AlfalfaGEDB | Msa0196630

M. sativa cultivar zhongmu-4 / Msa0196630

KEGG: K00703
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0010021 GO:0042802 GO:0043170 GO:0071704 GO:1901135 GO:1901137 GO:1901576 GO:2000896
PFAM: PF16760.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196630	XP_013462828.1	93.310	1121	36	2	1	1096	3	1109	0.0	2113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196630	sp\|Q43846\|SSY3_SOLTU	66.818	1100	305	10	31	1096	157	1230	0.0	1504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196630	A0A072V4Z9	93.310	1121	36	2	1	1096	3	1109	0.0	2113

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0196630	0.814434	1.543819e-51	-8.615850e-47
Msa0005690	Msa0196630	0.831498	1.613376e-55	-8.615850e-47
Msa0008250	Msa0196630	0.804594	2.004270e-49	-8.615850e-47
Msa0027030	Msa0196630	0.804959	1.681897e-49	-8.615850e-47
Msa0040780	Msa0196630	0.816763	4.676627e-52	-8.615850e-47
Msa0053960	Msa0196630	0.810578	1.075159e-50	-8.615850e-47
Msa0072830	Msa0196630	0.812138	4.929043e-51	-8.615850e-47
Msa0072860	Msa0196630	0.809474	1.858787e-50	-8.615850e-47
Msa0080810	Msa0196630	0.836034	1.185649e-56	-8.615850e-47
Msa0083550	Msa0196630	0.813496	2.485770e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196630	MtrunA17_Chr2g0288461	93.310	1121	36	2	1	1096	3	1109	0.0	2113
Msa0196630	MtrunA17_Chr4g0051911	46.521	503	225	10	622	1089	473	966	3.54e-131	423
Msa0196630	MtrunA17_Chr8g0376341	99.200	125	1	0	595	719	1	125	4.82e-82	263
Msa0196630	MtrunA17_Chr6g0453261	30.426	516	279	16	631	1093	267	755	1.22e-51	195
Msa0196630	MtrunA17_Chr3g0126911	31.395	516	282	19	632	1088	142	644	2.31e-50	189
Msa0196630	MtrunA17_Chr5g0411441	27.273	506	291	16	622	1079	182	658	9.59e-48	182
Msa0196630	MtrunA17_Chr8g0345941	33.250	400	206	13	734	1088	204	587	6.12e-47	179
Msa0196630	MtrunA17_Chr1g0189131	31.726	394	208	14	734	1082	196	573	1.55e-39	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0196630	AT1G11720.2	64.203	1123	311	12	8	1094	27	1094	0.0	1449
Msa0196630	AT1G11720.1	65.261	1091	288	12	40	1094	7	1042	0.0	1442
Msa0196630	AT4G18240.1	46.365	509	226	12	619	1089	527	1026	4.97e-130	422
Msa0196630	AT3G01180.1	31.456	515	289	14	627	1093	291	789	6.39e-57	212
Msa0196630	AT5G24300.2	30.724	511	291	17	632	1090	143	642	1.99e-47	181
Msa0196630	AT5G24300.1	30.724	511	291	17	632	1090	143	642	1.99e-47	181
Msa0196630	AT1G32900.1	30.153	524	278	19	623	1082	76	575	6.05e-44	170
Msa0196630	AT5G65685.4	34.286	175	108	3	627	794	109	283	8.71e-27	114
Msa0196630	AT5G65685.8	34.286	175	108	3	627	794	109	283	8.71e-27	114
Msa0196630	AT5G65685.9	34.286	175	108	3	627	794	109	283	8.71e-27	114

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Find 262 sgRNAs with CRISPR-Local

Find 813 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGAGAATGTTGAT+TGG	0.507717	2_1:-13963980	None:intergenic
AAACAGATCTCAAGGATAAT+TGG	0.282475	2_1:+13965094	Msa0196630:CDS
AAACCTGAAGTTTGGTTTAG+AGG	0.309834	2_1:+13967675	Msa0196630:CDS
AAAGACAGGCTGAAGAGGAA+AGG	0.552964	2_1:+13965322	Msa0196630:CDS
AAAGAGCAGTATACACATTA+TGG	0.322395	2_1:+13972868	Msa0196630:CDS
AAAGAGGTTCATCATATGAA+AGG	0.558100	2_1:-13974689	None:intergenic
AAAGATAAGGAGCAATTGCG+GGG	0.658046	2_1:-13973141	None:intergenic
AAAGGAAGAGGATAGGTTGC+AGG	0.434174	2_1:+13965368	Msa0196630:CDS
AAAGTGCAAAGAAATGTCCA+TGG	0.637085	2_1:-13964156	None:intergenic
AACAACGTTGTTGTGTTGTG+TGG	0.627141	2_1:-13964037	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTGTTTCAATCAAACCA+TGG	+	chr2_1:13964139-13964158	Msa0196630:exon	30.0%
TCTTGTATTAATGCTAGTTC+AGG	+	chr2_1:13964260-13964279	Msa0196630:CDS	30.0%
AGGAAAAGACAACAAAAGAA+AGG	+	chr2_1:13964445-13964464	Msa0196630:CDS	30.0%
TTCCTCGTTTATTCTATCAT+CGG	-	chr2_1:13964830-13964849	None:intergenic	30.0%
AACACTTCTATATCTTGATC+AGG	-	chr2_1:13964973-13964992	None:intergenic	30.0%
AAACAGATCTCAAGGATAAT+TGG	+	chr2_1:13965094-13965113	Msa0196630:CDS	30.0%
TTAGACTTTGTGTTCTTCAA+TGG	+	chr2_1:13965156-13965175	Msa0196630:CDS	30.0%
CTGGTATACAAAAATCTTTC+TGG	-	chr2_1:13965206-13965225	None:intergenic	30.0%
TTGAACATGCTAAGGAAATA+TGG	+	chr2_1:13965541-13965560	Msa0196630:CDS	30.0%
GTCTAAACATTAAAAGGTTG+CGG	+	chr2_1:13965844-13965863	Msa0196630:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	13963785	13975993	13963785	ID=Msa0196630;Name=Msa0196630
chr2_1	mRNA	13963785	13975993	13963785	ID=Msa0196630-mRNA-1;Parent=Msa0196630;Name=Msa0196630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=373\|0.85\|0.86\|1\|1\|1\|15\|506\|1096
chr2_1	exon	13963785	13964281	13963785	ID=Msa0196630-mRNA-1:exon:5996;Parent=Msa0196630-mRNA-1
chr2_1	exon	13964437	13965660	13964437	ID=Msa0196630-mRNA-1:exon:5997;Parent=Msa0196630-mRNA-1
chr2_1	exon	13966244	13966383	13966244	ID=Msa0196630-mRNA-1:exon:5998;Parent=Msa0196630-mRNA-1
chr2_1	exon	13967516	13967786	13967516	ID=Msa0196630-mRNA-1:exon:5999;Parent=Msa0196630-mRNA-1
chr2_1	exon	13968327	13968502	13968327	ID=Msa0196630-mRNA-1:exon:6000;Parent=Msa0196630-mRNA-1
chr2_1	exon	13970056	13970163	13970056	ID=Msa0196630-mRNA-1:exon:6001;Parent=Msa0196630-mRNA-1
chr2_1	exon	13970581	13970690	13970581	ID=Msa0196630-mRNA-1:exon:6002;Parent=Msa0196630-mRNA-1
chr2_1	exon	13971411	13971516	13971411	ID=Msa0196630-mRNA-1:exon:6003;Parent=Msa0196630-mRNA-1
chr2_1	exon	13972817	13973029	13972817	ID=Msa0196630-mRNA-1:exon:6004;Parent=Msa0196630-mRNA-1
chr2_1	exon	13973106	13973234	13973106	ID=Msa0196630-mRNA-1:exon:6005;Parent=Msa0196630-mRNA-1
chr2_1	exon	13973776	13973958	13973776	ID=Msa0196630-mRNA-1:exon:6006;Parent=Msa0196630-mRNA-1
chr2_1	exon	13974585	13974719	13974585	ID=Msa0196630-mRNA-1:exon:6007;Parent=Msa0196630-mRNA-1
chr2_1	exon	13974820	13974931	13974820	ID=Msa0196630-mRNA-1:exon:6008;Parent=Msa0196630-mRNA-1
chr2_1	exon	13975061	13975184	13975061	ID=Msa0196630-mRNA-1:exon:6009;Parent=Msa0196630-mRNA-1
chr2_1	exon	13975352	13975993	13975352	ID=Msa0196630-mRNA-1:exon:6010;Parent=Msa0196630-mRNA-1
chr2_1	five_prime_UTR	13963785	13964157	13963785	ID=Msa0196630-mRNA-1:five_prime_utr;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13964158	13964281	13964158	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13964437	13965660	13964437	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13966244	13966383	13966244	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13967516	13967786	13967516	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13968327	13968502	13968327	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13970056	13970163	13970056	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13970581	13970690	13970581	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13971411	13971516	13971411	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13972817	13973029	13972817	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13973106	13973234	13973106	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13973776	13973958	13973776	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13974585	13974719	13974585	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13974820	13974931	13974820	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13975061	13975184	13975061	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	CDS	13975352	13975487	13975352	ID=Msa0196630-mRNA-1:cds;Parent=Msa0196630-mRNA-1
chr2_1	three_prime_UTR	13975488	13975993	13975488	ID=Msa0196630-mRNA-1:three_prime_utr;Parent=Msa0196630-mRNA-1

Gene Sequence

>Msa0196630

ATGGACATTTCTTTGCACTTTACCTACAAAACTGTGTTCCCCAACAGAACCGGTTGTTTCAACCTTACCCCATCTTCATGGTGCAAACCAAGTACAAGACTTTCTTGTATTAATGCTAGTTCAGATTTTTCTAGGAAAAGACAACAAAAGAAAGGTTCAGTTGCTAAGTCAAAGGGGTCTTCTCCAAAGGGTTTTGTTCCAAAATCATCTATTGGATCAAGTAGTAAGAAAAATGCTAGAATCAAAAAGGGAGAACAAACAGTTGATGTTAATGTTGATGATGATAAAGACGGAGAAGTTGAGTTTTCCCTTGAGGAAAAACATGTGATTGTCGATAAAACTAATGAAATTGCTCAGGAGTTTGGCCAAACGTCTTTGACAGATGAGACATTGGATGTTGTTGAGAGTAATCGGGGCGAAGAGGATGTTGATGATGATCAACTACATCAGGAGGGAACTTCTTACATTGGAGATGATGGGTATGTTAAAGATTCCGAGGAAGCAAGTGCTGCTACCGATGATAGAATAAACGAGGAAGCTTCTAGGATGTTGAAGTTGAAGTTGGAAGAAAATTTGCGAAAGCAGGAAATAGAGAGGATTGCAGACAAAAACTTTTTGCGAGGGAAACAGATGTTTGTATATCCTCCTGTGGTTAAACCTGATCAAGATATAGAAGTGTTTCTTAACAAGAACCTTTCAACACTGAGAGATGAAGAAGACATTTTGATATTAGGGGCATTTAATGATTGGAGGTGGAAATCTTTTACCATCAGATTGAATAAAACAGATCTCAAGGATAATTGGTGGAGTTGCCAACTGTATGTGCCTATAGAAGCCTATAAATTAGACTTTGTGTTCTTCAATGGACAAAGTGTTTATGACAATAATGACCAGAAAGATTTTTGTATACCAGTTGATGGTGGAATGGACGCATTGGCATTTGAAGAATTTTTGCTTGAGGAGAAACGTAAAGAATTAGAAAAACTTGCTAAGGAGCAAGCTGAAAGGGAAAGACAGGCTGAAGAGGAAAGGCGAATAGAAGCAGACAAAGCTGCAAAGGAAGAGGATAGGTTGCAGGCAAGGTTGGAGGTTGAAAGAAGGCAAGAAACAGTGCTGCAGTTGATGAAAAATGCCGTAAAATCTAATGATAGTGTTTGGTATATTGAACCTAGTGAATTTAAAGGCAAGGACTTGGTCAGACTATATTATAATGGAAGCTCAGGTCCTCTTGAACATGCTAAGGAAATATGGATTCATGGTGGCTACAACAATTGGAAGGATGGATTATCAATTGTTGAAAGGCTTGTCAAATCTGTTTTGAAAGGCGGTCCTTGGTGGTATGCTGATGTTGTTGTACCTGACCAAGCTCTTGTCCTGGATTGGGTCTTTGCTGATGGTCCACCTCAAAATGCAGTTGTGTATGATAACAACCATAAGCTAGATTTCCATGCCATTGTCCCTTTGGCTACACCTGACGCACAATATTGGGCTGAAAAAACAGCACGAATGAAAGCCGAAACAAAGGAAAAAACGTTGAAAGCATTTTTGCTATCTCAAAAGCACATCGTCTTCACTGAGCCTCTTGATATTCAAGCAGGGAGTACAGTGACAGTGTTTTATAACCCCTCAAATACAAATCTGAATGGCAAACCTGAAGTTTGGTTTAGAGGCTCATTTAATCGTTGGTCTCATCGTAATGGTCCATTGCCACCTCAGAGAATGTTGCCTGCAGAGAATGGCACACACGTCAAAACATCAGTTAAAGTTCCACTGGATGCATACATGATGGACTTTGTATTCTCTGAAAGTGAAAATGGTGGAGTTTTTGATAACAAATTTGGAATGGATTACCACATACCTGTTTTTGGAAGCATTGTGAAGGAACCTCCTTTGCATATCATTCATATTGCTGTTGAAATGGCCCCAATTGCAAAGGTTGGAGGCCTTGGTGATGTTGTTACTAGTCTATCCCGAGCAGTTCAAGATTTAAATCACAATGTGGATATCATTCTTCCTAAGTATGACTGCTTGAACCTTAGCAATGTAAAGGACTTTCAATTTCACAAAAGCTATTTTTGGAGTGGGACTGAAATAAAAGTGTGGCACGGAAAGGTCGAAGGCCTCTCTGTCTACTTTTTGGAGCCTCAGAATGGATTCTTTTGGGTTGGCTGTGTATATGGTCGTGCGAATGATGCAGAGAGATTTGGTTTCTTTTGTCACGCCGCTCTCGAATTCCTACTTCAAAATGGATTTAATCCTGATATCATTCACTGCCATGACTGGTCAAGCGCTCCAGTTGCATGGCTATTTAAAGAGCAGTATACACATTATGGTCTTAGTAAGGCTCGAGCAGTCTTCACAATTCATAACCTTGAATTTGGAGCCCCTTTAATTGCTAGAGCTATGGCATTTGCAGACAAGGCTACAACTGTAAGTGCTGCTTATGTTAAACTGCAATTTGAAAAGAAGCAAGTTTCCCCTACTTATTCAAGGGAGGTTGCCGGGAACCCCGCAATTGCTCCTTATCTTTACAAGTTTCATGGTATAATAAACGGAATCGACCCAGATATATGGGACCCATATAACGATAACTTCATTCCTGTACCATACACTTCAGAAAATGTTGTTGAAGGAAAAAGAGCTTCCAAGGAAGCCTTGCAACGAAAGCTTGGTTTAAAAACAGCCGATCTTCCTTTAGTGGGAGTTATTACTCGATTGACTCATCAAAAAGGGATCCATCTCATTAAACATGCCATATGGCGTACTCTTGAACGTGGTGGACAGGTTGTATTACTTGGTTCAGCTCCTGATCCCCGCATCCAAAATGATTTTGTGCATTTGGCCAATCAATTGCACTCCTCTCATTATTGTGATAGGGCAAGACTTTGCCTTTCATATGATGAACCTCTTTCCCACTTGATATATGCTGGTGCCGATTTCATTCTTGTTCCTTCAATCTTTGAGCCATGTGGACTCACTCAACTCACAGCAATGAGATATGGTTCAATACCTATTGTTCGAAAAACTGGAGGACTTTATGATACGGTGTTTGACGTTGATCATGATAAGGATAGAGCGCAATCTCAAGGTGTTGAGCCAAATGGATTCAGTTTTGATGGAGCTGATGCAGGAGGTGTTGATTATGCTCTTAATAGGGCAATATCTGCATGGTATGATGGCCGTGAGTGGTTCAACACATTATGCAAGACGGTAATGGAGCAAGACTGGTCTTGGAACCGGCCTGCTCTCGACTATTTGGAGCTTTACCATGCAGCACGCAAGTTGGAATGA

Protein sequence

>Msa0196630

MDISLHFTYKTVFPNRTGCFNLTPSSWCKPSTRLSCINASSDFSRKRQQKKGSVAKSKGSSPKGFVPKSSIGSSSKKNARIKKGEQTVDVNVDDDKDGEVEFSLEEKHVIVDKTNEIAQEFGQTSLTDETLDVVESNRGEEDVDDDQLHQEGTSYIGDDGYVKDSEEASAATDDRINEEASRMLKLKLEENLRKQEIERIADKNFLRGKQMFVYPPVVKPDQDIEVFLNKNLSTLRDEEDILILGAFNDWRWKSFTIRLNKTDLKDNWWSCQLYVPIEAYKLDFVFFNGQSVYDNNDQKDFCIPVDGGMDALAFEEFLLEEKRKELEKLAKEQAERERQAEEERRIEADKAAKEEDRLQARLEVERRQETVLQLMKNAVKSNDSVWYIEPSEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGYNNWKDGLSIVERLVKSVLKGGPWWYADVVVPDQALVLDWVFADGPPQNAVVYDNNHKLDFHAIVPLATPDAQYWAEKTARMKAETKEKTLKAFLLSQKHIVFTEPLDIQAGSTVTVFYNPSNTNLNGKPEVWFRGSFNRWSHRNGPLPPQRMLPAENGTHVKTSVKVPLDAYMMDFVFSESENGGVFDNKFGMDYHIPVFGSIVKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNVKDFQFHKSYFWSGTEIKVWHGKVEGLSVYFLEPQNGFFWVGCVYGRANDAERFGFFCHAALEFLLQNGFNPDIIHCHDWSSAPVAWLFKEQYTHYGLSKARAVFTIHNLEFGAPLIARAMAFADKATTVSAAYVKLQFEKKQVSPTYSREVAGNPAIAPYLYKFHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRASKEALQRKLGLKTADLPLVGVITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVHLANQLHSSHYCDRARLCLSYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDHDKDRAQSQGVEPNGFSFDGADAGGVDYALNRAISAWYDGREWFNTLCKTVMEQDWSWNRPALDYLELYHAARKLE*