Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361500 | XP_003610095.1 | 95.930 | 172 | 7 | 0 | 1 | 172 | 1 | 172 | 1.93e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361500 | sp|O64416|RBS_MARPA | 63.971 | 136 | 48 | 1 | 34 | 168 | 44 | 179 | 3.33e-67 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361500 | G7JVD3 | 95.930 | 172 | 7 | 0 | 1 | 172 | 1 | 172 | 9.23e-123 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036580 | Msa1361500 | 0.801380 | 9.251887e-49 | -8.615850e-47 |
| Msa0048950 | Msa1361500 | 0.811849 | 5.698861e-51 | -8.615850e-47 |
| Msa0059880 | Msa1361500 | 0.825022 | 5.877734e-54 | -8.615850e-47 |
| Msa0096860 | Msa1361500 | 0.806596 | 7.617595e-50 | -8.615850e-47 |
| Msa1357720 | Msa1361500 | -0.838321 | 3.083328e-57 | -8.615850e-47 |
| Msa1360380 | Msa1361500 | -0.816632 | 5.003304e-52 | -8.615850e-47 |
| Msa1361500 | Msa1373560 | 0.808481 | 3.032578e-50 | -8.615850e-47 |
| Msa1361500 | Msa1395690 | 0.803161 | 3.978826e-49 | -8.615850e-47 |
| Msa1361500 | Msa1415120 | -0.802261 | 6.101058e-49 | -8.615850e-47 |
| Msa1361500 | Msa1448150 | 0.801649 | 8.150035e-49 | -8.615850e-47 |
| Msa1361500 | Msa1452200 | -0.819639 | 1.045007e-52 | -8.615850e-47 |
| Msa0630130 | Msa1361500 | 0.816167 | 6.358986e-52 | -8.615850e-47 |
| Msa0640290 | Msa1361500 | 0.803573 | 3.268737e-49 | -8.615850e-47 |
| Msa0648170 | Msa1361500 | -0.800690 | 1.280135e-48 | -8.615850e-47 |
| Msa0670360 | Msa1361500 | 0.804920 | 1.713579e-49 | -8.615850e-47 |
| Msa0709820 | Msa1361500 | 0.801867 | 7.352426e-49 | -8.615850e-47 |
| Msa0711230 | Msa1361500 | 0.812242 | 4.677780e-51 | -8.615850e-47 |
| Msa0711240 | Msa1361500 | 0.829470 | 5.056128e-55 | -8.615850e-47 |
| Msa0727480 | Msa1361500 | 0.804582 | 2.015784e-49 | -8.615850e-47 |
| Msa0731740 | Msa1361500 | -0.810306 | 1.231037e-50 | -8.615850e-47 |
| Msa0756570 | Msa1361500 | 0.815545 | 8.750816e-52 | -8.615850e-47 |
| Msa0772040 | Msa1361500 | -0.814551 | 1.454077e-51 | -8.615850e-47 |
| Msa0782030 | Msa1361500 | -0.820063 | 8.358649e-53 | -8.615850e-47 |
| Msa0129270 | Msa1361500 | 0.807126 | 5.886965e-50 | -8.615850e-47 |
| Msa0139270 | Msa1361500 | 0.801188 | 1.013185e-48 | -8.615850e-47 |
| Msa0150910 | Msa1361500 | 0.806093 | 9.722361e-50 | -8.615850e-47 |
| Msa0154750 | Msa1361500 | 0.800916 | 1.151360e-48 | -8.615850e-47 |
| Msa0176620 | Msa1361500 | 0.801135 | 1.038755e-48 | -8.615850e-47 |
| Msa0177550 | Msa1361500 | 0.805444 | 1.331093e-49 | -8.615850e-47 |
| Msa0218480 | Msa1361500 | -0.812618 | 3.873098e-51 | -8.615850e-47 |
| Msa0218590 | Msa1361500 | -0.815942 | 7.136300e-52 | -8.615850e-47 |
| Msa1263000 | Msa1361500 | 0.852128 | 5.655031e-61 | -8.615850e-47 |
| Msa1265500 | Msa1361500 | 0.848201 | 7.126988e-60 | -8.615850e-47 |
| Msa1284390 | Msa1361500 | -0.800880 | 1.170894e-48 | -8.615850e-47 |
| Msa1302010 | Msa1361500 | 0.834656 | 2.641852e-56 | -8.615850e-47 |
| Msa1323150 | Msa1361500 | 0.830180 | 3.395354e-55 | -8.615850e-47 |
| Msa1342400 | Msa1361500 | -0.806594 | 7.624195e-50 | -8.615850e-47 |
| Msa0372380 | Msa1361500 | -0.803418 | 3.520029e-49 | -8.615850e-47 |
| Msa0379500 | Msa1361500 | -0.801274 | 9.729834e-49 | -8.615850e-47 |
| Msa0381370 | Msa1361500 | -0.812625 | 3.858677e-51 | -8.615850e-47 |
| Msa0422520 | Msa1361500 | -0.810933 | 9.009145e-51 | -8.615850e-47 |
| Msa0453970 | Msa1361500 | 0.806614 | 7.552739e-50 | -8.615850e-47 |
| Msa0475360 | Msa1361500 | -0.820027 | 8.520687e-53 | -8.615850e-47 |
| Msa0985260 | Msa1361500 | 0.806637 | 7.467481e-50 | -8.615850e-47 |
| Msa0985290 | Msa1361500 | 0.809442 | 1.888752e-50 | -8.615850e-47 |
| Msa1003240 | Msa1361500 | 0.810555 | 1.087336e-50 | -8.615850e-47 |
| Msa1041550 | Msa1361500 | -0.810735 | 9.941883e-51 | -8.615850e-47 |
| Msa1046220 | Msa1361500 | 0.841426 | 4.786710e-58 | -8.615850e-47 |
| Msa1061670 | Msa1361500 | 0.807913 | 4.007403e-50 | -8.615850e-47 |
| Msa1071310 | Msa1361500 | -0.804491 | 2.105773e-49 | -8.615850e-47 |
| Msa1079610 | Msa1361500 | -0.818520 | 1.878205e-52 | -8.615850e-47 |
| Msa1081530 | Msa1361500 | -0.817916 | 2.572021e-52 | -8.615850e-47 |
| Msa1087380 | Msa1361500 | 0.811498 | 6.792997e-51 | -8.615850e-47 |
| Msa1106960 | Msa1361500 | 0.802482 | 5.495091e-49 | -8.615850e-47 |
| Msa0266640 | Msa1361500 | 0.810539 | 1.096048e-50 | -8.615850e-47 |
| Msa0274260 | Msa1361500 | 0.815702 | 8.072235e-52 | -8.615850e-47 |
| Msa0318370 | Msa1361500 | 0.822604 | 2.167642e-53 | -8.615850e-47 |
| Msa1109890 | Msa1361500 | 0.813089 | 3.054116e-51 | -8.615850e-47 |
| Msa1124440 | Msa1361500 | -0.803539 | 3.321472e-49 | -8.615850e-47 |
| Msa1166450 | Msa1361500 | -0.800063 | 1.717713e-48 | -8.615850e-47 |
| Msa1173290 | Msa1361500 | 0.823554 | 1.301521e-53 | -8.615850e-47 |
| Msa1194170 | Msa1361500 | 0.805742 | 1.152409e-49 | -8.615850e-47 |
| Msa1216120 | Msa1361500 | 0.841020 | 6.120972e-58 | -8.615850e-47 |
| Msa1216370 | Msa1361500 | 0.825593 | 4.307179e-54 | -8.615850e-47 |
| Msa1216700 | Msa1361500 | -0.800503 | 1.397973e-48 | -8.615850e-47 |
| Msa1221170 | Msa1361500 | 0.848968 | 4.369184e-60 | -8.615850e-47 |
| Msa1223510 | Msa1361500 | -0.805454 | 1.324335e-49 | -8.615850e-47 |
| Msa0512770 | Msa1361500 | -0.811829 | 5.754774e-51 | -8.615850e-47 |
| Msa0533510 | Msa1361500 | 0.813229 | 2.844678e-51 | -8.615850e-47 |
| Msa0533520 | Msa1361500 | 0.800828 | 1.199930e-48 | -8.615850e-47 |
| Msa0538450 | Msa1361500 | 0.816134 | 6.467675e-52 | -8.615850e-47 |
| Msa0538520 | Msa1361500 | 0.808502 | 3.000459e-50 | -8.615850e-47 |
| Msa0589720 | Msa1361500 | 0.807292 | 5.428441e-50 | -8.615850e-47 |
| Msa0589730 | Msa1361500 | 0.805636 | 1.213419e-49 | -8.615850e-47 |
| Msa0589750 | Msa1361500 | 0.815603 | 8.494885e-52 | -8.615850e-47 |
| Msa0591490 | Msa1361500 | 0.802121 | 6.519602e-49 | -8.615850e-47 |
| Msa0850520 | Msa1361500 | -0.807122 | 5.897822e-50 | -8.615850e-47 |
| Msa0861480 | Msa1361500 | -0.800076 | 1.707310e-48 | -8.615850e-47 |
| Msa0861560 | Msa1361500 | -0.807170 | 5.761742e-50 | -8.615850e-47 |
| Msa0894580 | Msa1361500 | -0.811277 | 7.587637e-51 | -8.615850e-47 |
| Msa0896920 | Msa1361500 | 0.818243 | 2.169602e-52 | -8.615850e-47 |
| Msa0902340 | Msa1361500 | 0.818988 | 1.470373e-52 | -8.615850e-47 |
| Msa0910570 | Msa1361500 | 0.802845 | 4.624877e-49 | -8.615850e-47 |
| Msa0932930 | Msa1361500 | 0.802825 | 4.667546e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361500 | MtrunA17_Chr4g0072241 | 95.930 | 172 | 7 | 0 | 1 | 172 | 1 | 172 | 1.78e-126 | 352 |
| Msa1361500 | MtrunA17_Chr6g0457461 | 51.220 | 164 | 76 | 3 | 7 | 169 | 16 | 176 | 6.96e-62 | 189 |
| Msa1361500 | MtrunA17_Chr6g0457471 | 50.000 | 168 | 80 | 3 | 3 | 169 | 15 | 179 | 8.27e-62 | 189 |
| Msa1361500 | MtrunA17_Chr7g0215351 | 51.282 | 156 | 72 | 3 | 15 | 169 | 28 | 180 | 5.37e-59 | 182 |
| Msa1361500 | MtrunA17_Chr7g0215361 | 51.948 | 154 | 70 | 3 | 15 | 167 | 28 | 178 | 7.54e-59 | 181 |
| Msa1361500 | MtrunA17_Chr7g0215421 | 51.948 | 154 | 70 | 3 | 15 | 167 | 28 | 178 | 7.96e-59 | 181 |
| Msa1361500 | MtrunA17_Chr7g0215381 | 51.948 | 154 | 70 | 3 | 15 | 167 | 28 | 178 | 1.07e-58 | 181 |
| Msa1361500 | MtrunA17_Chr7g0215431 | 51.299 | 154 | 71 | 3 | 15 | 167 | 28 | 178 | 7.15e-58 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361500 | AT1G67090.1 | 50.000 | 172 | 82 | 3 | 1 | 171 | 11 | 179 | 2.61e-62 | 190 |
| Msa1361500 | AT5G38410.1 | 52.121 | 165 | 75 | 3 | 8 | 171 | 18 | 179 | 2.70e-62 | 190 |
| Msa1361500 | AT5G38420.1 | 52.727 | 165 | 74 | 3 | 8 | 171 | 18 | 179 | 2.73e-62 | 190 |
| Msa1361500 | AT5G38430.1 | 52.121 | 165 | 75 | 3 | 8 | 171 | 18 | 179 | 7.61e-62 | 189 |
| Msa1361500 | AT5G38430.2 | 52.121 | 165 | 75 | 3 | 8 | 171 | 18 | 179 | 7.61e-62 | 189 |
| Msa1361500 | AT5G38410.3 | 50.000 | 170 | 76 | 3 | 8 | 171 | 18 | 184 | 8.38e-61 | 187 |
| Msa1361500 | AT5G38410.2 | 51.220 | 164 | 71 | 4 | 8 | 171 | 18 | 172 | 2.86e-58 | 180 |
| Msa1361500 | AT1G67090.2 | 39.640 | 111 | 64 | 2 | 1 | 111 | 11 | 118 | 2.85e-22 | 87.4 |
Find 57 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATTTCCTATTATTAA+TGG | 0.204312 | tig0017501:-13602 | None:intergenic |
| ATCAGAAAGGGGTGGTAAAT+AGG | 0.291264 | tig0017501:-13632 | None:intergenic |
| TTAGTGGCATATGAATAAAA+TGG | 0.309190 | tig0017501:+14563 | Msa1361500:three_prime_UTR |
| ATGGGAGGTATTGGACATTA+TGG | 0.311655 | tig0017501:+14288 | Msa1361500:CDS |
| TCAAATTTCCTATTATTAAT+GGG | 0.315443 | tig0017501:-13601 | None:intergenic |
| CATGGAATCCCATTAATAAT+AGG | 0.318513 | tig0017501:+13593 | Msa1361500:CDS |
| GCAGCTTCAGTTGCTGGGCC+TGG | 0.319427 | tig0017501:+13320 | Msa1361500:CDS |
| GCATATGAATAAAATGGATT+TGG | 0.334280 | tig0017501:+14569 | Msa1361500:three_prime_UTR |
| AGTCCAACTCATCAAATCTT+TGG | 0.338452 | tig0017501:+13357 | Msa1361500:CDS |
| GAAGAGAAATAAGAACAAAA+TGG | 0.341169 | tig0017501:-14491 | None:intergenic |
| ACATTTGCAGCTTCAGTTGC+TGG | 0.348801 | tig0017501:+13314 | Msa1361500:CDS |
| AAGCATCTTATATATGCATT+TGG | 0.378298 | tig0017501:-14383 | None:intergenic |
| TAAGTAGTTGTTGTGGTAGT+AGG | 0.382906 | tig0017501:-14458 | None:intergenic |
| TTCAATGGAATAAGTAGTAC+TGG | 0.385537 | tig0017501:-13381 | None:intergenic |
| GATGAAAGGAAGAAAGGAAT+AGG | 0.393693 | tig0017501:-13232 | None:intergenic |
| CATTTGCAGCTTCAGTTGCT+GGG | 0.394890 | tig0017501:+13315 | Msa1361500:CDS |
| GATACTATGATGGGAGGTAT+TGG | 0.398812 | tig0017501:+14279 | Msa1361500:CDS |
| GTACTACTTATTCCATTGAA+TGG | 0.406489 | tig0017501:+13384 | Msa1361500:CDS |
| TTATGGAAGCTACCAATGTT+TGG | 0.409185 | tig0017501:+14305 | Msa1361500:CDS |
| GACTTCAAGCCCACGAAGCC+AGG | 0.412788 | tig0017501:-13338 | None:intergenic |
| ATTAGTGTATTAATATATCT+TGG | 0.413683 | tig0017501:+14634 | Msa1361500:three_prime_UTR |
| AGTTGCTGGGCCTGGCTTCG+TGG | 0.418413 | tig0017501:+13328 | Msa1361500:CDS |
| GTAGCGTAGTACTTGTTTAG+TGG | 0.420260 | tig0017501:+14547 | Msa1361500:three_prime_UTR |
| AATAAATGTCTGATCTTTGA+AGG | 0.426750 | tig0017501:-13270 | None:intergenic |
| TGCAATTGAGTCATCAGAAA+GGG | 0.441885 | tig0017501:-13644 | None:intergenic |
| GACTAACCTCATCAAATTCA+AGG | 0.447817 | tig0017501:-13708 | None:intergenic |
| GTTGCTGGGCCTGGCTTCGT+GGG | 0.452270 | tig0017501:+13329 | Msa1361500:CDS |
| AGTTGAGATGAAAGGAAGAA+AGG | 0.465571 | tig0017501:-13238 | None:intergenic |
| CATCATAGTATCCTGGCATC+TGG | 0.482846 | tig0017501:-14268 | None:intergenic |
| GCAGTGAATCTTAGAACCAT+TGG | 0.489711 | tig0017501:-13423 | None:intergenic |
| AGGAAGAAAGGAATAGGCTT+AGG | 0.507763 | tig0017501:-13226 | None:intergenic |
| CAGATGCCAGGATACTATGA+TGG | 0.514747 | tig0017501:+14269 | Msa1361500:CDS |
| GGCAGAATAGTTGAGATGAA+AGG | 0.524279 | tig0017501:-13246 | None:intergenic |
| GGGCCAAAGATTTGATGAGT+TGG | 0.537281 | tig0017501:-13360 | None:intergenic |
| ATAAAATGGATTTGGAAAGT+CGG | 0.537618 | tig0017501:+14577 | Msa1361500:three_prime_UTR |
| GATTGACTACATGCTCAAGA+AGG | 0.539499 | tig0017501:+13672 | Msa1361500:CDS |
| TACCTCCCATCATAGTATCC+TGG | 0.541106 | tig0017501:-14275 | None:intergenic |
| TTCTGATGACTCAATTGCAA+AGG | 0.545642 | tig0017501:+13648 | Msa1361500:CDS |
| TTTGTGAATAATAAAAGCCA+TGG | 0.556871 | tig0017501:-14435 | None:intergenic |
| TTCTAAGATTCACTGCATGA+AGG | 0.557279 | tig0017501:+13430 | Msa1361500:CDS |
| TTGCAATTGAGTCATCAGAA+AGG | 0.572127 | tig0017501:-13645 | None:intergenic |
| AGAGCAAATAGCCAGATGCC+AGG | 0.574689 | tig0017501:+14257 | Msa1361500:CDS |
| ACCTCATCAAATTCAAGGCA+AGG | 0.584505 | tig0017501:-13703 | None:intergenic |
| AGATGCCAGGATACTATGAT+GGG | 0.593649 | tig0017501:+14270 | Msa1361500:CDS |
| CAAGCGACACATGCAAGCCA+TGG | 0.600771 | tig0017501:+14418 | Msa1361500:CDS |
| ATTGACTACATGCTCAAGAA+GGG | 0.603348 | tig0017501:+13673 | Msa1361500:CDS |
| ACCTTGCCTTGAATTTGATG+AGG | 0.604745 | tig0017501:+13702 | Msa1361500:CDS |
| AAGACTGAGAATTTCAACAA+AGG | 0.606526 | tig0017501:-14518 | None:intergenic |
| ACTACATGCTCAAGAAGGGA+TGG | 0.608538 | tig0017501:+13677 | Msa1361500:CDS |
| CATTAATTAAGTAGTTGTTG+TGG | 0.613494 | tig0017501:-14465 | None:intergenic |
| GCAATTGAGTCATCAGAAAG+GGG | 0.629169 | tig0017501:-13643 | None:intergenic |
| TCAATGGAATAAGTAGTACT+GGG | 0.635347 | tig0017501:-13380 | None:intergenic |
| AATCTTAGAACCATTGGAGA+CGG | 0.640552 | tig0017501:-13417 | None:intergenic |
| AAATGTCTGATCTTTGAAGG+AGG | 0.660147 | tig0017501:-13267 | None:intergenic |
| TGCCAGGATACTATGATGGG+AGG | 0.662604 | tig0017501:+14273 | Msa1361500:CDS |
| GAGTCGTTACAACCAAACAT+TGG | 0.684048 | tig0017501:-14317 | None:intergenic |
| ATTGAGTCATCAGAAAGGGG+TGG | 0.697277 | tig0017501:-13640 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTATAAACTAGATTT+AGG | - | tig0017501:13737-13756 | None:intergenic | 10.0% |
| !!! | TAAATCTAGTTTATAATATA+AGG | + | tig0017501:13736-13755 | Msa1361500:intron | 10.0% |
| !! | TGTATATCTTATTAATAATA+TGG | + | tig0017501:14194-14213 | Msa1361500:intron | 10.0% |
| !! | TTATATTATAAACTAGATTT+AGG | - | tig0017501:13737-13756 | None:intergenic | 10.0% |
| !!! | TAAATCTAGTTTATAATATA+AGG | + | tig0017501:13736-13755 | Msa1361500:intron | 10.0% |
| !! | TGTATATCTTATTAATAATA+TGG | + | tig0017501:14194-14213 | Msa1361500:intron | 10.0% |
| !! | TCAAATTTCCTATTATTAAT+GGG | - | tig0017501:13604-13623 | None:intergenic | 15.0% |
| !! | TTCAAATTTCCTATTATTAA+TGG | - | tig0017501:13605-13624 | None:intergenic | 15.0% |
| !! | ATTATAAGGAAAAAACAATT+AGG | + | tig0017501:13773-13792 | Msa1361500:intron | 15.0% |
| !! | GATTCATATAATATAGATTA+AGG | + | tig0017501:13826-13845 | Msa1361500:intron | 15.0% |
| !!! | AAGTTATACAAAAGTTTTAT+TGG | - | tig0017501:14112-14131 | None:intergenic | 15.0% |
| !! | ATTAGTGTATTAATATATCT+TGG | + | tig0017501:14634-14653 | Msa1361500:three_prime_UTR | 15.0% |
| !! | TCAAATTTCCTATTATTAAT+GGG | - | tig0017501:13604-13623 | None:intergenic | 15.0% |
| !! | TTCAAATTTCCTATTATTAA+TGG | - | tig0017501:13605-13624 | None:intergenic | 15.0% |
| !! | ATTATAAGGAAAAAACAATT+AGG | + | tig0017501:13773-13792 | Msa1361500:intron | 15.0% |
| !! | GATTCATATAATATAGATTA+AGG | + | tig0017501:13826-13845 | Msa1361500:intron | 15.0% |
| !!! | AAGTTATACAAAAGTTTTAT+TGG | - | tig0017501:14112-14131 | None:intergenic | 15.0% |
| !! | ATTATAAACTAGATTTAGGT+TGG | - | tig0017501:13733-13752 | None:intergenic | 20.0% |
| !!! | CTTTAATTTATTCTATGAAG+TGG | + | tig0017501:14129-14148 | Msa1361500:intron | 20.0% |
| !! | TAGAAAACAAAAACATCAAA+AGG | - | tig0017501:14169-14188 | None:intergenic | 20.0% |
| !! | ATTATAAACTAGATTTAGGT+TGG | - | tig0017501:13733-13752 | None:intergenic | 20.0% |
| !!! | CTTTAATTTATTCTATGAAG+TGG | + | tig0017501:14129-14148 | Msa1361500:intron | 20.0% |
| !! | TAGAAAACAAAAACATCAAA+AGG | - | tig0017501:14169-14188 | None:intergenic | 20.0% |
| ! | AATAAATGTCTGATCTTTGA+AGG | - | tig0017501:13273-13292 | None:intergenic | 25.0% |
| ! | ATTTGATTAAAAATGTCTGC+AGG | + | tig0017501:13290-13309 | Msa1361500:exon | 25.0% |
| ! | AACCATGCTATCATAATATA+TGG | - | tig0017501:13477-13496 | None:intergenic | 25.0% |
| ! | TTTGTAACTTAAAACAGACA+TGG | + | tig0017501:13575-13594 | Msa1361500:intron | 25.0% |
| ! | ATATAGATTAAGGCAATGTT+TGG | + | tig0017501:13836-13855 | Msa1361500:intron | 25.0% |
| ! | AATATGGAACTTGTATTGTT+TGG | + | tig0017501:14210-14229 | Msa1361500:intron | 25.0% |
| ! | AAGCATCTTATATATGCATT+TGG | - | tig0017501:14386-14405 | None:intergenic | 25.0% |
| ! | TTTGTGAATAATAAAAGCCA+TGG | - | tig0017501:14438-14457 | None:intergenic | 25.0% |
| ! | CATTAATTAAGTAGTTGTTG+TGG | - | tig0017501:14468-14487 | None:intergenic | 25.0% |
| ! | GAAGAGAAATAAGAACAAAA+TGG | - | tig0017501:14494-14513 | None:intergenic | 25.0% |
| ! | TTAGTGGCATATGAATAAAA+TGG | + | tig0017501:14563-14582 | Msa1361500:three_prime_UTR | 25.0% |
| !! | GCATATGAATAAAATGGATT+TGG | + | tig0017501:14569-14588 | Msa1361500:three_prime_UTR | 25.0% |
| !! | ATAAAATGGATTTGGAAAGT+CGG | + | tig0017501:14577-14596 | Msa1361500:three_prime_UTR | 25.0% |
| ! | AATAAATGTCTGATCTTTGA+AGG | - | tig0017501:13273-13292 | None:intergenic | 25.0% |
| ! | ATTTGATTAAAAATGTCTGC+AGG | + | tig0017501:13290-13309 | Msa1361500:exon | 25.0% |
| ! | AACCATGCTATCATAATATA+TGG | - | tig0017501:13477-13496 | None:intergenic | 25.0% |
| ! | TTTGTAACTTAAAACAGACA+TGG | + | tig0017501:13575-13594 | Msa1361500:intron | 25.0% |
| ! | ATATAGATTAAGGCAATGTT+TGG | + | tig0017501:13836-13855 | Msa1361500:intron | 25.0% |
| ! | AATATGGAACTTGTATTGTT+TGG | + | tig0017501:14210-14229 | Msa1361500:intron | 25.0% |
| ! | AAGCATCTTATATATGCATT+TGG | - | tig0017501:14386-14405 | None:intergenic | 25.0% |
| ! | TTTGTGAATAATAAAAGCCA+TGG | - | tig0017501:14438-14457 | None:intergenic | 25.0% |
| ! | CATTAATTAAGTAGTTGTTG+TGG | - | tig0017501:14468-14487 | None:intergenic | 25.0% |
| ! | GAAGAGAAATAAGAACAAAA+TGG | - | tig0017501:14494-14513 | None:intergenic | 25.0% |
| ! | TTAGTGGCATATGAATAAAA+TGG | + | tig0017501:14563-14582 | Msa1361500:three_prime_UTR | 25.0% |
| !! | GCATATGAATAAAATGGATT+TGG | + | tig0017501:14569-14588 | Msa1361500:three_prime_UTR | 25.0% |
| !! | ATAAAATGGATTTGGAAAGT+CGG | + | tig0017501:14577-14596 | Msa1361500:three_prime_UTR | 25.0% |
| TCAATGGAATAAGTAGTACT+GGG | - | tig0017501:13383-13402 | None:intergenic | 30.0% | |
| TTCAATGGAATAAGTAGTAC+TGG | - | tig0017501:13384-13403 | None:intergenic | 30.0% | |
| GTACTACTTATTCCATTGAA+TGG | + | tig0017501:13384-13403 | Msa1361500:CDS | 30.0% | |
| AGCCATATATTATGATAGCA+TGG | + | tig0017501:13472-13491 | Msa1361500:intron | 30.0% | |
| GAAAAGAAAAAGACCAAGAT+GGG | - | tig0017501:13519-13538 | None:intergenic | 30.0% | |
| AGAAAAGAAAAAGACCAAGA+TGG | - | tig0017501:13520-13539 | None:intergenic | 30.0% | |
| CATGGAATCCCATTAATAAT+AGG | + | tig0017501:13593-13612 | Msa1361500:CDS | 30.0% | |
| GAACTTGTATTGTTTGGAAA+TGG | + | tig0017501:14216-14235 | Msa1361500:intron | 30.0% | |
| ATTGTTTGGAAATGGAAGTA+TGG | + | tig0017501:14224-14243 | Msa1361500:intron | 30.0% | |
| AAGACTGAGAATTTCAACAA+AGG | - | tig0017501:14521-14540 | None:intergenic | 30.0% | |
| TCAATGGAATAAGTAGTACT+GGG | - | tig0017501:13383-13402 | None:intergenic | 30.0% | |
| TTCAATGGAATAAGTAGTAC+TGG | - | tig0017501:13384-13403 | None:intergenic | 30.0% | |
| GTACTACTTATTCCATTGAA+TGG | + | tig0017501:13384-13403 | Msa1361500:CDS | 30.0% | |
| AGCCATATATTATGATAGCA+TGG | + | tig0017501:13472-13491 | Msa1361500:intron | 30.0% | |
| GAAAAGAAAAAGACCAAGAT+GGG | - | tig0017501:13519-13538 | None:intergenic | 30.0% | |
| AGAAAAGAAAAAGACCAAGA+TGG | - | tig0017501:13520-13539 | None:intergenic | 30.0% | |
| CATGGAATCCCATTAATAAT+AGG | + | tig0017501:13593-13612 | Msa1361500:CDS | 30.0% | |
| GAACTTGTATTGTTTGGAAA+TGG | + | tig0017501:14216-14235 | Msa1361500:intron | 30.0% | |
| ATTGTTTGGAAATGGAAGTA+TGG | + | tig0017501:14224-14243 | Msa1361500:intron | 30.0% | |
| AAGACTGAGAATTTCAACAA+AGG | - | tig0017501:14521-14540 | None:intergenic | 30.0% | |
| GATGAAAGGAAGAAAGGAAT+AGG | - | tig0017501:13235-13254 | None:intergenic | 35.0% | |
| AGTTGAGATGAAAGGAAGAA+AGG | - | tig0017501:13241-13260 | None:intergenic | 35.0% | |
| ! | AAATGTCTGATCTTTGAAGG+AGG | - | tig0017501:13270-13289 | None:intergenic | 35.0% |
| AGTCCAACTCATCAAATCTT+TGG | + | tig0017501:13357-13376 | Msa1361500:CDS | 35.0% | |
| ! | GGTCTTCTTTTTCCATTCAA+TGG | - | tig0017501:13399-13418 | None:intergenic | 35.0% |
| AATCTTAGAACCATTGGAGA+CGG | - | tig0017501:13420-13439 | None:intergenic | 35.0% | |
| !! | TTCTAAGATTCACTGCATGA+AGG | + | tig0017501:13430-13449 | Msa1361500:CDS | 35.0% |
| TGCAATTGAGTCATCAGAAA+GGG | - | tig0017501:13647-13666 | None:intergenic | 35.0% | |
| TTGCAATTGAGTCATCAGAA+AGG | - | tig0017501:13648-13667 | None:intergenic | 35.0% | |
| TTCTGATGACTCAATTGCAA+AGG | + | tig0017501:13648-13667 | Msa1361500:CDS | 35.0% | |
| ATTGACTACATGCTCAAGAA+GGG | + | tig0017501:13673-13692 | Msa1361500:CDS | 35.0% | |
| GACTAACCTCATCAAATTCA+AGG | - | tig0017501:13711-13730 | None:intergenic | 35.0% | |
| TTATGGAAGCTACCAATGTT+TGG | + | tig0017501:14305-14324 | Msa1361500:CDS | 35.0% | |
| TAAGTAGTTGTTGTGGTAGT+AGG | - | tig0017501:14461-14480 | None:intergenic | 35.0% | |
| GATGAAAGGAAGAAAGGAAT+AGG | - | tig0017501:13235-13254 | None:intergenic | 35.0% | |
| AGTTGAGATGAAAGGAAGAA+AGG | - | tig0017501:13241-13260 | None:intergenic | 35.0% | |
| ! | AAATGTCTGATCTTTGAAGG+AGG | - | tig0017501:13270-13289 | None:intergenic | 35.0% |
| AGTCCAACTCATCAAATCTT+TGG | + | tig0017501:13357-13376 | Msa1361500:CDS | 35.0% | |
| ! | GGTCTTCTTTTTCCATTCAA+TGG | - | tig0017501:13399-13418 | None:intergenic | 35.0% |
| AATCTTAGAACCATTGGAGA+CGG | - | tig0017501:13420-13439 | None:intergenic | 35.0% | |
| !! | TTCTAAGATTCACTGCATGA+AGG | + | tig0017501:13430-13449 | Msa1361500:CDS | 35.0% |
| TGCAATTGAGTCATCAGAAA+GGG | - | tig0017501:13647-13666 | None:intergenic | 35.0% | |
| TTGCAATTGAGTCATCAGAA+AGG | - | tig0017501:13648-13667 | None:intergenic | 35.0% | |
| TTCTGATGACTCAATTGCAA+AGG | + | tig0017501:13648-13667 | Msa1361500:CDS | 35.0% | |
| ATTGACTACATGCTCAAGAA+GGG | + | tig0017501:13673-13692 | Msa1361500:CDS | 35.0% | |
| GACTAACCTCATCAAATTCA+AGG | - | tig0017501:13711-13730 | None:intergenic | 35.0% | |
| TTATGGAAGCTACCAATGTT+TGG | + | tig0017501:14305-14324 | Msa1361500:CDS | 35.0% | |
| TAAGTAGTTGTTGTGGTAGT+AGG | - | tig0017501:14461-14480 | None:intergenic | 35.0% | |
| AGGAAGAAAGGAATAGGCTT+AGG | - | tig0017501:13229-13248 | None:intergenic | 40.0% | |
| GGCAGAATAGTTGAGATGAA+AGG | - | tig0017501:13249-13268 | None:intergenic | 40.0% | |
| AAAAAGAAGACCGTCTCCAA+TGG | + | tig0017501:13407-13426 | Msa1361500:CDS | 40.0% | |
| GCAGTGAATCTTAGAACCAT+TGG | - | tig0017501:13426-13445 | None:intergenic | 40.0% | |
| ATGTACTAGTACTCCCATCT+TGG | + | tig0017501:13503-13522 | Msa1361500:intron | 40.0% | |
| ATCAGAAAGGGGTGGTAAAT+AGG | - | tig0017501:13635-13654 | None:intergenic | 40.0% | |
| GCAATTGAGTCATCAGAAAG+GGG | - | tig0017501:13646-13665 | None:intergenic | 40.0% | |
| GATTGACTACATGCTCAAGA+AGG | + | tig0017501:13672-13691 | Msa1361500:CDS | 40.0% | |
| ACCTTGCCTTGAATTTGATG+AGG | + | tig0017501:13702-13721 | Msa1361500:CDS | 40.0% | |
| ACCTCATCAAATTCAAGGCA+AGG | - | tig0017501:13706-13725 | None:intergenic | 40.0% | |
| AGATGCCAGGATACTATGAT+GGG | + | tig0017501:14270-14289 | Msa1361500:CDS | 40.0% | |
| ! | GATACTATGATGGGAGGTAT+TGG | + | tig0017501:14279-14298 | Msa1361500:CDS | 40.0% |
| !! | ATGGGAGGTATTGGACATTA+TGG | + | tig0017501:14288-14307 | Msa1361500:CDS | 40.0% |
| GAGTCGTTACAACCAAACAT+TGG | - | tig0017501:14320-14339 | None:intergenic | 40.0% | |
| GTAGCGTAGTACTTGTTTAG+TGG | + | tig0017501:14547-14566 | Msa1361500:three_prime_UTR | 40.0% | |
| AGGAAGAAAGGAATAGGCTT+AGG | - | tig0017501:13229-13248 | None:intergenic | 40.0% | |
| GGCAGAATAGTTGAGATGAA+AGG | - | tig0017501:13249-13268 | None:intergenic | 40.0% | |
| AAAAAGAAGACCGTCTCCAA+TGG | + | tig0017501:13407-13426 | Msa1361500:CDS | 40.0% | |
| GCAGTGAATCTTAGAACCAT+TGG | - | tig0017501:13426-13445 | None:intergenic | 40.0% | |
| ATGTACTAGTACTCCCATCT+TGG | + | tig0017501:13503-13522 | Msa1361500:intron | 40.0% | |
| ATCAGAAAGGGGTGGTAAAT+AGG | - | tig0017501:13635-13654 | None:intergenic | 40.0% | |
| GCAATTGAGTCATCAGAAAG+GGG | - | tig0017501:13646-13665 | None:intergenic | 40.0% | |
| GATTGACTACATGCTCAAGA+AGG | + | tig0017501:13672-13691 | Msa1361500:CDS | 40.0% | |
| ACCTTGCCTTGAATTTGATG+AGG | + | tig0017501:13702-13721 | Msa1361500:CDS | 40.0% | |
| ACCTCATCAAATTCAAGGCA+AGG | - | tig0017501:13706-13725 | None:intergenic | 40.0% | |
| AGATGCCAGGATACTATGAT+GGG | + | tig0017501:14270-14289 | Msa1361500:CDS | 40.0% | |
| ! | GATACTATGATGGGAGGTAT+TGG | + | tig0017501:14279-14298 | Msa1361500:CDS | 40.0% |
| !! | ATGGGAGGTATTGGACATTA+TGG | + | tig0017501:14288-14307 | Msa1361500:CDS | 40.0% |
| GAGTCGTTACAACCAAACAT+TGG | - | tig0017501:14320-14339 | None:intergenic | 40.0% | |
| GTAGCGTAGTACTTGTTTAG+TGG | + | tig0017501:14547-14566 | Msa1361500:three_prime_UTR | 40.0% | |
| ACATTTGCAGCTTCAGTTGC+TGG | + | tig0017501:13314-13333 | Msa1361500:CDS | 45.0% | |
| CATTTGCAGCTTCAGTTGCT+GGG | + | tig0017501:13315-13334 | Msa1361500:CDS | 45.0% | |
| GGGCCAAAGATTTGATGAGT+TGG | - | tig0017501:13363-13382 | None:intergenic | 45.0% | |
| ATTGAGTCATCAGAAAGGGG+TGG | - | tig0017501:13643-13662 | None:intergenic | 45.0% | |
| ACTACATGCTCAAGAAGGGA+TGG | + | tig0017501:13677-13696 | Msa1361500:CDS | 45.0% | |
| CATCATAGTATCCTGGCATC+TGG | - | tig0017501:14271-14290 | None:intergenic | 45.0% | |
| CAGATGCCAGGATACTATGA+TGG | + | tig0017501:14269-14288 | Msa1361500:CDS | 45.0% | |
| TACCTCCCATCATAGTATCC+TGG | - | tig0017501:14278-14297 | None:intergenic | 45.0% | |
| ACATTTGCAGCTTCAGTTGC+TGG | + | tig0017501:13314-13333 | Msa1361500:CDS | 45.0% | |
| CATTTGCAGCTTCAGTTGCT+GGG | + | tig0017501:13315-13334 | Msa1361500:CDS | 45.0% | |
| GGGCCAAAGATTTGATGAGT+TGG | - | tig0017501:13363-13382 | None:intergenic | 45.0% | |
| ATTGAGTCATCAGAAAGGGG+TGG | - | tig0017501:13643-13662 | None:intergenic | 45.0% | |
| ACTACATGCTCAAGAAGGGA+TGG | + | tig0017501:13677-13696 | Msa1361500:CDS | 45.0% | |
| CATCATAGTATCCTGGCATC+TGG | - | tig0017501:14271-14290 | None:intergenic | 45.0% | |
| CAGATGCCAGGATACTATGA+TGG | + | tig0017501:14269-14288 | Msa1361500:CDS | 45.0% | |
| TACCTCCCATCATAGTATCC+TGG | - | tig0017501:14278-14297 | None:intergenic | 45.0% | |
| !!! | TAGTTTTTTTTATTATTATA+AGG | + | tig0017501:13759-13778 | Msa1361500:intron | 5.0% |
| !!! | TAGTTTTTTTTATTATTATA+AGG | + | tig0017501:13759-13778 | Msa1361500:intron | 5.0% |
| AGAGCAAATAGCCAGATGCC+AGG | + | tig0017501:14257-14276 | Msa1361500:CDS | 50.0% | |
| ! | TGCCAGGATACTATGATGGG+AGG | + | tig0017501:14273-14292 | Msa1361500:CDS | 50.0% |
| AGAGCAAATAGCCAGATGCC+AGG | + | tig0017501:14257-14276 | Msa1361500:CDS | 50.0% | |
| ! | TGCCAGGATACTATGATGGG+AGG | + | tig0017501:14273-14292 | Msa1361500:CDS | 50.0% |
| CAAGCGACACATGCAAGCCA+TGG | + | tig0017501:14418-14437 | Msa1361500:CDS | 55.0% | |
| CAAGCGACACATGCAAGCCA+TGG | + | tig0017501:14418-14437 | Msa1361500:CDS | 55.0% | |
| GACTTCAAGCCCACGAAGCC+AGG | - | tig0017501:13341-13360 | None:intergenic | 60.0% | |
| GACTTCAAGCCCACGAAGCC+AGG | - | tig0017501:13341-13360 | None:intergenic | 60.0% | |
| GCAGCTTCAGTTGCTGGGCC+TGG | + | tig0017501:13320-13339 | Msa1361500:CDS | 65.0% | |
| AGTTGCTGGGCCTGGCTTCG+TGG | + | tig0017501:13328-13347 | Msa1361500:CDS | 65.0% | |
| GTTGCTGGGCCTGGCTTCGT+GGG | + | tig0017501:13329-13348 | Msa1361500:CDS | 65.0% | |
| GCAGCTTCAGTTGCTGGGCC+TGG | + | tig0017501:13320-13339 | Msa1361500:CDS | 65.0% | |
| AGTTGCTGGGCCTGGCTTCG+TGG | + | tig0017501:13328-13347 | Msa1361500:CDS | 65.0% | |
| GTTGCTGGGCCTGGCTTCGT+GGG | + | tig0017501:13329-13348 | Msa1361500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017501 | gene | 13204 | 14656 | 13204 | ID=Msa1361500;Name=Msa1361500 |
| tig0017501 | mRNA | 13204 | 14656 | 13204 | ID=Msa1361500-mRNA-1;Parent=Msa1361500;Name=Msa1361500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=98|1|1|1|1|1|3|175|173 |
| tig0017501 | exon | 13204 | 13451 | 13204 | ID=Msa1361500-mRNA-1:exon:12447;Parent=Msa1361500-mRNA-1 |
| tig0017501 | exon | 13592 | 13723 | 13592 | ID=Msa1361500-mRNA-1:exon:12448;Parent=Msa1361500-mRNA-1 |
| tig0017501 | exon | 14242 | 14656 | 14242 | ID=Msa1361500-mRNA-1:exon:12449;Parent=Msa1361500-mRNA-1 |
| tig0017501 | five_prime_UTR | 13204 | 13301 | 13204 | ID=Msa1361500-mRNA-1:five_prime_utr;Parent=Msa1361500-mRNA-1 |
| tig0017501 | CDS | 13302 | 13451 | 13302 | ID=Msa1361500-mRNA-1:cds;Parent=Msa1361500-mRNA-1 |
| tig0017501 | CDS | 13592 | 13723 | 13592 | ID=Msa1361500-mRNA-1:cds;Parent=Msa1361500-mRNA-1 |
| tig0017501 | CDS | 14242 | 14481 | 14242 | ID=Msa1361500-mRNA-1:cds;Parent=Msa1361500-mRNA-1 |
| tig0017501 | three_prime_UTR | 14482 | 14656 | 14482 | ID=Msa1361500-mRNA-1:three_prime_utr;Parent=Msa1361500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
