Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292770 | TKY58679.1 | 74.898 | 490 | 67 | 2 | 1 | 434 | 1 | 490 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292770 | sp|O22714|PPR86_ARATH | 56.352 | 488 | 156 | 3 | 4 | 434 | 3 | 490 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292770 | A0A072TSI9 | 84.490 | 490 | 20 | 2 | 1 | 434 | 1 | 490 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1292770 | 0.843728 | 1.172101e-58 | -8.615850e-47 |
| Msa0031340 | Msa1292770 | 0.813165 | 2.938213e-51 | -8.615850e-47 |
| Msa0046100 | Msa1292770 | 0.802111 | 6.552064e-49 | -8.615850e-47 |
| Msa0101810 | Msa1292770 | -0.803746 | 3.008517e-49 | -8.615850e-47 |
| Msa0110970 | Msa1292770 | 0.830441 | 2.931844e-55 | -8.615850e-47 |
| Msa0116770 | Msa1292770 | 0.809913 | 1.495643e-50 | -8.615850e-47 |
| Msa0657970 | Msa1292770 | 0.801156 | 1.028640e-48 | -8.615850e-47 |
| Msa0663380 | Msa1292770 | 0.808274 | 3.357437e-50 | -8.615850e-47 |
| Msa0682330 | Msa1292770 | 0.806931 | 6.473098e-50 | -8.615850e-47 |
| Msa0690520 | Msa1292770 | 0.821247 | 4.469045e-53 | -8.615850e-47 |
| Msa0727710 | Msa1292770 | 0.804570 | 2.027336e-49 | -8.615850e-47 |
| Msa0756630 | Msa1292770 | -0.807400 | 5.149517e-50 | -8.615850e-47 |
| Msa0810220 | Msa1292770 | 0.812332 | 4.470540e-51 | -8.615850e-47 |
| Msa0824660 | Msa1292770 | 0.802737 | 4.867238e-49 | -8.615850e-47 |
| Msa0838580 | Msa1292770 | 0.807150 | 5.816515e-50 | -8.615850e-47 |
| Msa0157290 | Msa1292770 | 0.843872 | 1.072345e-58 | -8.615850e-47 |
| Msa0212990 | Msa1292770 | 0.803968 | 2.706161e-49 | -8.615850e-47 |
| Msa0215320 | Msa1292770 | -0.821362 | 4.203239e-53 | -8.615850e-47 |
| Msa0223260 | Msa1292770 | 0.806653 | 7.408472e-50 | -8.615850e-47 |
| Msa1238930 | Msa1292770 | 0.818766 | 1.651152e-52 | -8.615850e-47 |
| Msa1242220 | Msa1292770 | 0.800716 | 1.265124e-48 | -8.615850e-47 |
| Msa1242240 | Msa1292770 | 0.800730 | 1.256813e-48 | -8.615850e-47 |
| Msa1283840 | Msa1292770 | 0.809670 | 1.687334e-50 | -8.615850e-47 |
| Msa1283860 | Msa1292770 | 0.843812 | 1.113257e-58 | -8.615850e-47 |
| Msa1284260 | Msa1292770 | 0.818491 | 1.906994e-52 | -8.615850e-47 |
| Msa1284680 | Msa1292770 | 0.821187 | 4.612457e-53 | -8.615850e-47 |
| Msa1292760 | Msa1292770 | 0.815549 | 8.735472e-52 | -8.615850e-47 |
| Msa1292770 | Msa1322860 | 0.805616 | 1.224950e-49 | -8.615850e-47 |
| Msa1292770 | Msa1322890 | 0.814504 | 1.489713e-51 | -8.615850e-47 |
| Msa1292770 | Msa1327050 | 0.817731 | 2.831840e-52 | -8.615850e-47 |
| Msa1292770 | Msa1346370 | 0.808445 | 3.086525e-50 | -8.615850e-47 |
| Msa1292770 | Msa1372760 | 0.811849 | 5.699507e-51 | -8.615850e-47 |
| Msa1292770 | Msa1378760 | 0.813612 | 2.344041e-51 | -8.615850e-47 |
| Msa1292770 | Msa1402730 | 0.803485 | 3.408812e-49 | -8.615850e-47 |
| Msa1292770 | Msa1409870 | 0.802933 | 4.433612e-49 | -8.615850e-47 |
| Msa1292770 | Msa1411020 | 0.801609 | 8.305160e-49 | -8.615850e-47 |
| Msa1292770 | Msa1424290 | 0.800313 | 1.528150e-48 | -8.615850e-47 |
| Msa1292770 | Msa1426000 | 0.813113 | 3.016692e-51 | -8.615850e-47 |
| Msa1292770 | Msa1434350 | 0.800664 | 1.295976e-48 | -8.615850e-47 |
| Msa1292770 | Msa1439320 | 0.801535 | 8.602240e-49 | -8.615850e-47 |
| Msa1292770 | Msa1461300 | 0.808551 | 2.930054e-50 | -8.615850e-47 |
| Msa0370110 | Msa1292770 | 0.808205 | 3.471673e-50 | -8.615850e-47 |
| Msa0395790 | Msa1292770 | 0.820208 | 7.742888e-53 | -8.615850e-47 |
| Msa0410500 | Msa1292770 | 0.805157 | 1.528617e-49 | -8.615850e-47 |
| Msa0464680 | Msa1292770 | 0.807441 | 5.046553e-50 | -8.615850e-47 |
| Msa1014540 | Msa1292770 | 0.801436 | 9.011867e-49 | -8.615850e-47 |
| Msa1027630 | Msa1292770 | 0.809314 | 2.011437e-50 | -8.615850e-47 |
| Msa1030970 | Msa1292770 | 0.828246 | 1.000370e-54 | -8.615850e-47 |
| Msa1045200 | Msa1292770 | 0.802995 | 4.304854e-49 | -8.615850e-47 |
| Msa1070010 | Msa1292770 | 0.814972 | 1.173037e-51 | -8.615850e-47 |
| Msa1075220 | Msa1292770 | -0.800856 | 1.184434e-48 | -8.615850e-47 |
| Msa1075540 | Msa1292770 | 0.806629 | 7.495143e-50 | -8.615850e-47 |
| Msa1082500 | Msa1292770 | 0.806883 | 6.624729e-50 | -8.615850e-47 |
| Msa1085300 | Msa1292770 | 0.805753 | 1.146350e-49 | -8.615850e-47 |
| Msa0243100 | Msa1292770 | 0.811778 | 5.905767e-51 | -8.615850e-47 |
| Msa0244860 | Msa1292770 | 0.811507 | 6.762453e-51 | -8.615850e-47 |
| Msa0283450 | Msa1292770 | 0.802036 | 6.788594e-49 | -8.615850e-47 |
| Msa0283520 | Msa1292770 | 0.803468 | 3.436246e-49 | -8.615850e-47 |
| Msa0287650 | Msa1292770 | 0.818833 | 1.594287e-52 | -8.615850e-47 |
| Msa0288100 | Msa1292770 | 0.807029 | 6.170725e-50 | -8.615850e-47 |
| Msa0332000 | Msa1292770 | 0.804054 | 2.597286e-49 | -8.615850e-47 |
| Msa0345970 | Msa1292770 | 0.820421 | 6.919904e-53 | -8.615850e-47 |
| Msa0362780 | Msa1292770 | 0.803396 | 3.557346e-49 | -8.615850e-47 |
| Msa1108160 | Msa1292770 | 0.811917 | 5.508222e-51 | -8.615850e-47 |
| Msa1137570 | Msa1292770 | 0.830903 | 2.259183e-55 | -8.615850e-47 |
| Msa1154030 | Msa1292770 | 0.800374 | 1.484954e-48 | -8.615850e-47 |
| Msa1162550 | Msa1292770 | -0.800332 | 1.514990e-48 | -8.615850e-47 |
| Msa0484780 | Msa1292770 | 0.800802 | 1.214928e-48 | -8.615850e-47 |
| Msa0488560 | Msa1292770 | 0.808916 | 2.447870e-50 | -8.615850e-47 |
| Msa0495330 | Msa1292770 | 0.807376 | 5.208924e-50 | -8.615850e-47 |
| Msa0533070 | Msa1292770 | 0.813177 | 2.920234e-51 | -8.615850e-47 |
| Msa0574890 | Msa1292770 | 0.811029 | 8.587038e-51 | -8.615850e-47 |
| Msa0585300 | Msa1292770 | 0.802316 | 5.943177e-49 | -8.615850e-47 |
| Msa0602240 | Msa1292770 | 0.804350 | 2.253028e-49 | -8.615850e-47 |
| Msa0602250 | Msa1292770 | 0.816358 | 5.763969e-52 | -8.615850e-47 |
| Msa0861510 | Msa1292770 | 0.802539 | 5.346506e-49 | -8.615850e-47 |
| Msa0861600 | Msa1292770 | 0.801700 | 7.955799e-49 | -8.615850e-47 |
| Msa0880140 | Msa1292770 | 0.840316 | 9.356952e-58 | -8.615850e-47 |
| Msa0908050 | Msa1292770 | 0.808554 | 2.925837e-50 | -8.615850e-47 |
| Msa0909120 | Msa1292770 | 0.808883 | 2.488089e-50 | -8.615850e-47 |
| Msa0954130 | Msa1292770 | 0.808088 | 3.677589e-50 | -8.615850e-47 |
| Msa0969520 | Msa1292770 | 0.807828 | 4.176776e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292770 | MtrunA17_Chr8g0368151 | 84.490 | 490 | 20 | 2 | 1 | 434 | 1 | 490 | 0.0 | 827 |
| Msa1292770 | MtrunA17_Chr1g0194521 | 32.965 | 452 | 236 | 7 | 31 | 428 | 101 | 539 | 4.87e-66 | 220 |
| Msa1292770 | MtrunA17_Chr1g0185601 | 28.636 | 440 | 246 | 8 | 55 | 433 | 69 | 501 | 1.37e-57 | 197 |
| Msa1292770 | MtrunA17_Chr2g0282091 | 26.490 | 453 | 273 | 5 | 24 | 419 | 29 | 478 | 6.19e-50 | 176 |
| Msa1292770 | MtrunA17_Chr8g0359961 | 24.826 | 431 | 266 | 5 | 25 | 399 | 35 | 463 | 1.56e-47 | 170 |
| Msa1292770 | MtrunA17_Chr4g0021331 | 28.111 | 434 | 246 | 7 | 6 | 377 | 8 | 437 | 4.96e-47 | 168 |
| Msa1292770 | MtrunA17_Chr2g0303221 | 29.227 | 414 | 229 | 9 | 23 | 377 | 31 | 439 | 5.52e-47 | 168 |
| Msa1292770 | MtrunA17_Chr3g0132571 | 25.210 | 476 | 289 | 9 | 17 | 432 | 34 | 502 | 9.32e-40 | 149 |
| Msa1292770 | MtrunA17_Chr2g0324251 | 25.776 | 419 | 243 | 8 | 28 | 382 | 37 | 451 | 4.87e-33 | 130 |
| Msa1292770 | MtrunA17_Chr8g0335951 | 23.218 | 435 | 240 | 7 | 24 | 428 | 78 | 448 | 5.83e-30 | 120 |
| Msa1292770 | MtrunA17_Chr1g0155351 | 33.054 | 239 | 130 | 3 | 43 | 251 | 74 | 312 | 1.63e-29 | 119 |
| Msa1292770 | MtrunA17_Chr7g0256181 | 22.747 | 466 | 300 | 9 | 15 | 428 | 150 | 607 | 7.02e-28 | 116 |
| Msa1292770 | MtrunA17_Chr1g0171501 | 24.324 | 444 | 268 | 8 | 35 | 421 | 151 | 583 | 1.79e-25 | 108 |
| Msa1292770 | MtrunA17_Chr8g0349421 | 25.311 | 241 | 145 | 4 | 216 | 428 | 3 | 236 | 4.06e-17 | 80.5 |
| Msa1292770 | MtrunA17_Chr7g0220501 | 29.442 | 197 | 131 | 4 | 142 | 338 | 331 | 519 | 2.84e-16 | 81.3 |
| Msa1292770 | MtrunA17_Chr2g0328121 | 21.882 | 457 | 292 | 11 | 38 | 434 | 58 | 509 | 4.92e-16 | 80.1 |
| Msa1292770 | MtrunA17_Chr4g0059671 | 24.199 | 281 | 194 | 6 | 62 | 338 | 109 | 374 | 9.16e-16 | 79.7 |
| Msa1292770 | MtrunA17_Chr3g0143851 | 23.264 | 288 | 184 | 4 | 151 | 409 | 302 | 581 | 2.45e-13 | 72.0 |
| Msa1292770 | MtrunA17_Chr1g0160881 | 24.339 | 189 | 135 | 2 | 133 | 321 | 455 | 635 | 2.91e-13 | 72.0 |
| Msa1292770 | MtrunA17_Chr3g0089851 | 23.529 | 255 | 179 | 5 | 151 | 403 | 188 | 428 | 1.46e-12 | 69.3 |
| Msa1292770 | MtrunA17_Chr1g0211781 | 23.647 | 351 | 233 | 10 | 82 | 424 | 418 | 741 | 3.82e-12 | 68.6 |
| Msa1292770 | MtrunA17_Chr5g0410901 | 23.507 | 268 | 185 | 6 | 45 | 308 | 410 | 661 | 6.33e-12 | 67.8 |
| Msa1292770 | MtrunA17_Chr1g0210801 | 21.495 | 321 | 208 | 7 | 97 | 387 | 249 | 555 | 7.31e-12 | 67.4 |
| Msa1292770 | MtrunA17_Chr7g0220481 | 25.389 | 193 | 136 | 4 | 142 | 334 | 296 | 480 | 9.08e-12 | 67.4 |
| Msa1292770 | MtrunA17_Chr1g0211881 | 25.000 | 232 | 158 | 4 | 147 | 377 | 297 | 513 | 1.08e-11 | 66.6 |
| Msa1292770 | MtrunA17_Chr6g0478001 | 25.128 | 195 | 131 | 3 | 126 | 320 | 353 | 532 | 1.10e-11 | 66.6 |
| Msa1292770 | MtrunA17_Chr6g0471531 | 25.521 | 192 | 128 | 3 | 126 | 317 | 362 | 538 | 1.61e-11 | 66.2 |
| Msa1292770 | MtrunA17_Chr8g0349431 | 32.203 | 118 | 78 | 1 | 36 | 151 | 6 | 123 | 1.64e-11 | 61.6 |
| Msa1292770 | MtrunA17_Chr3g0136851 | 23.373 | 338 | 183 | 9 | 144 | 414 | 249 | 577 | 3.25e-11 | 65.9 |
| Msa1292770 | MtrunA17_Chr6g0481971 | 26.154 | 195 | 129 | 4 | 126 | 320 | 339 | 518 | 4.04e-11 | 65.1 |
| Msa1292770 | MtrunA17_Chr6g0482561 | 22.408 | 299 | 211 | 5 | 126 | 424 | 80 | 357 | 7.81e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292770 | AT1G60770.1 | 56.352 | 488 | 156 | 3 | 4 | 434 | 3 | 490 | 0.0 | 570 |
| Msa1292770 | AT1G02370.1 | 35.776 | 464 | 240 | 4 | 25 | 431 | 73 | 535 | 1.25e-87 | 277 |
| Msa1292770 | AT4G01990.1 | 34.238 | 479 | 248 | 8 | 12 | 431 | 30 | 500 | 5.01e-77 | 248 |
| Msa1292770 | AT4G02820.1 | 29.932 | 441 | 245 | 7 | 50 | 433 | 88 | 521 | 7.90e-59 | 201 |
| Msa1292770 | AT1G02150.1 | 29.932 | 441 | 247 | 6 | 2 | 383 | 46 | 483 | 2.01e-55 | 192 |
| Msa1292770 | AT4G21705.1 | 26.552 | 467 | 283 | 6 | 24 | 432 | 26 | 490 | 1.93e-51 | 181 |
| Msa1292770 | AT5G27460.1 | 26.490 | 453 | 267 | 7 | 28 | 418 | 43 | 491 | 1.17e-42 | 157 |
| Msa1292770 | AT2G20710.1 | 25.057 | 439 | 263 | 8 | 23 | 403 | 38 | 468 | 1.11e-36 | 140 |
| Msa1292770 | AT2G20710.2 | 26.216 | 370 | 208 | 7 | 91 | 403 | 12 | 373 | 2.61e-33 | 129 |
| Msa1292770 | AT5G09450.1 | 29.010 | 293 | 162 | 6 | 43 | 300 | 75 | 356 | 6.32e-28 | 114 |
| Msa1292770 | AT1G80270.1 | 24.379 | 443 | 266 | 11 | 37 | 421 | 142 | 573 | 5.38e-26 | 111 |
| Msa1292770 | AT1G80270.3 | 24.379 | 443 | 266 | 11 | 37 | 421 | 142 | 573 | 5.38e-26 | 111 |
| Msa1292770 | AT1G80270.2 | 24.379 | 443 | 266 | 11 | 37 | 421 | 142 | 573 | 5.38e-26 | 111 |
| Msa1292770 | AT1G80270.5 | 24.379 | 443 | 266 | 11 | 37 | 421 | 142 | 573 | 5.38e-26 | 111 |
| Msa1292770 | AT1G80270.4 | 24.379 | 443 | 266 | 11 | 37 | 421 | 142 | 573 | 5.38e-26 | 111 |
| Msa1292770 | AT1G15480.1 | 23.490 | 447 | 269 | 9 | 35 | 421 | 138 | 571 | 9.27e-22 | 98.2 |
| Msa1292770 | AT1G28020.1 | 25.977 | 435 | 244 | 12 | 40 | 405 | 60 | 485 | 5.74e-21 | 95.5 |
| Msa1292770 | AT3G15590.1 | 22.907 | 454 | 281 | 10 | 31 | 422 | 141 | 587 | 8.29e-20 | 92.4 |
| Msa1292770 | AT3G15590.2 | 22.907 | 454 | 281 | 10 | 31 | 422 | 141 | 587 | 8.29e-20 | 92.4 |
| Msa1292770 | AT5G42310.1 | 24.542 | 273 | 186 | 7 | 151 | 420 | 325 | 580 | 7.10e-15 | 77.4 |
| Msa1292770 | AT2G35130.3 | 23.547 | 344 | 213 | 8 | 74 | 384 | 245 | 571 | 1.82e-14 | 75.9 |
| Msa1292770 | AT2G35130.1 | 23.547 | 344 | 213 | 8 | 74 | 384 | 248 | 574 | 1.91e-14 | 75.9 |
| Msa1292770 | AT2G35130.2 | 23.547 | 344 | 213 | 8 | 74 | 384 | 270 | 596 | 2.15e-14 | 75.9 |
| Msa1292770 | AT3G11380.1 | 26.182 | 275 | 159 | 6 | 62 | 300 | 82 | 348 | 1.00e-13 | 73.6 |
| Msa1292770 | AT1G03560.1 | 21.555 | 283 | 206 | 4 | 144 | 425 | 201 | 468 | 7.39e-12 | 67.8 |
| Msa1292770 | AT3G06430.1 | 21.824 | 307 | 221 | 5 | 98 | 403 | 97 | 385 | 1.13e-11 | 67.0 |
| Msa1292770 | AT5G02860.1 | 23.607 | 305 | 203 | 7 | 124 | 423 | 244 | 523 | 2.22e-11 | 66.6 |
| Msa1292770 | AT5G02860.1 | 26.471 | 204 | 134 | 3 | 144 | 343 | 503 | 694 | 9.21e-11 | 64.7 |
| Msa1292770 | AT5G02860.4 | 23.607 | 305 | 203 | 7 | 124 | 423 | 244 | 523 | 2.22e-11 | 66.6 |
| Msa1292770 | AT5G02860.4 | 26.471 | 204 | 134 | 3 | 144 | 343 | 503 | 694 | 9.21e-11 | 64.7 |
| Msa1292770 | AT5G02860.2 | 23.607 | 305 | 203 | 7 | 124 | 423 | 244 | 523 | 2.22e-11 | 66.6 |
| Msa1292770 | AT5G02860.2 | 26.471 | 204 | 134 | 3 | 144 | 343 | 503 | 694 | 9.21e-11 | 64.7 |
| Msa1292770 | AT5G02860.5 | 23.607 | 305 | 203 | 7 | 124 | 423 | 244 | 523 | 2.22e-11 | 66.6 |
| Msa1292770 | AT5G02860.5 | 26.471 | 204 | 134 | 3 | 144 | 343 | 503 | 694 | 9.21e-11 | 64.7 |
| Msa1292770 | AT5G02860.3 | 23.607 | 305 | 203 | 7 | 124 | 423 | 244 | 523 | 2.22e-11 | 66.6 |
| Msa1292770 | AT5G02860.3 | 26.471 | 204 | 134 | 3 | 144 | 343 | 503 | 694 | 9.21e-11 | 64.7 |
| Msa1292770 | AT5G48730.1 | 21.708 | 281 | 197 | 7 | 122 | 400 | 184 | 443 | 2.56e-11 | 65.9 |
| Msa1292770 | AT1G77360.2 | 23.295 | 352 | 230 | 11 | 52 | 396 | 99 | 417 | 8.25e-11 | 64.3 |
Find 85 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCAGTTAATGATATTT+CGG | 0.213004 | 8_3:-49332904 | Msa1292770:CDS |
| ATTGCATTGTATGGGAAAAT+AGG | 0.246284 | 8_3:-49332702 | Msa1292770:CDS |
| GCTGCAGTTAATGATATTTC+GGG | 0.262141 | 8_3:-49332903 | Msa1292770:CDS |
| CAGTTTCTAATTGCATTGTA+TGG | 0.296804 | 8_3:-49332711 | Msa1292770:CDS |
| ATATAGCCTCAAGCAACTTA+TGG | 0.298617 | 8_3:+49332073 | None:intergenic |
| GTGGTAAGCGCGTTTATAAA+TGG | 0.325159 | 8_3:-49335066 | Msa1292770:CDS |
| CGAGTTGCAAATGTATTGAT+AGG | 0.332634 | 8_3:-49332510 | Msa1292770:CDS |
| CCAAGCTATACATATTGATT+TGG | 0.346564 | 8_3:-49333238 | Msa1292770:CDS |
| ATTATATCAACCTGCTCTTA+AGG | 0.369801 | 8_3:-49335005 | Msa1292770:intron |
| CATACAATGCAATTAGAAAC+TGG | 0.399606 | 8_3:+49332712 | None:intergenic |
| TATAGCCTCAAGCAACTTAT+GGG | 0.416214 | 8_3:+49332074 | None:intergenic |
| TAAAATCTGCATTCCGCAAA+TGG | 0.426781 | 8_3:+49332379 | None:intergenic |
| GGAGAAGGCTGAAGAAATAA+AGG | 0.429471 | 8_3:-49332463 | Msa1292770:CDS |
| GGTCTTTATCATATTCCTCT+TGG | 0.433190 | 8_3:+49333269 | None:intergenic |
| AAGAAATCTGTGGAATCTCT+AGG | 0.439531 | 8_3:-49332204 | Msa1292770:CDS |
| ACATTATATGTGTAAGAATC+CGG | 0.442518 | 8_3:+49332942 | None:intergenic |
| GGAAAGTGCACTTAAGGAAT+TGG | 0.443773 | 8_3:-49332769 | Msa1292770:CDS |
| ATTCTTACACATATAATGTA+TGG | 0.452805 | 8_3:-49332938 | Msa1292770:CDS |
| CGCGTTTATAAATGGGAAGT+TGG | 0.453242 | 8_3:-49335058 | Msa1292770:CDS |
| GATGGCGGAAAGTGCACTTA+AGG | 0.456780 | 8_3:-49332775 | Msa1292770:CDS |
| CAGAAAAGTGTTTCCGTGAG+TGG | 0.460026 | 8_3:-49332560 | Msa1292770:CDS |
| TGATATTTCGGGTGTTGAAA+GGG | 0.472069 | 8_3:-49332892 | Msa1292770:CDS |
| GCAGAGGGAATGGTGAAAAG+TGG | 0.476052 | 8_3:-49332317 | Msa1292770:CDS |
| ATACCTATTGTCTCAGATGA+TGG | 0.482076 | 8_3:+49332291 | None:intergenic |
| AGTTTCTAATTGCATTGTAT+GGG | 0.482705 | 8_3:-49332710 | Msa1292770:CDS |
| TGGTAAGCGCGTTTATAAAT+GGG | 0.483432 | 8_3:-49335065 | Msa1292770:CDS |
| ATGATATTTCGGGTGTTGAA+AGG | 0.485581 | 8_3:-49332893 | Msa1292770:CDS |
| GTTCCATCATCTGAGACAAT+AGG | 0.486056 | 8_3:-49332294 | Msa1292770:CDS |
| TTATCCGAGGCAATCTCAAT+TGG | 0.489356 | 8_3:-49332339 | Msa1292770:CDS |
| ATCTCAATTGGCAGAGGGAA+TGG | 0.491176 | 8_3:-49332327 | Msa1292770:CDS |
| AGGAGCGTGCTCGAAGGAGG+GGG | 0.492105 | 8_3:-49332443 | Msa1292770:CDS |
| CTTAATCAGTTTATTAAGAG+TGG | 0.492152 | 8_3:-49335085 | Msa1292770:CDS |
| AGAAATCTGTGGAATCTCTA+GGG | 0.508497 | 8_3:-49332203 | Msa1292770:CDS |
| GAGCAAGAGAAGGATGTTGA+TGG | 0.508667 | 8_3:-49332252 | Msa1292770:CDS |
| CCAAATCAATATGTATAGCT+TGG | 0.509051 | 8_3:+49333238 | None:intergenic |
| ATATGCAAAATTAAATATGC+TGG | 0.510071 | 8_3:-49332484 | Msa1292770:CDS |
| GAGTTGCAAATGTATTGATA+GGG | 0.511075 | 8_3:-49332509 | Msa1292770:CDS |
| ATGTCTCTGATGCAACGTTA+CGG | 0.511411 | 8_3:-49335211 | Msa1292770:CDS |
| ATTAGAACTTATGCAGCTGC+TGG | 0.514793 | 8_3:-49332159 | Msa1292770:CDS |
| CAGGTTGATATAATTTCCGT+TGG | 0.517340 | 8_3:+49335014 | None:intergenic |
| GTCTATCATTCAAGAAATGA+AGG | 0.517364 | 8_3:-49332979 | Msa1292770:CDS |
| TTCATTTCTTGAATGATAGA+CGG | 0.521747 | 8_3:+49332981 | None:intergenic |
| ATGGTCGAGTCACTAGAGAT+TGG | 0.524207 | 8_3:-49332848 | Msa1292770:CDS |
| CGCTTAAGAAGCTTCGCCAA+CGG | 0.533742 | 8_3:-49335030 | Msa1292770:CDS |
| AAAGGAGCGTGCTCGAAGGA+GGG | 0.535699 | 8_3:-49332445 | Msa1292770:CDS |
| TGTGGAATCTCTAGGGGAAG+AGG | 0.535857 | 8_3:-49332196 | Msa1292770:CDS |
| GGGTTATTGATGAGATGAAG+AGG | 0.539631 | 8_3:-49332872 | Msa1292770:CDS |
| AAAATTAAATATGCTGGAGA+AGG | 0.558464 | 8_3:-49332478 | Msa1292770:CDS |
| AAGGAGCGTGCTCGAAGGAG+GGG | 0.560180 | 8_3:-49332444 | Msa1292770:CDS |
| GGTTATTGATGAGATGAAGA+GGG | 0.563994 | 8_3:-49332871 | Msa1292770:CDS |
| AAGGAATTGGAGAAGAGGAA+TGG | 0.564531 | 8_3:-49332756 | Msa1292770:CDS |
| TGCTAACTTGTTTGAGATGG+CGG | 0.566426 | 8_3:-49332790 | Msa1292770:CDS |
| TGATGCTAACTTGTTTGAGA+TGG | 0.576175 | 8_3:-49332793 | Msa1292770:CDS |
| CAGAGGGAATGGTGAAAAGT+GGG | 0.578045 | 8_3:-49332316 | Msa1292770:CDS |
| TACTTGAAACTCTTCAAAGA+CGG | 0.580431 | 8_3:-49335136 | Msa1292770:CDS |
| AGAAAAGTGTTTCCGTGAGT+GGG | 0.581496 | 8_3:-49332559 | Msa1292770:CDS |
| TATGCAACGACGATTGAAGA+TGG | 0.587542 | 8_3:-49332121 | Msa1292770:CDS |
| GGAGCGTGCTCGAAGGAGGG+GGG | 0.589401 | 8_3:-49332442 | Msa1292770:CDS |
| GTTGCAGCTATCAGAAACAA+TGG | 0.589715 | 8_3:-49333292 | Msa1292770:intron |
| CACTTAAGGAATTGGAGAAG+AGG | 0.589748 | 8_3:-49332761 | Msa1292770:CDS |
| CGAAATCTTGAAGAAATCTG+TGG | 0.590780 | 8_3:-49332214 | Msa1292770:CDS |
| GAGGCAATCTCAATTGGCAG+AGG | 0.596441 | 8_3:-49332333 | Msa1292770:CDS |
| GGTTGTGGATTGTTTATCCG+AGG | 0.596446 | 8_3:-49332352 | Msa1292770:CDS |
| TAAAGGAGCGTGCTCGAAGG+AGG | 0.597008 | 8_3:-49332446 | Msa1292770:CDS |
| AATTTACATGAATCACTCCT+CGG | 0.599378 | 8_3:+49332050 | None:intergenic |
| GAACTTATGCAGCTGCTGGT+AGG | 0.604154 | 8_3:-49332155 | Msa1292770:CDS |
| ATGTATAGCTTGGTCACTGA+CGG | 0.607677 | 8_3:+49333248 | None:intergenic |
| TGCAGCTTGATTCCCACTCA+CGG | 0.609199 | 8_3:+49332547 | None:intergenic |
| AGTTGCAAATGTATTGATAG+GGG | 0.611891 | 8_3:-49332508 | Msa1292770:CDS |
| TCTGCCAATTGAGATTGCCT+CGG | 0.611905 | 8_3:+49332335 | None:intergenic |
| CATCAACATAAATAGACGCA+AGG | 0.616654 | 8_3:+49332811 | None:intergenic |
| TTGAAACTCTTCAAAGACGG+TGG | 0.620058 | 8_3:-49335133 | Msa1292770:CDS |
| GATTTGGCTGCAAAAGCTAG+AGG | 0.623456 | 8_3:-49333222 | Msa1292770:CDS |
| GAAGGCTAGCAATATCATGC+CGG | 0.629396 | 8_3:-49332961 | Msa1292770:CDS |
| GAAGCACTACGAGCAAGAGA+AGG | 0.634627 | 8_3:-49332262 | Msa1292770:CDS |
| AGGCAATCTCAATTGGCAGA+GGG | 0.636425 | 8_3:-49332332 | Msa1292770:CDS |
| GAAATCTGTGGAATCTCTAG+GGG | 0.639197 | 8_3:-49332202 | Msa1292770:CDS |
| GTTAACTTGAAAGATCTCCC+AGG | 0.640592 | 8_3:-49332585 | Msa1292770:CDS |
| ATTGATGAGATGAAGAGGGA+TGG | 0.641079 | 8_3:-49332867 | Msa1292770:CDS |
| ACTTCTCAACTGCTACTGCA+AGG | 0.646187 | 8_3:-49333130 | Msa1292770:CDS |
| AAATAAAGGAGCGTGCTCGA+AGG | 0.661855 | 8_3:-49332449 | Msa1292770:CDS |
| TATCAGAAACAATGGCCAAG+AGG | 0.670222 | 8_3:-49333284 | Msa1292770:CDS |
| AGATGCCCATAAGTTGCTTG+AGG | 0.673041 | 8_3:-49332079 | Msa1292770:CDS |
| GTTGCTTGAGGCTATATCCG+AGG | 0.687725 | 8_3:-49332067 | Msa1292770:CDS |
| TTGATGACTGATAAAGCTGA+AGG | 0.694285 | 8_3:-49333105 | Msa1292770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAATAAGATTATATAT+TGG | - | chr8_3:49332354-49332373 | Msa1292770:CDS | 10.0% |
| !!! | GTTAACTTTTTTTTTTTTTT+GGG | + | chr8_3:49333119-49333138 | None:intergenic | 10.0% |
| !! | GTAATTTATAATTATATTCA+TGG | - | chr8_3:49333938-49333957 | Msa1292770:intron | 10.0% |
| !! | ATTGAAAATAATAATAACCT+AGG | + | chr8_3:49332317-49332336 | None:intergenic | 15.0% |
| !!! | GGTTAACTTTTTTTTTTTTT+TGG | + | chr8_3:49333120-49333139 | None:intergenic | 15.0% |
| !! | AATAAAATGATATATTAGCT+TGG | - | chr8_3:49333197-49333216 | Msa1292770:CDS | 15.0% |
| !!! | ATAAAATGATATATTAGCTT+GGG | - | chr8_3:49333198-49333217 | Msa1292770:CDS | 15.0% |
| !!! | GCAAATTGTTAATTTTTTTT+TGG | - | chr8_3:49333335-49333354 | Msa1292770:intron | 15.0% |
| !!! | AATAAGATTATATATTGGCT+TGG | - | chr8_3:49332359-49332378 | Msa1292770:CDS | 20.0% |
| !!! | TTTTTGTTATATGTTCTGTT+TGG | - | chr8_3:49332398-49332417 | Msa1292770:CDS | 20.0% |
| !! | TTTGTAGAATTTATGAAAGT+AGG | - | chr8_3:49332560-49332579 | Msa1292770:CDS | 20.0% |
| !! | TATCATAGAATCATAAAATG+AGG | - | chr8_3:49333240-49333259 | Msa1292770:CDS | 20.0% |
| !!! | AATCAATTAGTTTTTTGACA+TGG | + | chr8_3:49333653-49333672 | None:intergenic | 20.0% |
| !! | ATGTCAAAAAACTAATTGAT+TGG | - | chr8_3:49333652-49333671 | Msa1292770:intron | 20.0% |
| !! | AACTTGAAAAACTCATTATA+TGG | + | chr8_3:49333728-49333747 | None:intergenic | 20.0% |
| !!! | ATCAACAAAATATTTTTCAG+CGG | + | chr8_3:49334085-49334104 | None:intergenic | 20.0% |
| !! | ATTCTTACACATATAATGTA+TGG | - | chr8_3:49334335-49334354 | Msa1292770:intron | 20.0% |
| !! | ATATGCAAAATTAAATATGC+TGG | - | chr8_3:49334789-49334808 | Msa1292770:intron | 20.0% |
| !!! | AAAAACTTGGGAAATATTTT+TGG | - | chr8_3:49334867-49334886 | Msa1292770:intron | 20.0% |
| ! | CTTAATCAGTTTATTAAGAG+TGG | - | chr8_3:49332188-49332207 | Msa1292770:CDS | 25.0% |
| ! | GAGTTGTAGTTTATGAATTA+TGG | - | chr8_3:49332699-49332718 | Msa1292770:CDS | 25.0% |
| ! | CATGTACACTTAACATATAA+GGG | - | chr8_3:49332785-49332804 | Msa1292770:CDS | 25.0% |
| !! | ACTAAGTTGAAAATAATCGA+TGG | - | chr8_3:49332908-49332927 | Msa1292770:CDS | 25.0% |
| !!! | GTTAATTTTTTTTTGGTGTG+TGG | - | chr8_3:49333342-49333361 | Msa1292770:intron | 25.0% |
| ! | ATGACTCTTTATACTAAAGT+AGG | - | chr8_3:49334253-49334272 | Msa1292770:intron | 25.0% |
| ! | TTCATTTCTTGAATGATAGA+CGG | + | chr8_3:49334295-49334314 | None:intergenic | 25.0% |
| ! | ACATTATATGTGTAAGAATC+CGG | + | chr8_3:49334334-49334353 | None:intergenic | 25.0% |
| ! | AGTTTCTAATTGCATTGTAT+GGG | - | chr8_3:49334563-49334582 | Msa1292770:intron | 25.0% |
| ! | CAAAGTATACGAAGTTTATA+GGG | - | chr8_3:49334594-49334613 | Msa1292770:intron | 25.0% |
| ! | AAAATTAAATATGCTGGAGA+AGG | - | chr8_3:49334795-49334814 | Msa1292770:intron | 25.0% |
| !!! | TATTTTTGGATTACCATTTG+CGG | - | chr8_3:49334881-49334900 | Msa1292770:intron | 25.0% |
| TACTTGAAACTCTTCAAAGA+CGG | - | chr8_3:49332137-49332156 | Msa1292770:CDS | 30.0% | |
| ATTATATCAACCTGCTCTTA+AGG | - | chr8_3:49332268-49332287 | Msa1292770:CDS | 30.0% | |
| TATGTTCTGTTTGGATAAAC+AGG | - | chr8_3:49332407-49332426 | Msa1292770:CDS | 30.0% | |
| TCAAATTAGCCAATCTAGAA+GGG | - | chr8_3:49332668-49332687 | Msa1292770:intron | 30.0% | |
| CATAAACTACAACTCACTAA+GGG | + | chr8_3:49332694-49332713 | None:intergenic | 30.0% | |
| TCATAAACTACAACTCACTA+AGG | + | chr8_3:49332695-49332714 | None:intergenic | 30.0% | |
| GAATGCTTATGATATGAACT+TGG | - | chr8_3:49332735-49332754 | Msa1292770:CDS | 30.0% | |
| GCATGTACACTTAACATATA+AGG | - | chr8_3:49332784-49332803 | Msa1292770:CDS | 30.0% | |
| !! | TAGTTGTAAGCTGTTTTCAT+CGG | - | chr8_3:49332865-49332884 | Msa1292770:CDS | 30.0% |
| AAGCATTTATGAGCATGTTT+GGG | + | chr8_3:49332963-49332982 | None:intergenic | 30.0% | |
| TAAGCATTTATGAGCATGTT+TGG | + | chr8_3:49332964-49332983 | None:intergenic | 30.0% | |
| ACTTAGAAACACGCAAATTT+GGG | + | chr8_3:49333141-49333160 | None:intergenic | 30.0% | |
| AACTTAGAAACACGCAAATT+TGG | + | chr8_3:49333142-49333161 | None:intergenic | 30.0% | |
| ! | ATGATATATTAGCTTGGGTT+TGG | - | chr8_3:49333203-49333222 | Msa1292770:CDS | 30.0% |
| ! | GTTTTTCTGCATAATTTAGC+AGG | - | chr8_3:49333313-49333332 | Msa1292770:intron | 30.0% |
| TAATATCCAAGCAGAACTAA+AGG | + | chr8_3:49333373-49333392 | None:intergenic | 30.0% | |
| TCTGCTTGGATATTAATATC+AGG | - | chr8_3:49333378-49333397 | Msa1292770:intron | 30.0% | |
| AGCAAAAAACCAATTGCAAA+AGG | + | chr8_3:49333421-49333440 | None:intergenic | 30.0% | |
| !!! | TTTGCAATTGGTTTTTTGCT+AGG | - | chr8_3:49333421-49333440 | Msa1292770:intron | 30.0% |
| !!! | TTGCAATTGGTTTTTTGCTA+GGG | - | chr8_3:49333422-49333441 | Msa1292770:intron | 30.0% |
| !!! | AGACTCTTGGTTATTTTTCT+TGG | - | chr8_3:49333555-49333574 | Msa1292770:intron | 30.0% |
| !!! | GACTCTTGGTTATTTTTCTT+GGG | - | chr8_3:49333556-49333575 | Msa1292770:intron | 30.0% |
| !!! | ACTCTTGGTTATTTTTCTTG+GGG | - | chr8_3:49333557-49333576 | Msa1292770:intron | 30.0% |
| CCAAATCAATATGTATAGCT+TGG | + | chr8_3:49334038-49334057 | None:intergenic | 30.0% | |
| ! | CCAAGCTATACATATTGATT+TGG | - | chr8_3:49334035-49334054 | Msa1292770:intron | 30.0% |
| GTCTATCATTCAAGAAATGA+AGG | - | chr8_3:49334294-49334313 | Msa1292770:intron | 30.0% | |
| TGCTGCAGTTAATGATATTT+CGG | - | chr8_3:49334369-49334388 | Msa1292770:intron | 30.0% | |
| CATACAATGCAATTAGAAAC+TGG | + | chr8_3:49334564-49334583 | None:intergenic | 30.0% | |
| CAGTTTCTAATTGCATTGTA+TGG | - | chr8_3:49334562-49334581 | Msa1292770:intron | 30.0% | |
| ATTGCATTGTATGGGAAAAT+AGG | - | chr8_3:49334571-49334590 | Msa1292770:intron | 30.0% | |
| GCAAAGTATACGAAGTTTAT+AGG | - | chr8_3:49334593-49334612 | Msa1292770:intron | 30.0% | |
| ! | TAGCTTATGTTTGCAGTTTT+AGG | + | chr8_3:49334646-49334665 | None:intergenic | 30.0% |
| AAGCTATCTGAATATGATTC+AGG | - | chr8_3:49334660-49334679 | Msa1292770:intron | 30.0% | |
| !! | TCTGAATATGATTCAGGTTT+TGG | - | chr8_3:49334666-49334685 | Msa1292770:intron | 30.0% |
| ! | GAGTTGCAAATGTATTGATA+GGG | - | chr8_3:49334764-49334783 | Msa1292770:intron | 30.0% |
| ! | AGTTGCAAATGTATTGATAG+GGG | - | chr8_3:49334765-49334784 | Msa1292770:intron | 30.0% |
| ! | ATTTCCCAAGTTTTTGCATT+AGG | + | chr8_3:49334862-49334881 | None:intergenic | 30.0% |
| TGGTAAGCGCGTTTATAAAT+GGG | - | chr8_3:49332208-49332227 | Msa1292770:CDS | 35.0% | |
| !! | CAGGTTGATATAATTTCCGT+TGG | + | chr8_3:49332262-49332281 | None:intergenic | 35.0% |
| TGCAAAAATACCTTAAGAGC+AGG | + | chr8_3:49332281-49332300 | None:intergenic | 35.0% | |
| !! | TGCATTTAATCGCTTTTCCT+AGG | - | chr8_3:49332297-49332316 | Msa1292770:CDS | 35.0% |
| GCTAATTTGAGCTTATCTAC+AGG | + | chr8_3:49332658-49332677 | None:intergenic | 35.0% | |
| CTCAAATTAGCCAATCTAGA+AGG | - | chr8_3:49332667-49332686 | Msa1292770:intron | 35.0% | |
| TGTTAGTGTCAACCTTTGTT+AGG | - | chr8_3:49333271-49333290 | Msa1292770:CDS | 35.0% | |
| GCTTGGATATTAATATCAGG+TGG | - | chr8_3:49333381-49333400 | Msa1292770:intron | 35.0% | |
| TGGATATTAATATCAGGTGG+TGG | - | chr8_3:49333384-49333403 | Msa1292770:intron | 35.0% | |
| GGATATTAATATCAGGTGGT+GGG | - | chr8_3:49333385-49333404 | Msa1292770:intron | 35.0% | |
| !!! | GTTTTGGTTCCTTTTGCAAT+TGG | - | chr8_3:49333409-49333428 | Msa1292770:intron | 35.0% |
| CTATCAAACCTCCTTAAAAC+AGG | + | chr8_3:49333482-49333501 | None:intergenic | 35.0% | |
| AAAATGGACAACCACAAAGA+GGG | + | chr8_3:49333507-49333526 | None:intergenic | 35.0% | |
| AAAAATGGACAACCACAAAG+AGG | + | chr8_3:49333508-49333527 | None:intergenic | 35.0% | |
| ! | TCTTTGTGGTTGTCCATTTT+TGG | - | chr8_3:49333507-49333526 | Msa1292770:intron | 35.0% |
| AAACCACAAAAGGCCAAAAA+TGG | + | chr8_3:49333523-49333542 | None:intergenic | 35.0% | |
| ! | TAGTCTTACGCCTTGTATTT+GGG | - | chr8_3:49333602-49333621 | Msa1292770:intron | 35.0% |
| AAATGACTCACCCAAATACA+AGG | + | chr8_3:49333615-49333634 | None:intergenic | 35.0% | |
| ! | TGTTGATGTTGTTGACTACA+TGG | - | chr8_3:49333850-49333869 | Msa1292770:intron | 35.0% |
| GGTCTTTATCATATTCCTCT+TGG | + | chr8_3:49334007-49334026 | None:intergenic | 35.0% | |
| ! | TTGATGACTGATAAAGCTGA+AGG | - | chr8_3:49334168-49334187 | Msa1292770:intron | 35.0% |
| !! | GGTGTCGTTGAAAAAAATGA+AGG | - | chr8_3:49334189-49334208 | Msa1292770:intron | 35.0% |
| ! | ATGATAGACGGAATCTTTTC+TGG | + | chr8_3:49334283-49334302 | None:intergenic | 35.0% |
| GCTGCAGTTAATGATATTTC+GGG | - | chr8_3:49334370-49334389 | Msa1292770:intron | 35.0% | |
| !! | ATGATATTTCGGGTGTTGAA+AGG | - | chr8_3:49334380-49334399 | Msa1292770:intron | 35.0% |
| !! | TGATATTTCGGGTGTTGAAA+GGG | - | chr8_3:49334381-49334400 | Msa1292770:intron | 35.0% |
| GGTTATTGATGAGATGAAGA+GGG | - | chr8_3:49334402-49334421 | Msa1292770:intron | 35.0% | |
| CATCAACATAAATAGACGCA+AGG | + | chr8_3:49334465-49334484 | None:intergenic | 35.0% | |
| !! | TGATGCTAACTTGTTTGAGA+TGG | - | chr8_3:49334480-49334499 | Msa1292770:intron | 35.0% |
| TATACGAAGTTTATAGGGTC+TGG | - | chr8_3:49334599-49334618 | Msa1292770:intron | 35.0% | |
| ! | CGAGTTGCAAATGTATTGAT+AGG | - | chr8_3:49334763-49334782 | Msa1292770:intron | 35.0% |
| CAAGCCTAATGCAAAAACTT+GGG | - | chr8_3:49334855-49334874 | Msa1292770:intron | 35.0% | |
| TAAAATCTGCATTCCGCAAA+TGG | + | chr8_3:49334897-49334916 | None:intergenic | 35.0% | |
| !!! | TGCAGATTTTAAGTTGGTTG+TGG | - | chr8_3:49334906-49334925 | Msa1292770:intron | 35.0% |
| ATACCTATTGTCTCAGATGA+TGG | + | chr8_3:49334985-49335004 | None:intergenic | 35.0% | |
| CGAAATCTTGAAGAAATCTG+TGG | - | chr8_3:49335059-49335078 | Msa1292770:CDS | 35.0% | |
| AAGAAATCTGTGGAATCTCT+AGG | - | chr8_3:49335069-49335088 | Msa1292770:CDS | 35.0% | |
| AGAAATCTGTGGAATCTCTA+GGG | - | chr8_3:49335070-49335089 | Msa1292770:CDS | 35.0% | |
| TATAGCCTCAAGCAACTTAT+GGG | + | chr8_3:49335202-49335221 | None:intergenic | 35.0% | |
| ATATAGCCTCAAGCAACTTA+TGG | + | chr8_3:49335203-49335222 | None:intergenic | 35.0% | |
| ATGTCTCTGATGCAACGTTA+CGG | - | chr8_3:49332062-49332081 | Msa1292770:CDS | 40.0% | |
| TTGAAACTCTTCAAAGACGG+TGG | - | chr8_3:49332140-49332159 | Msa1292770:CDS | 40.0% | |
| GTGGTAAGCGCGTTTATAAA+TGG | - | chr8_3:49332207-49332226 | Msa1292770:CDS | 40.0% | |
| CGCGTTTATAAATGGGAAGT+TGG | - | chr8_3:49332215-49332234 | Msa1292770:CDS | 40.0% | |
| GAATTATGGATGTAGACACG+TGG | - | chr8_3:49332713-49332732 | Msa1292770:CDS | 40.0% | |
| AAGTCAATCCAAAACCCACT+TGG | - | chr8_3:49333005-49333024 | Msa1292770:intron | 40.0% | |
| AGTCAATCCAAAACCCACTT+GGG | - | chr8_3:49333006-49333025 | Msa1292770:intron | 40.0% | |
| GTCTCAAGTTCGTTTCTCTT+CGG | - | chr8_3:49333077-49333096 | Msa1292770:intron | 40.0% | |
| ! | TTCTCTTCGGTGCACTAATT+TGG | - | chr8_3:49333090-49333109 | Msa1292770:intron | 40.0% |
| ! | ATATTAGCTTGGGTTTGGAG+TGG | - | chr8_3:49333208-49333227 | Msa1292770:CDS | 40.0% |
| ACCTTTGTTAGGTGAGGTAA+AGG | - | chr8_3:49333282-49333301 | Msa1292770:CDS | 40.0% | |
| ACCTTTACCTCACCTAACAA+AGG | + | chr8_3:49333286-49333305 | None:intergenic | 40.0% | |
| !! | GAATAGCCTTTAGTTCTGCT+TGG | - | chr8_3:49333364-49333383 | Msa1292770:intron | 40.0% |
| !!! | CAATTGGTTTTTTGCTAGGG+TGG | - | chr8_3:49333425-49333444 | Msa1292770:intron | 40.0% |
| GGATTGCTTAGTGTGGTTAT+AGG | - | chr8_3:49333446-49333465 | Msa1292770:intron | 40.0% | |
| TTGCTTAGTGTGGTTATAGG+TGG | - | chr8_3:49333449-49333468 | Msa1292770:intron | 40.0% | |
| ! | GTGGATTTGTGCCTGTTTTA+AGG | - | chr8_3:49333468-49333487 | Msa1292770:intron | 40.0% |
| !!! | GATTTGTGCCTGTTTTAAGG+AGG | - | chr8_3:49333471-49333490 | Msa1292770:intron | 40.0% |
| ! | GTTTGATAGTTCCCTCTTTG+TGG | - | chr8_3:49333493-49333512 | Msa1292770:intron | 40.0% |
| !!! | TGTCCATTTTTGGCCTTTTG+TGG | - | chr8_3:49333517-49333536 | Msa1292770:intron | 40.0% |
| ! | GCCTTTTGTGGTTTCTGATT+TGG | - | chr8_3:49333529-49333548 | Msa1292770:intron | 40.0% |
| GCCAAATCAGAAACCACAAA+AGG | + | chr8_3:49333533-49333552 | None:intergenic | 40.0% | |
| !! | TCTGATTTGGCTTAGACTCT+TGG | - | chr8_3:49333542-49333561 | Msa1292770:intron | 40.0% |
| !!! | TGGTTATTTTTCTTGGGGTC+TGG | - | chr8_3:49333562-49333581 | Msa1292770:intron | 40.0% |
| !!! | GTCTGGTAGTTTGGTTTTGT+GGG | - | chr8_3:49333579-49333598 | Msa1292770:intron | 40.0% |
| ! | GTAGTCTTACGCCTTGTATT+TGG | - | chr8_3:49333601-49333620 | Msa1292770:intron | 40.0% |
| GTTGCAGCTATCAGAAACAA+TGG | - | chr8_3:49333981-49334000 | Msa1292770:intron | 40.0% | |
| TATCAGAAACAATGGCCAAG+AGG | - | chr8_3:49333989-49334008 | Msa1292770:intron | 40.0% | |
| ATGTATAGCTTGGTCACTGA+CGG | + | chr8_3:49334028-49334047 | None:intergenic | 40.0% | |
| ! | GATGATTTTTCGCAGACTCA+GGG | + | chr8_3:49334110-49334129 | None:intergenic | 40.0% |
| ! | AGATGATTTTTCGCAGACTC+AGG | + | chr8_3:49334111-49334130 | None:intergenic | 40.0% |
| TGAAGGATCTTGACTTTCCT+TGG | - | chr8_3:49334206-49334225 | Msa1292770:intron | 40.0% | |
| TTGTAAGACAGTGAACTCCA+AGG | + | chr8_3:49334226-49334245 | None:intergenic | 40.0% | |
| GGGTTATTGATGAGATGAAG+AGG | - | chr8_3:49334401-49334420 | Msa1292770:intron | 40.0% | |
| ATTGATGAGATGAAGAGGGA+TGG | - | chr8_3:49334406-49334425 | Msa1292770:intron | 40.0% | |
| !! | TGCTAACTTGTTTGAGATGG+CGG | - | chr8_3:49334483-49334502 | Msa1292770:intron | 40.0% |
| ! | GGAAAGTGCACTTAAGGAAT+TGG | - | chr8_3:49334504-49334523 | Msa1292770:intron | 40.0% |
| CACTTAAGGAATTGGAGAAG+AGG | - | chr8_3:49334512-49334531 | Msa1292770:intron | 40.0% | |
| AAGGAATTGGAGAAGAGGAA+TGG | - | chr8_3:49334517-49334536 | Msa1292770:intron | 40.0% | |
| ! | GTTAACTTGAAAGATCTCCC+AGG | - | chr8_3:49334688-49334707 | Msa1292770:intron | 40.0% |
| !! | AGAAAAGTGTTTCCGTGAGT+GGG | - | chr8_3:49334714-49334733 | Msa1292770:intron | 40.0% |
| GGAGAAGGCTGAAGAAATAA+AGG | - | chr8_3:49334810-49334829 | Msa1292770:intron | 40.0% | |
| ! | CCAAGTTTTTGCATTAGGCT+TGG | + | chr8_3:49334857-49334876 | None:intergenic | 40.0% |
| CCAAGCCTAATGCAAAAACT+TGG | - | chr8_3:49334854-49334873 | Msa1292770:intron | 40.0% | |
| !! | GCGGAATGCAGATTTTAAGT+TGG | - | chr8_3:49334900-49334919 | Msa1292770:intron | 40.0% |
| TTATCCGAGGCAATCTCAAT+TGG | - | chr8_3:49334934-49334953 | Msa1292770:intron | 40.0% | |
| ! | GTTCCATCATCTGAGACAAT+AGG | - | chr8_3:49334979-49334998 | Msa1292770:intron | 40.0% |
| GAAATCTGTGGAATCTCTAG+GGG | - | chr8_3:49335071-49335090 | Msa1292770:CDS | 40.0% | |
| ATTAGAACTTATGCAGCTGC+TGG | - | chr8_3:49335114-49335133 | Msa1292770:CDS | 40.0% | |
| TATGCAACGACGATTGAAGA+TGG | - | chr8_3:49335152-49335171 | Msa1292770:CDS | 40.0% | |
| ! | CGCTTCGTCTAAGTGCTTTT+TGG | + | chr8_3:49332114-49332133 | None:intergenic | 45.0% |
| AACGAACTTGAGACCTTGAG+AGG | + | chr8_3:49333071-49333090 | None:intergenic | 45.0% | |
| GTGTCAACCTTTGTTAGGTG+AGG | - | chr8_3:49333276-49333295 | Msa1292770:CDS | 45.0% | |
| !!! | ATATCAGGTGGTGGGTGTTT+TGG | - | chr8_3:49333393-49333412 | Msa1292770:intron | 45.0% |
| TTTCTTGGGGTCTGGTAGTT+TGG | - | chr8_3:49333570-49333589 | Msa1292770:intron | 45.0% | |
| !!! | GGTCTGGTAGTTTGGTTTTG+TGG | - | chr8_3:49333578-49333597 | Msa1292770:intron | 45.0% |
| ! | TCTCTAAATCTAGAGCTGCC+TGG | + | chr8_3:49333893-49333912 | None:intergenic | 45.0% |
| GATTTGGCTGCAAAAGCTAG+AGG | - | chr8_3:49334051-49334070 | Msa1292770:intron | 45.0% | |
| ACTTCTCAACTGCTACTGCA+AGG | - | chr8_3:49334143-49334162 | Msa1292770:intron | 45.0% | |
| GAAGGCTAGCAATATCATGC+CGG | - | chr8_3:49334312-49334331 | Msa1292770:intron | 45.0% | |
| ATGGTCGAGTCACTAGAGAT+TGG | - | chr8_3:49334425-49334444 | Msa1292770:intron | 45.0% | |
| ! | GGAAACACTTTTCTGCTCCT+GGG | + | chr8_3:49334708-49334727 | None:intergenic | 45.0% |
| !! | CAGAAAAGTGTTTCCGTGAG+TGG | - | chr8_3:49334713-49334732 | Msa1292770:intron | 45.0% |
| ! | AAATAAAGGAGCGTGCTCGA+AGG | - | chr8_3:49334824-49334843 | Msa1292770:intron | 45.0% |
| ! | GGTTGTGGATTGTTTATCCG+AGG | - | chr8_3:49334921-49334940 | Msa1292770:intron | 45.0% |
| TCTGCCAATTGAGATTGCCT+CGG | + | chr8_3:49334941-49334960 | None:intergenic | 45.0% | |
| AGGCAATCTCAATTGGCAGA+GGG | - | chr8_3:49334941-49334960 | Msa1292770:intron | 45.0% | |
| ATCTCAATTGGCAGAGGGAA+TGG | - | chr8_3:49334946-49334965 | Msa1292770:intron | 45.0% | |
| CAGAGGGAATGGTGAAAAGT+GGG | - | chr8_3:49334957-49334976 | Msa1292770:intron | 45.0% | |
| GAGCAAGAGAAGGATGTTGA+TGG | - | chr8_3:49335021-49335040 | Msa1292770:CDS | 45.0% | |
| AGATGCCCATAAGTTGCTTG+AGG | - | chr8_3:49335194-49335213 | Msa1292770:CDS | 45.0% | |
| CGCTTAAGAAGCTTCGCCAA+CGG | - | chr8_3:49332243-49332262 | Msa1292770:CDS | 50.0% | |
| CACTAAGGGCCCTTCTAGAT+TGG | + | chr8_3:49332680-49332699 | None:intergenic | 50.0% | |
| !! | AGGCTAACCCAAGTGGGTTT+TGG | + | chr8_3:49333016-49333035 | None:intergenic | 50.0% |
| !! | AAAACCCACTTGGGTTAGCC+TGG | - | chr8_3:49333015-49333034 | Msa1292770:intron | 50.0% |
| !! | CTAGGGTGGATTGCTTAGTG+TGG | - | chr8_3:49333439-49333458 | Msa1292770:intron | 50.0% |
| GTTGACTACATGGTCGTGTC+TGG | - | chr8_3:49333860-49333879 | Msa1292770:intron | 50.0% | |
| ! | GTCGTGTCTGGAACAAAACC+AGG | - | chr8_3:49333872-49333891 | Msa1292770:intron | 50.0% |
| !! | GATGGCGGAAAGTGCACTTA+AGG | - | chr8_3:49334498-49334517 | Msa1292770:intron | 50.0% |
| ATAGGGTCTGGCGTTCTCTT+AGG | - | chr8_3:49334611-49334630 | Msa1292770:intron | 50.0% | |
| ! | CGGAAACACTTTTCTGCTCC+TGG | + | chr8_3:49334709-49334728 | None:intergenic | 50.0% |
| TGCAGCTTGATTCCCACTCA+CGG | + | chr8_3:49334729-49334748 | None:intergenic | 50.0% | |
| GAGGCAATCTCAATTGGCAG+AGG | - | chr8_3:49334940-49334959 | Msa1292770:intron | 50.0% | |
| GCAGAGGGAATGGTGAAAAG+TGG | - | chr8_3:49334956-49334975 | Msa1292770:intron | 50.0% | |
| ! | GAAGCACTACGAGCAAGAGA+AGG | - | chr8_3:49335011-49335030 | Msa1292770:CDS | 50.0% |
| ! | TGTGGAATCTCTAGGGGAAG+AGG | - | chr8_3:49335077-49335096 | Msa1292770:CDS | 50.0% |
| GAACTTATGCAGCTGCTGGT+AGG | - | chr8_3:49335118-49335137 | Msa1292770:CDS | 50.0% | |
| GTTGCTTGAGGCTATATCCG+AGG | - | chr8_3:49335206-49335225 | Msa1292770:CDS | 50.0% | |
| ACCACCAGGCTAACCCAAGT+GGG | + | chr8_3:49333022-49333041 | None:intergenic | 55.0% | |
| !! | TTGGGTTAGCCTGGTGGTGT+GGG | - | chr8_3:49333024-49333043 | Msa1292770:intron | 55.0% |
| ! | TGGTGTGGGCTTGGTACCTT+GGG | - | chr8_3:49333038-49333057 | Msa1292770:intron | 55.0% |
| GGTCTGGCGTTCTCTTAGGT+AGG | - | chr8_3:49334615-49334634 | Msa1292770:intron | 55.0% | |
| ! | TAAAGGAGCGTGCTCGAAGG+AGG | - | chr8_3:49334827-49334846 | Msa1292770:intron | 55.0% |
| ! | AAAGGAGCGTGCTCGAAGGA+GGG | - | chr8_3:49334828-49334847 | Msa1292770:intron | 55.0% |
| !! | ACCCACTTGGGTTAGCCTGG+TGG | - | chr8_3:49333018-49333037 | Msa1292770:intron | 60.0% |
| CACCACCAGGCTAACCCAAG+TGG | + | chr8_3:49333023-49333042 | None:intergenic | 60.0% | |
| !! | CTTGGGTTAGCCTGGTGGTG+TGG | - | chr8_3:49333023-49333042 | Msa1292770:intron | 60.0% |
| ! | TTAGCCTGGTGGTGTGGGCT+TGG | - | chr8_3:49333029-49333048 | Msa1292770:intron | 60.0% |
| ! | GTGGTGTGGGCTTGGTACCT+TGG | - | chr8_3:49333037-49333056 | Msa1292770:intron | 60.0% |
| ! | GGTGTGGGCTTGGTACCTTG+GGG | - | chr8_3:49333039-49333058 | Msa1292770:intron | 60.0% |
| ! | CTTGAGAGGAGCACACCCCA+AGG | + | chr8_3:49333057-49333076 | None:intergenic | 60.0% |
| CTTGGGGTGTGCTCCTCTCA+AGG | - | chr8_3:49333055-49333074 | Msa1292770:intron | 60.0% | |
| ! | AAGGAGCGTGCTCGAAGGAG+GGG | - | chr8_3:49334829-49334848 | Msa1292770:intron | 60.0% |
| GGTACCAAGCCCACACCACC+AGG | + | chr8_3:49333036-49333055 | None:intergenic | 65.0% | |
| ! | AGGAGCGTGCTCGAAGGAGG+GGG | - | chr8_3:49334830-49334849 | Msa1292770:intron | 65.0% |
| GGAGCGTGCTCGAAGGAGGG+GGG | - | chr8_3:49334831-49334850 | Msa1292770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 49332062 | 49335233 | 49332062 | ID=Msa1292770;Name=Msa1292770 |
| chr8_3 | mRNA | 49332062 | 49335233 | 49332062 | ID=Msa1292770-mRNA-1;Parent=Msa1292770;Name=Msa1292770-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|4|0|434 |
| chr8_3 | exon | 49335006 | 49335233 | 49335006 | ID=Msa1292770-mRNA-1:exon:13701;Parent=Msa1292770-mRNA-1 |
| chr8_3 | exon | 49333106 | 49333307 | 49333106 | ID=Msa1292770-mRNA-1:exon:13700;Parent=Msa1292770-mRNA-1 |
| chr8_3 | exon | 49332698 | 49333020 | 49332698 | ID=Msa1292770-mRNA-1:exon:13699;Parent=Msa1292770-mRNA-1 |
| chr8_3 | exon | 49332062 | 49332613 | 49332062 | ID=Msa1292770-mRNA-1:exon:13698;Parent=Msa1292770-mRNA-1 |
| chr8_3 | CDS | 49335006 | 49335233 | 49335006 | ID=Msa1292770-mRNA-1:cds;Parent=Msa1292770-mRNA-1 |
| chr8_3 | CDS | 49333106 | 49333307 | 49333106 | ID=Msa1292770-mRNA-1:cds;Parent=Msa1292770-mRNA-1 |
| chr8_3 | CDS | 49332698 | 49333020 | 49332698 | ID=Msa1292770-mRNA-1:cds;Parent=Msa1292770-mRNA-1 |
| chr8_3 | CDS | 49332062 | 49332613 | 49332062 | ID=Msa1292770-mRNA-1:cds;Parent=Msa1292770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
