Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031650 | Msa0985260 | 0.827189 | 1.794356e-54 | -8.615850e-47 |
| Msa0036580 | Msa0985260 | 0.866717 | 2.324565e-65 | -8.615850e-47 |
| Msa0048950 | Msa0985260 | 0.828766 | 7.488358e-55 | -8.615850e-47 |
| Msa0059880 | Msa0985260 | 0.852976 | 3.240822e-61 | -8.615850e-47 |
| Msa0085710 | Msa0985260 | 0.824874 | 6.370863e-54 | -8.615850e-47 |
| Msa0093530 | Msa0985260 | 0.834371 | 3.115436e-56 | -8.615850e-47 |
| Msa0629030 | Msa0985260 | 0.808035 | 3.774422e-50 | -8.615850e-47 |
| Msa0645100 | Msa0985260 | 0.806648 | 7.428698e-50 | -8.615850e-47 |
| Msa0645120 | Msa0985260 | 0.843112 | 1.711592e-58 | -8.615850e-47 |
| Msa0667640 | Msa0985260 | 0.819619 | 1.055959e-52 | -8.615850e-47 |
| Msa0668210 | Msa0985260 | 0.841997 | 3.384426e-58 | -8.615850e-47 |
| Msa0668220 | Msa0985260 | 0.827502 | 1.509883e-54 | -8.615850e-47 |
| Msa0668230 | Msa0985260 | 0.838559 | 2.676565e-57 | -8.615850e-47 |
| Msa0672780 | Msa0985260 | 0.845834 | 3.172336e-59 | -8.615850e-47 |
| Msa0684590 | Msa0985260 | 0.831583 | 1.537097e-55 | -8.615850e-47 |
| Msa0684600 | Msa0985260 | 0.842580 | 2.370321e-58 | -8.615850e-47 |
| Msa0684720 | Msa0985260 | 0.802128 | 6.496927e-49 | -8.615850e-47 |
| Msa0711240 | Msa0985260 | 0.824694 | 7.025019e-54 | -8.615850e-47 |
| Msa0715260 | Msa0985260 | 0.831864 | 1.310993e-55 | -8.615850e-47 |
| Msa0716600 | Msa0985260 | 0.840872 | 6.691782e-58 | -8.615850e-47 |
| Msa0721260 | Msa0985260 | 0.843009 | 1.823584e-58 | -8.615850e-47 |
| Msa0728520 | Msa0985260 | 0.815972 | 7.030220e-52 | -8.615850e-47 |
| Msa0735340 | Msa0985260 | 0.811870 | 5.637708e-51 | -8.615850e-47 |
| Msa0738660 | Msa0985260 | 0.808402 | 3.151564e-50 | -8.615850e-47 |
| Msa0747500 | Msa0985260 | 0.841370 | 4.952932e-58 | -8.615850e-47 |
| Msa0753410 | Msa0985260 | 0.824653 | 7.182039e-54 | -8.615850e-47 |
| Msa0757240 | Msa0985260 | 0.831973 | 1.231956e-55 | -8.615850e-47 |
| Msa0758000 | Msa0985260 | 0.816695 | 4.843172e-52 | -8.615850e-47 |
| Msa0758150 | Msa0985260 | 0.818402 | 1.996939e-52 | -8.615850e-47 |
| Msa0776340 | Msa0985260 | 0.806106 | 9.661366e-50 | -8.615850e-47 |
| Msa0776540 | Msa0985260 | 0.815175 | 1.057551e-51 | -8.615850e-47 |
| Msa0783580 | Msa0985260 | 0.809027 | 2.318229e-50 | -8.615850e-47 |
| Msa0793060 | Msa0985260 | -0.810441 | 1.151086e-50 | -8.615850e-47 |
| Msa0795330 | Msa0985260 | 0.841084 | 5.886156e-58 | -8.615850e-47 |
| Msa0798230 | Msa0985260 | 0.834535 | 2.833606e-56 | -8.615850e-47 |
| Msa0817100 | Msa0985260 | 0.829102 | 6.211960e-55 | -8.615850e-47 |
| Msa0819110 | Msa0985260 | 0.810274 | 1.250803e-50 | -8.615850e-47 |
| Msa0836740 | Msa0985260 | 0.830085 | 3.582649e-55 | -8.615850e-47 |
| Msa0126960 | Msa0985260 | 0.836002 | 1.207560e-56 | -8.615850e-47 |
| Msa0129270 | Msa0985260 | 0.837087 | 6.390656e-57 | -8.615850e-47 |
| Msa0139270 | Msa0985260 | 0.875310 | 3.407852e-68 | -8.615850e-47 |
| Msa0150910 | Msa0985260 | 0.832894 | 7.285393e-56 | -8.615850e-47 |
| Msa0171740 | Msa0985260 | 0.823164 | 1.604723e-53 | -8.615850e-47 |
| Msa0176620 | Msa0985260 | 0.868288 | 7.297185e-66 | -8.615850e-47 |
| Msa0183920 | Msa0985260 | 0.804823 | 1.795133e-49 | -8.615850e-47 |
| Msa0184320 | Msa0985260 | 0.809955 | 1.465142e-50 | -8.615850e-47 |
| Msa0199860 | Msa0985260 | 0.838820 | 2.290633e-57 | -8.615850e-47 |
| Msa0200090 | Msa0985260 | 0.800415 | 1.457001e-48 | -8.615850e-47 |
| Msa0202060 | Msa0985260 | 0.807583 | 4.709750e-50 | -8.615850e-47 |
| Msa0207970 | Msa0985260 | 0.832441 | 9.436651e-56 | -8.615850e-47 |
| Msa0222070 | Msa0985260 | -0.805980 | 1.026905e-49 | -8.615850e-47 |
| Msa0222120 | Msa0985260 | -0.806733 | 7.128323e-50 | -8.615850e-47 |
| Msa0225910 | Msa0985260 | 0.809616 | 1.733177e-50 | -8.615850e-47 |
| Msa0227290 | Msa0985260 | -0.815073 | 1.114282e-51 | -8.615850e-47 |
| Msa0234120 | Msa0985260 | 0.829396 | 5.268713e-55 | -8.615850e-47 |
| Msa0375550 | Msa0985260 | 0.807496 | 4.914496e-50 | -8.615850e-47 |
| Msa0378390 | Msa0985260 | 0.820112 | 8.145907e-53 | -8.615850e-47 |
| Msa0398690 | Msa0985260 | 0.845432 | 4.076305e-59 | -8.615850e-47 |
| Msa0424240 | Msa0985260 | 0.845172 | 4.792346e-59 | -8.615850e-47 |
| Msa0424300 | Msa0985260 | 0.803360 | 3.618313e-49 | -8.615850e-47 |
| Msa0427740 | Msa0985260 | 0.827778 | 1.296188e-54 | -8.615850e-47 |
| Msa0427970 | Msa0985260 | 0.828613 | 8.157763e-55 | -8.615850e-47 |
| Msa0445530 | Msa0985260 | 0.812468 | 4.176633e-51 | -8.615850e-47 |
| Msa0476420 | Msa0985260 | 0.808937 | 2.422737e-50 | -8.615850e-47 |
| Msa0478400 | Msa0985260 | 0.841101 | 5.825924e-58 | -8.615850e-47 |
| Msa0482020 | Msa0985260 | -0.804250 | 2.364013e-49 | -8.615850e-47 |
| Msa0985250 | Msa0985260 | 0.927287 | 1.449194e-91 | -8.615850e-47 |
| Msa0985260 | Msa0985290 | 0.900122 | 1.004352e-77 | -8.615850e-47 |
| Msa0985260 | Msa0985380 | 0.805005 | 1.644904e-49 | -8.615850e-47 |
| Msa0985260 | Msa0985700 | 0.811617 | 6.401045e-51 | -8.615850e-47 |
| Msa0985260 | Msa0987550 | 0.824089 | 9.747633e-54 | -8.615850e-47 |
| Msa0985260 | Msa0996940 | 0.825947 | 3.550586e-54 | -8.615850e-47 |
| Msa0985260 | Msa1037060 | 0.805710 | 1.170760e-49 | -8.615850e-47 |
| Msa0985260 | Msa1040330 | 0.824328 | 8.564958e-54 | -8.615850e-47 |
| Msa0985260 | Msa1046220 | 0.822178 | 2.721268e-53 | -8.615850e-47 |
| Msa0985260 | Msa1077940 | 0.820212 | 7.728420e-53 | -8.615850e-47 |
| Msa0985260 | Msa1083100 | 0.859335 | 4.441464e-63 | -8.615850e-47 |
| Msa0985260 | Msa1085820 | 0.803467 | 3.438536e-49 | -8.615850e-47 |
| Msa0985260 | Msa1099640 | 0.809634 | 1.717019e-50 | -8.615850e-47 |
| Msa0985260 | Msa1100560 | 0.803886 | 2.814671e-49 | -8.615850e-47 |
| Msa0985260 | Msa1109890 | 0.822890 | 1.859562e-53 | -8.615850e-47 |
| Msa0985260 | Msa1127940 | 0.830923 | 2.234377e-55 | -8.615850e-47 |
| Msa0985260 | Msa1138600 | -0.810542 | 1.094717e-50 | -8.615850e-47 |
| Msa0985260 | Msa1164800 | 0.800728 | 1.257692e-48 | -8.615850e-47 |
| Msa0985260 | Msa1165860 | 0.831349 | 1.755581e-55 | -8.615850e-47 |
| Msa0985260 | Msa1173290 | 0.837177 | 6.062605e-57 | -8.615850e-47 |
| Msa0985260 | Msa1209390 | -0.801048 | 1.081893e-48 | -8.615850e-47 |
| Msa0985260 | Msa1209650 | -0.802622 | 5.141298e-49 | -8.615850e-47 |
| Msa0985260 | Msa1211160 | 0.830426 | 2.956301e-55 | -8.615850e-47 |
| Msa0985260 | Msa1219780 | 0.837519 | 4.955891e-57 | -8.615850e-47 |
| Msa0985260 | Msa1221170 | 0.849120 | 3.964684e-60 | -8.615850e-47 |
| Msa0985260 | Msa1222030 | 0.817240 | 3.654247e-52 | -8.615850e-47 |
| Msa0985260 | Msa1235760 | -0.817027 | 4.080563e-52 | -8.615850e-47 |
| Msa0985260 | Msa1235770 | -0.819646 | 1.040964e-52 | -8.615850e-47 |
| Msa0985260 | Msa1265500 | 0.844721 | 6.344035e-59 | -8.615850e-47 |
| Msa0985260 | Msa1266710 | 0.836894 | 7.160279e-57 | -8.615850e-47 |
| Msa0985260 | Msa1298740 | -0.806001 | 1.016877e-49 | -8.615850e-47 |
| Msa0985260 | Msa1299310 | 0.846764 | 1.769548e-59 | -8.615850e-47 |
| Msa0985260 | Msa1323030 | 0.808349 | 3.235958e-50 | -8.615850e-47 |
| Msa0985260 | Msa1323150 | 0.818867 | 1.566719e-52 | -8.615850e-47 |
| Msa0985260 | Msa1323160 | 0.804625 | 1.974255e-49 | -8.615850e-47 |
| Msa0985260 | Msa1329770 | 0.812517 | 4.074148e-51 | -8.615850e-47 |
| Msa0985260 | Msa1335500 | 0.831311 | 1.794196e-55 | -8.615850e-47 |
| Msa0985260 | Msa1349420 | 0.819786 | 9.672124e-53 | -8.615850e-47 |
| Msa0985260 | Msa1350490 | 0.813199 | 2.888512e-51 | -8.615850e-47 |
| Msa0985260 | Msa1361500 | 0.806637 | 7.467481e-50 | -8.615850e-47 |
| Msa0985260 | Msa1370930 | 0.826201 | 3.089677e-54 | -8.615850e-47 |
| Msa0985260 | Msa1373560 | 0.807001 | 6.255767e-50 | -8.615850e-47 |
| Msa0985260 | Msa1376520 | 0.804040 | 2.614210e-49 | -8.615850e-47 |
| Msa0985260 | Msa1378950 | 0.819097 | 1.388762e-52 | -8.615850e-47 |
| Msa0985260 | Msa1379250 | 0.851598 | 7.997660e-61 | -8.615850e-47 |
| Msa0985260 | Msa1390040 | 0.840622 | 7.781543e-58 | -8.615850e-47 |
| Msa0985260 | Msa1395690 | 0.868370 | 6.870098e-66 | -8.615850e-47 |
| Msa0985260 | Msa1396550 | 0.803235 | 3.839958e-49 | -8.615850e-47 |
| Msa0985260 | Msa1398110 | 0.838893 | 2.194136e-57 | -8.615850e-47 |
| Msa0985260 | Msa1400700 | 0.808676 | 2.755471e-50 | -8.615850e-47 |
| Msa0985260 | Msa1406230 | -0.805728 | 1.160328e-49 | -8.615850e-47 |
| Msa0985260 | Msa1407210 | 0.825119 | 5.575641e-54 | -8.615850e-47 |
| Msa0985260 | Msa1418190 | 0.806478 | 8.068015e-50 | -8.615850e-47 |
| Msa0242390 | Msa0985260 | 0.814744 | 1.318011e-51 | -8.615850e-47 |
| Msa0243990 | Msa0985260 | 0.806036 | 9.996185e-50 | -8.615850e-47 |
| Msa0257930 | Msa0985260 | 0.809110 | 2.224506e-50 | -8.615850e-47 |
| Msa0263620 | Msa0985260 | -0.810442 | 1.150479e-50 | -8.615850e-47 |
| Msa0266640 | Msa0985260 | 0.836010 | 1.201799e-56 | -8.615850e-47 |
| Msa0266650 | Msa0985260 | 0.809057 | 2.284035e-50 | -8.615850e-47 |
| Msa0274260 | Msa0985260 | 0.818067 | 2.378298e-52 | -8.615850e-47 |
| Msa0275570 | Msa0985260 | 0.827196 | 1.788031e-54 | -8.615850e-47 |
| Msa0298270 | Msa0985260 | 0.802312 | 5.955660e-49 | -8.615850e-47 |
| Msa0301460 | Msa0985260 | -0.826175 | 3.133459e-54 | -8.615850e-47 |
| Msa0318370 | Msa0985260 | 0.824347 | 8.477614e-54 | -8.615850e-47 |
| Msa0336640 | Msa0985260 | 0.846025 | 2.813388e-59 | -8.615850e-47 |
| Msa0338900 | Msa0985260 | -0.809308 | 2.017757e-50 | -8.615850e-47 |
| Msa0356200 | Msa0985260 | 0.813414 | 2.590790e-51 | -8.615850e-47 |
| Msa0356250 | Msa0985260 | 0.820812 | 5.627968e-53 | -8.615850e-47 |
| Msa0356410 | Msa0985260 | 0.802474 | 5.515246e-49 | -8.615850e-47 |
| Msa0484240 | Msa0985260 | 0.802109 | 6.558221e-49 | -8.615850e-47 |
| Msa0485290 | Msa0985260 | 0.806046 | 9.947867e-50 | -8.615850e-47 |
| Msa0493710 | Msa0985260 | 0.816809 | 4.567562e-52 | -8.615850e-47 |
| Msa0518570 | Msa0985260 | 0.828801 | 7.345835e-55 | -8.615850e-47 |
| Msa0520430 | Msa0985260 | 0.811020 | 8.626002e-51 | -8.615850e-47 |
| Msa0533510 | Msa0985260 | 0.832043 | 1.183677e-55 | -8.615850e-47 |
| Msa0533520 | Msa0985260 | 0.809093 | 2.243508e-50 | -8.615850e-47 |
| Msa0538520 | Msa0985260 | 0.802300 | 5.989865e-49 | -8.615850e-47 |
| Msa0538650 | Msa0985260 | 0.827761 | 1.308898e-54 | -8.615850e-47 |
| Msa0548760 | Msa0985260 | 0.834292 | 3.261816e-56 | -8.615850e-47 |
| Msa0548970 | Msa0985260 | 0.805958 | 1.038351e-49 | -8.615850e-47 |
| Msa0589720 | Msa0985260 | 0.819055 | 1.419891e-52 | -8.615850e-47 |
| Msa0589730 | Msa0985260 | 0.808158 | 3.553272e-50 | -8.615850e-47 |
| Msa0589740 | Msa0985260 | 0.800872 | 1.175307e-48 | -8.615850e-47 |
| Msa0589750 | Msa0985260 | 0.801459 | 8.916178e-49 | -8.615850e-47 |
| Msa0594320 | Msa0985260 | 0.801483 | 8.814453e-49 | -8.615850e-47 |
| Msa0859230 | Msa0985260 | 0.816772 | 4.655353e-52 | -8.615850e-47 |
| Msa0883610 | Msa0985260 | 0.926695 | 3.291675e-91 | -8.615850e-47 |
| Msa0883640 | Msa0985260 | 0.811658 | 6.270688e-51 | -8.615850e-47 |
| Msa0886370 | Msa0985260 | 0.856615 | 2.853375e-62 | -8.615850e-47 |
| Msa0896920 | Msa0985260 | 0.815073 | 1.114554e-51 | -8.615850e-47 |
| Msa0896990 | Msa0985260 | 0.838194 | 3.323180e-57 | -8.615850e-47 |
| Msa0902340 | Msa0985260 | 0.814259 | 1.687617e-51 | -8.615850e-47 |
| Msa0910570 | Msa0985260 | 0.890975 | 6.056804e-74 | -8.615850e-47 |
| Msa0910590 | Msa0985260 | 0.884967 | 1.218760e-71 | -8.615850e-47 |
| Msa0910830 | Msa0985260 | 0.819270 | 1.268671e-52 | -8.615850e-47 |
| Msa0913500 | Msa0985260 | 0.829848 | 4.091554e-55 | -8.615850e-47 |
| Msa0932900 | Msa0985260 | 0.806481 | 8.055494e-50 | -8.615850e-47 |
| Msa0932910 | Msa0985260 | 0.809243 | 2.083158e-50 | -8.615850e-47 |
| Msa0932930 | Msa0985260 | 0.842898 | 1.951814e-58 | -8.615850e-47 |
| Msa0948430 | Msa0985260 | 0.876024 | 1.940037e-68 | -8.615850e-47 |
| Msa0948460 | Msa0985260 | 0.865602 | 5.244137e-65 | -8.615850e-47 |
| Msa0951060 | Msa0985260 | 0.854315 | 1.336045e-61 | -8.615850e-47 |
| Msa0960090 | Msa0985260 | 0.813259 | 2.801655e-51 | -8.615850e-47 |
| Msa0962260 | Msa0985260 | 0.822006 | 2.983284e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 4 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGGATTTGAGGAATATAA+TGG | 0.331678 | 6_4:+31471725 | Msa0985260:intron |
| AAGAGAACACAGTGCAAAGC+AGG | 0.462698 | 6_4:+31471753 | Msa0985260:CDS |
| AGAGTGCATGGAAATTGCTT+AGG | 0.486728 | 6_4:-31471825 | None:intergenic |
| ATCAATTCACAATTATATAG+CGG | 0.637629 | 6_4:+31471783 | Msa0985260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTAAAATATTATCAT+TGG | + | chr6_4:31471446-31471465 | Msa0985260:intron | 10.0% |
| !! | AATATCTTTCATTAAAAAAA+TGG | - | chr6_4:31471676-31471695 | None:intergenic | 10.0% |
| !!! | ATCTTTTAAAATATTATCAT+TGG | + | chr6_4:31471446-31471465 | Msa0985260:intron | 10.0% |
| !! | AATATCTTTCATTAAAAAAA+TGG | - | chr6_4:31471676-31471695 | None:intergenic | 10.0% |
| !! | TGTTAAACTAAAACTTTAAA+AGG | - | chr6_4:31471412-31471431 | None:intergenic | 15.0% |
| !!! | TTGTTTGATTTAAAATTTCA+AGG | + | chr6_4:31471595-31471614 | Msa0985260:intron | 15.0% |
| !!! | TGTTTGATTTAAAATTTCAA+GGG | + | chr6_4:31471596-31471615 | Msa0985260:intron | 15.0% |
| !! | TGTTAAACTAAAACTTTAAA+AGG | - | chr6_4:31471412-31471431 | None:intergenic | 15.0% |
| !!! | TTGTTTGATTTAAAATTTCA+AGG | + | chr6_4:31471595-31471614 | Msa0985260:intron | 15.0% |
| !!! | TGTTTGATTTAAAATTTCAA+GGG | + | chr6_4:31471596-31471615 | Msa0985260:intron | 15.0% |
| !!! | TTTTCCAAATAGGTATTTAT+CGG | - | chr6_4:31471206-31471225 | None:intergenic | 20.0% |
| !! | AATATGATCATAATCTATAG+TGG | - | chr6_4:31471523-31471542 | None:intergenic | 20.0% |
| !! | TTATAGAATTTAGCTAGAAA+AGG | + | chr6_4:31471541-31471560 | Msa0985260:intron | 20.0% |
| !! | ATCAATTCACAATTATATAG+CGG | + | chr6_4:31471783-31471802 | Msa0985260:CDS | 20.0% |
| !!! | TTTTCCAAATAGGTATTTAT+CGG | - | chr6_4:31471206-31471225 | None:intergenic | 20.0% |
| !! | AATATGATCATAATCTATAG+TGG | - | chr6_4:31471523-31471542 | None:intergenic | 20.0% |
| !! | TTATAGAATTTAGCTAGAAA+AGG | + | chr6_4:31471541-31471560 | Msa0985260:intron | 20.0% |
| !! | ATCAATTCACAATTATATAG+CGG | + | chr6_4:31471783-31471802 | Msa0985260:CDS | 20.0% |
| ! | TTTCCAAATAGGTATTTATC+GGG | - | chr6_4:31471205-31471224 | None:intergenic | 25.0% |
| !!! | TACCTATTTGGAAAAGTATT+TGG | + | chr6_4:31471211-31471230 | Msa0985260:intron | 25.0% |
| !! | TACCAAATACTTTTCCAAAT+AGG | - | chr6_4:31471216-31471235 | None:intergenic | 25.0% |
| !! | TTATAGAGCAACTTTTCAAA+AGG | - | chr6_4:31471351-31471370 | None:intergenic | 25.0% |
| ! | TCTAGCTAAAACTGTTTATT+AGG | - | chr6_4:31471631-31471650 | None:intergenic | 25.0% |
| ! | GCTAGATTGTATAATGTTTA+AGG | + | chr6_4:31471645-31471664 | Msa0985260:intron | 25.0% |
| !! | ATATACTTTTGTAGGATTTG+AGG | + | chr6_4:31471715-31471734 | Msa0985260:intron | 25.0% |
| !! | AAATGCGATTTTGTCATATA+CGG | + | chr6_4:31472010-31472029 | Msa0985260:three_prime_UTR | 25.0% |
| ! | TTTCCAAATAGGTATTTATC+GGG | - | chr6_4:31471205-31471224 | None:intergenic | 25.0% |
| !!! | TACCTATTTGGAAAAGTATT+TGG | + | chr6_4:31471211-31471230 | Msa0985260:intron | 25.0% |
| !! | TACCAAATACTTTTCCAAAT+AGG | - | chr6_4:31471216-31471235 | None:intergenic | 25.0% |
| !! | TTATAGAGCAACTTTTCAAA+AGG | - | chr6_4:31471351-31471370 | None:intergenic | 25.0% |
| ! | TCTAGCTAAAACTGTTTATT+AGG | - | chr6_4:31471631-31471650 | None:intergenic | 25.0% |
| ! | GCTAGATTGTATAATGTTTA+AGG | + | chr6_4:31471645-31471664 | Msa0985260:intron | 25.0% |
| !! | ATATACTTTTGTAGGATTTG+AGG | + | chr6_4:31471715-31471734 | Msa0985260:intron | 25.0% |
| !! | AAATGCGATTTTGTCATATA+CGG | + | chr6_4:31472010-31472029 | Msa0985260:three_prime_UTR | 25.0% |
| TAACCCGATAAATACCTATT+TGG | + | chr6_4:31471199-31471218 | Msa0985260:intron | 30.0% | |
| ! | AAAGGCACAACACTTTATTT+AGG | - | chr6_4:31471333-31471352 | None:intergenic | 30.0% |
| AATAAAGATGAGAATGCAGA+AGG | + | chr6_4:31471480-31471499 | Msa0985260:intron | 30.0% | |
| ! | ATGTGTGCATATACTTTTGT+AGG | + | chr6_4:31471707-31471726 | Msa0985260:intron | 30.0% |
| GTAGGATTTGAGGAATATAA+TGG | + | chr6_4:31471725-31471744 | Msa0985260:intron | 30.0% | |
| ATACTATCATAAACCACCAT+GGG | - | chr6_4:31471088-31471107 | None:intergenic | 30.0% | |
| TAACCCGATAAATACCTATT+TGG | + | chr6_4:31471199-31471218 | Msa0985260:intron | 30.0% | |
| ! | AAAGGCACAACACTTTATTT+AGG | - | chr6_4:31471333-31471352 | None:intergenic | 30.0% |
| AATAAAGATGAGAATGCAGA+AGG | + | chr6_4:31471480-31471499 | Msa0985260:intron | 30.0% | |
| ! | ATGTGTGCATATACTTTTGT+AGG | + | chr6_4:31471707-31471726 | Msa0985260:intron | 30.0% |
| GTAGGATTTGAGGAATATAA+TGG | + | chr6_4:31471725-31471744 | Msa0985260:intron | 30.0% | |
| TGGTTTATGATAGTATCCCA+AGG | + | chr6_4:31471092-31471111 | Msa0985260:intron | 35.0% | |
| ! | TTTTTGTGTGTGTTGTACGT+AGG | - | chr6_4:31471128-31471147 | None:intergenic | 35.0% |
| AAGTTGCTCTATAAACCTTG+TGG | + | chr6_4:31471357-31471376 | Msa0985260:intron | 35.0% | |
| TCTATAAACCTTGTGGAAGT+AGG | + | chr6_4:31471364-31471383 | Msa0985260:intron | 35.0% | |
| CATTTAAACCTACTTCCACA+AGG | - | chr6_4:31471375-31471394 | None:intergenic | 35.0% | |
| ! | ATTTTCTGAATCAGAGTGCA+TGG | - | chr6_4:31471840-31471859 | None:intergenic | 35.0% |
| GATACTATCATAAACCACCA+TGG | - | chr6_4:31471089-31471108 | None:intergenic | 35.0% | |
| TGGTTTATGATAGTATCCCA+AGG | + | chr6_4:31471092-31471111 | Msa0985260:intron | 35.0% | |
| ! | TTTTTGTGTGTGTTGTACGT+AGG | - | chr6_4:31471128-31471147 | None:intergenic | 35.0% |
| AAGTTGCTCTATAAACCTTG+TGG | + | chr6_4:31471357-31471376 | Msa0985260:intron | 35.0% | |
| TCTATAAACCTTGTGGAAGT+AGG | + | chr6_4:31471364-31471383 | Msa0985260:intron | 35.0% | |
| CATTTAAACCTACTTCCACA+AGG | - | chr6_4:31471375-31471394 | None:intergenic | 35.0% | |
| ! | ATTTTCTGAATCAGAGTGCA+TGG | - | chr6_4:31471840-31471859 | None:intergenic | 35.0% |
| ! | CGTAGGAAGAAGTATACCTT+GGG | - | chr6_4:31471111-31471130 | None:intergenic | 40.0% |
| ! | ACGTAGGAAGAAGTATACCT+TGG | - | chr6_4:31471112-31471131 | None:intergenic | 40.0% |
| ATCTATAGTGGTTGACCTGA+TGG | - | chr6_4:31471511-31471530 | None:intergenic | 40.0% | |
| AGAGTGCATGGAAATTGCTT+AGG | - | chr6_4:31471828-31471847 | None:intergenic | 40.0% | |
| ! | CGTAGGAAGAAGTATACCTT+GGG | - | chr6_4:31471111-31471130 | None:intergenic | 40.0% |
| ! | ACGTAGGAAGAAGTATACCT+TGG | - | chr6_4:31471112-31471131 | None:intergenic | 40.0% |
| ATCTATAGTGGTTGACCTGA+TGG | - | chr6_4:31471511-31471530 | None:intergenic | 40.0% | |
| AGAGTGCATGGAAATTGCTT+AGG | - | chr6_4:31471828-31471847 | None:intergenic | 40.0% | |
| AAGAGAACACAGTGCAAAGC+AGG | + | chr6_4:31471753-31471772 | Msa0985260:CDS | 45.0% | |
| AAGAGAACACAGTGCAAAGC+AGG | + | chr6_4:31471753-31471772 | Msa0985260:CDS | 45.0% | |
| ATGCAGAAGGTGAGTCCATC+AGG | + | chr6_4:31471493-31471512 | Msa0985260:intron | 50.0% | |
| ATGCAGAAGGTGAGTCCATC+AGG | + | chr6_4:31471493-31471512 | Msa0985260:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31471088 | 31472053 | 31471088 | ID=Msa0985260;Name=Msa0985260 |
| chr6_4 | mRNA | 31471088 | 31472053 | 31471088 | ID=Msa0985260-mRNA-1;Parent=Msa0985260;Name=Msa0985260-mRNA-1;_AED=0.35;_eAED=0.36;_QI=0|0|0.5|1|0|0.5|2|124|68 |
| chr6_4 | exon | 31471088 | 31471093 | 31471088 | ID=Msa0985260-mRNA-1:exon:8439;Parent=Msa0985260-mRNA-1 |
| chr6_4 | exon | 31471729 | 31472053 | 31471729 | ID=Msa0985260-mRNA-1:exon:8440;Parent=Msa0985260-mRNA-1 |
| chr6_4 | CDS | 31471088 | 31471093 | 31471088 | ID=Msa0985260-mRNA-1:cds;Parent=Msa0985260-mRNA-1 |
| chr6_4 | CDS | 31471729 | 31471929 | 31471729 | ID=Msa0985260-mRNA-1:cds;Parent=Msa0985260-mRNA-1 |
| chr6_4 | three_prime_UTR | 31471930 | 31472053 | 31471930 | ID=Msa0985260-mRNA-1:three_prime_utr;Parent=Msa0985260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
