AlfalfaGEDB | Msa1461820

M. sativa cultivar zhongmu-4 / Msa1461820

KEGG: K06940
GO: -
PFAM: PF03692.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1461820	XP_013468284.1	95.000	140	6	1	1	139	1	140	4.95e-93	276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1461820	A0A072VL41	95.000	140	6	1	1	139	1	140	2.37e-93	276

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1461820	0.839917	1.189151e-57	-8.615850e-47
Msa0007450	Msa1461820	0.814609	1.412389e-51	-8.615850e-47
Msa0017120	Msa1461820	0.812023	5.222803e-51	-8.615850e-47
Msa0065390	Msa1461820	0.814350	1.610967e-51	-8.615850e-47
Msa0089210	Msa1461820	0.817079	3.970536e-52	-8.615850e-47
Msa0110710	Msa1461820	0.810887	9.216132e-51	-8.615850e-47
Msa0122210	Msa1461820	0.806633	7.483846e-50	-8.615850e-47
Msa0135980	Msa1461820	0.807398	5.153142e-50	-8.615850e-47
Msa0146470	Msa1461820	0.831596	1.525942e-55	-8.615850e-47
Msa0157020	Msa1461820	0.819069	1.409148e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1461820	MtrunA17_Chr1g0181961	95.000	140	6	1	1	139	1	140	4.56e-97	276
Msa1461820	MtrunA17_Chr0c01g0489161	94.286	140	8	0	1	140	1	140	2.00e-88	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1461820	AT5G02710.3	54.015	137	56	3	9	138	7	143	1.37e-50	159
Msa1461820	AT5G02710.2	54.015	137	56	3	9	138	7	143	1.37e-50	159
Msa1461820	AT5G02710.1	54.015	137	56	3	9	138	7	143	1.37e-50	159

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Find 41 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTAATGGAGTGTGGA+AGG	0.547037	tig0041758:+948	Msa1461820:intergenic
AAACAAAGGCAAAACAATGC+AGG	0.531021	tig0041758:-815	Msa1461820:CDS
AAATGGACCTCAACATCTGA+AGG	0.540171	tig0041758:+680	Msa1461820:intergenic
AACAAAGATTCAAACACCTC+AGG	0.567275	tig0041758:+316	Msa1461820:intergenic
AATAGCTTAATAGGACCAGA+TGG	0.583134	tig0041758:-521	Msa1461820:CDS
AATGGACCTCAACATCTGAA+GGG	0.668709	tig0041758:+681	Msa1461820:intergenic
ACAGAAGAATTTCAATAAGG+AGG	0.546703	tig0041758:-284	Msa1461820:CDS
ACGGTGGAAACCTGCTATCA+AGG	0.511838	tig0041758:-1014	Msa1461820:five_prime_UTR
AGAAAATGTTCCATTTACTC+TGG	0.525786	tig0041758:-470	Msa1461820:intron
AGGTTTCAGCGGCGAGAAGA+AGG	0.522187	tig0041758:-795	Msa1461820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAAAATCTAATGGAGTG+TGG	+	tig0041758:374-393	Msa1461820:intergenic	30.0%
GTAAAAATTTCTTCAGGAGA+TGG	+	tig0041758:611-630	Msa1461820:intergenic	30.0%
AGAAAATGTTCCATTTACTC+TGG	-	tig0041758:845-864	Msa1461820:CDS	30.0%
ACAGAAGAATTTCAATAAGG+AGG	-	tig0041758:1031-1050	Msa1461820:five_prime_UTR	30.0%
TAGTAAAATCTAATGGAGTG+TGG	+	tig0041758:374-393	Msa1461820:intergenic	30.0%
GTAAAAATTTCTTCAGGAGA+TGG	+	tig0041758:611-630	Msa1461820:intergenic	30.0%
AGAAAATGTTCCATTTACTC+TGG	-	tig0041758:845-864	Msa1461820:CDS	30.0%
ACAGAAGAATTTCAATAAGG+AGG	-	tig0041758:1031-1050	Msa1461820:five_prime_UTR	30.0%
AAAATCTAATGGAGTGTGGA+AGG	+	tig0041758:370-389	Msa1461820:intergenic	35.0%
GAACATGTGACCAATGATAA+TGG	+	tig0041758:437-456	Msa1461820:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0041758	gene	276	1061	276	ID=Msa1461820;Name=Msa1461820
tig0041758	mRNA	276	1061	276	ID=Msa1461820-mRNA-1;Parent=Msa1461820;Name=Msa1461820-mRNA-1;_AED=0.11;_eAED=0.11;_QI=122\|1\|0.66\|1\|1\|1\|3\|0\|140
tig0041758	exon	276	364	276	ID=Msa1461820-mRNA-1:exon:23370;Parent=Msa1461820-mRNA-1
tig0041758	exon	471	549	471	ID=Msa1461820-mRNA-1:exon:23369;Parent=Msa1461820-mRNA-1
tig0041758	exon	688	1061	688	ID=Msa1461820-mRNA-1:exon:23368;Parent=Msa1461820-mRNA-1
tig0041758	five_prime_UTR	940	1061	940	ID=Msa1461820-mRNA-1:five_prime_utr;Parent=Msa1461820-mRNA-1
tig0041758	CDS	688	939	688	ID=Msa1461820-mRNA-1:cds;Parent=Msa1461820-mRNA-1
tig0041758	CDS	471	549	471	ID=Msa1461820-mRNA-1:cds;Parent=Msa1461820-mRNA-1
tig0041758	CDS	276	364	276	ID=Msa1461820-mRNA-1:cds;Parent=Msa1461820-mRNA-1

Gene Sequence

>Msa1461820

ATGATATCTCACACCACCGCCACTCTGGTGCTGCCGCCATTATCATTGGTCACATGTTCAGCGGCGCGTCGTCCACATACAACTACGGTCAAAACCGACAGAAAACAAAGGCAAAACAATGCAGGTTTCAGCGGCGAGAAGAAGGAATTGTCGTGGCATTGCGTGCAAGGTTGTGGTGCTTGTTGTAAGCTTCAAAAAGGTCCTTCTTATCCATCTCCTGAAGAAATTTTTACCGACCCTTCAGATGTTGAGCTCTACAATAGCTTAATAGGACCAGATGGATGGTGTATACATTATGAAAAGAGTAGCAGAAAATGTTCCATTTACTCTGAGCGTCCGTATTTTTGCCGTGCGGAGCCTGAGGTGTTTGAATCTTTGTTTGGAGTTAAACAGAAGAATTTCAATAAGGAGGCATGCAGG

Protein sequence

>Msa1461820

MISHTTATLVLPPLSLVTCSAARRPHTTTVKTDRKQRQNNAGFSGEKKELSWHCVQGCGACCKLQKGPSYPSPEEIFTDPSDVELYNSLIGPDGWCIHYEKSSRKCSIYSERPYFCRAEPEVFESLFGVKQKNFNKEACR