880.2 26.506 249 164 8 22 259 55 295 2.03e-20 90.9
Msa0853520 AT5G47990.1 30.078 256 172 4 9 257 14 269 3.03e-20 90.5
Msa0853520 AT5G35715.1 33.939 165 98 3 71 225 1 164 9.29e-20 88.6
Msa0853520 AT1G13710.1 28.270 237 137 10 38 256 55 276 1.75e-19 88.2
Msa0853520 AT5G04630.1 28.879 232 145 6 8 228 14 236 1.93e-19 87.8
Msa0853520 AT2G45580.3 29.592 196 132 2 43 232 45 240 4.12e-19 86.7
Msa0853520 AT2G45580.1 29.592 196 132 2 43 232 45 240 8.82e-19 86.3
Msa0853520 AT1G74540.1 27.391 230 147 6 6 225 3 222 9.45e-19 85.9
Msa0853520 AT4G15330.2 28.205 273 154 6 2 268 8 244 9.63e-19 85.9
Msa0853520 AT1G58260.1 28.986 207 130 5 2 199 8 206 1.44e-18 85.5
Msa0853520 AT1G74110.1 26.071 280 170 9 4 257 26 294 3.59e-18 84.3
Msa0853520 AT3G20960.2 27.723 202 141 2 61 257 67 268 4.04e-18 84.3
Msa0853520 AT3G53305.1 33.333 135 89 1 71 205 1 134 5.13e-18 82.8
Msa0853520 AT1G11600.1 32.051 156 101 4 1 152 1 155 9.08e-17 80.1
Msa0853520 AT1G79370.1 25.448 279 166 7 7 254 12 279 9.50e-17 80.1
Msa0853520 AT3G03470.1 30.653 199 122 5 1 192 1 190 1.39e-16 79.7
Msa0853520 AT1G16400.1 26.316 247 160 7 7 232 13 258 3.67e-16 78.6
Msa0853520 AT3G28740.1 30.000 230 147 5 37 254 40 267 9.75e-16 77.0
Msa0853520 AT2G22330.1 24.176 273 188 5 1 254 19 291 3.33e-15 75.5
Msa0853520 AT2G22330.2 24.176 273 188 5 1 254 42 314 3.53e-15 75.5
Msa0853520 AT1G28430.1 31.579 190 126 2 8 193 9 198 7.06e-15 74.7
Msa0853520 AT3G53290.1 29.050 179 117 4 86 255 8 185 7.22e-15 74.3
Msa0853520 AT4G15380.1 26.214 206 150 2 61 265 68 272 9.84e-15 74.3
Msa0853520 AT1G16410.2 26.047 215 139 5 37 232 46 259 3.02e-14 72.4
Msa0853520 AT1G16410.1 26.047 215 139 5 37 232 46 259 6.80e-14 71.6
Msa0853520 AT1G01190.1 19.649 285 192 9 3 259 26 301 1.92e-13 70.5
Msa0853520 AT1G01190.2 19.649 285 192 9 3 259 31 306 2.02e-13 70.1
Msa0853520 AT3G10570.1 27.650 217 150 5 53 263 63 278 2.22e-13 70.1
Msa0853520 AT5G05260.1 25.498 251 158 6 11 232 7 257 5.13e-13 68.9
Msa0853520 AT5G05260.2 25.498 251 158 6 11 232 7 257 5.83e-13 68.9
Msa0853520 AT4G39950.1 23.985 271 187 6 2 254 20 289 8.39e-13 68.6
Msa0853520 AT4G39950.2 23.985 271 187 6 2 254 60 329 9.87e-13 68.2
Msa0853520 AT5G04660.1 25.490 204 147 4 61 260 69 271 2.32e-12 67.0
Msa0853520 AT3G20130.2 24.664 223 134 4 47 263 53 247 4.57e-11 63.2
Msa0853520 AT2G27010.1 28.462 260 153 8 17 268 18 252 7.83e-11 62.4

Find 52 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGAATATGGTCCTTAT+TGG 0.251028 5_4:+45347578 Msa0853520:CDS
CCACCAACACTACCAATAAT+TGG 0.262933 5_4:+45347334 Msa0853520:CDS
CCAAGTTGTAAGGACATAAT+TGG 0.268535 5_4:-45347421 None:intergenic
GTAAGAAGAATTTGAATAAA+AGG 0.278800 5_4:-45347270 None:intergenic
GAAGAAGGAGTTGGATGTTT+TGG 0.283479 5_4:+45347672 Msa0853520:CDS
ATCCGGCTGATTATGTTTCT+TGG 0.293757 5_4:+45347866 Msa0853520:CDS
AGGTGAAGGTTTCCAATTAT+TGG 0.299477 5_4:-45347346 None:intergenic
TACCTCATCAAGTGCTTTAC+CGG 0.312775 5_4:-45351045 None:intergenic
GAAGATGAAATAACAATTGT+TGG 0.315561 5_4:-45347451 None:intergenic
TATTGTGTATAAGATGATAT+TGG 0.333101 5_4:+45347771 Msa0853520:CDS
TTGAGATGTTTGGTCCTATT+AGG 0.337546 5_4:+45347650 Msa0853520:CDS
TCTTCGGCCGACTTGCAAAA+TGG 0.341333 5_4:-45347510 None:intergenic
TTCTTTACACTACGCCAATA+AGG 0.348410 5_4:-45347592 None:intergenic
AGCTGAGATGCTTGAGTCTT+CGG 0.369148 5_4:-45347526 None:intergenic
CCAATTATTGGTAGTGTTGG+TGG 0.376931 5_4:-45347334 None:intergenic
TCCAACTCCTTCTTCCTAAT+AGG 0.390766 5_4:-45347664 None:intergenic
GCTGATTATGTTTCTTGGCT+AGG 0.395850 5_4:+45347871 Msa0853520:CDS
GTCATTGGAGAAAGTTGCTT+TGG 0.409403 5_4:+45347699 Msa0853520:CDS
GCTTCAAAAGTTGAGATGTT+TGG 0.415220 5_4:+45347640 Msa0853520:CDS
ATTGTGTATAAGATGATATT+GGG 0.423232 5_4:+45347772 Msa0853520:CDS
TGTAGACAAAGTTCGTCATC+AGG 0.429411 5_4:+45351106 Msa0853520:CDS
GCAATTTGATTTGAAGAAGT+TGG 0.436295 5_4:+45347810 Msa0853520:CDS
TGGAACTTGGCCAAGTTGTA+AGG 0.439993 5_4:-45347431 None:intergenic
CCACATACCTGAAGATCAAA+AGG 0.443680 5_4:-45347895 None:intergenic
AAATAACAATTGTTGGAACT+TGG 0.449231 5_4:-45347444 None:intergenic
ATTGGAAACCTTCACCTACT+AGG 0.455841 5_4:+45347352 Msa0853520:CDS
TAAAGCACTTGATGAGGTAT+TGG 0.465167 5_4:+45351049 Msa0853520:CDS
CCAATTATGTCCTTACAACT+TGG 0.466438 5_4:+45347421 Msa0853520:CDS
TTTCCAATTATTGGTAGTGT+TGG 0.478817 5_4:-45347337 None:intergenic
TATGTGGAAGTTTGCCTAGT+AGG 0.486705 5_4:-45347366 None:intergenic
TTGAAGAAGTTGGTTCAAGA+AGG 0.489675 5_4:+45347820 Msa0853520:CDS
GTTTGGTCCTATTAGGAAGA+AGG 0.490956 5_4:+45347657 Msa0853520:CDS
ACACGAACCTGCAAGAAAAC+CGG 0.496164 5_4:+45351026 Msa0853520:CDS
ATTGGTAGTGTTGGTGGACC+TGG 0.497551 5_4:-45347328 None:intergenic
CAAGAAGGAATGGCTATGCT+TGG 0.502962 5_4:+45347835 Msa0853520:CDS
TGTATAAGATGATATTGGGT+AGG 0.511451 5_4:+45347776 Msa0853520:CDS
GGTATGTGAAAGTGAAGAGA+AGG 0.525580 5_4:-45347249 None:intergenic
TCCTATTAGGAAGAAGGAGT+TGG 0.526720 5_4:+45347663 Msa0853520:CDS
TTGGAGAAAGTTGCTTTGGT+AGG 0.529401 5_4:+45347703 Msa0853520:CDS
GAAAGTTGCTTTGGTAGGTG+AGG 0.532668 5_4:+45347708 Msa0853520:CDS
GTATAAGATGATATTGGGTA+GGG 0.536852 5_4:+45347777 Msa0853520:CDS
GAAGTTGGTTCAAGAAGGAA+TGG 0.545886 5_4:+45347825 Msa0853520:CDS
GAAGTTTGCCTAGTAGGTGA+AGG 0.555123 5_4:-45347360 None:intergenic
AGCCAAGAAACATAATCAGC+CGG 0.559332 5_4:-45347868 None:intergenic
GATTGTAGAGAATCTTATAG+AGG 0.575760 5_4:+45347747 Msa0853520:CDS
GGCCTCTGAATTATCGGAGA+CGG 0.580649 5_4:-45351130 None:intergenic
CACATACCTGAAGATCAAAA+GGG 0.590120 5_4:-45347894 None:intergenic
GTAGACAAAGTTCGTCATCA+GGG 0.597039 5_4:+45351107 Msa0853520:CDS
AGTGATTGAAGTGTTCTATG+TGG 0.604927 5_4:-45347382 None:intergenic
TATAAGATGATATTGGGTAG+GGG 0.617140 5_4:+45347778 Msa0853520:CDS
AACCGGTAAAGCACTTGATG+AGG 0.618427 5_4:+45351043 Msa0853520:CDS
GGTAGTGTTGGTGGACCTGG+TGG 0.649633 5_4:-45347325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAAATTTTTTTAATAAGT+AGG + chr5_4:45348293-45348312 Msa0853520:intron 10.0%
!! TTGAAAAAAATAATCAATTA+GGG - chr5_4:45348453-45348472 None:intergenic 10.0%
!! AAAAATAAAATCAAGTCAAT+AGG - chr5_4:45347944-45347963 None:intergenic 15.0%
!! CATAATATTAAGAAATAAGA+GGG - chr5_4:45348087-45348106 None:intergenic 15.0%
!! TCATAATATTAAGAAATAAG+AGG - chr5_4:45348088-45348107 None:intergenic 15.0%
!! AGTACTAAAATATTGAAATT+TGG - chr5_4:45348196-45348215 None:intergenic 15.0%
!!! TATGTTTATATTGCTTTAAA+CGG + chr5_4:45348385-45348404 Msa0853520:intron 15.0%
!! GTTGAAAAAAATAATCAATT+AGG - chr5_4:45348454-45348473 None:intergenic 15.0%
!! ACAATAATACTATATAAGTA+AGG + chr5_4:45348766-45348785 Msa0853520:intron 15.0%
!! AAAAGCTAAAATTGTTATAT+CGG + chr5_4:45349405-45349424 Msa0853520:intron 15.0%
!!! AATGATTCTTTTTTTTTTGT+TGG - chr5_4:45349451-45349470 None:intergenic 15.0%
!!! ATAAATTGATTTTCGAAATT+GGG - chr5_4:45350570-45350589 None:intergenic 15.0%
!! AAAGAGATATAAGTAATAAA+AGG + chr5_4:45350662-45350681 Msa0853520:intron 15.0%
!! GTAAGAAGAATTTGAATAAA+AGG - chr5_4:45347273-45347292 None:intergenic 20.0%
!! TATTGTGTATAAGATGATAT+TGG + chr5_4:45347771-45347790 Msa0853520:CDS 20.0%
!! ATTGTGTATAAGATGATATT+GGG + chr5_4:45347772-45347791 Msa0853520:CDS 20.0%
!!! ACTTTATTATTGCATAGTTT+TGG + chr5_4:45348004-45348023 Msa0853520:intron 20.0%
!!! CTTTATTATTGCATAGTTTT+GGG + chr5_4:45348005-45348024 Msa0853520:intron 20.0%
!!! TTCAATATTTTAGTACTACA+AGG + chr5_4:45348199-45348218 Msa0853520:intron 20.0%
!!! TCAATATTTTAGTACTACAA+GGG + chr5_4:45348200-45348219 Msa0853520:intron 20.0%
!!! AAATATTTTTCCATTTCTAG+TGG + chr5_4:45348419-45348438 Msa0853520:intron 20.0%
!! AACTATGTATATTTGATTGT+TGG - chr5_4:45348970-45348989 None:intergenic 20.0%
!!! AACTTTTAGTTTCAAGTTAT+CGG - chr5_4:45349000-45349019 None:intergenic 20.0%
!!! CTTTTTATTGTCCAATTTTA+AGG + chr5_4:45349145-45349164 Msa0853520:intron 20.0%
!! TTGATTTCATTCCTTAAAAT+TGG - chr5_4:45349159-45349178 None:intergenic 20.0%
!!! TAATATCCGTTAATTTTCTT+TGG - chr5_4:45349299-45349318 None:intergenic 20.0%
!!! AAAATTAACGGATATTATGA+TGG + chr5_4:45349302-45349321 Msa0853520:intron 20.0%
!! ACATAATTCAGTGTAATTAT+AGG - chr5_4:45349631-45349650 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG + chr5_4:45349650-45349669 Msa0853520:intron 20.0%
!! TAGTCATTGATGTTAAAATT+AGG + chr5_4:45349787-45349806 Msa0853520:intron 20.0%
!! TTGAATTTGATTAGAACATT+GGG - chr5_4:45349942-45349961 None:intergenic 20.0%
!!! GTTATTTTGTGAAATTCTAT+TGG + chr5_4:45350479-45350498 Msa0853520:intron 20.0%
!! ATAACATTACATATTCCAAT+TGG - chr5_4:45350513-45350532 None:intergenic 20.0%
!!! GATAAATTGATTTTCGAAAT+TGG - chr5_4:45350571-45350590 None:intergenic 20.0%
!! AATGAATGACAATTACTAAT+TGG - chr5_4:45350986-45351005 None:intergenic 20.0%
!!! CATAATTGGACCATATTTTT+TGG - chr5_4:45347410-45347429 None:intergenic 25.0%
! AAATAACAATTGTTGGAACT+TGG - chr5_4:45347447-45347466 None:intergenic 25.0%
! GAAGATGAAATAACAATTGT+TGG - chr5_4:45347454-45347473 None:intergenic 25.0%
!!! TCATTTTTTATGGTTCCAAA+GGG + chr5_4:45347548-45347567 Msa0853520:CDS 25.0%
!!! TTTTTTCCTCGTGTATTAAT+GGG + chr5_4:45348037-45348056 Msa0853520:intron 25.0%
! AGAAAATAGGGAAAAATAAG+AGG + chr5_4:45348223-45348242 Msa0853520:intron 25.0%
!!! TTTTTTAATAAGTAGGGTCA+AGG + chr5_4:45348300-45348319 Msa0853520:intron 25.0%
! GTTCTTAGAACACTATTATT+AGG + chr5_4:45348691-45348710 Msa0853520:intron 25.0%
!! AAAAGTACAATAACCAAACA+CGG - chr5_4:45348886-45348905 None:intergenic 25.0%
! ACTTGACTAATATCAAAGAA+CGG + chr5_4:45349182-45349201 Msa0853520:intron 25.0%
!! ATTCTTTTATTGTTAGTGTG+AGG + chr5_4:45349244-45349263 Msa0853520:intron 25.0%
!! TTTGTATTTTATCTGAGTCA+AGG - chr5_4:45349736-45349755 None:intergenic 25.0%
! TTTAACATCAATGACTAAAC+TGG - chr5_4:45349784-45349803 None:intergenic 25.0%
!!! TTAGGTTTTAAATGTTGACA+AGG + chr5_4:45349805-45349824 Msa0853520:intron 25.0%
!! CCAATTGTTTACTTTCATTT+TGG - chr5_4:45349853-45349872 None:intergenic 25.0%
! CCAAAATGAAAGTAAACAAT+TGG + chr5_4:45349850-45349869 Msa0853520:intron 25.0%
! ACTAAACTCATTACGTATTT+GGG - chr5_4:45349886-45349905 None:intergenic 25.0%
!!! ATTGGGTTTTAGATCTATTA+TGG - chr5_4:45349925-45349944 None:intergenic 25.0%
! GTTGAATTTGATTAGAACAT+TGG - chr5_4:45349943-45349962 None:intergenic 25.0%
!! ATTTTCGAAATTGGGAATAA+AGG - chr5_4:45350562-45350581 None:intergenic 25.0%
! AAAATTATGAGTGAGAATCT+GGG + chr5_4:45350601-45350620 Msa0853520:intron 25.0%
!!! TGGATATTTTTGCATAACTT+AGG - chr5_4:45350966-45350985 None:intergenic 25.0%
! ATTCATTTAACTCTTTGCTA+GGG + chr5_4:45350999-45351018 Msa0853520:intron 25.0%
! TGGTGGCTTTTTATGATTTA+TGG - chr5_4:45347311-45347330 None:intergenic 30.0%
ATAAATCATAAAAAGCCACC+AGG + chr5_4:45347310-45347329 Msa0853520:CDS 30.0%
!! TTTCCAATTATTGGTAGTGT+TGG - chr5_4:45347340-45347359 None:intergenic 30.0%
CAATCACTCTCCAAAAAATA+TGG + chr5_4:45347397-45347416 Msa0853520:CDS 30.0%
!!! CTCATTTTTTATGGTTCCAA+AGG + chr5_4:45347547-45347566 Msa0853520:CDS 30.0%
TTTCTGAATATGGTCCTTAT+TGG + chr5_4:45347578-45347597 Msa0853520:CDS 30.0%
GATTGTAGAGAATCTTATAG+AGG + chr5_4:45347747-45347766 Msa0853520:CDS 30.0%
TGTATAAGATGATATTGGGT+AGG + chr5_4:45347776-45347795 Msa0853520:CDS 30.0%
GTATAAGATGATATTGGGTA+GGG + chr5_4:45347777-45347796 Msa0853520:CDS 30.0%
TATAAGATGATATTGGGTAG+GGG + chr5_4:45347778-45347797 Msa0853520:CDS 30.0%
!! GCAATTTGATTTGAAGAAGT+TGG + chr5_4:45347810-45347829 Msa0853520:CDS 30.0%
! CGTATCTGTACATTTTTCAT+TGG + chr5_4:45347979-45347998 Msa0853520:intron 30.0%
!!! GTTTTTTCCTCGTGTATTAA+TGG + chr5_4:45348036-45348055 Msa0853520:intron 30.0%
! TTTTTCCTCGTGTATTAATG+GGG + chr5_4:45348038-45348057 Msa0853520:intron 30.0%
GAAAATTGAGATTAAACCAG+GGG - chr5_4:45348065-45348084 None:intergenic 30.0%
GGAAAATTGAGATTAAACCA+GGG - chr5_4:45348066-45348085 None:intergenic 30.0%
ACTGTCAACAATTGAAAAGA+GGG + chr5_4:45348159-45348178 Msa0853520:intron 30.0%
TTGAACAAGACAAAAACACT+AGG + chr5_4:45348254-45348273 Msa0853520:intron 30.0%
TGAACAAGACAAAAACACTA+GGG + chr5_4:45348255-45348274 Msa0853520:intron 30.0%
!!! TATTTTTCCATTTCTAGTGG+AGG + chr5_4:45348422-45348441 Msa0853520:intron 30.0%
!! ACAATATGCTCTAAGAGAAT+TGG + chr5_4:45348556-45348575 Msa0853520:intron 30.0%
CTAAGGCTAAAATCGATAAA+TGG - chr5_4:45349044-45349063 None:intergenic 30.0%
AGAAATCAATCTGCTTACTA+AGG - chr5_4:45349061-45349080 None:intergenic 30.0%
AGAACGGATATTATCAAAGA+AGG + chr5_4:45349198-45349217 Msa0853520:intron 30.0%
TGTGAGCCAAAGAAAATTAA+CGG + chr5_4:45349290-45349309 Msa0853520:intron 30.0%
TTCAGTGTAATTATAGGTGT+CGG - chr5_4:45349625-45349644 None:intergenic 30.0%
CTAAACTCATTACGTATTTG+GGG - chr5_4:45349885-45349904 None:intergenic 30.0%
CACTAAACTCATTACGTATT+TGG - chr5_4:45349887-45349906 None:intergenic 30.0%
! ATTTTTCTGTATCGCTGTAT+CGG - chr5_4:45349999-45350018 None:intergenic 30.0%
AATTTGCAAAATTCCCGATA+CGG + chr5_4:45350016-45350035 Msa0853520:intron 30.0%
AATAAATTACCGATACGTGT+CGG - chr5_4:45350304-45350323 None:intergenic 30.0%
! CAGATTCTCACTCATAATTT+TGG - chr5_4:45350602-45350621 None:intergenic 30.0%
CAAAATTATGAGTGAGAATC+TGG + chr5_4:45350600-45350619 Msa0853520:intron 30.0%
! CTTTGCTTTATTGTTCTCTT+TGG - chr5_4:45350700-45350719 None:intergenic 30.0%
CAAAGAGAACAATAAAGCAA+AGG + chr5_4:45350698-45350717 Msa0853520:intron 30.0%
AGGCGAACAATTAAAAAATG+AGG - chr5_4:45350946-45350965 None:intergenic 30.0%
CATTCATTTAACTCTTTGCT+AGG + chr5_4:45350998-45351017 Msa0853520:intron 30.0%
AGGTGAAGGTTTCCAATTAT+TGG - chr5_4:45347349-45347368 None:intergenic 35.0%
! AGTGATTGAAGTGTTCTATG+TGG - chr5_4:45347385-45347404 None:intergenic 35.0%
CCAAGTTGTAAGGACATAAT+TGG - chr5_4:45347424-45347443 None:intergenic 35.0%
CCAATTATGTCCTTACAACT+TGG + chr5_4:45347421-45347440 Msa0853520:CDS 35.0%
! ATGACATCCATTTTGCAAGT+CGG + chr5_4:45347503-45347522 Msa0853520:CDS 35.0%
!!! GCATCTCAGCTCATTTTTTA+TGG + chr5_4:45347538-45347557 Msa0853520:CDS 35.0%
! TTTTTATGGTTCCAAAGGGT+TGG + chr5_4:45347552-45347571 Msa0853520:CDS 35.0%
TTCTTTACACTACGCCAATA+AGG - chr5_4:45347595-45347614 None:intergenic 35.0%
GCTTCAAAAGTTGAGATGTT+TGG + chr5_4:45347640-45347659 Msa0853520:CDS 35.0%
TTGAGATGTTTGGTCCTATT+AGG + chr5_4:45347650-45347669 Msa0853520:CDS 35.0%
!!! GGATGTTTTGGTTAAGTCAT+TGG + chr5_4:45347684-45347703 Msa0853520:CDS 35.0%
! TTGAAGAAGTTGGTTCAAGA+AGG + chr5_4:45347820-45347839 Msa0853520:CDS 35.0%
! TATGCTTGGAGCTTTTAATC+CGG + chr5_4:45347849-45347868 Msa0853520:CDS 35.0%
CACATACCTGAAGATCAAAA+GGG - chr5_4:45347897-45347916 None:intergenic 35.0%
! CTTTTGATCTTCAGGTATGT+GGG + chr5_4:45347896-45347915 Msa0853520:intron 35.0%
TACACGAGGAAAAAACATGA+AGG - chr5_4:45348032-45348051 None:intergenic 35.0%
GGGAAAATTGAGATTAAACC+AGG - chr5_4:45348067-45348086 None:intergenic 35.0%
GACTGTCAACAATTGAAAAG+AGG + chr5_4:45348158-45348177 Msa0853520:intron 35.0%
CTGTCAACAATTGAAAAGAG+GGG + chr5_4:45348160-45348179 Msa0853520:intron 35.0%
AGTACTACAAGGGAGAAAAT+AGG + chr5_4:45348210-45348229 Msa0853520:intron 35.0%
GTACTACAAGGGAGAAAATA+GGG + chr5_4:45348211-45348230 Msa0853520:intron 35.0%
AGTGTGAGGATCTCTTTAAT+AGG + chr5_4:45349258-45349277 Msa0853520:intron 35.0%
TGGTAATTTAGAGAGCAAGA+TGG - chr5_4:45349517-45349536 None:intergenic 35.0%
!! TATGAAGTATTGTCACTCCT+CGG + chr5_4:45349553-45349572 Msa0853520:intron 35.0%
GAGTTATAACCTATGAAGCA+CGG - chr5_4:45349705-45349724 None:intergenic 35.0%
ACATCAATGACTAAACTGGT+TGG - chr5_4:45349780-45349799 None:intergenic 35.0%
CTACCTATCGAATGAAGTAT+CGG + chr5_4:45350241-45350260 Msa0853520:intron 35.0%
AAACCGATACTTCATTCGAT+AGG - chr5_4:45350247-45350266 None:intergenic 35.0%
! ATCGGTTTATTTAGCCGTAT+CGG + chr5_4:45350259-45350278 Msa0853520:intron 35.0%
! TATCAGTATCGGATACATGT+CGG + chr5_4:45350389-45350408 Msa0853520:intron 35.0%
! ACTCTAAAAATGGCGAAGAA+TGG - chr5_4:45350418-45350437 None:intergenic 35.0%
!!! CTTCGCCATTTTTAGAGTAT+CGG + chr5_4:45350420-45350439 Msa0853520:intron 35.0%
! AAGCTCCGATACTCTAAAAA+TGG - chr5_4:45350428-45350447 None:intergenic 35.0%
TTCAAAGAACTCAGACATCT+TGG + chr5_4:45350446-45350465 Msa0853520:intron 35.0%
! CTATTGGTTATACTGCCAAT+TGG + chr5_4:45350495-45350514 Msa0853520:intron 35.0%
AGAGAACAATAAAGCAAAGG+AGG + chr5_4:45350701-45350720 Msa0853520:intron 35.0%
GAGAACAATAAAGCAAAGGA+GGG + chr5_4:45350702-45350721 Msa0853520:intron 35.0%
CGACTAAAATGAAAGTCTGA+CGG - chr5_4:45350758-45350777 None:intergenic 35.0%
TGCAATGACAGTGAACAAAA+TGG + chr5_4:45350914-45350933 Msa0853520:intron 35.0%
! TAAAGCACTTGATGAGGTAT+TGG + chr5_4:45351049-45351068 Msa0853520:CDS 35.0%
GGTATGTGAAAGTGAAGAGA+AGG - chr5_4:45347252-45347271 None:intergenic 40.0%
!! CCAATTATTGGTAGTGTTGG+TGG - chr5_4:45347337-45347356 None:intergenic 40.0%
CCACCAACACTACCAATAAT+TGG + chr5_4:45347334-45347353 Msa0853520:CDS 40.0%
ATTGGAAACCTTCACCTACT+AGG + chr5_4:45347352-45347371 Msa0853520:CDS 40.0%
TATGTGGAAGTTTGCCTAGT+AGG - chr5_4:45347369-45347388 None:intergenic 40.0%
! AATGGATGTCATGCGTTTTG+AGG - chr5_4:45347495-45347514 None:intergenic 40.0%
TTCAGAAAAAGCCAACCCTT+TGG - chr5_4:45347566-45347585 None:intergenic 40.0%
!!! GGGTTGGCTTTTTCTGAATA+TGG + chr5_4:45347568-45347587 Msa0853520:CDS 40.0%
GTTTGGTCCTATTAGGAAGA+AGG + chr5_4:45347657-45347676 Msa0853520:CDS 40.0%
TCCTATTAGGAAGAAGGAGT+TGG + chr5_4:45347663-45347682 Msa0853520:CDS 40.0%
TCCAACTCCTTCTTCCTAAT+AGG - chr5_4:45347667-45347686 None:intergenic 40.0%
! GAAGAAGGAGTTGGATGTTT+TGG + chr5_4:45347672-45347691 Msa0853520:CDS 40.0%
GTCATTGGAGAAAGTTGCTT+TGG + chr5_4:45347699-45347718 Msa0853520:CDS 40.0%
! TTGGAGAAAGTTGCTTTGGT+AGG + chr5_4:45347703-45347722 Msa0853520:CDS 40.0%
! GAAGTTGGTTCAAGAAGGAA+TGG + chr5_4:45347825-45347844 Msa0853520:CDS 40.0%
ATCCGGCTGATTATGTTTCT+TGG + chr5_4:45347866-45347885 Msa0853520:CDS 40.0%
AGCCAAGAAACATAATCAGC+CGG - chr5_4:45347871-45347890 None:intergenic 40.0%
GCTGATTATGTTTCTTGGCT+AGG + chr5_4:45347871-45347890 Msa0853520:CDS 40.0%
CCACATACCTGAAGATCAAA+AGG - chr5_4:45347898-45347917 None:intergenic 40.0%
! CCTTTTGATCTTCAGGTATG+TGG + chr5_4:45347895-45347914 Msa0853520:intron 40.0%
AACTCTACGATTGATGCTCA+TGG - chr5_4:45348476-45348495 None:intergenic 40.0%
ATAAACAAGTGCGAGCAATG+AGG + chr5_4:45348830-45348849 Msa0853520:intron 40.0%
AACCAAACACGGATTCAATG+CGG - chr5_4:45348875-45348894 None:intergenic 40.0%
CATAGGTTGTGACAAAGAGA+TGG - chr5_4:45349537-45349556 None:intergenic 40.0%
GAGGAGTGACAATACTTCAT+AGG - chr5_4:45349554-45349573 None:intergenic 40.0%
GATTAGGTGTGTTATGGTGT+CGG + chr5_4:45349575-45349594 Msa0853520:intron 40.0%
!! TTACTTTCATTTTGGTCCCC+AGG - chr5_4:45349845-45349864 None:intergenic 40.0%
ATCGGTATCGTATCAGGTAT+CGG - chr5_4:45349981-45350000 None:intergenic 40.0%
TCGGTTTATTTAGCCGTATC+GGG + chr5_4:45350260-45350279 Msa0853520:intron 40.0%
! TACGCGTATCAGAGAAGTAT+CGG - chr5_4:45350351-45350370 None:intergenic 40.0%
TACTTCTCTGATACGCGTAT+CGG + chr5_4:45350352-45350371 Msa0853520:intron 40.0%
! CGATTTTGCTTCCTTGTTAG+AGG - chr5_4:45350642-45350661 None:intergenic 40.0%
TTGACTGTTAGATGCTGACA+AGG - chr5_4:45350800-45350819 None:intergenic 40.0%
AGCACTAAACTGACTAACCA+AGG + chr5_4:45350831-45350850 Msa0853520:intron 40.0%
ACTCACGCTAAAAGGCAAAA+CGG - chr5_4:45350871-45350890 None:intergenic 40.0%
TACCTCATCAAGTGCTTTAC+CGG - chr5_4:45351048-45351067 None:intergenic 40.0%
TGTAGACAAAGTTCGTCATC+AGG + chr5_4:45351106-45351125 Msa0853520:CDS 40.0%
GTAGACAAAGTTCGTCATCA+GGG + chr5_4:45351107-45351126 Msa0853520:CDS 40.0%
GAAGTTTGCCTAGTAGGTGA+AGG - chr5_4:45347363-45347382 None:intergenic 45.0%
TGGAACTTGGCCAAGTTGTA+AGG - chr5_4:45347434-45347453 None:intergenic 45.0%
AGCTGAGATGCTTGAGTCTT+CGG - chr5_4:45347529-45347548 None:intergenic 45.0%
! GAAAGTTGCTTTGGTAGGTG+AGG + chr5_4:45347708-45347727 Msa0853520:CDS 45.0%
CAAGAAGGAATGGCTATGCT+TGG + chr5_4:45347835-45347854 Msa0853520:CDS 45.0%
GGCTATACCTCCACTAGAAA+TGG - chr5_4:45348432-45348451 None:intergenic 45.0%
ACCAAACACGGATTCAATGC+GGG - chr5_4:45348874-45348893 None:intergenic 45.0%
GTATTGTCACTCCTCGGATT+AGG + chr5_4:45349559-45349578 Msa0853520:intron 45.0%
! TCCTCGGATTAGGTGTGTTA+TGG + chr5_4:45349569-45349588 Msa0853520:intron 45.0%
ACCATAACACACCTAATCCG+AGG - chr5_4:45349573-45349592 None:intergenic 45.0%
TGTCTGTATCCGTGCTTCAT+AGG + chr5_4:45349693-45349712 Msa0853520:intron 45.0%
GTTGACAAGGATACGTGACA+TGG + chr5_4:45349818-45349837 Msa0853520:intron 45.0%
TCGGTATCGTATCAGGTATC+GGG - chr5_4:45349980-45349999 None:intergenic 45.0%
TAAACGTATCCCAGCCGTAT+CGG - chr5_4:45350033-45350052 None:intergenic 45.0%
CGGTTTATTTAGCCGTATCG+GGG + chr5_4:45350261-45350280 Msa0853520:intron 45.0%
GGTTTATTTAGCCGTATCGG+GGG + chr5_4:45350262-45350281 Msa0853520:intron 45.0%
GCTAACTTATACCCCCGATA+CGG - chr5_4:45350276-45350295 None:intergenic 45.0%
TTACCGATACGTGTCGGATA+CGG - chr5_4:45350298-45350317 None:intergenic 45.0%
!! ACGCGTATCAGAGAAGTATC+GGG - chr5_4:45350350-45350369 None:intergenic 45.0%
ACTTCTCTGATACGCGTATC+GGG + chr5_4:45350353-45350372 Msa0853520:intron 45.0%
ATACGCGTATCGGGACATAT+CGG + chr5_4:45350362-45350381 Msa0853520:intron 45.0%
ATATCGGGGCGTATCAGTAT+CGG + chr5_4:45350378-45350397 Msa0853520:intron 45.0%
TATGAGTGAGAATCTGGGTG+TGG + chr5_4:45350606-45350625 Msa0853520:intron 45.0%
AGAATCTGGGTGTGGAATGT+AGG + chr5_4:45350614-45350633 Msa0853520:intron 45.0%
GAATCTGGGTGTGGAATGTA+GGG + chr5_4:45350615-45350634 Msa0853520:intron 45.0%
GAATGTAGGGTCCTCTAACA+AGG + chr5_4:45350628-45350647 Msa0853520:intron 45.0%
! TTGCCTTTTAGCGTGAGTCA+AGG + chr5_4:45350873-45350892 Msa0853520:intron 45.0%
AGTCCTTGACTCACGCTAAA+AGG - chr5_4:45350879-45350898 None:intergenic 45.0%
ACACGAACCTGCAAGAAAAC+CGG + chr5_4:45351026-45351045 Msa0853520:CDS 45.0%
!!! TGCTTTACCGGTTTTCTTGC+AGG - chr5_4:45351036-45351055 None:intergenic 45.0%
! AACCGGTAAAGCACTTGATG+AGG + chr5_4:45351043-45351062 Msa0853520:CDS 45.0%
!!! ATAAATTTTTTTAATAAGTA+GGG + chr5_4:45348294-45348313 Msa0853520:intron 5.0%
!!! AATTTTCATATTTTTTAATA+AGG + chr5_4:45349485-45349504 Msa0853520:intron 5.0%
!! ATTGGTAGTGTTGGTGGACC+TGG - chr5_4:45347331-45347350 None:intergenic 50.0%
!! TCTTCGGCCGACTTGCAAAA+TGG - chr5_4:45347513-45347532 None:intergenic 50.0%
! GCTAGGCCCTTTTGATCTTC+AGG + chr5_4:45347888-45347907 Msa0853520:CDS 50.0%
ACAAGTGCGAGCAATGAGGT+CGG + chr5_4:45348834-45348853 Msa0853520:intron 50.0%
CAAACACGGATTCAATGCGG+GGG - chr5_4:45348872-45348891 None:intergenic 50.0%
CCAAACACGGATTCAATGCG+GGG - chr5_4:45348873-45348892 None:intergenic 50.0%
AAGGATACGTGACATGGACC+TGG + chr5_4:45349824-45349843 Msa0853520:intron 50.0%
AGGATACGTGACATGGACCT+GGG + chr5_4:45349825-45349844 Msa0853520:intron 50.0%
! CGGTATCGTATCAGGTATCG+GGG - chr5_4:45349979-45349998 None:intergenic 50.0%
! CGCTGTATCGGTATCGTATC+AGG - chr5_4:45349987-45350006 None:intergenic 50.0%
TGCAAAATTCCCGATACGGC+TGG + chr5_4:45350020-45350039 Msa0853520:intron 50.0%
GCAAAATTCCCGATACGGCT+GGG + chr5_4:45350021-45350040 Msa0853520:intron 50.0%
AAACGTATCCCAGCCGTATC+GGG - chr5_4:45350032-45350051 None:intergenic 50.0%
TAGCCGTATCCGACACGTAT+CGG + chr5_4:45350292-45350311 Msa0853520:intron 50.0%
TACGCGTATCGGGACATATC+GGG + chr5_4:45350363-45350382 Msa0853520:intron 50.0%
CAAGGACTATTGTGACAGCG+AGG + chr5_4:45350891-45350910 Msa0853520:intron 50.0%
GGGGACCCCATTAATACACG+AGG - chr5_4:45348046-45348065 None:intergenic 55.0%
CGTGTATTAATGGGGTCCCC+TGG + chr5_4:45348046-45348065 Msa0853520:intron 55.0%
CAAGTGCGAGCAATGAGGTC+GGG + chr5_4:45348835-45348854 Msa0853520:intron 55.0%
GATTCAATGCGGGGGCAATG+GGG - chr5_4:45348864-45348883 None:intergenic 55.0%
GGATTCAATGCGGGGGCAAT+GGG - chr5_4:45348865-45348884 None:intergenic 55.0%
CCCCGCATTGAATCCGTGTT+TGG + chr5_4:45348870-45348889 Msa0853520:intron 55.0%
GGATACGTGACATGGACCTG+GGG + chr5_4:45349826-45349845 Msa0853520:intron 55.0%
ACGCGTATCGGGACATATCG+GGG + chr5_4:45350364-45350383 Msa0853520:intron 55.0%
CGGTCGCTGAATGTGTACCT+TGG - chr5_4:45350851-45350870 None:intergenic 55.0%
!! GGTAGTGTTGGTGGACCTGG+TGG - chr5_4:45347328-45347347 None:intergenic 60.0%
CGGATTCAATGCGGGGGCAA+TGG - chr5_4:45348866-45348885 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 45347217 45351142 45347217 ID=Msa0853520;Name=Msa0853520
chr5_4 mRNA 45347217 45351142 45347217 ID=Msa0853520-mRNA-1;Parent=Msa0853520;Name=Msa0853520-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|1|1|2|0|271
chr5_4 exon 45347217 45347909 45347217 ID=Msa0853520-mRNA-1:exon:14301;Parent=Msa0853520-mRNA-1
chr5_4 exon 45351020 45351142 45351020 ID=Msa0853520-mRNA-1:exon:14302;Parent=Msa0853520-mRNA-1
chr5_4 CDS 45347217 45347909 45347217 ID=Msa0853520-mRNA-1:cds;Parent=Msa0853520-mRNA-1
chr5_4 CDS 45351020 45351142 45351020 ID=Msa0853520-mRNA-1:cds;Parent=Msa0853520-mRNA-1
Gene Sequence

>Msa0853520

ATGTCTTCTACAACAATCATAATAATTTCTTTCCTTCTCTTCACTTTCACATACCTTTTATTCAAATTCTTCTTACGTGCAAAACAAAACACCATAAATCATAAAAAGCCACCAGGTCCACCAACACTACCAATAATTGGAAACCTTCACCTACTAGGCAAACTTCCACATAGAACACTTCAATCACTCTCCAAAAAATATGGTCCAATTATGTCCTTACAACTTGGCCAAGTTCCAACAATTGTTATTTCATCTTCAAAAGCTGCAGAATCATTCCTCAAAACGCATGACATCCATTTTGCAAGTCGGCCGAAGACTCAAGCATCTCAGCTCATTTTTTATGGTTCCAAAGGGTTGGCTTTTTCTGAATATGGTCCTTATTGGCGTAGTGTAAAGAAACTGTGCACTTTGAAACTTTTAAGTGCTTCAAAAGTTGAGATGTTTGGTCCTATTAGGAAGAAGGAGTTGGATGTTTTGGTTAAGTCATTGGAGAAAGTTGCTTTGGTAGGTGAGGTAGTGAATGTTAGTGAGATTGTAGAGAATCTTATAGAGGATATTGTGTATAAGATGATATTGGGTAGGGGTAAGTATGAGCAATTTGATTTGAAGAAGTTGGTTCAAGAAGGAATGGCTATGCTTGGAGCTTTTAATCCGGCTGATTATGTTTCTTGGCTAGGCCCTTTTGATCTTCAGGGATTTACACGAACCTGCAAGAAAACCGGTAAAGCACTTGATGAGGTATTGGAGATGATAATAAGAGAGCATGAACAAAGCACTAATGTAGACAAAGTTCGTCATCAGGGCCGTCTCCGATAA
Protein sequence

>Msa0853520

MSSTTIIIISFLLFTFTYLLFKFFLRAKQNTINHKKPPGPPTLPIIGNLHLLGKLPHRTLQSLSKKYGPIMSLQLGQVPTIVISSSKAAESFLKTHDIHFASRPKTQASQLIFYGSKGLAFSEYGPYWRSVKKLCTLKLLSASKVEMFGPIRKKELDVLVKSLEKVALVGEVVNVSEIVENLIEDIVYKMILGRGKYEQFDLKKLVQEGMAMLGAFNPADYVSWLGPFDLQGFTRTCKKTGKALDEVLEMIIREHEQSTNVDKVRHQGRLR*