AlfalfaGEDB | Msa0049780

M. sativa cultivar zhongmu-4 / Msa0049780

KEGG: K13519
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019374 GO:0019375 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046486 GO:0071617 GO:0071704 GO:0071944 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509
PFAM: PF03062.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049780	KAG6428692.1	82.677	254	40	1	1	250	74	327	5.28e-157	452

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049780	sp\|F4IDU4\|MBOA1_ARATH	49.045	314	92	7	1	250	70	379	1.60e-72	231

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049780	A0A498JNN7	77.778	270	40	1	1	250	72	341	8.31e-151	436

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0049780	0.802176	6.352554e-49	-8.615850e-47
Msa0012940	Msa0049780	0.813042	3.126171e-51	-8.615850e-47
Msa0033880	Msa0049780	0.805384	1.370344e-49	-8.615850e-47
Msa0039250	Msa0049780	0.828742	7.592310e-55	-8.615850e-47
Msa0043500	Msa0049780	0.822880	1.869349e-53	-8.615850e-47
Msa0043650	Msa0049780	0.812558	3.991974e-51	-8.615850e-47
Msa0047250	Msa0049780	0.800415	1.456758e-48	-8.615850e-47
Msa0049780	Msa0052870	0.810283	1.245192e-50	-8.615850e-47
Msa0049780	Msa0054820	0.819769	9.758614e-53	-8.615850e-47
Msa0049780	Msa0055070	0.800099	1.689349e-48	-8.615850e-47
Msa0049780	Msa0057590	0.809134	2.198733e-50	-8.615850e-47
Msa0049780	Msa0069600	0.808502	3.001056e-50	-8.615850e-47
Msa0049780	Msa0070430	0.860269	2.323399e-63	-8.615850e-47
Msa0049780	Msa0077540	0.832410	9.603124e-56	-8.615850e-47
Msa0049780	Msa0093850	0.810806	9.599281e-51	-8.615850e-47
Msa0049780	Msa0096580	0.800478	1.414355e-48	-8.615850e-47
Msa0049780	Msa0097950	0.800158	1.643168e-48	-8.615850e-47
Msa0049780	Msa0098470	0.801816	7.533214e-49	-8.615850e-47
Msa0049780	Msa0100160	0.813716	2.223086e-51	-8.615850e-47
Msa0049780	Msa0108870	0.805046	1.612511e-49	-8.615850e-47
Msa0049780	Msa0116790	0.825739	3.977403e-54	-8.615850e-47
Msa0049780	Msa0118000	0.804145	2.486197e-49	-8.615850e-47
Msa0049780	Msa0127850	0.811089	8.334353e-51	-8.615850e-47
Msa0049780	Msa0130110	0.816240	6.123150e-52	-8.615850e-47
Msa0049780	Msa0130240	0.805959	1.037872e-49	-8.615850e-47
Msa0049780	Msa0133720	0.823645	1.239162e-53	-8.615850e-47
Msa0049780	Msa0133820	0.828039	1.121823e-54	-8.615850e-47
Msa0049780	Msa0138360	0.822716	2.040862e-53	-8.615850e-47
Msa0049780	Msa0142460	0.803736	3.023635e-49	-8.615850e-47
Msa0049780	Msa0146080	0.816619	5.036412e-52	-8.615850e-47
Msa0049780	Msa0147980	0.817736	2.824383e-52	-8.615850e-47
Msa0049780	Msa0171850	0.805265	1.450887e-49	-8.615850e-47
Msa0049780	Msa0174000	0.817468	3.246400e-52	-8.615850e-47
Msa0049780	Msa0181230	0.815278	1.003635e-51	-8.615850e-47
Msa0049780	Msa0187030	0.821976	3.032204e-53	-8.615850e-47
Msa0049780	Msa0197520	0.814222	1.719461e-51	-8.615850e-47
Msa0049780	Msa0198520	0.816327	5.854524e-52	-8.615850e-47
Msa0049780	Msa0198530	0.831794	1.363598e-55	-8.615850e-47
Msa0049780	Msa0230370	0.801409	9.127617e-49	-8.615850e-47
Msa0049780	Msa0236070	0.801332	9.464362e-49	-8.615850e-47
Msa0049780	Msa0307570	0.808898	2.470392e-50	-8.615850e-47
Msa0049780	Msa0341690	0.811503	6.775685e-51	-8.615850e-47
Msa0049780	Msa0342290	0.805371	1.378698e-49	-8.615850e-47
Msa0049780	Msa0346990	0.873771	1.135426e-67	-8.615850e-47
Msa0049780	Msa0372420	0.807576	4.724121e-50	-8.615850e-47
Msa0049780	Msa0378970	0.807056	6.089391e-50	-8.615850e-47
Msa0049780	Msa0387880	-0.818661	1.744811e-52	-8.615850e-47
Msa0049780	Msa0392200	0.883985	2.820774e-71	-8.615850e-47
Msa0049780	Msa0421300	-0.801926	7.148556e-49	-8.615850e-47
Msa0049780	Msa0431770	0.840414	8.823226e-58	-8.615850e-47
Msa0049780	Msa0434570	0.802875	4.558751e-49	-8.615850e-47
Msa0049780	Msa0434770	0.806511	7.939736e-50	-8.615850e-47
Msa0049780	Msa0461590	0.824866	6.399480e-54	-8.615850e-47
Msa0049780	Msa0462880	0.807847	4.138017e-50	-8.615850e-47
Msa0049780	Msa0478580	0.812597	3.912518e-51	-8.615850e-47
Msa0049780	Msa0479200	0.800867	1.178077e-48	-8.615850e-47
Msa0049780	Msa0480780	0.817501	3.191721e-52	-8.615850e-47
Msa0049780	Msa0483740	0.800038	1.738144e-48	-8.615850e-47
Msa0049780	Msa0487780	0.861344	1.095829e-63	-8.615850e-47
Msa0049780	Msa0510290	0.820022	8.540894e-53	-8.615850e-47
Msa0049780	Msa0514610	0.811270	7.612770e-51	-8.615850e-47
Msa0049780	Msa0518030	0.808767	2.634982e-50	-8.615850e-47
Msa0049780	Msa0527190	0.815058	1.123127e-51	-8.615850e-47
Msa0049780	Msa0578090	0.815119	1.088658e-51	-8.615850e-47
Msa0049780	Msa0581690	0.827701	1.352611e-54	-8.615850e-47
Msa0049780	Msa0583500	0.840932	6.455175e-58	-8.615850e-47
Msa0049780	Msa0618950	0.807609	4.649100e-50	-8.615850e-47
Msa0049780	Msa0640500	0.808710	2.709075e-50	-8.615850e-47
Msa0049780	Msa0646130	0.817103	3.922688e-52	-8.615850e-47
Msa0049780	Msa0652690	0.810996	8.731044e-51	-8.615850e-47
Msa0049780	Msa0659550	0.800086	1.699640e-48	-8.615850e-47
Msa0049780	Msa0710270	0.839741	1.321546e-57	-8.615850e-47
Msa0049780	Msa0716410	0.807541	4.806251e-50	-8.615850e-47
Msa0049780	Msa0716860	0.815952	7.102316e-52	-8.615850e-47
Msa0049780	Msa0739080	0.800206	1.606744e-48	-8.615850e-47
Msa0049780	Msa0742510	0.813572	2.392211e-51	-8.615850e-47
Msa0049780	Msa0744090	0.875954	2.050604e-68	-8.615850e-47
Msa0049780	Msa0744100	0.851296	9.734756e-61	-8.615850e-47
Msa0049780	Msa0751260	0.812252	4.654253e-51	-8.615850e-47
Msa0049780	Msa0756530	0.800577	1.350443e-48	-8.615850e-47
Msa0049780	Msa0756930	0.802045	6.759073e-49	-8.615850e-47
Msa0049780	Msa0757800	0.830175	3.405358e-55	-8.615850e-47
Msa0049780	Msa0779260	0.802613	5.161920e-49	-8.615850e-47
Msa0049780	Msa0779550	0.816424	5.570823e-52	-8.615850e-47
Msa0049780	Msa0788110	0.846269	2.414382e-59	-8.615850e-47
Msa0049780	Msa0788120	0.863224	2.899286e-64	-8.615850e-47
Msa0049780	Msa0795070	0.801540	8.581597e-49	-8.615850e-47
Msa0049780	Msa0799000	0.822584	2.190669e-53	-8.615850e-47
Msa0049780	Msa0819540	0.823772	1.157108e-53	-8.615850e-47
Msa0049780	Msa0825270	0.849089	4.043322e-60	-8.615850e-47
Msa0049780	Msa0825280	0.880568	4.930659e-70	-8.615850e-47
Msa0049780	Msa0837410	0.807513	4.871769e-50	-8.615850e-47
Msa0049780	Msa0851470	0.876171	1.725454e-68	-8.615850e-47
Msa0049780	Msa0864420	0.825129	5.545300e-54	-8.615850e-47
Msa0049780	Msa0873860	0.802408	5.691646e-49	-8.615850e-47
Msa0049780	Msa0888940	0.825527	4.464364e-54	-8.615850e-47
Msa0049780	Msa0896240	0.803646	3.156976e-49	-8.615850e-47
Msa0049780	Msa0903780	0.811856	5.678005e-51	-8.615850e-47
Msa0049780	Msa0906690	0.804167	2.459920e-49	-8.615850e-47
Msa0049780	Msa0926670	0.806211	9.183626e-50	-8.615850e-47
Msa0049780	Msa0929950	0.822330	2.510078e-53	-8.615850e-47
Msa0049780	Msa0939000	0.813662	2.284958e-51	-8.615850e-47
Msa0049780	Msa0944660	0.818862	1.570338e-52	-8.615850e-47
Msa0049780	Msa0945240	0.815773	7.787095e-52	-8.615850e-47
Msa0049780	Msa1004420	0.822391	2.429175e-53	-8.615850e-47
Msa0049780	Msa1010070	0.819497	1.125751e-52	-8.615850e-47
Msa0049780	Msa1034720	0.801609	8.305490e-49	-8.615850e-47
Msa0049780	Msa1068100	0.808492	3.015953e-50	-8.615850e-47
Msa0049780	Msa1069820	0.808157	3.555138e-50	-8.615850e-47
Msa0049780	Msa1070390	0.816934	4.280508e-52	-8.615850e-47
Msa0049780	Msa1072600	0.814838	1.256146e-51	-8.615850e-47
Msa0049780	Msa1082290	0.813039	3.132141e-51	-8.615850e-47
Msa0049780	Msa1113590	0.809314	2.011541e-50	-8.615850e-47
Msa0049780	Msa1127590	0.801040	1.086227e-48	-8.615850e-47
Msa0049780	Msa1129690	0.805764	1.140174e-49	-8.615850e-47
Msa0049780	Msa1157570	0.803414	3.526325e-49	-8.615850e-47
Msa0049780	Msa1158230	0.801865	7.360292e-49	-8.615850e-47
Msa0049780	Msa1162080	0.826333	2.872833e-54	-8.615850e-47
Msa0049780	Msa1169720	0.819490	1.130356e-52	-8.615850e-47
Msa0049780	Msa1181170	-0.818673	1.733366e-52	-8.615850e-47
Msa0049780	Msa1188560	0.812127	4.957304e-51	-8.615850e-47
Msa0049780	Msa1198880	0.806248	9.020728e-50	-8.615850e-47
Msa0049780	Msa1208170	0.814061	1.865933e-51	-8.615850e-47
Msa0049780	Msa1219000	0.830232	3.297034e-55	-8.615850e-47
Msa0049780	Msa1235380	0.820332	7.252306e-53	-8.615850e-47
Msa0049780	Msa1282500	0.800788	1.222850e-48	-8.615850e-47
Msa0049780	Msa1286550	0.832551	8.860372e-56	-8.615850e-47
Msa0049780	Msa1304860	0.800370	1.488064e-48	-8.615850e-47
Msa0049780	Msa1328640	0.808350	3.234349e-50	-8.615850e-47
Msa0049780	Msa1332760	0.813045	3.121929e-51	-8.615850e-47
Msa0049780	Msa1344310	0.806342	8.617723e-50	-8.615850e-47
Msa0049780	Msa1359560	0.804584	2.013994e-49	-8.615850e-47
Msa0049780	Msa1362020	0.801670	8.071708e-49	-8.615850e-47
Msa0049780	Msa1365760	0.827451	1.553580e-54	-8.615850e-47
Msa0049780	Msa1371520	0.816840	4.494665e-52	-8.615850e-47
Msa0049780	Msa1373820	0.810364	1.196092e-50	-8.615850e-47
Msa0049780	Msa1385810	0.820927	5.296456e-53	-8.615850e-47
Msa0049780	Msa1409260	0.828948	6.767523e-55	-8.615850e-47
Msa0049780	Msa1421460	0.819202	1.314172e-52	-8.615850e-47
Msa0049780	Msa1422840	0.805045	1.613680e-49	-8.615850e-47
Msa0049780	Msa1433220	0.803392	3.562531e-49	-8.615850e-47
Msa0049780	Msa1446780	0.801148	1.032222e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049780	MtrunA17_Chr4g0057271	73.548	310	22	3	1	250	72	381	3.04e-141	404

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049780	AT1G12640.1	49.045	314	92	7	1	250	70	379	1.63e-73	231
Msa0049780	AT1G63050.1	73.759	141	24	1	1	141	73	200	8.17e-71	224

Find 114 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCACTTTCTTTCTTGGATT+TGG	0.199879	1_2:+3285256	Msa0049780:CDS
GGTATCATCACTTTCTTTCT+TGG	0.213299	1_2:+3285250	Msa0049780:CDS
TTTCTTGTTCCTATGGTTCT+TGG	0.214151	1_2:+3285193	Msa0049780:exon
TTCGATCTGGCAGGCCTTCC+AGG	0.216933	1_2:-3288176	None:intergenic
CACAGACCGTTAGTGCTATT+TGG	0.218362	1_2:+3287297	Msa0049780:CDS
CCTATTGTTATCATCCTTCT+TGG	0.234661	1_2:+3288140	Msa0049780:three_prime_UTR
GGTTCTTGGTTATGCTTCTA+TGG	0.244748	1_2:+3285207	Msa0049780:CDS
AACAGTGCAGTTATTCTCTT+TGG	0.270236	1_2:+3288222	Msa0049780:three_prime_UTR
ACCATTCCCTTAAGTTTCTT+TGG	0.272219	1_2:+3285074	Msa0049780:five_prime_UTR
TTTCTCTCTTATCTTTCATT+TGG	0.281170	1_2:+3285151	Msa0049780:five_prime_UTR
ATTGAGATATAACGAAGTTT+TGG	0.284592	1_2:-3284936	None:intergenic
ACTTGTTTGCATTAATTGTT+TGG	0.308449	1_2:-3288508	None:intergenic
TTGAAATCAAATTAGGATAG+TGG	0.315943	1_2:+3288250	Msa0049780:three_prime_UTR
TACCAAATCATGCACCATTT+AGG	0.318199	1_2:-3288615	None:intergenic
TGTTGTGGAAGTCACTTTGC+TGG	0.320070	1_2:+3285618	Msa0049780:CDS
GCTCTGTCCCAACGCGGCTT+TGG	0.320400	1_2:-3286720	None:intergenic
TTCTATTATCATCTCTGGCT+TGG	0.327718	1_2:+3286668	Msa0049780:CDS
CTGGCTTGGGTTTCAGTGGC+TGG	0.334935	1_2:+3286682	Msa0049780:CDS
GTTGGAAATATTATTTCATT+TGG	0.336497	1_2:+3286631	Msa0049780:CDS
ATCCTAAATGGTGCATGATT+TGG	0.339163	1_2:+3288613	Msa0049780:three_prime_UTR
AAATGAAGGATTATCTTGAT+TGG	0.344307	1_2:+3285652	Msa0049780:CDS
CAGTCAGCATTGATGATTGC+TGG	0.350154	1_2:+3287655	Msa0049780:CDS
CATGAAACTCTTGCCTCATA+TGG	0.355168	1_2:+3288090	Msa0049780:exon
TCTATTATCATCTCTGGCTT+GGG	0.358985	1_2:+3286669	Msa0049780:CDS
GATTCCATGGCCGCTTCAAT+TGG	0.370021	1_2:+3285008	Msa0049780:five_prime_UTR
CTGTCCCAACGCGGCTTTGG+TGG	0.377191	1_2:-3286717	None:intergenic
GAAGCTTCTATTATCATCTC+TGG	0.389427	1_2:+3286663	Msa0049780:CDS
AGCTCCTTTAGTCTTGGAAA+TGG	0.391446	1_2:+3288335	Msa0049780:three_prime_UTR
CTCTCCACCAAAGCCGCGTT+GGG	0.392120	1_2:+3286713	Msa0049780:CDS
AGTGATTATTGAAGAAATGT+TGG	0.392740	1_2:+3288438	Msa0049780:three_prime_UTR
CAGATGGCAATTTAATTAAA+CGG	0.392771	1_2:-3285569	None:intergenic
GCGGCGGAGTAGAAGTGTTT+AGG	0.394399	1_2:-3285118	None:intergenic
GTTTCCACGGGGTTCAGCTC+TGG	0.399134	1_2:+3288294	Msa0049780:three_prime_UTR
AATTGTTGAGATTCAATTCA+AGG	0.400428	1_2:-3284881	None:intergenic
GGCTGGATCTTCAGTTTCCA+CGG	0.419594	1_2:+3288281	Msa0049780:three_prime_UTR
GATGGATTGTTGAAAGAAGA+AGG	0.421814	1_2:+3285522	Msa0049780:CDS
AAAATACACGCTTCCATATG+AGG	0.423665	1_2:-3288103	None:intergenic
TGTAACAGCTCCTTTAGTCT+TGG	0.425070	1_2:+3288329	Msa0049780:three_prime_UTR
CAAAACGCCAAAGAAACTTA+AGG	0.435452	1_2:-3285081	None:intergenic
GGCTCGTTGTGCTGTGTGGT+TGG	0.435782	1_2:-3284966	None:intergenic
CCAAGAAGGATGATAACAAT+AGG	0.436962	1_2:-3288140	None:intergenic
CTTTAGTCTTGGAAATGGTT+CGG	0.437912	1_2:+3288340	Msa0049780:three_prime_UTR
TTATTTCAGGGGTTGTATCC+TGG	0.439877	1_2:+3287613	Msa0049780:intron
TTGGATGACACAATCTTTGA+AGG	0.447631	1_2:+3284791	None:intergenic
TTGGGTTACCAGTATATGTC+TGG	0.449963	1_2:+3286597	Msa0049780:intron
GTGATTATTGAAGAAATGTT+GGG	0.454579	1_2:+3288439	Msa0049780:three_prime_UTR
GCTGGATCTTCAGTTTCCAC+GGG	0.460572	1_2:+3288282	Msa0049780:three_prime_UTR
TGAAATCAAATTAGGATAGT+GGG	0.462375	1_2:+3288251	Msa0049780:three_prime_UTR
GGATAGTGGGAGAGGCTGGC+TGG	0.465788	1_2:+3288264	Msa0049780:three_prime_UTR
AATGACGTGATTACCCTTAC+CGG	0.469655	1_2:-3284843	None:intergenic
CCATCTGTTATTGAGTATGT+TGG	0.475781	1_2:+3285585	Msa0049780:CDS
ATTACATGAGCGGTGATGCT+TGG	0.476065	1_2:+3285302	Msa0049780:CDS
ATTAGGATAGTGGGAGAGGC+TGG	0.476278	1_2:+3288260	Msa0049780:three_prime_UTR
AAAACGCCAAAGAAACTTAA+GGG	0.477071	1_2:-3285080	None:intergenic
TGCCAGATCGAAAGCTCAAA+AGG	0.484458	1_2:+3288187	Msa0049780:three_prime_UTR
ATCTCTGGCTTGGGTTTCAG+TGG	0.486889	1_2:+3286678	Msa0049780:CDS
TCAAGTTGAAGCTCCATGGC+TGG	0.489644	1_2:-3284987	None:intergenic
AACACCAATTGAAGCGGCCA+TGG	0.492799	1_2:-3285012	None:intergenic
GCAAGTAACTGAAGAAATCC+TGG	0.496211	1_2:-3287272	None:intergenic
ACAGCACAACGAGCCAGCCA+TGG	0.498916	1_2:+3284974	Msa0049780:five_prime_UTR
GATTATCTTGATTGGACTGA+AGG	0.506375	1_2:+3285660	Msa0049780:CDS
CACTTCTACTCCGCCGCCGT+TGG	0.513594	1_2:+3285124	Msa0049780:five_prime_UTR
TCAAATTAGGATAGTGGGAG+AGG	0.513746	1_2:+3288256	Msa0049780:three_prime_UTR
GTTAGAAACATCAATGTTGA+CGG	0.514603	1_2:+3288406	Msa0049780:three_prime_UTR
GGAGCTTCAACTTGATTCCA+TGG	0.514766	1_2:+3284995	Msa0049780:five_prime_UTR
GAAGGTGGAATCGATGCAAC+TGG	0.519690	1_2:+3285328	Msa0049780:CDS
CCTCTCCACCAAAGCCGCGT+TGG	0.529654	1_2:+3286712	Msa0049780:CDS
ACAAAGAATATAATGTATCC+AGG	0.530643	1_2:-3287631	None:intergenic
CGAACCATTTCCAAGACTAA+AGG	0.533406	1_2:-3288339	None:intergenic
TGTGACTGTGATGGCCGGTA+AGG	0.537110	1_2:+3284829	Msa0049780:five_prime_UTR
GCAGAGAAGGAAGCGGAGAA+CGG	0.537707	1_2:-3285042	None:intergenic
ATCCTGGCTTCTTCCCACTC+TGG	0.537883	1_2:-3287256	None:intergenic
ATCCAGAGTGGGAAGAAGCC+AGG	0.538068	1_2:+3287254	Msa0049780:CDS
CTTGGTAAAGTGATCAAGCC+TGG	0.542234	1_2:+3288158	Msa0049780:three_prime_UTR
ATGATAGGCTTATCCAGAGT+GGG	0.543235	1_2:+3287243	Msa0049780:CDS
ACTTGAATATTCCACACAGC+TGG	0.544819	1_2:-3286795	None:intergenic
GCTTGATCACTTTACCAAGA+AGG	0.546312	1_2:-3288154	None:intergenic
AGCGGTGATGCTTGGAAAGA+AGG	0.547981	1_2:+3285310	Msa0049780:CDS
TGGTGGCGACGAAGCAGAGA+AGG	0.551712	1_2:-3285055	None:intergenic
CGACGAAGCAGAGAAGGAAG+CGG	0.551927	1_2:-3285049	None:intergenic
AAGGAAGCGGAGAACGGCGA+CGG	0.558050	1_2:-3285036	None:intergenic
AAACTCACAATGGCGAAGCC+AGG	0.558480	1_2:-3286823	None:intergenic
GTAAAGTGATCAAGCCTGGA+AGG	0.564430	1_2:+3288162	Msa0049780:three_prime_UTR
GAAGCATAACCAAGAACCAT+AGG	0.569556	1_2:-3285202	None:intergenic
TTAGAAACATCAATGTTGAC+GGG	0.569766	1_2:+3288407	Msa0049780:three_prime_UTR
TGTGCAATTAATTATAACGA+TGG	0.570026	1_2:+3285504	Msa0049780:CDS
GCCAAAGAAACTTAAGGGAA+TGG	0.572165	1_2:-3285075	None:intergenic
GGAATCAAGTTGAAGCTCCA+TGG	0.572533	1_2:-3284991	None:intergenic
GGCTGGCTCGTTGTGCTGTG+TGG	0.573177	1_2:-3284970	None:intergenic
GATGATAACAATAGGTAGAA+CGG	0.584053	1_2:-3288132	None:intergenic
CCAACGCGGCTTTGGTGGAG+AGG	0.585335	1_2:-3286712	None:intergenic
GGAATATTCAAGTCAGCACC+TGG	0.589501	1_2:+3286805	Msa0049780:CDS
CCAACATACTCAATAACAGA+TGG	0.592112	1_2:-3285585	None:intergenic
CACATGCCAAATAGCACTAA+CGG	0.598601	1_2:-3287303	None:intergenic
CTTGATTGGACTGAAGGACA+AGG	0.599300	1_2:+3285666	Msa0049780:CDS
TTGATGATTGCTGGTTCCAG+AGG	0.599868	1_2:+3287664	Msa0049780:CDS
TTGATTGGACTGAAGGACAA+GGG	0.609966	1_2:+3285667	Msa0049780:CDS
GTGACTGTGATGGCCGGTAA+GGG	0.610894	1_2:+3284830	Msa0049780:five_prime_UTR
GACGGAAACACCAATTGAAG+CGG	0.615322	1_2:-3285018	None:intergenic
GTAATTTATCGTCAGAGATG+TGG	0.617829	1_2:+3285229	Msa0049780:CDS
TATGATAGGCTTATCCAGAG+TGG	0.639089	1_2:+3287242	Msa0049780:CDS
CAAACTGTGACTGTGATGGC+CGG	0.642447	1_2:+3284824	Msa0049780:five_prime_UTR
AAAGAAACTTAAGGGAATGG+TGG	0.647769	1_2:-3285072	None:intergenic
TGATTGGACTGAAGGACAAG+GGG	0.649786	1_2:+3285668	Msa0049780:CDS
ACAACAAACTGTGACTGTGA+TGG	0.655950	1_2:+3284820	Msa0049780:five_prime_UTR
CTGGATCTTCAGTTTCCACG+GGG	0.658077	1_2:+3288283	Msa0049780:three_prime_UTR
TGTCATGTTTATTACATGAG+CGG	0.662354	1_2:+3285292	Msa0049780:CDS
AAAGCTCAAAAGGAAGAGTG+AGG	0.671201	1_2:+3288197	Msa0049780:three_prime_UTR
AAGTGTTTAGGAAGACGACC+AGG	0.672673	1_2:-3285106	None:intergenic
GGTGATGCTTGGAAAGAAGG+TGG	0.677292	1_2:+3285313	Msa0049780:CDS
AATAGCACTAACGGTCTGTG+TGG	0.678558	1_2:-3287294	None:intergenic
TGTCTGGCTTAACAGCACGT+TGG	0.696548	1_2:+3286613	Msa0049780:CDS
CAGTTGTAATTCCAGCTGTG+TGG	0.697153	1_2:+3286784	Msa0049780:CDS
AAAACCAGAGCTGAACCCCG+TGG	0.727745	1_2:-3288298	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATCAGCATAAATTAAATT+GGG	-	chr1_2:3285780-3285799	None:intergenic	15.0%
!!	TTTATATCGGAAAAATAAAA+AGG	+	chr1_2:3285957-3285976	Msa0049780:intron	15.0%
!!	TTATATCGGAAAAATAAAAA+GGG	+	chr1_2:3285958-3285977	Msa0049780:intron	15.0%
!!!	TTTTTGTATAAACGATTTAT+TGG	+	chr1_2:3286999-3287018	Msa0049780:intron	15.0%
!!!	ATTTTGACATTTTTATTTCA+GGG	+	chr1_2:3287601-3287620	Msa0049780:intron	15.0%
!!	ATGTTATGTTAATGTTAATC+TGG	+	chr1_2:3285692-3285711	Msa0049780:intron	20.0%
!!	CTTATCAGCATAAATTAAAT+TGG	-	chr1_2:3285781-3285800	None:intergenic	20.0%
!!!	AAGGATAGTCTTTTTTATAT+CGG	+	chr1_2:3285944-3285963	Msa0049780:intron	20.0%
!!	GTTGGAAATATTATTTCATT+TGG	+	chr1_2:3286631-3286650	Msa0049780:CDS	20.0%
!!!	GAAGAAAGATTATTTTAACA+TGG	-	chr1_2:3287026-3287045	None:intergenic	20.0%
!!!	TTTTTGTAGATGTTTATGAT+AGG	+	chr1_2:3287228-3287247	Msa0049780:intron	20.0%
!!!	CTTTCTATTTCTACTATATT+TGG	+	chr1_2:3287370-3287389	Msa0049780:intron	20.0%
!!!	ATATGAATTTTTCTTGTCAA+CGG	-	chr1_2:3287577-3287596	None:intergenic	20.0%
!!!	CATTTTGACATTTTTATTTC+AGG	+	chr1_2:3287600-3287619	Msa0049780:intron	20.0%
!!!	TTTTGACATTTTTATTTCAG+GGG	+	chr1_2:3287602-3287621	Msa0049780:intron	20.0%
!!!	AGCATTGAATTGTAATTTTA+TGG	+	chr1_2:3288384-3288403	Msa0049780:three_prime_UTR	20.0%
!	AATTGTTGAGATTCAATTCA+AGG	-	chr1_2:3284884-3284903	None:intergenic	25.0%
!!	ATTGAGATATAACGAAGTTT+TGG	-	chr1_2:3284939-3284958	None:intergenic	25.0%
!	TTTCTCTCTTATCTTTCATT+TGG	+	chr1_2:3285151-3285170	Msa0049780:five_prime_UTR	25.0%
!!	TTGAGGGTTTTTGTTAATTA+TGG	+	chr1_2:3285419-3285438	Msa0049780:intron	25.0%
!!!	ATTGGATTTTGGTGATTTTA+GGG	+	chr1_2:3285448-3285467	Msa0049780:intron	25.0%
!!!	TTTAATGGTTTTGACATTGA+AGG	+	chr1_2:3285473-3285492	Msa0049780:CDS	25.0%
!	TGTGCAATTAATTATAACGA+TGG	+	chr1_2:3285504-3285523	Msa0049780:CDS	25.0%
!	CAGATGGCAATTTAATTAAA+CGG	-	chr1_2:3285572-3285591	None:intergenic	25.0%
!	TAATCCTTCATTTCAAAAAC+AGG	-	chr1_2:3285645-3285664	None:intergenic	25.0%
!	AAATGAAGGATTATCTTGAT+TGG	+	chr1_2:3285652-3285671	Msa0049780:CDS	25.0%
!!!	GAAAAATAAAAAGGGCATTT+TGG	+	chr1_2:3285966-3285985	Msa0049780:intron	25.0%
!	TTGATTTAGAAACTGATCAT+GGG	-	chr1_2:3286090-3286109	None:intergenic	25.0%
!!	TTTGATTTAGAAACTGATCA+TGG	-	chr1_2:3286091-3286110	None:intergenic	25.0%
!	ATCAGTTTCTAAATCAAACA+TGG	+	chr1_2:3286093-3286112	Msa0049780:intron	25.0%
!	TTTATTAGTGTTGTCAAATG+TGG	+	chr1_2:3286189-3286208	Msa0049780:intron	25.0%
!	TTGTTAAATAGCAGTTATAG+AGG	-	chr1_2:3286369-3286388	None:intergenic	25.0%
!!!	GATTTGTAGATTTGGAATTT+TGG	+	chr1_2:3286420-3286439	Msa0049780:intron	25.0%
!	GCTAAAAATGTGGATATATT+AGG	+	chr1_2:3286741-3286760	Msa0049780:CDS	25.0%
!	TTAAGTTTCATGCGTAAAAT+TGG	-	chr1_2:3286890-3286909	None:intergenic	25.0%
!	TTTACGCATGAAACTTAAAT+AGG	+	chr1_2:3286892-3286911	Msa0049780:intron	25.0%
!	TTACGCATGAAACTTAAATA+GGG	+	chr1_2:3286893-3286912	Msa0049780:intron	25.0%
!	AAATAACTAAAGAACCAAAC+AGG	-	chr1_2:3286982-3287001	None:intergenic	25.0%
!	ACAAAGAATATAATGTATCC+AGG	-	chr1_2:3287634-3287653	None:intergenic	25.0%
!	TAATTCAATATCTATACCTC+TGG	-	chr1_2:3287683-3287702	None:intergenic	25.0%
!!	AGAGGTATAGATATTGAATT+AGG	+	chr1_2:3287682-3287701	Msa0049780:intron	25.0%
!	GTAAATCTGATCATACAAAT+TGG	-	chr1_2:3287998-3288017	None:intergenic	25.0%
!!!	GGAGTTTTTGAAATCAAATT+AGG	+	chr1_2:3288243-3288262	Msa0049780:three_prime_UTR	25.0%
!	TTGAAATCAAATTAGGATAG+TGG	+	chr1_2:3288250-3288269	Msa0049780:three_prime_UTR	25.0%
!	TGAAATCAAATTAGGATAGT+GGG	+	chr1_2:3288251-3288270	Msa0049780:three_prime_UTR	25.0%
!	AGTGATTATTGAAGAAATGT+TGG	+	chr1_2:3288438-3288457	Msa0049780:three_prime_UTR	25.0%
!	GTGATTATTGAAGAAATGTT+GGG	+	chr1_2:3288439-3288458	Msa0049780:three_prime_UTR	25.0%
!	ACTTGTTTGCATTAATTGTT+TGG	-	chr1_2:3288511-3288530	None:intergenic	25.0%
!	AGCTATAGACAAAAAAAATC+AGG	+	chr1_2:3288549-3288568	Msa0049780:three_prime_UTR	25.0%
!!	TTTTCTGTTCTAATCCTAAA+TGG	+	chr1_2:3288601-3288620	Msa0049780:three_prime_UTR	25.0%
	AAAACGCCAAAGAAACTTAA+GGG	-	chr1_2:3285083-3285102	None:intergenic	30.0%
	ATAAGAGAGAAAAACACCAA+CGG	-	chr1_2:3285143-3285162	None:intergenic	30.0%
!	TCTTCATTTTCTTGTTCCTA+TGG	+	chr1_2:3285186-3285205	Msa0049780:exon	30.0%
	ATCACTTTCTTTCTTGGATT+TGG	+	chr1_2:3285256-3285275	Msa0049780:CDS	30.0%
	TGTCATGTTTATTACATGAG+CGG	+	chr1_2:3285292-3285311	Msa0049780:CDS	30.0%
	TGTTAATTATGGTGTGTGAT+TGG	+	chr1_2:3285430-3285449	Msa0049780:intron	30.0%
!!	GATTGGATTTTGGTGATTTT+AGG	+	chr1_2:3285447-3285466	Msa0049780:intron	30.0%
!!	TTGGATTTTGGTGATTTTAG+GGG	+	chr1_2:3285449-3285468	Msa0049780:intron	30.0%
	AATTAAATTGGGCATGCATT+CGG	-	chr1_2:3285769-3285788	None:intergenic	30.0%
!	ATGCCCAATTTATCATGTTT+TGG	+	chr1_2:3285834-3285853	Msa0049780:intron	30.0%
!	TGCCCAATTTATCATGTTTT+GGG	+	chr1_2:3285835-3285854	Msa0049780:intron	30.0%
	ACCCCAAAACATGATAAATT+GGG	-	chr1_2:3285840-3285859	None:intergenic	30.0%
	ATTCGTAAAACGTTAAGTAC+CGG	+	chr1_2:3285867-3285886	Msa0049780:intron	30.0%
	GTGTTATGTTCTATCTTATC+CGG	-	chr1_2:3285889-3285908	None:intergenic	30.0%
!!	TGGGACAAAAAAGGTATTAA+GGG	-	chr1_2:3286071-3286090	None:intergenic	30.0%
!!	ATGGGACAAAAAAGGTATTA+AGG	-	chr1_2:3286072-3286091	None:intergenic	30.0%
	GTACAAAATGTTGTCAAGTA+AGG	-	chr1_2:3286279-3286298	None:intergenic	30.0%
	ATAGAGGCAAAATATCGTTA+TGG	-	chr1_2:3286353-3286372	None:intergenic	30.0%
!	GTTGTTGTGATTTGTAGATT+TGG	+	chr1_2:3286412-3286431	Msa0049780:intron	30.0%
!!	ATTTGGAATTTTGGTGCAAA+AGG	+	chr1_2:3286429-3286448	Msa0049780:intron	30.0%
	AACTTAGTCAGAGGAAAATA+AGG	-	chr1_2:3286537-3286556	None:intergenic	30.0%
	TAAAGAACTGAAACTCACAA+TGG	-	chr1_2:3286836-3286855	None:intergenic	30.0%
!	TTCAAGTTCTGGTAATAGTA+TGG	+	chr1_2:3286932-3286951	Msa0049780:intron	30.0%
!!!	GCTAGATTAGTTTTTCATGT+TGG	+	chr1_2:3286954-3286973	Msa0049780:intron	30.0%
!	TTCAGCTATAACATCTGTTT+TGG	+	chr1_2:3287046-3287065	Msa0049780:intron	30.0%
	AAACTATGAAAATCAACTGC+TGG	-	chr1_2:3287101-3287120	None:intergenic	30.0%
	GATGCAAAATTGAAATGTGA+AGG	+	chr1_2:3287162-3287181	Msa0049780:intron	30.0%
	GAATGCATTTGTAGTTTCTT+CGG	+	chr1_2:3287435-3287454	Msa0049780:intron	30.0%
	TTCAAACAGTCATTTACAGA+TGG	+	chr1_2:3287756-3287775	Msa0049780:intron	30.0%
!	TAATTTTGCTTACACACTTC+TGG	+	chr1_2:3287823-3287842	Msa0049780:intron	30.0%
!!!	ATATGGAAGCGTGTATTTTT+TGG	+	chr1_2:3288107-3288126	Msa0049780:three_prime_UTR	30.0%
	GATGATAACAATAGGTAGAA+CGG	-	chr1_2:3288135-3288154	None:intergenic	30.0%
!!	GTTCGGCAGTTTTATATTTT+TGG	+	chr1_2:3288357-3288376	Msa0049780:three_prime_UTR	30.0%
	GTTAGAAACATCAATGTTGA+CGG	+	chr1_2:3288406-3288425	Msa0049780:three_prime_UTR	30.0%
	TTAGAAACATCAATGTTGAC+GGG	+	chr1_2:3288407-3288426	Msa0049780:three_prime_UTR	30.0%
!!	CTGTGATTTTAGTGTTCTTT+TGG	+	chr1_2:3288476-3288495	Msa0049780:three_prime_UTR	30.0%
!!!	TAACGAAGTTTTGGAGAAGA+AGG	-	chr1_2:3284930-3284949	None:intergenic	35.0%
	AAAGAAACTTAAGGGAATGG+TGG	-	chr1_2:3285075-3285094	None:intergenic	35.0%
	ACCATTCCCTTAAGTTTCTT+TGG	+	chr1_2:3285074-3285093	Msa0049780:five_prime_UTR	35.0%
	CAAAACGCCAAAGAAACTTA+AGG	-	chr1_2:3285084-3285103	None:intergenic	35.0%
	TTTCTTGTTCCTATGGTTCT+TGG	+	chr1_2:3285193-3285212	Msa0049780:exon	35.0%
	GTAATTTATCGTCAGAGATG+TGG	+	chr1_2:3285229-3285248	Msa0049780:CDS	35.0%
	GGTATCATCACTTTCTTTCT+TGG	+	chr1_2:3285250-3285269	Msa0049780:CDS	35.0%
!	TATGGTGTGTGATTGGATTT+TGG	+	chr1_2:3285437-3285456	Msa0049780:intron	35.0%
!!	GATGGATTGTTGAAAGAAGA+AGG	+	chr1_2:3285522-3285541	Msa0049780:CDS	35.0%
	CCAACATACTCAATAACAGA+TGG	-	chr1_2:3285588-3285607	None:intergenic	35.0%
	CCATCTGTTATTGAGTATGT+TGG	+	chr1_2:3285585-3285604	Msa0049780:CDS	35.0%
!!!	GTTGGTTTTTGTCTTTGTTG+TGG	+	chr1_2:3285603-3285622	Msa0049780:CDS	35.0%
!!!	TGGTCCTGTTTTTGAAATGA+AGG	+	chr1_2:3285638-3285657	Msa0049780:CDS	35.0%
	GATTATCTTGATTGGACTGA+AGG	+	chr1_2:3285660-3285679	Msa0049780:CDS	35.0%
!	GCCCAATTTATCATGTTTTG+GGG	+	chr1_2:3285836-3285855	Msa0049780:intron	35.0%
	CACCCCAAAACATGATAAAT+TGG	-	chr1_2:3285841-3285860	None:intergenic	35.0%
	TAGACAAGACAAAACTGTAC+TGG	+	chr1_2:3285911-3285930	Msa0049780:intron	35.0%
	AAAACTGTACTGGAGAAAGA+TGG	+	chr1_2:3285921-3285940	Msa0049780:intron	35.0%
	AACTGATCATGGGACAAAAA+AGG	-	chr1_2:3286080-3286099	None:intergenic	35.0%
	TAAAAACCAAAGAACTCGAC+TGG	-	chr1_2:3286134-3286153	None:intergenic	35.0%
	AATGTGGATAGCAGGAAATA+TGG	+	chr1_2:3286205-3286224	Msa0049780:intron	35.0%
	ATGTGGATAGCAGGAAATAT+GGG	+	chr1_2:3286206-3286225	Msa0049780:intron	35.0%
	TTGTCAAGTAAGGACTATAG+TGG	-	chr1_2:3286269-3286288	None:intergenic	35.0%
!!!	ACTTCAAGCTGGTTTTTGTA+TGG	+	chr1_2:3286491-3286510	Msa0049780:intron	35.0%
!!!	CTTCAAGCTGGTTTTTGTAT+GGG	+	chr1_2:3286492-3286511	Msa0049780:intron	35.0%
	CCATTCATGATATGAAGGTT+CGG	-	chr1_2:3286562-3286581	None:intergenic	35.0%
	AAGCACCATTCATGATATGA+AGG	-	chr1_2:3286567-3286586	None:intergenic	35.0%
	GAAGCTTCTATTATCATCTC+TGG	+	chr1_2:3286663-3286682	Msa0049780:CDS	35.0%
	TTCTATTATCATCTCTGGCT+TGG	+	chr1_2:3286668-3286687	Msa0049780:CDS	35.0%
!	TCTATTATCATCTCTGGCTT+GGG	+	chr1_2:3286669-3286688	Msa0049780:CDS	35.0%
	GTTTCAGTTCTTTACTTGCA+CGG	+	chr1_2:3286842-3286861	Msa0049780:intron	35.0%
!!!	ACTTGATGGTTTTCAAGTTC+TGG	+	chr1_2:3286921-3286940	Msa0049780:intron	35.0%
!	TTTTCATGTTGGTACCTGTT+TGG	+	chr1_2:3286965-3286984	Msa0049780:intron	35.0%
	TTGTTCCTACCCTTTAAACT+AGG	+	chr1_2:3287136-3287155	Msa0049780:intron	35.0%
	TGCATCTAGCCTAGTTTAAA+GGG	-	chr1_2:3287148-3287167	None:intergenic	35.0%
	TTGCATCTAGCCTAGTTTAA+AGG	-	chr1_2:3287149-3287168	None:intergenic	35.0%
	TTCTTCGGAAAAACCAACAA+AGG	+	chr1_2:3287450-3287469	Msa0049780:intron	35.0%
	ATGACTATCTGTTCCTTTGT+TGG	-	chr1_2:3287466-3287485	None:intergenic	35.0%
	ATCACTCTTGTGAATTGTGA+TGG	+	chr1_2:3287493-3287512	Msa0049780:intron	35.0%
!	GTTCTAAGTTATTCCTGTGT+TGG	+	chr1_2:3287845-3287864	Msa0049780:intron	35.0%
	TTTGTGTGCTGTGTTTGAAT+AGG	+	chr1_2:3288056-3288075	Msa0049780:intron	35.0%
	AAAATACACGCTTCCATATG+AGG	-	chr1_2:3288106-3288125	None:intergenic	35.0%
	CCAAGAAGGATGATAACAAT+AGG	-	chr1_2:3288143-3288162	None:intergenic	35.0%
	CCTATTGTTATCATCCTTCT+TGG	+	chr1_2:3288140-3288159	Msa0049780:three_prime_UTR	35.0%
	AACAGTGCAGTTATTCTCTT+TGG	+	chr1_2:3288222-3288241	Msa0049780:three_prime_UTR	35.0%
!!	CTTTAGTCTTGGAAATGGTT+CGG	+	chr1_2:3288340-3288359	Msa0049780:three_prime_UTR	35.0%
	ACAACAAACTGTGACTGTGA+TGG	+	chr1_2:3284820-3284839	Msa0049780:five_prime_UTR	40.0%
	AATGACGTGATTACCCTTAC+CGG	-	chr1_2:3284846-3284865	None:intergenic	40.0%
	GCCAAAGAAACTTAAGGGAA+TGG	-	chr1_2:3285078-3285097	None:intergenic	40.0%
!!	TTTCTTTGGCGTTTTGTTCC+TGG	+	chr1_2:3285088-3285107	Msa0049780:five_prime_UTR	40.0%
	GAAGCATAACCAAGAACCAT+AGG	-	chr1_2:3285205-3285224	None:intergenic	40.0%
	GGTTCTTGGTTATGCTTCTA+TGG	+	chr1_2:3285207-3285226	Msa0049780:CDS	40.0%
!!	GGTGATTTTAGGGGCTTTAA+TGG	+	chr1_2:3285458-3285477	Msa0049780:intron	40.0%
	TTGATTGGACTGAAGGACAA+GGG	+	chr1_2:3285667-3285686	Msa0049780:CDS	40.0%
	AGATGTCCCATGGTTTAGTA+AGG	+	chr1_2:3286019-3286038	Msa0049780:intron	40.0%
	GATGTCCCATGGTTTAGTAA+GGG	+	chr1_2:3286020-3286039	Msa0049780:intron	40.0%
	TGTTGTCAAATGTGGATAGC+AGG	+	chr1_2:3286197-3286216	Msa0049780:intron	40.0%
	TGTTTAGATTCCTCTATGCC+AGG	+	chr1_2:3286327-3286346	Msa0049780:intron	40.0%
	CCGAACCTTCATATCATGAA+TGG	+	chr1_2:3286559-3286578	Msa0049780:intron	40.0%
	CATATCATGAATGGTGCTTC+TGG	+	chr1_2:3286568-3286587	Msa0049780:intron	40.0%
!	ATGGTGCTTCTGGAAAAAGT+TGG	+	chr1_2:3286578-3286597	Msa0049780:intron	40.0%
!	TGGTGCTTCTGGAAAAAGTT+GGG	+	chr1_2:3286579-3286598	Msa0049780:intron	40.0%
	TTGGGTTACCAGTATATGTC+TGG	+	chr1_2:3286597-3286616	Msa0049780:intron	40.0%
	CTGTTAAGCCAGACATATAC+TGG	-	chr1_2:3286608-3286627	None:intergenic	40.0%
	TTGGGACAGAGCTAAAAATG+TGG	+	chr1_2:3286731-3286750	Msa0049780:CDS	40.0%
	ACTTGAATATTCCACACAGC+TGG	-	chr1_2:3286798-3286817	None:intergenic	40.0%
	TAAATAGGGTGCAGACTTGA+TGG	+	chr1_2:3286907-3286926	Msa0049780:intron	40.0%
	CTATGAAAATCAACTGCTGG+TGG	-	chr1_2:3287098-3287117	None:intergenic	40.0%
	TCTAGCCTAGTTTAAAGGGT+AGG	-	chr1_2:3287144-3287163	None:intergenic	40.0%
	TATGATAGGCTTATCCAGAG+TGG	+	chr1_2:3287242-3287261	Msa0049780:CDS	40.0%
	ATGATAGGCTTATCCAGAGT+GGG	+	chr1_2:3287243-3287262	Msa0049780:CDS	40.0%
	GCAAGTAACTGAAGAAATCC+TGG	-	chr1_2:3287275-3287294	None:intergenic	40.0%
	CACATGCCAAATAGCACTAA+CGG	-	chr1_2:3287306-3287325	None:intergenic	40.0%
	TTATTTCAGGGGTTGTATCC+TGG	+	chr1_2:3287613-3287632	Msa0049780:intron	40.0%
!!	CAGTTAATTAACTTGCGCTG+CGG	+	chr1_2:3287725-3287744	Msa0049780:intron	40.0%
!!	AGGGCATTTTTAACTGTTGG+AGG	-	chr1_2:3287794-3287813	None:intergenic	40.0%
	TCCAACAGTTAAAAATGCCC+TGG	+	chr1_2:3287793-3287812	Msa0049780:intron	40.0%
!!	ACCAGGGCATTTTTAACTGT+TGG	-	chr1_2:3287797-3287816	None:intergenic	40.0%
	AGCAAAATTAGCGAACACCA+GGG	-	chr1_2:3287813-3287832	None:intergenic	40.0%
	AAGCAAAATTAGCGAACACC+AGG	-	chr1_2:3287814-3287833	None:intergenic	40.0%
!!	TTATTCCTGTGTTGGCTTCA+TGG	+	chr1_2:3287853-3287872	Msa0049780:intron	40.0%
	TGTGAATGTGTTTGTGTGAG+TGG	-	chr1_2:3287968-3287987	None:intergenic	40.0%
	CATGAAACTCTTGCCTCATA+TGG	+	chr1_2:3288090-3288109	Msa0049780:exon	40.0%
	GCTTGATCACTTTACCAAGA+AGG	-	chr1_2:3288157-3288176	None:intergenic	40.0%
!	TTCCTTTTGAGCTTTCGATC+TGG	-	chr1_2:3288192-3288211	None:intergenic	40.0%
	AAAGCTCAAAAGGAAGAGTG+AGG	+	chr1_2:3288197-3288216	Msa0049780:three_prime_UTR	40.0%
!!	TCAAATTAGGATAGTGGGAG+AGG	+	chr1_2:3288256-3288275	Msa0049780:three_prime_UTR	40.0%
	TGTAACAGCTCCTTTAGTCT+TGG	+	chr1_2:3288329-3288348	Msa0049780:three_prime_UTR	40.0%
!!	AGCTCCTTTAGTCTTGGAAA+TGG	+	chr1_2:3288335-3288354	Msa0049780:three_prime_UTR	40.0%
	CGAACCATTTCCAAGACTAA+AGG	-	chr1_2:3288342-3288361	None:intergenic	40.0%
!!	GGAATCAAGTTGAAGCTCCA+TGG	-	chr1_2:3284994-3285013	None:intergenic	45.0%
	GGAGCTTCAACTTGATTCCA+TGG	+	chr1_2:3284995-3285014	Msa0049780:five_prime_UTR	45.0%
	GACGGAAACACCAATTGAAG+CGG	-	chr1_2:3285021-3285040	None:intergenic	45.0%
	AAGTGTTTAGGAAGACGACC+AGG	-	chr1_2:3285109-3285128	None:intergenic	45.0%
	AGAGAGAAAAACACCAACGG+CGG	-	chr1_2:3285140-3285159	None:intergenic	45.0%
	ATTACATGAGCGGTGATGCT+TGG	+	chr1_2:3285302-3285321	Msa0049780:CDS	45.0%
	ACTGGTAGTCTCTACTCTGA+AGG	+	chr1_2:3285346-3285365	Msa0049780:intron	45.0%
!	TGTTGTGGAAGTCACTTTGC+TGG	+	chr1_2:3285618-3285637	Msa0049780:CDS	45.0%
	CTTGATTGGACTGAAGGACA+AGG	+	chr1_2:3285666-3285685	Msa0049780:CDS	45.0%
	TGATTGGACTGAAGGACAAG+GGG	+	chr1_2:3285668-3285687	Msa0049780:CDS	45.0%
	CTGTACTGGAGAAAGATGGA+AGG	+	chr1_2:3285925-3285944	Msa0049780:intron	45.0%
	CTAGATCGAAAGATGTCCCA+TGG	+	chr1_2:3286009-3286028	Msa0049780:intron	45.0%
	CGTGTCCCTTACTAAACCAT+GGG	-	chr1_2:3286028-3286047	None:intergenic	45.0%
	TCGTGTCCCTTACTAAACCA+TGG	-	chr1_2:3286029-3286048	None:intergenic	45.0%
	AGTTGTCCAGTCGAGTTCTT+TGG	+	chr1_2:3286125-3286144	Msa0049780:intron	45.0%
	GCTATGCAACAGTGCTATAG+CGG	+	chr1_2:3286243-3286262	Msa0049780:intron	45.0%
	GGCAAAATATCGTTATGGCC+TGG	-	chr1_2:3286348-3286367	None:intergenic	45.0%
	GGACCAAAACCATCACCATA+TGG	+	chr1_2:3286450-3286469	Msa0049780:intron	45.0%
!!!	GCACCATATGGTGATGGTTT+TGG	-	chr1_2:3286456-3286475	None:intergenic	45.0%
	AGTGTTGCACCATATGGTGA+TGG	-	chr1_2:3286462-3286481	None:intergenic	45.0%
	TCAGAGGAAAATAAGGCACG+AGG	-	chr1_2:3286530-3286549	None:intergenic	45.0%
!	GGTTCGGTAAACTTAGTCAG+AGG	-	chr1_2:3286546-3286565	None:intergenic	45.0%
!!!	TTTTTAGCTCTGTCCCAACG+CGG	-	chr1_2:3286729-3286748	None:intergenic	45.0%
	CAGTTGTAATTCCAGCTGTG+TGG	+	chr1_2:3286784-3286803	Msa0049780:CDS	45.0%
	GGAATATTCAAGTCAGCACC+TGG	+	chr1_2:3286805-3286824	Msa0049780:CDS	45.0%
	AATAGCACTAACGGTCTGTG+TGG	-	chr1_2:3287297-3287316	None:intergenic	45.0%
!	CACAGACCGTTAGTGCTATT+TGG	+	chr1_2:3287297-3287316	Msa0049780:CDS	45.0%
	TACCACGAAACAACTTTGCC+AGG	+	chr1_2:3287538-3287557	Msa0049780:intron	45.0%
	AACGGTACAAAATAGCAGCC+TGG	-	chr1_2:3287559-3287578	None:intergenic	45.0%
!!	CAGTCAGCATTGATGATTGC+TGG	+	chr1_2:3287655-3287674	Msa0049780:CDS	45.0%
!!	TTGATGATTGCTGGTTCCAG+AGG	+	chr1_2:3287664-3287683	Msa0049780:CDS	45.0%
	GTCATTTACAGATGGCAGCA+AGG	+	chr1_2:3287764-3287783	Msa0049780:intron	45.0%
	ACAAACCATGAAGCCAACAC+AGG	-	chr1_2:3287861-3287880	None:intergenic	45.0%
	CTTGGTAAAGTGATCAAGCC+TGG	+	chr1_2:3288158-3288177	Msa0049780:three_prime_UTR	45.0%
	GTAAAGTGATCAAGCCTGGA+AGG	+	chr1_2:3288162-3288181	Msa0049780:three_prime_UTR	45.0%
!	TTTTGAGCTTTCGATCTGGC+AGG	-	chr1_2:3288188-3288207	None:intergenic	45.0%
	TGCCAGATCGAAAGCTCAAA+AGG	+	chr1_2:3288187-3288206	Msa0049780:three_prime_UTR	45.0%
!!!	TTTTTTATATTTTATTATTG+AGG	+	chr1_2:3285402-3285421	Msa0049780:intron	5.0%
!!!	TTTTTATATTTTATTATTGA+GGG	+	chr1_2:3285403-3285422	Msa0049780:intron	5.0%
	CAAACTGTGACTGTGATGGC+CGG	+	chr1_2:3284824-3284843	Msa0049780:five_prime_UTR	50.0%
!!	TCAAGTTGAAGCTCCATGGC+TGG	-	chr1_2:3284990-3285009	None:intergenic	50.0%
	GATTCCATGGCCGCTTCAAT+TGG	+	chr1_2:3285008-3285027	Msa0049780:five_prime_UTR	50.0%
	AACACCAATTGAAGCGGCCA+TGG	-	chr1_2:3285015-3285034	None:intergenic	50.0%
	AGCGGTGATGCTTGGAAAGA+AGG	+	chr1_2:3285310-3285329	Msa0049780:CDS	50.0%
	GGTGATGCTTGGAAAGAAGG+TGG	+	chr1_2:3285313-3285332	Msa0049780:CDS	50.0%
	GAAGGTGGAATCGATGCAAC+TGG	+	chr1_2:3285328-3285347	Msa0049780:CDS	50.0%
	ATCGTTATGGCCTGGCATAG+AGG	-	chr1_2:3286340-3286359	None:intergenic	50.0%
!!	GCTCGAAGTGTTGCACCATA+TGG	-	chr1_2:3286468-3286487	None:intergenic	50.0%
	CTTCGAGCTCTACTTCAAGC+TGG	+	chr1_2:3286480-3286499	Msa0049780:intron	50.0%
!	TGTCTGGCTTAACAGCACGT+TGG	+	chr1_2:3286613-3286632	Msa0049780:CDS	50.0%
!!	ATCTCTGGCTTGGGTTTCAG+TGG	+	chr1_2:3286678-3286697	Msa0049780:CDS	50.0%
	AAACTCACAATGGCGAAGCC+AGG	-	chr1_2:3286826-3286845	None:intergenic	50.0%
!	AGCCTGGCAAAGTTGTTTCG+TGG	-	chr1_2:3287543-3287562	None:intergenic	50.0%
!!	ATTAGGATAGTGGGAGAGGC+TGG	+	chr1_2:3288260-3288279	Msa0049780:three_prime_UTR	50.0%
	GGCTGGATCTTCAGTTTCCA+CGG	+	chr1_2:3288281-3288300	Msa0049780:three_prime_UTR	50.0%
	GCTGGATCTTCAGTTTCCAC+GGG	+	chr1_2:3288282-3288301	Msa0049780:three_prime_UTR	50.0%
	CTGGATCTTCAGTTTCCACG+GGG	+	chr1_2:3288283-3288302	Msa0049780:three_prime_UTR	50.0%
	TGTGACTGTGATGGCCGGTA+AGG	+	chr1_2:3284829-3284848	Msa0049780:five_prime_UTR	55.0%
	GTGACTGTGATGGCCGGTAA+GGG	+	chr1_2:3284830-3284849	Msa0049780:five_prime_UTR	55.0%
	GCAGAGAAGGAAGCGGAGAA+CGG	-	chr1_2:3285045-3285064	None:intergenic	55.0%
	CGACGAAGCAGAGAAGGAAG+CGG	-	chr1_2:3285052-3285071	None:intergenic	55.0%
!!	GCGGCGGAGTAGAAGTGTTT+AGG	-	chr1_2:3285121-3285140	None:intergenic	55.0%
	GAGAAAAACACCAACGGCGG+CGG	-	chr1_2:3285137-3285156	None:intergenic	55.0%
	ATCCAGAGTGGGAAGAAGCC+AGG	+	chr1_2:3287254-3287273	Msa0049780:CDS	55.0%
	ATCCTGGCTTCTTCCCACTC+TGG	-	chr1_2:3287259-3287278	None:intergenic	55.0%
	AAAACCAGAGCTGAACCCCG+TGG	-	chr1_2:3288301-3288320	None:intergenic	55.0%
	GGCTCGTTGTGCTGTGTGGT+TGG	-	chr1_2:3284969-3284988	None:intergenic	60.0%
	ACAGCACAACGAGCCAGCCA+TGG	+	chr1_2:3284974-3284993	Msa0049780:five_prime_UTR	60.0%
	AAGGAAGCGGAGAACGGCGA+CGG	-	chr1_2:3285039-3285058	None:intergenic	60.0%
!	TGGTGGCGACGAAGCAGAGA+AGG	-	chr1_2:3285058-3285077	None:intergenic	60.0%
!!	CTGGCTTGGGTTTCAGTGGC+TGG	+	chr1_2:3286682-3286701	Msa0049780:CDS	60.0%
	CTCTCCACCAAAGCCGCGTT+GGG	+	chr1_2:3286713-3286732	Msa0049780:CDS	60.0%
	TTCGATCTGGCAGGCCTTCC+AGG	-	chr1_2:3288179-3288198	None:intergenic	60.0%
	GTTTCCACGGGGTTCAGCTC+TGG	+	chr1_2:3288294-3288313	Msa0049780:three_prime_UTR	60.0%
!!	GGCTGGCTCGTTGTGCTGTG+TGG	-	chr1_2:3284973-3284992	None:intergenic	65.0%
	CACTTCTACTCCGCCGCCGT+TGG	+	chr1_2:3285124-3285143	Msa0049780:five_prime_UTR	65.0%
!	CCAACGCGGCTTTGGTGGAG+AGG	-	chr1_2:3286715-3286734	None:intergenic	65.0%
	CCTCTCCACCAAAGCCGCGT+TGG	+	chr1_2:3286712-3286731	Msa0049780:CDS	65.0%
!	CTGTCCCAACGCGGCTTTGG+TGG	-	chr1_2:3286720-3286739	None:intergenic	65.0%
	GCTCTGTCCCAACGCGGCTT+TGG	-	chr1_2:3286723-3286742	None:intergenic	65.0%
!!	GGATAGTGGGAGAGGCTGGC+TGG	+	chr1_2:3288264-3288283	Msa0049780:three_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	3284802	3288633	3284802	ID=Msa0049780;Name=Msa0049780
chr1_2	mRNA	3284802	3288633	3284802	ID=Msa0049780-mRNA-1;Parent=Msa0049780;Name=Msa0049780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=403\|0.6\|0.83\|1\|0.8\|0.83\|6\|539\|253
chr1_2	exon	3284802	3285349	3284802	ID=Msa0049780-mRNA-1:exon:812;Parent=Msa0049780-mRNA-1
chr1_2	exon	3285469	3285689	3285469	ID=Msa0049780-mRNA-1:exon:813;Parent=Msa0049780-mRNA-1
chr1_2	exon	3286609	3286837	3286609	ID=Msa0049780-mRNA-1:exon:814;Parent=Msa0049780-mRNA-1
chr1_2	exon	3287237	3287322	3287237	ID=Msa0049780-mRNA-1:exon:815;Parent=Msa0049780-mRNA-1
chr1_2	exon	3287622	3287685	3287622	ID=Msa0049780-mRNA-1:exon:816;Parent=Msa0049780-mRNA-1
chr1_2	exon	3288078	3288633	3288078	ID=Msa0049780-mRNA-1:exon:817;Parent=Msa0049780-mRNA-1
chr1_2	five_prime_UTR	3284802	3285204	3284802	ID=Msa0049780-mRNA-1:five_prime_utr;Parent=Msa0049780-mRNA-1
chr1_2	CDS	3285205	3285349	3285205	ID=Msa0049780-mRNA-1:cds;Parent=Msa0049780-mRNA-1
chr1_2	CDS	3285469	3285689	3285469	ID=Msa0049780-mRNA-1:cds;Parent=Msa0049780-mRNA-1
chr1_2	CDS	3286609	3286837	3286609	ID=Msa0049780-mRNA-1:cds;Parent=Msa0049780-mRNA-1
chr1_2	CDS	3287237	3287322	3287237	ID=Msa0049780-mRNA-1:cds;Parent=Msa0049780-mRNA-1
chr1_2	CDS	3287622	3287685	3287622	ID=Msa0049780-mRNA-1:cds;Parent=Msa0049780-mRNA-1
chr1_2	CDS	3288078	3288094	3288078	ID=Msa0049780-mRNA-1:cds;Parent=Msa0049780-mRNA-1
chr1_2	three_prime_UTR	3288095	3288633	3288095	ID=Msa0049780-mRNA-1:three_prime_utr;Parent=Msa0049780-mRNA-1

Gene Sequence

>Msa0049780

ATGGTTCTTGGTTATGCTTCTATGGTAATTTATCGTCAGAGATGTGGTATCATCACTTTCTTTCTTGGATTTGGTTATCTCATTGCTTGTCATGTTTATTACATGAGCGGTGATGCTTGGAAAGAAGGTGGAATCGATGCAACTGGGGCTTTAATGGTTTTGACATTGAAGGTTATATCGTGTGCAATTAATTATAACGATGGATTGTTGAAAGAAGAAGGTTTGCGTGATGCACAGAAGAAAAACCGTTTAATTAAATTGCCATCTGTTATTGAGTATGTTGGTTTTTGTCTTTGTTGTGGAAGTCACTTTGCTGGTCCTGTTTTTGAAATGAAGGATTATCTTGATTGGACTGAAGGACAAGGGTATATGTCTGGCTTAACAGCACGTTGGAAATATTATTTCATTTGGTCGATTTCAGAAGCTTCTATTATCATCTCTGGCTTGGGTTTCAGTGGCTGGACTGATTCCTCTCCACCAAAGCCGCGTTGGGACAGAGCTAAAAATGTGGATATATTAGGTGTTGAGTTTGCAAAGAGTGCAGTTGTAATTCCAGCTGTGTGGAATATTCAAGTCAGCACCTGGCTTCGCCATTATGTTTATGATAGGCTTATCCAGAGTGGGAAGAAGCCAGGATTTCTTCAGTTACTTGCCACACAGACCGTTAGTGCTATTTGGCATGGGTTGTATCCTGGATACATTATATTCTTTGTTCAGTCAGCATTGATGATTGCTGGTTCCAGAGGTATTAAGTCTGCATGA

Protein sequence

>Msa0049780

MVLGYASMVIYRQRCGIITFFLGFGYLIACHVYYMSGDAWKEGGIDATGALMVLTLKVISCAINYNDGLLKEEGLRDAQKKNRLIKLPSVIEYVGFCLCCGSHFAGPVFEMKDYLDWTEGQGYMSGLTARWKYYFIWSISEASIIISGLGFSGWTDSSPPKPRWDRAKNVDILGVEFAKSAVVIPAVWNIQVSTWLRHYVYDRLIQSGKKPGFLQLLATQTVSAIWHGLYPGYIIFFVQSALMIAGSRGIKSA*