Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461820 | XP_013468284.1 | 95.000 | 140 | 6 | 1 | 1 | 139 | 1 | 140 | 4.95e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461820 | A0A072VL41 | 95.000 | 140 | 6 | 1 | 1 | 139 | 1 | 140 | 2.37e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1461820 | 0.839917 | 1.189151e-57 | -8.615850e-47 |
| Msa0007450 | Msa1461820 | 0.814609 | 1.412389e-51 | -8.615850e-47 |
| Msa0017120 | Msa1461820 | 0.812023 | 5.222803e-51 | -8.615850e-47 |
| Msa0065390 | Msa1461820 | 0.814350 | 1.610967e-51 | -8.615850e-47 |
| Msa0089210 | Msa1461820 | 0.817079 | 3.970536e-52 | -8.615850e-47 |
| Msa0110710 | Msa1461820 | 0.810887 | 9.216132e-51 | -8.615850e-47 |
| Msa1354040 | Msa1461820 | 0.803342 | 3.649892e-49 | -8.615850e-47 |
| Msa1373510 | Msa1461820 | 0.819230 | 1.294978e-52 | -8.615850e-47 |
| Msa1381130 | Msa1461820 | 0.813270 | 2.786328e-51 | -8.615850e-47 |
| Msa1452380 | Msa1461820 | 0.806627 | 7.505969e-50 | -8.615850e-47 |
| Msa0607480 | Msa1461820 | 0.801530 | 8.622889e-49 | -8.615850e-47 |
| Msa0610860 | Msa1461820 | 0.803220 | 3.867343e-49 | -8.615850e-47 |
| Msa0614230 | Msa1461820 | 0.821423 | 4.070242e-53 | -8.615850e-47 |
| Msa0638710 | Msa1461820 | 0.827610 | 1.422247e-54 | -8.615850e-47 |
| Msa0640880 | Msa1461820 | 0.841588 | 4.339702e-58 | -8.615850e-47 |
| Msa0642650 | Msa1461820 | 0.829491 | 4.997707e-55 | -8.615850e-47 |
| Msa0678890 | Msa1461820 | 0.809677 | 1.681113e-50 | -8.615850e-47 |
| Msa0681890 | Msa1461820 | 0.821412 | 4.092764e-53 | -8.615850e-47 |
| Msa0703720 | Msa1461820 | 0.804776 | 1.836130e-49 | -8.615850e-47 |
| Msa0738880 | Msa1461820 | 0.802227 | 6.200246e-49 | -8.615850e-47 |
| Msa0803130 | Msa1461820 | 0.821735 | 3.448003e-53 | -8.615850e-47 |
| Msa0841490 | Msa1461820 | 0.818511 | 1.886548e-52 | -8.615850e-47 |
| Msa0122210 | Msa1461820 | 0.806633 | 7.483846e-50 | -8.615850e-47 |
| Msa0135980 | Msa1461820 | 0.807398 | 5.153142e-50 | -8.615850e-47 |
| Msa0146470 | Msa1461820 | 0.831596 | 1.525942e-55 | -8.615850e-47 |
| Msa0157020 | Msa1461820 | 0.819069 | 1.409148e-52 | -8.615850e-47 |
| Msa0185390 | Msa1461820 | 0.819110 | 1.379653e-52 | -8.615850e-47 |
| Msa0223280 | Msa1461820 | 0.829013 | 6.526558e-55 | -8.615850e-47 |
| Msa1224670 | Msa1461820 | 0.820776 | 5.736332e-53 | -8.615850e-47 |
| Msa1235890 | Msa1461820 | 0.812453 | 4.207126e-51 | -8.615850e-47 |
| Msa1263030 | Msa1461820 | 0.816721 | 4.778162e-52 | -8.615850e-47 |
| Msa1299160 | Msa1461820 | 0.801152 | 1.030445e-48 | -8.615850e-47 |
| Msa1315980 | Msa1461820 | 0.812401 | 4.318750e-51 | -8.615850e-47 |
| Msa0380060 | Msa1461820 | 0.815345 | 9.693301e-52 | -8.615850e-47 |
| Msa0388720 | Msa1461820 | 0.819110 | 1.379114e-52 | -8.615850e-47 |
| Msa0417630 | Msa1461820 | 0.819896 | 9.130053e-53 | -8.615850e-47 |
| Msa0429270 | Msa1461820 | 0.820216 | 7.710782e-53 | -8.615850e-47 |
| Msa0990520 | Msa1461820 | 0.812793 | 3.546284e-51 | -8.615850e-47 |
| Msa0992570 | Msa1461820 | 0.821181 | 4.627246e-53 | -8.615850e-47 |
| Msa0992590 | Msa1461820 | 0.824078 | 9.805406e-54 | -8.615850e-47 |
| Msa1002040 | Msa1461820 | 0.835208 | 1.918310e-56 | -8.615850e-47 |
| Msa1004500 | Msa1461820 | 0.803544 | 3.314646e-49 | -8.615850e-47 |
| Msa1022310 | Msa1461820 | 0.821510 | 3.886752e-53 | -8.615850e-47 |
| Msa1027790 | Msa1461820 | 0.823226 | 1.552836e-53 | -8.615850e-47 |
| Msa1045880 | Msa1461820 | 0.802980 | 4.336337e-49 | -8.615850e-47 |
| Msa1045970 | Msa1461820 | 0.806575 | 7.694873e-50 | -8.615850e-47 |
| Msa1046870 | Msa1461820 | 0.810886 | 9.222074e-51 | -8.615850e-47 |
| Msa1061180 | Msa1461820 | 0.800300 | 1.537504e-48 | -8.615850e-47 |
| Msa0259980 | Msa1461820 | 0.826046 | 3.362156e-54 | -8.615850e-47 |
| Msa0284780 | Msa1461820 | 0.804631 | 1.968808e-49 | -8.615850e-47 |
| Msa0297920 | Msa1461820 | 0.807523 | 4.848458e-50 | -8.615850e-47 |
| Msa0317260 | Msa1461820 | 0.823585 | 1.279514e-53 | -8.615850e-47 |
| Msa0339860 | Msa1461820 | 0.821332 | 4.271885e-53 | -8.615850e-47 |
| Msa1112610 | Msa1461820 | 0.817945 | 2.533614e-52 | -8.615850e-47 |
| Msa1150970 | Msa1461820 | 0.810634 | 1.045732e-50 | -8.615850e-47 |
| Msa1175750 | Msa1461820 | 0.818381 | 2.019564e-52 | -8.615850e-47 |
| Msa1219250 | Msa1461820 | 0.810631 | 1.047210e-50 | -8.615850e-47 |
| Msa1223840 | Msa1461820 | 0.816935 | 4.278755e-52 | -8.615850e-47 |
| Msa0485280 | Msa1461820 | 0.812828 | 3.483341e-51 | -8.615850e-47 |
| Msa0510440 | Msa1461820 | 0.801446 | 8.970830e-49 | -8.615850e-47 |
| Msa0519200 | Msa1461820 | 0.834135 | 3.570518e-56 | -8.615850e-47 |
| Msa0532840 | Msa1461820 | 0.807886 | 4.060608e-50 | -8.615850e-47 |
| Msa0533010 | Msa1461820 | 0.806513 | 7.932666e-50 | -8.615850e-47 |
| Msa0538570 | Msa1461820 | 0.806403 | 8.368135e-50 | -8.615850e-47 |
| Msa0546740 | Msa1461820 | 0.806810 | 6.865920e-50 | -8.615850e-47 |
| Msa0578900 | Msa1461820 | 0.807794 | 4.246968e-50 | -8.615850e-47 |
| Msa0600390 | Msa1461820 | 0.808056 | 3.736073e-50 | -8.615850e-47 |
| Msa0852730 | Msa1461820 | 0.804203 | 2.418079e-49 | -8.615850e-47 |
| Msa0903330 | Msa1461820 | 0.803290 | 3.740793e-49 | -8.615850e-47 |
| Msa0922540 | Msa1461820 | 0.801226 | 9.950219e-49 | -8.615850e-47 |
| Msa0931480 | Msa1461820 | 0.813375 | 2.642651e-51 | -8.615850e-47 |
| Msa0942730 | Msa1461820 | 0.808737 | 2.673942e-50 | -8.615850e-47 |
| Msa0958020 | Msa1461820 | 0.839304 | 1.716708e-57 | -8.615850e-47 |
| Msa0965960 | Msa1461820 | 0.812947 | 3.280480e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461820 | MtrunA17_Chr1g0181961 | 95.000 | 140 | 6 | 1 | 1 | 139 | 1 | 140 | 4.56e-97 | 276 |
| Msa1461820 | MtrunA17_Chr0c01g0489161 | 94.286 | 140 | 8 | 0 | 1 | 140 | 1 | 140 | 2.00e-88 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461820 | AT5G02710.3 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 1.37e-50 | 159 |
| Msa1461820 | AT5G02710.2 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 1.37e-50 | 159 |
| Msa1461820 | AT5G02710.1 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 1.37e-50 | 159 |
Find 41 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTCTACAATAGCTTAAT+AGG | 0.218970 | tig0041758:-530 | Msa1461820:CDS |
| TGGGCACTGACCAGAGTAAA+TGG | 0.329466 | tig0041758:+460 | Msa1461820:intergenic |
| GTTTCCACCGTCTCAAAATC+AGG | 0.352865 | tig0041758:+1026 | Msa1461820:intergenic |
| GCTTGTTGTAAGCTTCAAAA+AGG | 0.360348 | tig0041758:-740 | Msa1461820:CDS |
| TAAACAGAAGAATTTCAATA+AGG | 0.371896 | tig0041758:-287 | Msa1461820:CDS |
| GAGGTGTTTGAATCTTTGTT+TGG | 0.380094 | tig0041758:-313 | Msa1461820:CDS |
| TTCTTCTTTGCCTTGATAGC+AGG | 0.397407 | tig0041758:+1004 | Msa1461820:intergenic |
| CATAAGGTAGTAAAATCTAA+TGG | 0.411369 | tig0041758:+937 | Msa1461820:intergenic |
| GGTGCTGCCGCCATTATCAT+TGG | 0.449696 | tig0041758:-891 | Msa1461820:CDS |
| GAACATGTGACCAATGATAA+TGG | 0.463503 | tig0041758:+881 | Msa1461820:intergenic |
| TGGCATTGCGTGCAAGGTTG+TGG | 0.476021 | tig0041758:-764 | Msa1461820:CDS |
| TCTTCAGGAGATGGATAAGA+AGG | 0.485774 | tig0041758:+716 | Msa1461820:intergenic |
| CGGCAGCACCAGAGTGGCGG+TGG | 0.489404 | tig0041758:+904 | Msa1461820:intergenic |
| TAATGTATACACCATCCATC+TGG | 0.496715 | tig0041758:+506 | Msa1461820:intergenic |
| ATCTCACACCACCGCCACTC+TGG | 0.504880 | tig0041758:-912 | Msa1461820:CDS |
| CGGTGGTGTGAGATATCATA+AGG | 0.511310 | tig0041758:+921 | Msa1461820:intergenic |
| ACGGTGGAAACCTGCTATCA+AGG | 0.511838 | tig0041758:-1014 | Msa1461820:five_prime_UTR |
| TTGTCGTGGCATTGCGTGCA+AGG | 0.513920 | tig0041758:-770 | Msa1461820:CDS |
| AGGTTTCAGCGGCGAGAAGA+AGG | 0.522187 | tig0041758:-795 | Msa1461820:CDS |
| AGAAAATGTTCCATTTACTC+TGG | 0.525786 | tig0041758:-470 | Msa1461820:intron |
| AAACAAAGGCAAAACAATGC+AGG | 0.531021 | tig0041758:-815 | Msa1461820:CDS |
| TACCGACCCTTCAGATGTTG+AGG | 0.536273 | tig0041758:-687 | Msa1461820:intron |
| AAATGGACCTCAACATCTGA+AGG | 0.540171 | tig0041758:+680 | Msa1461820:intergenic |
| ACAGAAGAATTTCAATAAGG+AGG | 0.546703 | tig0041758:-284 | Msa1461820:CDS |
| ATTTCAATAAGGAGGCATGC+AGG | 0.546848 | tig0041758:-276 | Msa1461820:CDS |
| AAAATCTAATGGAGTGTGGA+AGG | 0.547037 | tig0041758:+948 | Msa1461820:intergenic |
| AACAAAGATTCAAACACCTC+AGG | 0.567275 | tig0041758:+316 | Msa1461820:intergenic |
| TAGTAAAATCTAATGGAGTG+TGG | 0.575950 | tig0041758:+944 | Msa1461820:intergenic |
| AATAGCTTAATAGGACCAGA+TGG | 0.583134 | tig0041758:-521 | Msa1461820:CDS |
| CAAAACAATGCAGGTTTCAG+CGG | 0.589943 | tig0041758:-806 | Msa1461820:CDS |
| GACCTCAACATCTGAAGGGT+CGG | 0.594363 | tig0041758:+685 | Msa1461820:intergenic |
| ATCATTGGTCACATGTTCAG+CGG | 0.607004 | tig0041758:-876 | Msa1461820:CDS |
| GCTTAATAGGACCAGATGGA+TGG | 0.610306 | tig0041758:-517 | Msa1461820:CDS |
| TGGCGGCAGCACCAGAGTGG+CGG | 0.617659 | tig0041758:+901 | Msa1461820:intergenic |
| GCGTCGTCCACATACAACTA+CGG | 0.631589 | tig0041758:-852 | Msa1461820:CDS |
| AATGGACCTCAACATCTGAA+GGG | 0.668709 | tig0041758:+681 | Msa1461820:intergenic |
| CAAACACCTCAGGCTCCGCA+CGG | 0.675793 | tig0041758:+326 | Msa1461820:intergenic |
| GCGAGAAGAAGGAATTGTCG+TGG | 0.678840 | tig0041758:-784 | Msa1461820:CDS |
| TAATGGCGGCAGCACCAGAG+TGG | 0.679405 | tig0041758:+898 | Msa1461820:intergenic |
| TCAAAACCGACAGAAAACAA+AGG | 0.688446 | tig0041758:-829 | Msa1461820:CDS |
| CATGTGACCAATGATAATGG+CGG | 0.801428 | tig0041758:+884 | Msa1461810:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAACATAGAAAACAT+AGG | + | tig0041758:662-681 | Msa1461820:intergenic | 15.0% |
| !! | AATAAAAACATAGAAAACAT+AGG | + | tig0041758:662-681 | Msa1461820:intergenic | 15.0% |
| !! | TTATTTATGCTTTGATTATG+TGG | - | tig0041758:747-766 | Msa1461820:CDS | 20.0% |
| !! | TTGAATGTTATGATTTCTTA+TGG | - | tig0041758:901-920 | Msa1461820:CDS | 20.0% |
| !! | TGAATGTTATGATTTCTTAT+GGG | - | tig0041758:902-921 | Msa1461820:CDS | 20.0% |
| !! | TAAACAGAAGAATTTCAATA+AGG | - | tig0041758:1028-1047 | Msa1461820:five_prime_UTR | 20.0% |
| !! | TTATTTATGCTTTGATTATG+TGG | - | tig0041758:747-766 | Msa1461820:CDS | 20.0% |
| !! | TTGAATGTTATGATTTCTTA+TGG | - | tig0041758:901-920 | Msa1461820:CDS | 20.0% |
| !! | TGAATGTTATGATTTCTTAT+GGG | - | tig0041758:902-921 | Msa1461820:CDS | 20.0% |
| !! | TAAACAGAAGAATTTCAATA+AGG | - | tig0041758:1028-1047 | Msa1461820:five_prime_UTR | 20.0% |
| ! | CATAAGGTAGTAAAATCTAA+TGG | + | tig0041758:381-400 | Msa1461820:intergenic | 25.0% |
| ! | ACATAGAAAACATAGGAAAA+TGG | + | tig0041758:655-674 | Msa1461820:intergenic | 25.0% |
| !! | TTAGTATTTGTCTTTTACAC+TGG | - | tig0041758:715-734 | Msa1461820:CDS | 25.0% |
| ! | CATAAGGTAGTAAAATCTAA+TGG | + | tig0041758:381-400 | Msa1461820:intergenic | 25.0% |
| ! | ACATAGAAAACATAGGAAAA+TGG | + | tig0041758:655-674 | Msa1461820:intergenic | 25.0% |
| !! | TTAGTATTTGTCTTTTACAC+TGG | - | tig0041758:715-734 | Msa1461820:CDS | 25.0% |
| !! | GATAAATCCTGATTTTGAGA+CGG | - | tig0041758:282-301 | Msa1461820:CDS | 30.0% |
| TAGTAAAATCTAATGGAGTG+TGG | + | tig0041758:374-393 | Msa1461820:intergenic | 30.0% | |
| GTAAAAATTTCTTCAGGAGA+TGG | + | tig0041758:611-630 | Msa1461820:intergenic | 30.0% | |
| AGAAAATGTTCCATTTACTC+TGG | - | tig0041758:845-864 | Msa1461820:CDS | 30.0% | |
| !! | CATTCAAAACTTTAGAGTGA+TGG | + | tig0041758:888-907 | Msa1461820:intergenic | 30.0% |
| ACAGAAGAATTTCAATAAGG+AGG | - | tig0041758:1031-1050 | Msa1461820:five_prime_UTR | 30.0% | |
| !! | GATAAATCCTGATTTTGAGA+CGG | - | tig0041758:282-301 | Msa1461820:CDS | 30.0% |
| TAGTAAAATCTAATGGAGTG+TGG | + | tig0041758:374-393 | Msa1461820:intergenic | 30.0% | |
| GTAAAAATTTCTTCAGGAGA+TGG | + | tig0041758:611-630 | Msa1461820:intergenic | 30.0% | |
| AGAAAATGTTCCATTTACTC+TGG | - | tig0041758:845-864 | Msa1461820:CDS | 30.0% | |
| !! | CATTCAAAACTTTAGAGTGA+TGG | + | tig0041758:888-907 | Msa1461820:intergenic | 30.0% |
| ACAGAAGAATTTCAATAAGG+AGG | - | tig0041758:1031-1050 | Msa1461820:five_prime_UTR | 30.0% | |
| AAAATCTAATGGAGTGTGGA+AGG | + | tig0041758:370-389 | Msa1461820:intergenic | 35.0% | |
| GAACATGTGACCAATGATAA+TGG | + | tig0041758:437-456 | Msa1461820:intergenic | 35.0% | |
| TCAAAACCGACAGAAAACAA+AGG | - | tig0041758:486-505 | Msa1461820:CDS | 35.0% | |
| !!! | GTTTTGCCTTTGTTTTCTGT+CGG | + | tig0041758:495-514 | Msa1461820:intergenic | 35.0% |
| AAACAAAGGCAAAACAATGC+AGG | - | tig0041758:500-519 | Msa1461820:CDS | 35.0% | |
| !! | GCTTGTTGTAAGCTTCAAAA+AGG | - | tig0041758:575-594 | Msa1461820:intron | 35.0% |
| ATGCTTTGATTATGTGGCAA+TGG | - | tig0041758:753-772 | Msa1461820:CDS | 35.0% | |
| CAGCTCTACAATAGCTTAAT+AGG | - | tig0041758:785-804 | Msa1461820:CDS | 35.0% | |
| AATAGCTTAATAGGACCAGA+TGG | - | tig0041758:794-813 | Msa1461820:CDS | 35.0% | |
| TAATGTATACACCATCCATC+TGG | + | tig0041758:812-831 | Msa1461820:intergenic | 35.0% | |
| !! | AAAACTTTAGAGTGATGGTG+TGG | + | tig0041758:883-902 | Msa1461820:intergenic | 35.0% |
| ! | TCTTATGGGAATGTTAGCTT+TGG | - | tig0041758:916-935 | Msa1461820:CDS | 35.0% |
| AACAAAGATTCAAACACCTC+AGG | + | tig0041758:1002-1021 | Msa1461820:intergenic | 35.0% | |
| ! | GAGGTGTTTGAATCTTTGTT+TGG | - | tig0041758:1002-1021 | Msa1461820:five_prime_UTR | 35.0% |
| AAAATCTAATGGAGTGTGGA+AGG | + | tig0041758:370-389 | Msa1461820:intergenic | 35.0% | |
| GAACATGTGACCAATGATAA+TGG | + | tig0041758:437-456 | Msa1461820:intergenic | 35.0% | |
| TCAAAACCGACAGAAAACAA+AGG | - | tig0041758:486-505 | Msa1461820:CDS | 35.0% | |
| !!! | GTTTTGCCTTTGTTTTCTGT+CGG | + | tig0041758:495-514 | Msa1461820:intergenic | 35.0% |
| AAACAAAGGCAAAACAATGC+AGG | - | tig0041758:500-519 | Msa1461820:CDS | 35.0% | |
| !! | GCTTGTTGTAAGCTTCAAAA+AGG | - | tig0041758:575-594 | Msa1461820:intron | 35.0% |
| ATGCTTTGATTATGTGGCAA+TGG | - | tig0041758:753-772 | Msa1461820:CDS | 35.0% | |
| CAGCTCTACAATAGCTTAAT+AGG | - | tig0041758:785-804 | Msa1461820:CDS | 35.0% | |
| AATAGCTTAATAGGACCAGA+TGG | - | tig0041758:794-813 | Msa1461820:CDS | 35.0% | |
| TAATGTATACACCATCCATC+TGG | + | tig0041758:812-831 | Msa1461820:intergenic | 35.0% | |
| !! | AAAACTTTAGAGTGATGGTG+TGG | + | tig0041758:883-902 | Msa1461820:intergenic | 35.0% |
| ! | TCTTATGGGAATGTTAGCTT+TGG | - | tig0041758:916-935 | Msa1461820:CDS | 35.0% |
| AACAAAGATTCAAACACCTC+AGG | + | tig0041758:1002-1021 | Msa1461820:intergenic | 35.0% | |
| ! | GAGGTGTTTGAATCTTTGTT+TGG | - | tig0041758:1002-1021 | Msa1461820:five_prime_UTR | 35.0% |
| !!! | AAATCCTGATTTTGAGACGG+TGG | - | tig0041758:285-304 | Msa1461820:CDS | 40.0% |
| ! | TTCTTCTTTGCCTTGATAGC+AGG | + | tig0041758:314-333 | Msa1461820:intergenic | 40.0% |
| ! | AGTGTGGAAGGTTTTTGTAG+AGG | + | tig0041758:358-377 | Msa1461820:intergenic | 40.0% |
| !! | CATGTGACCAATGATAATGG+CGG | + | tig0041758:434-453 | Msa1461820:intergenic | 40.0% |
| ATCATTGGTCACATGTTCAG+CGG | - | tig0041758:439-458 | Msa1461820:intron | 40.0% | |
| !! | GTTTTGACCGTAGTTGTATG+TGG | + | tig0041758:473-492 | Msa1461820:intergenic | 40.0% |
| CAAAACAATGCAGGTTTCAG+CGG | - | tig0041758:509-528 | Msa1461820:CDS | 40.0% | |
| TCTTCAGGAGATGGATAAGA+AGG | + | tig0041758:602-621 | Msa1461820:intergenic | 40.0% | |
| GGGTCGGTAAAAATTTCTTC+AGG | + | tig0041758:617-636 | Msa1461820:intergenic | 40.0% | |
| AATGGACCTCAACATCTGAA+GGG | + | tig0041758:637-656 | Msa1461820:intergenic | 40.0% | |
| AAATGGACCTCAACATCTGA+AGG | + | tig0041758:638-657 | Msa1461820:intergenic | 40.0% | |
| ! | ATTTCAATAAGGAGGCATGC+AGG | - | tig0041758:1039-1058 | Msa1461820:five_prime_UTR | 40.0% |
| ! | TTTCAATAAGGAGGCATGCA+GGG | - | tig0041758:1040-1059 | Msa1461820:five_prime_UTR | 40.0% |
| !!! | AAATCCTGATTTTGAGACGG+TGG | - | tig0041758:285-304 | Msa1461820:CDS | 40.0% |
| ! | TTCTTCTTTGCCTTGATAGC+AGG | + | tig0041758:314-333 | Msa1461820:intergenic | 40.0% |
| ! | AGTGTGGAAGGTTTTTGTAG+AGG | + | tig0041758:358-377 | Msa1461820:intergenic | 40.0% |
| !! | CATGTGACCAATGATAATGG+CGG | + | tig0041758:434-453 | Msa1461820:intergenic | 40.0% |
| ATCATTGGTCACATGTTCAG+CGG | - | tig0041758:439-458 | Msa1461820:intron | 40.0% | |
| !! | GTTTTGACCGTAGTTGTATG+TGG | + | tig0041758:473-492 | Msa1461820:intergenic | 40.0% |
| CAAAACAATGCAGGTTTCAG+CGG | - | tig0041758:509-528 | Msa1461820:CDS | 40.0% | |
| TCTTCAGGAGATGGATAAGA+AGG | + | tig0041758:602-621 | Msa1461820:intergenic | 40.0% | |
| GGGTCGGTAAAAATTTCTTC+AGG | + | tig0041758:617-636 | Msa1461820:intergenic | 40.0% | |
| AATGGACCTCAACATCTGAA+GGG | + | tig0041758:637-656 | Msa1461820:intergenic | 40.0% | |
| AAATGGACCTCAACATCTGA+AGG | + | tig0041758:638-657 | Msa1461820:intergenic | 40.0% | |
| GTTTCCACCGTCTCAAAATC+AGG | + | tig0041758:292-311 | Msa1461820:intergenic | 45.0% | |
| CGGTGGTGTGAGATATCATA+AGG | + | tig0041758:397-416 | Msa1461820:intergenic | 45.0% | |
| GCTTAATAGGACCAGATGGA+TGG | - | tig0041758:798-817 | Msa1461820:CDS | 45.0% | |
| ! | TTAGAGTGATGGTGTGGTGT+GGG | + | tig0041758:877-896 | Msa1461820:intergenic | 45.0% |
| ! | TTTAGAGTGATGGTGTGGTG+TGG | + | tig0041758:878-897 | Msa1461820:intergenic | 45.0% |
| ! | TTCAATAAGGAGGCATGCAG+GGG | - | tig0041758:1041-1060 | Msa1461820:five_prime_UTR | 45.0% |
| GTTTCCACCGTCTCAAAATC+AGG | + | tig0041758:292-311 | Msa1461820:intergenic | 45.0% | |
| CGGTGGTGTGAGATATCATA+AGG | + | tig0041758:397-416 | Msa1461820:intergenic | 45.0% | |
| GCTTAATAGGACCAGATGGA+TGG | - | tig0041758:798-817 | Msa1461820:CDS | 45.0% | |
| ! | TTAGAGTGATGGTGTGGTGT+GGG | + | tig0041758:877-896 | Msa1461820:intergenic | 45.0% |
| ! | TTTAGAGTGATGGTGTGGTG+TGG | + | tig0041758:878-897 | Msa1461820:intergenic | 45.0% |
| ACGGTGGAAACCTGCTATCA+AGG | - | tig0041758:301-320 | Msa1461820:CDS | 50.0% | |
| GCGTCGTCCACATACAACTA+CGG | - | tig0041758:463-482 | Msa1461820:intron | 50.0% | |
| GCGAGAAGAAGGAATTGTCG+TGG | - | tig0041758:531-550 | Msa1461820:intron | 50.0% | |
| TACCGACCCTTCAGATGTTG+AGG | - | tig0041758:628-647 | Msa1461820:intron | 50.0% | |
| GACCTCAACATCTGAAGGGT+CGG | + | tig0041758:633-652 | Msa1461820:intergenic | 50.0% | |
| !! | TGGGCACTGACCAGAGTAAA+TGG | + | tig0041758:858-877 | Msa1461820:intergenic | 50.0% |
| ACGGTGGAAACCTGCTATCA+AGG | - | tig0041758:301-320 | Msa1461820:CDS | 50.0% | |
| GCGTCGTCCACATACAACTA+CGG | - | tig0041758:463-482 | Msa1461820:intron | 50.0% | |
| GCGAGAAGAAGGAATTGTCG+TGG | - | tig0041758:531-550 | Msa1461820:intron | 50.0% | |
| TACCGACCCTTCAGATGTTG+AGG | - | tig0041758:628-647 | Msa1461820:intron | 50.0% | |
| GACCTCAACATCTGAAGGGT+CGG | + | tig0041758:633-652 | Msa1461820:intergenic | 50.0% | |
| !! | TGGGCACTGACCAGAGTAAA+TGG | + | tig0041758:858-877 | Msa1461820:intergenic | 50.0% |
| ! | GGTGCTGCCGCCATTATCAT+TGG | - | tig0041758:424-443 | Msa1461820:intron | 55.0% |
| AGGTTTCAGCGGCGAGAAGA+AGG | - | tig0041758:520-539 | Msa1461820:CDS | 55.0% | |
| TTGTCGTGGCATTGCGTGCA+AGG | - | tig0041758:545-564 | Msa1461820:intron | 55.0% | |
| TGGCATTGCGTGCAAGGTTG+TGG | - | tig0041758:551-570 | Msa1461820:intron | 55.0% | |
| !! | GCGTCCGTATTTTTGCCGTG+CGG | - | tig0041758:974-993 | Msa1461820:five_prime_UTR | 55.0% |
| GGCTCCGCACGGCAAAAATA+CGG | + | tig0041758:981-1000 | Msa1461820:intergenic | 55.0% | |
| ! | GGTGCTGCCGCCATTATCAT+TGG | - | tig0041758:424-443 | Msa1461820:intron | 55.0% |
| AGGTTTCAGCGGCGAGAAGA+AGG | - | tig0041758:520-539 | Msa1461820:CDS | 55.0% | |
| TTGTCGTGGCATTGCGTGCA+AGG | - | tig0041758:545-564 | Msa1461820:intron | 55.0% | |
| TGGCATTGCGTGCAAGGTTG+TGG | - | tig0041758:551-570 | Msa1461820:intron | 55.0% | |
| !! | GCGTCCGTATTTTTGCCGTG+CGG | - | tig0041758:974-993 | Msa1461820:five_prime_UTR | 55.0% |
| GGCTCCGCACGGCAAAAATA+CGG | + | tig0041758:981-1000 | Msa1461820:intergenic | 55.0% | |
| ATCTCACACCACCGCCACTC+TGG | - | tig0041758:403-422 | Msa1461820:intron | 60.0% | |
| TAATGGCGGCAGCACCAGAG+TGG | + | tig0041758:420-439 | Msa1461820:intergenic | 60.0% | |
| ! | TTTTTGCCGTGCGGAGCCTG+AGG | - | tig0041758:983-1002 | Msa1461820:five_prime_UTR | 60.0% |
| CAAACACCTCAGGCTCCGCA+CGG | + | tig0041758:992-1011 | Msa1461820:intergenic | 60.0% | |
| ATCTCACACCACCGCCACTC+TGG | - | tig0041758:403-422 | Msa1461820:intron | 60.0% | |
| TAATGGCGGCAGCACCAGAG+TGG | + | tig0041758:420-439 | Msa1461820:intergenic | 60.0% | |
| ! | TTTTTGCCGTGCGGAGCCTG+AGG | - | tig0041758:983-1002 | Msa1461820:five_prime_UTR | 60.0% |
| CAAACACCTCAGGCTCCGCA+CGG | + | tig0041758:992-1011 | Msa1461820:intergenic | 60.0% | |
| TGGCGGCAGCACCAGAGTGG+CGG | + | tig0041758:417-436 | Msa1461820:intergenic | 70.0% | |
| TGGCGGCAGCACCAGAGTGG+CGG | + | tig0041758:417-436 | Msa1461820:intergenic | 70.0% | |
| CGGCAGCACCAGAGTGGCGG+TGG | + | tig0041758:414-433 | Msa1461820:intergenic | 75.0% | |
| CGGCAGCACCAGAGTGGCGG+TGG | + | tig0041758:414-433 | Msa1461820:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041758 | gene | 276 | 1061 | 276 | ID=Msa1461820;Name=Msa1461820 |
| tig0041758 | mRNA | 276 | 1061 | 276 | ID=Msa1461820-mRNA-1;Parent=Msa1461820;Name=Msa1461820-mRNA-1;_AED=0.11;_eAED=0.11;_QI=122|1|0.66|1|1|1|3|0|140 |
| tig0041758 | exon | 276 | 364 | 276 | ID=Msa1461820-mRNA-1:exon:23370;Parent=Msa1461820-mRNA-1 |
| tig0041758 | exon | 471 | 549 | 471 | ID=Msa1461820-mRNA-1:exon:23369;Parent=Msa1461820-mRNA-1 |
| tig0041758 | exon | 688 | 1061 | 688 | ID=Msa1461820-mRNA-1:exon:23368;Parent=Msa1461820-mRNA-1 |
| tig0041758 | five_prime_UTR | 940 | 1061 | 940 | ID=Msa1461820-mRNA-1:five_prime_utr;Parent=Msa1461820-mRNA-1 |
| tig0041758 | CDS | 688 | 939 | 688 | ID=Msa1461820-mRNA-1:cds;Parent=Msa1461820-mRNA-1 |
| tig0041758 | CDS | 471 | 549 | 471 | ID=Msa1461820-mRNA-1:cds;Parent=Msa1461820-mRNA-1 |
| tig0041758 | CDS | 276 | 364 | 276 | ID=Msa1461820-mRNA-1:cds;Parent=Msa1461820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
