Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003240 | XP_013447781.1 | 95.152 | 165 | 5 | 1 | 1 | 165 | 1 | 162 | 7.61e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003240 | sp|Q9SGU2|SAU71_ARATH | 47.887 | 71 | 37 | 0 | 60 | 130 | 28 | 98 | 4.73e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003240 | I3T7S1 | 95.152 | 165 | 5 | 1 | 1 | 165 | 1 | 162 | 3.63e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025370 | Msa1003240 | 0.802219 | 6.223420e-49 | -8.615850e-47 |
| Msa0036580 | Msa1003240 | 0.831636 | 1.492017e-55 | -8.615850e-47 |
| Msa0048950 | Msa1003240 | 0.808918 | 2.446061e-50 | -8.615850e-47 |
| Msa0057740 | Msa1003240 | -0.801024 | 1.094313e-48 | -8.615850e-47 |
| Msa0059880 | Msa1003240 | 0.843616 | 1.256012e-58 | -8.615850e-47 |
| Msa0061600 | Msa1003240 | 0.801679 | 8.034511e-49 | -8.615850e-47 |
| Msa0085710 | Msa1003240 | 0.800740 | 1.250909e-48 | -8.615850e-47 |
| Msa0093530 | Msa1003240 | 0.804490 | 2.106520e-49 | -8.615850e-47 |
| Msa0103060 | Msa1003240 | -0.800740 | 1.250590e-48 | -8.615850e-47 |
| Msa0630130 | Msa1003240 | 0.822220 | 2.660898e-53 | -8.615850e-47 |
| Msa0645100 | Msa1003240 | 0.813219 | 2.859214e-51 | -8.615850e-47 |
| Msa0667640 | Msa1003240 | 0.821927 | 3.112111e-53 | -8.615850e-47 |
| Msa0668210 | Msa1003240 | 0.848824 | 4.791815e-60 | -8.615850e-47 |
| Msa0668220 | Msa1003240 | 0.813626 | 2.327352e-51 | -8.615850e-47 |
| Msa0668230 | Msa1003240 | 0.837276 | 5.717913e-57 | -8.615850e-47 |
| Msa0672350 | Msa1003240 | -0.801581 | 8.417876e-49 | -8.615850e-47 |
| Msa0672780 | Msa1003240 | 0.807764 | 4.310900e-50 | -8.615850e-47 |
| Msa0678620 | Msa1003240 | 0.810124 | 1.347284e-50 | -8.615850e-47 |
| Msa0709820 | Msa1003240 | 0.806744 | 7.090237e-50 | -8.615850e-47 |
| Msa0711230 | Msa1003240 | 0.822420 | 2.392342e-53 | -8.615850e-47 |
| Msa0711240 | Msa1003240 | 0.820334 | 7.244747e-53 | -8.615850e-47 |
| Msa0715260 | Msa1003240 | 0.809610 | 1.737504e-50 | -8.615850e-47 |
| Msa0721260 | Msa1003240 | 0.815413 | 9.364920e-52 | -8.615850e-47 |
| Msa0735340 | Msa1003240 | 0.820989 | 5.124543e-53 | -8.615850e-47 |
| Msa0738660 | Msa1003240 | 0.806348 | 8.593161e-50 | -8.615850e-47 |
| Msa0747500 | Msa1003240 | 0.821790 | 3.347102e-53 | -8.615850e-47 |
| Msa0753410 | Msa1003240 | 0.801000 | 1.106908e-48 | -8.615850e-47 |
| Msa0757240 | Msa1003240 | 0.807695 | 4.458763e-50 | -8.615850e-47 |
| Msa0757990 | Msa1003240 | 0.813681 | 2.262688e-51 | -8.615850e-47 |
| Msa0795330 | Msa1003240 | 0.813862 | 2.064808e-51 | -8.615850e-47 |
| Msa0798230 | Msa1003240 | 0.813423 | 2.579202e-51 | -8.615850e-47 |
| Msa0836740 | Msa1003240 | 0.807100 | 5.962285e-50 | -8.615850e-47 |
| Msa0126960 | Msa1003240 | 0.802381 | 5.765184e-49 | -8.615850e-47 |
| Msa0139270 | Msa1003240 | 0.835937 | 1.254153e-56 | -8.615850e-47 |
| Msa0143710 | Msa1003240 | 0.800028 | 1.746732e-48 | -8.615850e-47 |
| Msa0150910 | Msa1003240 | 0.810185 | 1.307101e-50 | -8.615850e-47 |
| Msa0176620 | Msa1003240 | 0.825787 | 3.874137e-54 | -8.615850e-47 |
| Msa0197750 | Msa1003240 | 0.808059 | 3.730729e-50 | -8.615850e-47 |
| Msa0199860 | Msa1003240 | 0.807102 | 5.954437e-50 | -8.615850e-47 |
| Msa0393900 | Msa1003240 | 0.805617 | 1.224585e-49 | -8.615850e-47 |
| Msa0424240 | Msa1003240 | 0.804748 | 1.861006e-49 | -8.615850e-47 |
| Msa0424300 | Msa1003240 | 0.807968 | 3.899640e-50 | -8.615850e-47 |
| Msa0434890 | Msa1003240 | 0.800171 | 1.633262e-48 | -8.615850e-47 |
| Msa0453970 | Msa1003240 | 0.803540 | 3.320154e-49 | -8.615850e-47 |
| Msa0985250 | Msa1003240 | 0.814476 | 1.510959e-51 | -8.615850e-47 |
| Msa0985700 | Msa1003240 | 0.812684 | 3.745051e-51 | -8.615850e-47 |
| Msa0996940 | Msa1003240 | 0.829164 | 5.998225e-55 | -8.615850e-47 |
| Msa1003240 | Msa1026050 | 0.820201 | 7.771454e-53 | -8.615850e-47 |
| Msa1003240 | Msa1046220 | 0.961818 | 3.816331e-120 | -8.615850e-47 |
| Msa1003240 | Msa1061670 | 0.800172 | 1.632437e-48 | -8.615850e-47 |
| Msa1003240 | Msa1067910 | -0.817258 | 3.619116e-52 | -8.615850e-47 |
| Msa1003240 | Msa1077940 | 0.808657 | 2.780803e-50 | -8.615850e-47 |
| Msa1003240 | Msa1079610 | -0.813728 | 2.209947e-51 | -8.615850e-47 |
| Msa1003240 | Msa1087380 | 0.817861 | 2.646754e-52 | -8.615850e-47 |
| Msa1003240 | Msa1109880 | 0.809319 | 2.006784e-50 | -8.615850e-47 |
| Msa1003240 | Msa1109890 | 0.830794 | 2.402984e-55 | -8.615850e-47 |
| Msa1003240 | Msa1113210 | -0.803996 | 2.670209e-49 | -8.615850e-47 |
| Msa1003240 | Msa1138110 | 0.823949 | 1.051468e-53 | -8.615850e-47 |
| Msa1003240 | Msa1208250 | -0.811282 | 7.568448e-51 | -8.615850e-47 |
| Msa1003240 | Msa1208910 | 0.817933 | 2.549976e-52 | -8.615850e-47 |
| Msa1003240 | Msa1214960 | 0.803499 | 3.386002e-49 | -8.615850e-47 |
| Msa1003240 | Msa1219780 | 0.826147 | 3.182280e-54 | -8.615850e-47 |
| Msa1003240 | Msa1221170 | 0.843585 | 1.279677e-58 | -8.615850e-47 |
| Msa1003240 | Msa1222030 | 0.801358 | 9.349812e-49 | -8.615850e-47 |
| Msa1003240 | Msa1259560 | 0.800972 | 1.121670e-48 | -8.615850e-47 |
| Msa1003240 | Msa1263000 | 0.811529 | 6.690168e-51 | -8.615850e-47 |
| Msa1003240 | Msa1265500 | 0.834193 | 3.453739e-56 | -8.615850e-47 |
| Msa1003240 | Msa1266710 | 0.823642 | 1.240825e-53 | -8.615850e-47 |
| Msa1003240 | Msa1302010 | 0.805120 | 1.556363e-49 | -8.615850e-47 |
| Msa1003240 | Msa1323030 | 0.820966 | 5.188245e-53 | -8.615850e-47 |
| Msa1003240 | Msa1323150 | 0.844328 | 8.094298e-59 | -8.615850e-47 |
| Msa1003240 | Msa1323160 | 0.812245 | 4.671525e-51 | -8.615850e-47 |
| Msa1003240 | Msa1357380 | -0.810964 | 8.870551e-51 | -8.615850e-47 |
| Msa1003240 | Msa1361500 | 0.810555 | 1.087336e-50 | -8.615850e-47 |
| Msa1003240 | Msa1366700 | -0.806897 | 6.579386e-50 | -8.615850e-47 |
| Msa1003240 | Msa1390040 | 0.807270 | 5.487840e-50 | -8.615850e-47 |
| Msa1003240 | Msa1395580 | -0.812733 | 3.654173e-51 | -8.615850e-47 |
| Msa1003240 | Msa1395690 | 0.818765 | 1.652534e-52 | -8.615850e-47 |
| Msa1003240 | Msa1398110 | 0.818231 | 2.183669e-52 | -8.615850e-47 |
| Msa1003240 | Msa1407210 | 0.823699 | 1.203723e-53 | -8.615850e-47 |
| Msa1003240 | Msa1409060 | 0.802168 | 6.375572e-49 | -8.615850e-47 |
| Msa1003240 | Msa1421120 | 0.805703 | 1.174379e-49 | -8.615850e-47 |
| Msa0242390 | Msa1003240 | 0.840970 | 6.308833e-58 | -8.615850e-47 |
| Msa0266640 | Msa1003240 | 0.847057 | 1.471442e-59 | -8.615850e-47 |
| Msa0266650 | Msa1003240 | 0.832303 | 1.021145e-55 | -8.615850e-47 |
| Msa0274260 | Msa1003240 | 0.832139 | 1.120853e-55 | -8.615850e-47 |
| Msa0277280 | Msa1003240 | 0.800350 | 1.502186e-48 | -8.615850e-47 |
| Msa0298270 | Msa1003240 | 0.802410 | 5.685620e-49 | -8.615850e-47 |
| Msa0318370 | Msa1003240 | 0.805193 | 1.502040e-49 | -8.615850e-47 |
| Msa0491760 | Msa1003240 | 0.805188 | 1.506235e-49 | -8.615850e-47 |
| Msa0532670 | Msa1003240 | 0.801717 | 7.894217e-49 | -8.615850e-47 |
| Msa0532680 | Msa1003240 | 0.803413 | 3.527329e-49 | -8.615850e-47 |
| Msa0533510 | Msa1003240 | 0.846118 | 2.654423e-59 | -8.615850e-47 |
| Msa0533520 | Msa1003240 | 0.832471 | 9.278987e-56 | -8.615850e-47 |
| Msa0538450 | Msa1003240 | 0.821757 | 3.406923e-53 | -8.615850e-47 |
| Msa0538520 | Msa1003240 | 0.819167 | 1.338529e-52 | -8.615850e-47 |
| Msa0538530 | Msa1003240 | 0.801897 | 7.247384e-49 | -8.615850e-47 |
| Msa0589450 | Msa1003240 | 0.831779 | 1.375404e-55 | -8.615850e-47 |
| Msa0589720 | Msa1003240 | 0.814498 | 1.494421e-51 | -8.615850e-47 |
| Msa0589730 | Msa1003240 | 0.826465 | 2.673252e-54 | -8.615850e-47 |
| Msa0589740 | Msa1003240 | 0.809459 | 1.873089e-50 | -8.615850e-47 |
| Msa0589750 | Msa1003240 | 0.804772 | 1.840044e-49 | -8.615850e-47 |
| Msa0594320 | Msa1003240 | 0.830631 | 2.634406e-55 | -8.615850e-47 |
| Msa0859230 | Msa1003240 | 0.813777 | 2.155486e-51 | -8.615850e-47 |
| Msa0883610 | Msa1003240 | 0.802214 | 6.238109e-49 | -8.615850e-47 |
| Msa0883640 | Msa1003240 | 0.813028 | 3.148334e-51 | -8.615850e-47 |
| Msa0886370 | Msa1003240 | 0.800490 | 1.406347e-48 | -8.615850e-47 |
| Msa0896920 | Msa1003240 | 0.808694 | 2.731310e-50 | -8.615850e-47 |
| Msa0896990 | Msa1003240 | 0.824705 | 6.985320e-54 | -8.615850e-47 |
| Msa0902340 | Msa1003240 | 0.813151 | 2.959142e-51 | -8.615850e-47 |
| Msa0910570 | Msa1003240 | 0.815024 | 1.142532e-51 | -8.615850e-47 |
| Msa0910830 | Msa1003240 | 0.805427 | 1.342103e-49 | -8.615850e-47 |
| Msa0933580 | Msa1003240 | 0.819955 | 8.850515e-53 | -8.615850e-47 |
| Msa0933610 | Msa1003240 | 0.800667 | 1.294581e-48 | -8.615850e-47 |
| Msa0948460 | Msa1003240 | 0.805951 | 1.041837e-49 | -8.615850e-47 |
| Msa0951060 | Msa1003240 | 0.838032 | 3.657731e-57 | -8.615850e-47 |
| Msa0960090 | Msa1003240 | 0.814232 | 1.710756e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003240 | MtrunA17_Chr7g0214201 | 95.152 | 165 | 5 | 1 | 1 | 165 | 1 | 162 | 7.00e-116 | 325 |
| Msa1003240 | MtrunA17_Chr3g0131991 | 49.612 | 129 | 54 | 4 | 7 | 135 | 1 | 118 | 1.03e-31 | 111 |
| Msa1003240 | MtrunA17_Chr8g0386111 | 41.406 | 128 | 59 | 3 | 24 | 144 | 5 | 123 | 1.65e-26 | 97.8 |
| Msa1003240 | MtrunA17_Chr8g0386131 | 53.165 | 79 | 33 | 1 | 70 | 144 | 49 | 127 | 5.07e-24 | 91.7 |
| Msa1003240 | MtrunA17_Chr8g0386121 | 53.125 | 64 | 30 | 0 | 71 | 134 | 47 | 110 | 1.05e-20 | 82.0 |
| Msa1003240 | MtrunA17_Chr4g0036141 | 53.125 | 64 | 30 | 0 | 70 | 133 | 37 | 100 | 1.01e-17 | 75.1 |
| Msa1003240 | MtrunA17_Chr2g0311341 | 43.478 | 92 | 39 | 1 | 39 | 130 | 40 | 118 | 6.85e-17 | 72.8 |
| Msa1003240 | MtrunA17_Chr3g0127561 | 42.169 | 83 | 46 | 1 | 56 | 136 | 19 | 101 | 1.18e-16 | 71.6 |
| Msa1003240 | MtrunA17_Chr4g0070071 | 45.455 | 66 | 36 | 0 | 70 | 135 | 69 | 134 | 1.20e-16 | 72.8 |
| Msa1003240 | MtrunA17_Chr8g0358871 | 50.769 | 65 | 32 | 0 | 66 | 130 | 31 | 95 | 2.19e-16 | 70.9 |
| Msa1003240 | MtrunA17_Chr3g0139171 | 35.000 | 140 | 74 | 4 | 15 | 145 | 15 | 146 | 2.44e-16 | 72.4 |
| Msa1003240 | MtrunA17_Chr2g0301531 | 40.845 | 71 | 42 | 0 | 70 | 140 | 76 | 146 | 2.67e-16 | 72.0 |
| Msa1003240 | MtrunA17_Chr1g0156341 | 41.026 | 78 | 46 | 0 | 64 | 141 | 31 | 108 | 8.04e-16 | 70.1 |
| Msa1003240 | MtrunA17_Chr7g0266581 | 43.056 | 72 | 37 | 1 | 73 | 144 | 53 | 120 | 1.09e-15 | 69.3 |
| Msa1003240 | MtrunA17_Chr3g0121801 | 40.476 | 84 | 45 | 2 | 46 | 128 | 5 | 84 | 2.46e-15 | 67.4 |
| Msa1003240 | MtrunA17_Chr1g0178451 | 42.466 | 73 | 42 | 0 | 62 | 134 | 41 | 113 | 5.02e-15 | 67.8 |
| Msa1003240 | MtrunA17_Chr3g0145401 | 38.947 | 95 | 52 | 3 | 37 | 129 | 15 | 105 | 5.41e-15 | 67.0 |
| Msa1003240 | MtrunA17_Chr7g0276101 | 44.928 | 69 | 36 | 1 | 70 | 136 | 23 | 91 | 1.55e-14 | 65.9 |
| Msa1003240 | MtrunA17_Chr7g0266571 | 45.161 | 62 | 34 | 0 | 73 | 134 | 53 | 114 | 5.19e-14 | 65.1 |
| Msa1003240 | MtrunA17_Chr4g0000251 | 35.211 | 71 | 46 | 0 | 69 | 139 | 69 | 139 | 5.82e-14 | 65.9 |
| Msa1003240 | MtrunA17_Chr4g0036711 | 41.667 | 72 | 41 | 1 | 65 | 135 | 10 | 81 | 1.14e-13 | 62.8 |
| Msa1003240 | MtrunA17_Chr4g0036561 | 38.158 | 76 | 46 | 1 | 55 | 129 | 5 | 80 | 3.15e-13 | 62.0 |
| Msa1003240 | MtrunA17_Chr3g0121721 | 38.824 | 85 | 47 | 2 | 46 | 129 | 5 | 85 | 4.04e-13 | 61.6 |
| Msa1003240 | MtrunA17_Chr8g0346181 | 43.210 | 81 | 40 | 3 | 68 | 142 | 25 | 105 | 4.97e-13 | 62.0 |
| Msa1003240 | MtrunA17_Chr3g0121701 | 36.471 | 85 | 49 | 2 | 46 | 129 | 5 | 85 | 5.00e-13 | 61.6 |
| Msa1003240 | MtrunA17_Chr3g0121731 | 36.471 | 85 | 49 | 2 | 46 | 129 | 5 | 85 | 5.00e-13 | 61.6 |
| Msa1003240 | MtrunA17_Chr1g0147571 | 39.394 | 66 | 40 | 0 | 70 | 135 | 104 | 169 | 5.48e-13 | 64.3 |
| Msa1003240 | MtrunA17_Chr1g0179511 | 37.500 | 64 | 40 | 0 | 70 | 133 | 19 | 82 | 9.36e-13 | 61.6 |
| Msa1003240 | MtrunA17_Chr4g0036181 | 41.667 | 72 | 41 | 1 | 56 | 126 | 69 | 140 | 9.97e-13 | 62.4 |
| Msa1003240 | MtrunA17_Chr8g0358971 | 45.902 | 61 | 32 | 1 | 70 | 129 | 25 | 85 | 9.99e-13 | 60.8 |
| Msa1003240 | MtrunA17_Chr3g0130911 | 38.824 | 85 | 43 | 2 | 62 | 138 | 2 | 85 | 1.12e-12 | 60.8 |
| Msa1003240 | MtrunA17_Chr4g0036531 | 40.909 | 66 | 38 | 1 | 70 | 134 | 25 | 90 | 1.26e-12 | 60.5 |
| Msa1003240 | MtrunA17_Chr8g0359011 | 48.276 | 58 | 29 | 1 | 70 | 126 | 3 | 60 | 1.30e-12 | 59.7 |
| Msa1003240 | MtrunA17_Chr4g0036461 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 1.42e-12 | 60.5 |
| Msa1003240 | MtrunA17_Chr7g0264401 | 45.902 | 61 | 33 | 0 | 70 | 130 | 40 | 100 | 1.50e-12 | 60.8 |
| Msa1003240 | MtrunA17_Chr2g0281291 | 49.231 | 65 | 30 | 2 | 68 | 129 | 22 | 86 | 1.67e-12 | 60.1 |
| Msa1003240 | MtrunA17_Chr8g0358981 | 36.471 | 85 | 49 | 2 | 46 | 129 | 5 | 85 | 1.70e-12 | 60.1 |
| Msa1003240 | MtrunA17_Chr1g0199531 | 44.444 | 63 | 35 | 0 | 68 | 130 | 48 | 110 | 2.02e-12 | 60.5 |
| Msa1003240 | MtrunA17_Chr3g0121761 | 47.692 | 65 | 30 | 3 | 64 | 126 | 20 | 82 | 2.06e-12 | 60.1 |
| Msa1003240 | MtrunA17_Chr4g0036751 | 36.842 | 76 | 47 | 1 | 55 | 129 | 5 | 80 | 2.60e-12 | 59.3 |
| Msa1003240 | MtrunA17_Chr4g0036271 | 40.909 | 66 | 38 | 1 | 70 | 134 | 23 | 88 | 3.99e-12 | 59.3 |
| Msa1003240 | MtrunA17_Chr4g0036611 | 45.902 | 61 | 32 | 1 | 70 | 129 | 25 | 85 | 4.06e-12 | 59.3 |
| Msa1003240 | MtrunA17_Chr4g0011821 | 38.961 | 77 | 44 | 1 | 70 | 143 | 79 | 155 | 4.87e-12 | 60.8 |
| Msa1003240 | MtrunA17_Chr4g0036211 | 34.884 | 86 | 55 | 1 | 56 | 140 | 150 | 235 | 6.87e-12 | 61.6 |
| Msa1003240 | MtrunA17_Chr4g0036841 | 46.552 | 58 | 30 | 1 | 70 | 126 | 35 | 92 | 8.72e-12 | 58.5 |
| Msa1003240 | MtrunA17_Chr4g0036811 | 39.394 | 66 | 39 | 1 | 70 | 134 | 26 | 91 | 1.06e-11 | 58.2 |
| Msa1003240 | MtrunA17_Chr4g0036201 | 36.250 | 80 | 50 | 1 | 56 | 134 | 12 | 91 | 1.13e-11 | 58.2 |
| Msa1003240 | MtrunA17_Chr7g0264551 | 38.889 | 72 | 42 | 1 | 61 | 130 | 43 | 114 | 1.21e-11 | 58.5 |
| Msa1003240 | MtrunA17_Chr4g0036831 | 37.333 | 75 | 46 | 1 | 56 | 129 | 12 | 86 | 1.41e-11 | 57.8 |
| Msa1003240 | MtrunA17_Chr4g0036571 | 35.484 | 93 | 55 | 3 | 41 | 129 | 29 | 120 | 1.93e-11 | 58.2 |
| Msa1003240 | MtrunA17_Chr4g0036491 | 47.541 | 61 | 31 | 1 | 70 | 129 | 25 | 85 | 2.15e-11 | 57.4 |
| Msa1003240 | MtrunA17_Chr3g0121781 | 45.763 | 59 | 29 | 2 | 70 | 126 | 25 | 82 | 2.51e-11 | 57.0 |
| Msa1003240 | MtrunA17_Chr8g0358991 | 45.763 | 59 | 29 | 2 | 70 | 126 | 25 | 82 | 2.65e-11 | 57.0 |
| Msa1003240 | MtrunA17_Chr3g0139711 | 35.294 | 85 | 51 | 2 | 46 | 129 | 5 | 86 | 2.68e-11 | 57.0 |
| Msa1003240 | MtrunA17_Chr4g0036581 | 47.458 | 59 | 30 | 1 | 72 | 129 | 27 | 85 | 3.83e-11 | 56.6 |
| Msa1003240 | MtrunA17_Chr4g0036221 | 42.424 | 66 | 36 | 2 | 70 | 134 | 26 | 90 | 4.22e-11 | 56.6 |
| Msa1003240 | MtrunA17_Chr4g0036801 | 44.262 | 61 | 33 | 1 | 70 | 129 | 26 | 86 | 4.27e-11 | 56.6 |
| Msa1003240 | MtrunA17_Chr1g0181011 | 31.624 | 117 | 58 | 2 | 14 | 130 | 55 | 149 | 4.29e-11 | 58.2 |
| Msa1003240 | MtrunA17_Chr3g0139701 | 44.262 | 61 | 33 | 1 | 70 | 129 | 83 | 143 | 4.57e-11 | 57.8 |
| Msa1003240 | MtrunA17_Chr3g0121741 | 44.068 | 59 | 30 | 2 | 70 | 126 | 25 | 82 | 6.57e-11 | 55.8 |
| Msa1003240 | MtrunA17_Chr4g0036431 | 45.763 | 59 | 31 | 1 | 72 | 129 | 27 | 85 | 7.95e-11 | 55.8 |
| Msa1003240 | MtrunA17_Chr4g0036191 | 46.667 | 60 | 29 | 2 | 71 | 129 | 27 | 84 | 8.18e-11 | 55.8 |
| Msa1003240 | MtrunA17_Chr3g0121711 | 44.068 | 59 | 30 | 2 | 70 | 126 | 25 | 82 | 9.12e-11 | 55.5 |
| Msa1003240 | MtrunA17_Chr4g0036651 | 40.625 | 64 | 37 | 1 | 72 | 134 | 27 | 90 | 9.92e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003240 | AT5G50760.1 | 44.828 | 116 | 61 | 2 | 19 | 133 | 5 | 118 | 2.11e-23 | 91.3 |
| Msa1003240 | AT1G56150.1 | 47.887 | 71 | 37 | 0 | 60 | 130 | 28 | 98 | 4.81e-18 | 75.5 |
| Msa1003240 | AT5G20810.1 | 46.970 | 66 | 35 | 0 | 70 | 135 | 79 | 144 | 2.83e-17 | 74.7 |
| Msa1003240 | AT5G20810.2 | 46.970 | 66 | 35 | 0 | 70 | 135 | 79 | 144 | 4.13e-17 | 75.1 |
| Msa1003240 | AT3G43120.1 | 45.455 | 66 | 36 | 0 | 70 | 135 | 79 | 144 | 8.25e-17 | 73.6 |
| Msa1003240 | AT3G12830.1 | 44.048 | 84 | 44 | 2 | 49 | 130 | 28 | 110 | 3.47e-16 | 71.2 |
| Msa1003240 | AT2G46690.1 | 45.833 | 72 | 36 | 1 | 68 | 136 | 22 | 93 | 1.39e-15 | 69.3 |
| Msa1003240 | AT3G61900.1 | 41.379 | 87 | 39 | 2 | 68 | 142 | 28 | 114 | 1.76e-15 | 69.3 |
| Msa1003240 | AT1G16510.1 | 46.970 | 66 | 35 | 0 | 65 | 130 | 49 | 114 | 4.27e-15 | 68.9 |
| Msa1003240 | AT4G00880.1 | 40.964 | 83 | 45 | 2 | 56 | 136 | 16 | 96 | 1.13e-14 | 67.0 |
| Msa1003240 | AT4G34750.2 | 44.262 | 61 | 34 | 0 | 70 | 130 | 37 | 97 | 1.27e-14 | 67.4 |
| Msa1003240 | AT4G34750.1 | 44.262 | 61 | 34 | 0 | 70 | 130 | 37 | 97 | 1.27e-14 | 67.4 |
| Msa1003240 | AT1G75590.1 | 49.123 | 57 | 29 | 0 | 70 | 126 | 42 | 98 | 7.23e-14 | 65.9 |
| Msa1003240 | AT1G79130.1 | 36.111 | 108 | 56 | 2 | 26 | 133 | 17 | 111 | 1.34e-13 | 64.3 |
| Msa1003240 | AT5G10990.1 | 49.123 | 57 | 29 | 0 | 70 | 126 | 41 | 97 | 1.38e-13 | 64.7 |
| Msa1003240 | AT5G53590.1 | 42.466 | 73 | 37 | 1 | 70 | 137 | 46 | 118 | 1.72e-13 | 64.3 |
| Msa1003240 | AT1G19840.1 | 44.262 | 61 | 34 | 0 | 70 | 130 | 41 | 101 | 1.43e-12 | 62.4 |
| Msa1003240 | AT2G24400.1 | 40.230 | 87 | 50 | 1 | 52 | 136 | 46 | 132 | 2.03e-12 | 62.4 |
| Msa1003240 | AT4G31320.1 | 40.000 | 80 | 43 | 2 | 71 | 145 | 81 | 160 | 5.60e-12 | 61.2 |
| Msa1003240 | AT3G20220.1 | 38.235 | 68 | 41 | 1 | 65 | 131 | 42 | 109 | 9.63e-12 | 59.3 |
| Msa1003240 | AT2G37030.1 | 40.984 | 61 | 36 | 0 | 70 | 130 | 49 | 109 | 2.83e-11 | 58.2 |
| Msa1003240 | AT3G60690.1 | 38.542 | 96 | 52 | 3 | 58 | 148 | 74 | 167 | 3.94e-11 | 58.9 |
| Msa1003240 | AT3G51200.1 | 36.923 | 65 | 41 | 0 | 66 | 130 | 36 | 100 | 6.32e-11 | 56.6 |
| Msa1003240 | AT5G66260.1 | 36.364 | 66 | 41 | 1 | 70 | 135 | 34 | 98 | 6.57e-11 | 56.6 |
| Msa1003240 | AT2G36210.1 | 31.707 | 123 | 67 | 4 | 14 | 130 | 4 | 115 | 8.57e-11 | 57.0 |
Find 42 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCTTCTTAGCCCTTCC+AGG | 0.273002 | 7_1:-291415 | Msa1003240:CDS |
| CCTTCCCAAGGTTGTACTTT+TGG | 0.273068 | 7_1:-291455 | Msa1003240:CDS |
| ACCACAAACCTTTGCATTTG+AGG | 0.340829 | 7_1:+291626 | None:intergenic |
| GGAAAAGGGAACAAGAAAAT+AGG | 0.347522 | 7_1:-291839 | Msa1003240:CDS |
| GAAGAAGCTGAATCAGAATA+TGG | 0.364921 | 7_1:-291560 | Msa1003240:CDS |
| TTACAAAGTGTTGATGGAAA+TGG | 0.371199 | 7_1:-291489 | Msa1003240:CDS |
| TTATAGCTGCCAAGGACCTT+TGG | 0.404368 | 7_1:-291537 | Msa1003240:CDS |
| AAGAACATGAAGCAAGGAAA+AGG | 0.428717 | 7_1:-291854 | Msa1003240:CDS |
| ACCTCAAATGCAAAGGTTTG+TGG | 0.451149 | 7_1:-291627 | Msa1003240:CDS |
| GTTGTTTAAGACAATCATCC+TGG | 0.454314 | 7_1:+291397 | None:intergenic |
| GATTTGCTCCTTCTTGTCGT+TGG | 0.461730 | 7_1:+291728 | None:intergenic |
| TAAAAGACATCAACATTACA+AGG | 0.510903 | 7_1:+291509 | None:intergenic |
| AGAACATGAAGCAAGGAAAA+GGG | 0.512113 | 7_1:-291853 | Msa1003240:CDS |
| TGCAAGTCCATAGGAGGAGG+AGG | 0.512745 | 7_1:-291791 | Msa1003240:CDS |
| ATCATGGCCTAGTCTTCCGC+GGG | 0.516084 | 7_1:-291708 | Msa1003240:CDS |
| AAGGAAGAGCCAAAGGTCCT+TGG | 0.517712 | 7_1:+291528 | None:intergenic |
| CGACAAGAAGGAGCAAATCA+TGG | 0.519386 | 7_1:-291724 | Msa1003240:CDS |
| TAGACAAAAGAAAGTGGCCC+CGG | 0.522285 | 7_1:-291675 | Msa1003240:CDS |
| ACACCGAAAAGCATCCCTCC+GGG | 0.524201 | 7_1:+291657 | None:intergenic |
| TCAAGCAACATCTTGAACAA+AGG | 0.532123 | 7_1:+291581 | None:intergenic |
| ACGACCAAAAGTACAACCTT+GGG | 0.533998 | 7_1:+291451 | None:intergenic |
| AACGACCAAAAGTACAACCT+TGG | 0.538821 | 7_1:+291450 | None:intergenic |
| AGATGCAAGTCCATAGGAGG+AGG | 0.541895 | 7_1:-291794 | Msa1003240:CDS |
| TACACCGAAAAGCATCCCTC+CGG | 0.548704 | 7_1:+291656 | None:intergenic |
| AAGTCCATAGGAGGAGGAGG+AGG | 0.549753 | 7_1:-291788 | Msa1003240:CDS |
| AGAAAATAGACAAAAGAAAG+TGG | 0.550670 | 7_1:-291681 | Msa1003240:CDS |
| GAATATGGTTATAGCTGCCA+AGG | 0.552741 | 7_1:-291545 | Msa1003240:CDS |
| CAAAAGAAAGTGGCCCCGGA+GGG | 0.557663 | 7_1:-291671 | Msa1003240:CDS |
| CAGTGATTCCAACGACAAGA+AGG | 0.563887 | 7_1:-291736 | Msa1003240:CDS |
| TTTAAGACAATCATCCTGGA+AGG | 0.580942 | 7_1:+291401 | None:intergenic |
| TGGGAGAGATGCAAGTCCAT+AGG | 0.597578 | 7_1:-291800 | Msa1003240:CDS |
| AATCATGGCCTAGTCTTCCG+CGG | 0.600149 | 7_1:-291709 | Msa1003240:CDS |
| GAGAGATGCAAGTCCATAGG+AGG | 0.601664 | 7_1:-291797 | Msa1003240:CDS |
| TTAAGACAATCATCCTGGAA+GGG | 0.611880 | 7_1:+291402 | None:intergenic |
| ACATTACAAGGAAGAGCCAA+AGG | 0.626356 | 7_1:+291521 | None:intergenic |
| ACGTTGGACCTCAAATGCAA+AGG | 0.634178 | 7_1:-291634 | Msa1003240:CDS |
| ATTGGCAAGAACATGAAGCA+AGG | 0.634830 | 7_1:-291860 | Msa1003240:CDS |
| GATAACGAAGCTCCTTCCCA+AGG | 0.635029 | 7_1:-291467 | Msa1003240:CDS |
| ACAAAAGAAAGTGGCCCCGG+AGG | 0.644682 | 7_1:-291672 | Msa1003240:CDS |
| CCAAAAGTACAACCTTGGGA+AGG | 0.674764 | 7_1:+291455 | None:intergenic |
| CACCGAAAAGCATCCCTCCG+GGG | 0.706013 | 7_1:+291658 | None:intergenic |
| TCATGGCCTAGTCTTCCGCG+GGG | 0.775767 | 7_1:-291707 | Msa1003240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAAAATAGACAAAAGAAAG+TGG | - | chr7_1:291576-291595 | Msa1003240:CDS | 25.0% |
| ! | TAAAAGACATCAACATTACA+AGG | + | chr7_1:291751-291770 | None:intergenic | 25.0% |
| !!! | TGTCTTTTACAAAGTGTTGA+TGG | - | chr7_1:291762-291781 | Msa1003240:CDS | 30.0% |
| !! | TTACAAAGTGTTGATGGAAA+TGG | - | chr7_1:291768-291787 | Msa1003240:CDS | 30.0% |
| AAGAACATGAAGCAAGGAAA+AGG | - | chr7_1:291403-291422 | Msa1003240:CDS | 35.0% | |
| AGAACATGAAGCAAGGAAAA+GGG | - | chr7_1:291404-291423 | Msa1003240:CDS | 35.0% | |
| GGAAAAGGGAACAAGAAAAT+AGG | - | chr7_1:291418-291437 | Msa1003240:CDS | 35.0% | |
| TCAAGCAACATCTTGAACAA+AGG | + | chr7_1:291679-291698 | None:intergenic | 35.0% | |
| GAAGAAGCTGAATCAGAATA+TGG | - | chr7_1:291697-291716 | Msa1003240:CDS | 35.0% | |
| TTAAGACAATCATCCTGGAA+GGG | + | chr7_1:291858-291877 | None:intergenic | 35.0% | |
| ! | TTTAAGACAATCATCCTGGA+AGG | + | chr7_1:291859-291878 | None:intergenic | 35.0% |
| ! | GTTGTTTAAGACAATCATCC+TGG | + | chr7_1:291863-291882 | None:intergenic | 35.0% |
| ATTGGCAAGAACATGAAGCA+AGG | - | chr7_1:291397-291416 | Msa1003240:CDS | 40.0% | |
| TAGGCCTCATAACAAAAACG+TGG | - | chr7_1:291437-291456 | Msa1003240:CDS | 40.0% | |
| AGGCCTCATAACAAAAACGT+GGG | - | chr7_1:291438-291457 | Msa1003240:CDS | 40.0% | |
| !! | TCTCCCACGTTTTTGTTATG+AGG | + | chr7_1:291444-291463 | None:intergenic | 40.0% |
| ACCTCAAATGCAAAGGTTTG+TGG | - | chr7_1:291630-291649 | Msa1003240:CDS | 40.0% | |
| ACCACAAACCTTTGCATTTG+AGG | + | chr7_1:291634-291653 | None:intergenic | 40.0% | |
| GAATATGGTTATAGCTGCCA+AGG | - | chr7_1:291712-291731 | Msa1003240:CDS | 40.0% | |
| ACATTACAAGGAAGAGCCAA+AGG | + | chr7_1:291739-291758 | None:intergenic | 40.0% | |
| ! | ACGACCAAAAGTACAACCTT+GGG | + | chr7_1:291809-291828 | None:intergenic | 40.0% |
| ! | AACGACCAAAAGTACAACCT+TGG | + | chr7_1:291810-291829 | None:intergenic | 40.0% |
| CAGTGATTCCAACGACAAGA+AGG | - | chr7_1:291521-291540 | Msa1003240:CDS | 45.0% | |
| ! | GATTTGCTCCTTCTTGTCGT+TGG | + | chr7_1:291532-291551 | None:intergenic | 45.0% |
| CGACAAGAAGGAGCAAATCA+TGG | - | chr7_1:291533-291552 | Msa1003240:CDS | 45.0% | |
| TAGACAAAAGAAAGTGGCCC+CGG | - | chr7_1:291582-291601 | Msa1003240:CDS | 45.0% | |
| ACGTTGGACCTCAAATGCAA+AGG | - | chr7_1:291623-291642 | Msa1003240:CDS | 45.0% | |
| TTATAGCTGCCAAGGACCTT+TGG | - | chr7_1:291720-291739 | Msa1003240:CDS | 45.0% | |
| ! | CCAAAAGTACAACCTTGGGA+AGG | + | chr7_1:291805-291824 | None:intergenic | 45.0% |
| ! | CCTTCCCAAGGTTGTACTTT+TGG | - | chr7_1:291802-291821 | Msa1003240:CDS | 45.0% |
| ATCATCTTCTTAGCCCTTCC+AGG | - | chr7_1:291842-291861 | Msa1003240:CDS | 45.0% | |
| TGGGAGAGATGCAAGTCCAT+AGG | - | chr7_1:291457-291476 | Msa1003240:CDS | 50.0% | |
| GAGAGATGCAAGTCCATAGG+AGG | - | chr7_1:291460-291479 | Msa1003240:CDS | 50.0% | |
| AGATGCAAGTCCATAGGAGG+AGG | - | chr7_1:291463-291482 | Msa1003240:CDS | 50.0% | |
| ! | AATCATGGCCTAGTCTTCCG+CGG | - | chr7_1:291548-291567 | Msa1003240:CDS | 50.0% |
| ! | TGTCTATTTTCTTCGCCCCG+CGG | + | chr7_1:291568-291587 | None:intergenic | 50.0% |
| !! | TACACCGAAAAGCATCCCTC+CGG | + | chr7_1:291604-291623 | None:intergenic | 50.0% |
| !! | GGATGCTTTTCGGTGTACGT+TGG | - | chr7_1:291607-291626 | Msa1003240:CDS | 50.0% |
| AAGGAAGAGCCAAAGGTCCT+TGG | + | chr7_1:291732-291751 | None:intergenic | 50.0% | |
| GATAACGAAGCTCCTTCCCA+AGG | - | chr7_1:291790-291809 | Msa1003240:CDS | 50.0% | |
| TGCAAGTCCATAGGAGGAGG+AGG | - | chr7_1:291466-291485 | Msa1003240:CDS | 55.0% | |
| AAGTCCATAGGAGGAGGAGG+AGG | - | chr7_1:291469-291488 | Msa1003240:CDS | 55.0% | |
| ! | ATCATGGCCTAGTCTTCCGC+GGG | - | chr7_1:291549-291568 | Msa1003240:CDS | 55.0% |
| ACAAAAGAAAGTGGCCCCGG+AGG | - | chr7_1:291585-291604 | Msa1003240:CDS | 55.0% | |
| CAAAAGAAAGTGGCCCCGGA+GGG | - | chr7_1:291586-291605 | Msa1003240:CDS | 55.0% | |
| !! | ACACCGAAAAGCATCCCTCC+GGG | + | chr7_1:291603-291622 | None:intergenic | 55.0% |
| TCCATAGGAGGAGGAGGAGG+AGG | - | chr7_1:291472-291491 | Msa1003240:CDS | 60.0% | |
| TCCTCCTCCTCCTCCTCCTA+TGG | + | chr7_1:291476-291495 | None:intergenic | 60.0% | |
| ! | TCATGGCCTAGTCTTCCGCG+GGG | - | chr7_1:291550-291569 | Msa1003240:CDS | 60.0% |
| !! | CACCGAAAAGCATCCCTCCG+GGG | + | chr7_1:291602-291621 | None:intergenic | 60.0% |
| TCTTCGCCCCGCGGAAGACT+AGG | + | chr7_1:291559-291578 | None:intergenic | 65.0% | |
| ! | GGCCCCGGAGGGATGCTTTT+CGG | - | chr7_1:291597-291616 | Msa1003240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 291391 | 291888 | 291391 | ID=Msa1003240;Name=Msa1003240 |
| chr7_1 | mRNA | 291391 | 291888 | 291391 | ID=Msa1003240-mRNA-1;Parent=Msa1003240;Name=Msa1003240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|165 |
| chr7_1 | exon | 291391 | 291888 | 291391 | ID=Msa1003240-mRNA-1:exon:70;Parent=Msa1003240-mRNA-1 |
| chr7_1 | CDS | 291391 | 291888 | 291391 | ID=Msa1003240-mRNA-1:cds;Parent=Msa1003240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
