AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607480 MtrunA17_Chr4g0039081 98.916 369 4 0 1 369 1 369 0.0 743
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607480 AT5G08280.1 80.352 341 56 2 37 369 45 382 0.0 561

Find 112 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAAAACTTCACTATTTC+AGG 0.139531 4_2:+54280923 None:intergenic
ATTGCAATTGGCAATGTAAT+TGG 0.182846 4_2:-54284011 Msa0607480:five_prime_UTR
CAATAGGTGGTTCTGGATTC+TGG 0.184578 4_2:-54280878 Msa0607480:three_prime_UTR
ATAGATGAAGCACTCATAAA+TGG 0.266891 4_2:-54282729 Msa0607480:CDS
CTACCGGCTGGAAGTGTTAT+TGG 0.289880 4_2:-54282570 Msa0607480:CDS
AATTCTAATAATCGCAGTTT+TGG 0.297866 4_2:+54283660 None:intergenic
GAAATTTCAATAGGTGGTTC+TGG 0.300079 4_2:-54280885 Msa0607480:three_prime_UTR
CTGATACGACATTTGGAAAA+AGG 0.322162 4_2:+54283718 None:intergenic
TCTTGCCGAACGCCTATTGC+AGG 0.323184 4_2:-54281402 Msa0607480:CDS
GGCTATTCCAATTGCACCTT+GGG 0.335647 4_2:+54281871 None:intergenic
GATGGAAATTGCTTGTTTAG+AGG 0.343657 4_2:-54281360 Msa0607480:CDS
GAAGGATTGGAAGGTGTAGA+AGG 0.351735 4_2:+54283790 None:intergenic
GTGCTTGAAACTTCCAGAAT+TGG 0.358982 4_2:-54281221 Msa0607480:CDS
AGTTGTCAAAGCTACCTTAT+TGG 0.360503 4_2:-54281975 Msa0607480:CDS
AGTGTTGAAACTTATAATCT+AGG 0.369974 4_2:+54281104 None:intergenic
CAGTCCAGCTAGAGCCAATA+AGG 0.371368 4_2:+54281961 None:intergenic
TAGAAGTAATGATGATAAAA+TGG 0.372536 4_2:-54281846 Msa0607480:intron
AAAACTGCGATTATTAGAAT+TGG 0.380075 4_2:-54283658 Msa0607480:CDS
CTTCTTTCTCGAGCTGGACC+TGG 0.382803 4_2:-54281146 Msa0607480:CDS
ATAAGCATAAGGACCAATTC+TGG 0.397488 4_2:+54281208 None:intergenic
GAGAAGGAAAGGGGAAGGAT+TGG 0.401621 4_2:+54283777 None:intergenic
CTTAACACGGAAATTTCAAT+AGG 0.404152 4_2:-54280894 Msa0607480:three_prime_UTR
TTTCAACTGAACTCCTCATC+AGG 0.407221 4_2:-54281006 Msa0607480:three_prime_UTR
TTAGAGCAGTCCACTAGCTT+TGG 0.407368 4_2:-54282907 Msa0607480:intron
TTTATCATCATTACTTCTAC+AGG 0.410377 4_2:+54281850 None:intergenic
TTGCAATTGGCAATGTAATT+GGG 0.414516 4_2:-54284010 Msa0607480:five_prime_UTR
AAGAGCCTTCCTTACGACTT+TGG 0.415933 4_2:-54281430 Msa0607480:CDS
GCTGTTGCCCAAGGTGCAAT+TGG 0.417047 4_2:-54281878 Msa0607480:CDS
TAGATGAAGCACTCATAAAT+GGG 0.423935 4_2:-54282728 Msa0607480:CDS
CTGCTAGCATACCCTGCAAT+AGG 0.427411 4_2:+54281390 None:intergenic
CTCAATCGGTAACACAGATA+TGG 0.428500 4_2:-54281083 Msa0607480:three_prime_UTR
TTCATACCACGGGTTCCATC+GGG 0.433712 4_2:+54281324 None:intergenic
TTGAAATTTCCGTGTTAAGC+AGG 0.434990 4_2:+54280898 None:intergenic
GGAAGCTCTGATACGACATT+TGG 0.445537 4_2:+54283711 None:intergenic
TGAACTATTTCACACTCAAA+TGG 0.448638 4_2:-54283848 Msa0607480:exon
ACATATAATAAGATTGCAAT+TGG 0.449693 4_2:-54284023 None:intergenic
AGAATGCAGAAGAGGAAGAA+AGG 0.466442 4_2:+54283818 None:intergenic
AATCTGAATAGCCCCTTCTT+CGG 0.467642 4_2:+54282833 None:intergenic
GAGGAGCTTCTTTCTCGAGC+TGG 0.476446 4_2:-54281152 Msa0607480:CDS
CATACAGAGTTAGCCGAAGA+AGG 0.479546 4_2:-54282846 Msa0607480:CDS
ATCATATCTTCATAAGCATA+AGG 0.480067 4_2:+54281197 None:intergenic
GCCTTCCTTACGACTTTGGA+TGG 0.480690 4_2:-54281426 Msa0607480:CDS
TATAAGTTTCAACACTCAAT+CGG 0.487974 4_2:-54281097 Msa0607480:three_prime_UTR
ATTGCACCTTGGGCAACAGC+TGG 0.489725 4_2:+54281881 None:intergenic
GTTCATACCACGGGTTCCAT+CGG 0.490215 4_2:+54281323 None:intergenic
GAATGCAGAAGAGGAAGAAA+GGG 0.492559 4_2:+54283819 None:intergenic
GATGGGTAAGGATGCGGGTG+AGG 0.498552 4_2:-54281171 Msa0607480:CDS
GCTACCTTATTGGCTCTAGC+TGG 0.499498 4_2:-54281965 Msa0607480:CDS
ATGAAGATGGGTAAGGATGC+GGG 0.500619 4_2:-54281176 Msa0607480:CDS
CAAGAAGAACTGAGAAGGAA+AGG 0.502363 4_2:+54283766 None:intergenic
AAGAAGAACTGAGAAGGAAA+GGG 0.502979 4_2:+54283767 None:intergenic
AGGAAGAGAGAATGCAGAAG+AGG 0.515566 4_2:+54283810 None:intergenic
ATTGGCAATGTAATTGGGTA+AGG 0.515612 4_2:-54284005 Msa0607480:five_prime_UTR
AGGAAAGGGGAAGGATTGGA+AGG 0.521629 4_2:+54283781 None:intergenic
ATCTCTAAGATAGAGCTTGT+GGG 0.525074 4_2:+54283977 None:intergenic
TCCTCTCGTGGAAGGTTGCA+TGG 0.526187 4_2:+54282639 None:intergenic
AGGCTATTCCAATTGCACCT+TGG 0.526245 4_2:+54281870 None:intergenic
AACACGGAAATTTCAATAGG+TGG 0.527729 4_2:-54280891 Msa0607480:three_prime_UTR
CGTAAGGAAGGCTCTTTCAC+AGG 0.530222 4_2:+54281437 None:intergenic
GATCTCTAAGATAGAGCTTG+TGG 0.534871 4_2:+54283976 None:intergenic
GAACTGAGAAGGAAAGGGGA+AGG 0.541355 4_2:+54283772 None:intergenic
TTGGTACCGCATCACTTAGA+CGG 0.546923 4_2:-54282551 Msa0607480:CDS
TCCGTGGAAATGTGCAAACA+AGG 0.548138 4_2:-54282018 Msa0607480:CDS
CTCTGACATCCTCTCGTGGA+AGG 0.548713 4_2:+54282631 None:intergenic
TCACTAGGTGATCTACCGGC+TGG 0.549656 4_2:-54282582 Msa0607480:CDS
TCGCAACCGCTTGCAGACAT+AGG 0.549665 4_2:-54282777 Msa0607480:CDS
GCCTTGTTTGCACATTTCCA+CGG 0.551589 4_2:+54282017 None:intergenic
TTAGAATTGGTACTAGAGGA+AGG 0.555106 4_2:-54283645 Msa0607480:intron
GCAACAATTAAAATATATGT+TGG 0.555727 4_2:-54280846 Msa0607480:three_prime_UTR
ATACAGAGTTAGCCGAAGAA+GGG 0.556716 4_2:-54282845 Msa0607480:CDS
AGCTTCACTAGGTGATCTAC+CGG 0.558112 4_2:-54282586 Msa0607480:CDS
GATGAAGATGGGTAAGGATG+CGG 0.558385 4_2:-54281177 Msa0607480:CDS
CATACCCTGCAATAGGCGTT+CGG 0.559656 4_2:+54281397 None:intergenic
CAGTCCACTAGCTTTGGCTC+AGG 0.560597 4_2:-54282901 Msa0607480:CDS
CAACCGCTTGCAGACATAGG+TGG 0.565596 4_2:-54282774 Msa0607480:CDS
TATGAAGATATGATGAAGAT+GGG 0.569266 4_2:-54281188 Msa0607480:CDS
CACCAGCTTACACTTAGAGA+TGG 0.571883 4_2:+54282504 None:intergenic
GCCATGCAACCTTCCACGAG+AGG 0.571886 4_2:-54282640 Msa0607480:CDS
GCAATGTAATTGGGTAAGGT+AGG 0.575938 4_2:-54284001 Msa0607480:five_prime_UTR
TGTGCCTGAGCCAAAGCTAG+TGG 0.577115 4_2:+54282897 None:intergenic
ACCATCCAAAGTCGTAAGGA+AGG 0.584751 4_2:+54281425 None:intergenic
ATTATTAGAATTGGTACTAG+AGG 0.585168 4_2:-54283649 Msa0607480:CDS
TTTAGAATTCCTGCTTAACA+CGG 0.586071 4_2:-54280907 Msa0607480:three_prime_UTR
AACCGCTTGCAGACATAGGT+GGG 0.586462 4_2:-54282773 Msa0607480:CDS
AAGAACCATCCAAAGTCGTA+AGG 0.589630 4_2:+54281421 None:intergenic
TTATGAAGATATGATGAAGA+TGG 0.590771 4_2:-54281189 Msa0607480:CDS
GCTTGCAGACATAGGTGGGA+AGG 0.591309 4_2:-54282769 Msa0607480:CDS
TCATTGAGTGCAGCTTCACT+AGG 0.592878 4_2:-54282597 Msa0607480:CDS
TGATTTCCGTCTAAGTGATG+CGG 0.594402 4_2:+54282545 None:intergenic
CTTGCCGAACGCCTATTGCA+GGG 0.597053 4_2:-54281401 Msa0607480:CDS
CGTCTGTTGCTCAACAGCAA+CGG 0.602185 4_2:+54283690 None:intergenic
ATGCTTCCAGCTGTTGCCCA+AGG 0.607443 4_2:-54281887 Msa0607480:CDS
AGGGACAAGAAGAACTGAGA+AGG 0.608902 4_2:+54283761 None:intergenic
AGATATGATGAAGATGGGTA+AGG 0.614306 4_2:-54281183 Msa0607480:CDS
GCATCTCTGACATCCTCTCG+TGG 0.614964 4_2:+54282627 None:intergenic
TTCCCACCTATGTCTGCAAG+CGG 0.617157 4_2:+54282771 None:intergenic
AAGGCTTAGAAAACTAAGTG+AGG 0.619745 4_2:-54281999 Msa0607480:CDS
CACTTAGAGATGGATATCTG+TGG 0.621615 4_2:+54282514 None:intergenic
AGAAGAACTGAGAAGGAAAG+GGG 0.621960 4_2:+54283768 None:intergenic
TACAGAGTTAGCCGAAGAAG+GGG 0.622163 4_2:-54282844 Msa0607480:CDS
CTTGCAGACATAGGTGGGAA+GGG 0.623209 4_2:-54282768 Msa0607480:CDS
CATACCACGGGTTCCATCGG+GGG 0.623605 4_2:+54281326 None:intergenic
AGGCTTAGAAAACTAAGTGA+GGG 0.625173 4_2:-54281998 Msa0607480:CDS
ACAACAATTTGATCCTGATG+AGG 0.645416 4_2:+54280993 None:intergenic
CAGGTGCAAGATAATTTCCG+TGG 0.647977 4_2:-54282034 Msa0607480:CDS
AGGGTATGCTAGCAGAGACA+AGG 0.654347 4_2:-54281382 Msa0607480:CDS
ATCGGTAACACAGATATGGT+AGG 0.655211 4_2:-54281079 Msa0607480:three_prime_UTR
TATGCTAGCAGAGACAAGGA+TGG 0.659151 4_2:-54281378 Msa0607480:CDS
AGATGAAGCACTCATAAATG+GGG 0.661644 4_2:-54282727 Msa0607480:CDS
TTAGAGATGGATATCTGTGG+AGG 0.669578 4_2:+54282517 None:intergenic
TCATACCACGGGTTCCATCG+GGG 0.679110 4_2:+54281325 None:intergenic
GTACCAATAACACTTCCAGC+CGG 0.706296 4_2:+54282567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAATCAATAATAAT+CGG + chr4_2:54282631-54282650 None:intergenic 10.0%
!! CAATAAATATTACAAAAATT+TGG + chr4_2:54283758-54283777 None:intergenic 10.0%
!!! TTTTTTGGCATTTATTTTAA+TGG - chr4_2:54281299-54281318 Msa0607480:intron 15.0%
!!! TTTTTGGCATTTATTTTAAT+GGG - chr4_2:54281300-54281319 Msa0607480:intron 15.0%
!! TAAAACAAAATACTGATATA+TGG + chr4_2:54281488-54281507 None:intergenic 15.0%
!!! TTAGAAGATAATTTTAGAAA+GGG - chr4_2:54281561-54281580 Msa0607480:intron 15.0%
!! AATCATTTAACTAATAGTAT+GGG + chr4_2:54281732-54281751 None:intergenic 15.0%
!! TAATCATTTAACTAATAGTA+TGG + chr4_2:54281733-54281752 None:intergenic 15.0%
!! ATTGTAATAATAAAAACAAC+CGG - chr4_2:54281890-54281909 Msa0607480:CDS 15.0%
!!! AAATCATAATCATTTTCTAA+TGG - chr4_2:54282273-54282292 Msa0607480:intron 15.0%
!!! AATCATAATCATTTTCTAAT+GGG - chr4_2:54282274-54282293 Msa0607480:intron 15.0%
!! AATATAAATTCTCAGATATT+GGG + chr4_2:54283081-54283100 None:intergenic 15.0%
!!! TCAAATTGTTGTATTTTATT+AGG - chr4_2:54283721-54283740 Msa0607480:CDS 15.0%
!!! TTTGCAATTTCAAAATTTTT+AGG + chr4_2:54283933-54283952 None:intergenic 15.0%
!!! AAATTTTGAAATTGCAAAAA+AGG - chr4_2:54283935-54283954 Msa0607480:five_prime_UTR 15.0%
!!! AATTTTGAAATTGCAAAAAA+GGG - chr4_2:54283936-54283955 Msa0607480:five_prime_UTR 15.0%
!!! CTCAAATTTGCATTTTTTTT+TGG - chr4_2:54281284-54281303 Msa0607480:intron 20.0%
!!! ATTGTTATTGTCAAAAGAAA+AGG - chr4_2:54281409-54281428 Msa0607480:CDS 20.0%
!!! TTGTTATTGTCAAAAGAAAA+GGG - chr4_2:54281410-54281429 Msa0607480:CDS 20.0%
!!! CTTAGAAGATAATTTTAGAA+AGG - chr4_2:54281560-54281579 Msa0607480:intron 20.0%
!! TAACAAAAGAAACCAAATAT+GGG + chr4_2:54281678-54281697 None:intergenic 20.0%
!! ATAACAAAAGAAACCAAATA+TGG + chr4_2:54281679-54281698 None:intergenic 20.0%
!!! ATATTTGGTTTCTTTTGTTA+TGG - chr4_2:54281678-54281697 Msa0607480:intron 20.0%
!! TTGAGTTAATAAACAAACAT+TGG - chr4_2:54282343-54282362 Msa0607480:intron 20.0%
!! TAGACAATAGCTATATAAAA+AGG + chr4_2:54282492-54282511 None:intergenic 20.0%
!! TAGAAGTAATGATGATAAAA+TGG - chr4_2:54282857-54282876 Msa0607480:CDS 20.0%
!! ATATAAATTCTCAGATATTG+GGG + chr4_2:54283080-54283099 None:intergenic 20.0%
!! CAATATAAATTCTCAGATAT+TGG + chr4_2:54283082-54283101 None:intergenic 20.0%
!!! ATCTGAAATATTTCAATTCA+AGG - chr4_2:54283117-54283136 Msa0607480:intron 20.0%
!! TATTAACTATTGAAAAAACC+AGG + chr4_2:54283578-54283597 None:intergenic 20.0%
!!! TATTATCAGAGCTTTTAAAA+TGG - chr4_2:54283650-54283669 Msa0607480:CDS 20.0%
!!! ATTATCAGAGCTTTTAAAAT+GGG - chr4_2:54283651-54283670 Msa0607480:CDS 20.0%
!! TTGAAAAAGAATAACAAACT+AGG + chr4_2:54283683-54283702 None:intergenic 20.0%
!! GCAACAATTAAAATATATGT+TGG - chr4_2:54283857-54283876 Msa0607480:five_prime_UTR 20.0%
!! AATTCTAATAATCGCAGTTT+TGG + chr4_2:54281046-54281065 None:intergenic 25.0%
! AAAACTGCGATTATTAGAAT+TGG - chr4_2:54281045-54281064 Msa0607480:three_prime_UTR 25.0%
! ATTATTAGAATTGGTACTAG+AGG - chr4_2:54281054-54281073 Msa0607480:three_prime_UTR 25.0%
!!! TTTGACTTTTTTTATGCTTC+TGG - chr4_2:54281154-54281173 Msa0607480:CDS 25.0%
!!! TTGACTTTTTTTATGCTTCT+GGG - chr4_2:54281155-54281174 Msa0607480:CDS 25.0%
! TGTTATTGTCAAAAGAAAAG+GGG - chr4_2:54281411-54281430 Msa0607480:CDS 25.0%
! AAGAAAATCAATCCCATATT+TGG - chr4_2:54281663-54281682 Msa0607480:intron 25.0%
! ATTATGAATGCTTTCATTGT+TGG - chr4_2:54281749-54281768 Msa0607480:intron 25.0%
! ATTTGACGTAAAAACCAATA+TGG + chr4_2:54282257-54282276 None:intergenic 25.0%
! AGCATTTAATGCATTCATAA+TGG - chr4_2:54282316-54282335 Msa0607480:intron 25.0%
! AGAAGAAAAATAACGAAAGA+AGG + chr4_2:54282530-54282549 None:intergenic 25.0%
!!! ATTTCTGTCATTTAGCTTTA+TGG - chr4_2:54282597-54282616 Msa0607480:CDS 25.0%
! CAACTTATAATCATAATCTC+AGG - chr4_2:54282650-54282669 Msa0607480:CDS 25.0%
! TTTATCATCATTACTTCTAC+AGG + chr4_2:54282856-54282875 None:intergenic 25.0%
! TAGGCAAGTTCATAAAATAT+AGG + chr4_2:54282893-54282912 None:intergenic 25.0%
!!! CACTTTTGGTGTTTAAATTT+TGG - chr4_2:54282932-54282951 Msa0607480:intron 25.0%
!!! CAGTTTAGTTTTACCATATT+TGG - chr4_2:54283177-54283196 Msa0607480:intron 25.0%
!!! TTAGTTTTACCATATTTGGT+CGG - chr4_2:54283181-54283200 Msa0607480:intron 25.0%
! ATCATATCTTCATAAGCATA+AGG + chr4_2:54283509-54283528 None:intergenic 25.0%
! TTATGAAGATATGATGAAGA+TGG - chr4_2:54283514-54283533 Msa0607480:intron 25.0%
! TATGAAGATATGATGAAGAT+GGG - chr4_2:54283515-54283534 Msa0607480:intron 25.0%
!! AGTGTTGAAACTTATAATCT+AGG + chr4_2:54283602-54283621 None:intergenic 25.0%
! TATAAGTTTCAACACTCAAT+CGG - chr4_2:54283606-54283625 Msa0607480:intron 25.0%
!! GTTGTATTTTATTAGGTGAT+TGG - chr4_2:54283728-54283747 Msa0607480:CDS 25.0%
!!! TTCTAAAACTTCACTATTTC+AGG + chr4_2:54283783-54283802 None:intergenic 25.0%
ATTGCAATTGGCAATGTAAT+TGG - chr4_2:54280692-54280711 Msa0607480:intron 30.0%
TTGCAATTGGCAATGTAATT+GGG - chr4_2:54280693-54280712 Msa0607480:intron 30.0%
TGAACTATTTCACACTCAAA+TGG - chr4_2:54280855-54280874 Msa0607480:three_prime_UTR 30.0%
!!! AATTCACTCTTTTTTGCTTC+TGG - chr4_2:54281082-54281101 Msa0607480:three_prime_UTR 30.0%
!!! ATTCACTCTTTTTTGCTTCT+GGG - chr4_2:54281083-54281102 Msa0607480:three_prime_UTR 30.0%
! CTTCTGGGTTCTTTTTATAT+TGG - chr4_2:54281170-54281189 Msa0607480:CDS 30.0%
! ATTTCATTCTTTTCTGCTTC+TGG - chr4_2:54281225-54281244 Msa0607480:intron 30.0%
! TTTCATTCTTTTCTGCTTCT+GGG - chr4_2:54281226-54281245 Msa0607480:intron 30.0%
ATGCAAATTTGAGCTAAAGT+TGG + chr4_2:54281277-54281296 None:intergenic 30.0%
!!! TGGCATTTATTTTAATGGGT+TGG - chr4_2:54281304-54281323 Msa0607480:intron 30.0%
ATGCATGTATAGAATCTCAA+CGG - chr4_2:54281522-54281541 Msa0607480:intron 30.0%
TTAAATGCTTGCAATCATCT+TGG - chr4_2:54281601-54281620 Msa0607480:intron 30.0%
! ACTGCTCTAAATGTAAACAT+AGG + chr4_2:54281786-54281805 None:intergenic 30.0%
! ATAGATGAAGCACTCATAAA+TGG - chr4_2:54281974-54281993 Msa0607480:CDS 30.0%
! TAGATGAAGCACTCATAAAT+GGG - chr4_2:54281975-54281994 Msa0607480:CDS 30.0%
!! ATAATCATTTTCTAATGGGC+TGG - chr4_2:54282278-54282297 Msa0607480:intron 30.0%
ACCATTAACAACATGGATAA+TGG - chr4_2:54282385-54282404 Msa0607480:intron 30.0%
ACCATTATCCATGTTGTTAA+TGG + chr4_2:54282389-54282408 None:intergenic 30.0%
AAGGTTAACTCTTAAAACAC+AGG + chr4_2:54282473-54282492 None:intergenic 30.0%
! AAAATAACGAAAGAAGGCAT+GGG + chr4_2:54282524-54282543 None:intergenic 30.0%
AAAAATAACGAAAGAAGGCA+TGG + chr4_2:54282525-54282544 None:intergenic 30.0%
! TTTTCAACAAGTCAGACAAT+AGG + chr4_2:54282912-54282931 None:intergenic 30.0%
!!! TGACTTGTTGAAAACACTTT+TGG - chr4_2:54282918-54282937 Msa0607480:intron 30.0%
TTGACTATATTGTGAGCTAT+TGG - chr4_2:54282966-54282985 Msa0607480:intron 30.0%
! CAATCAAAAGTTAGAAGCAT+AGG - chr4_2:54282996-54283015 Msa0607480:intron 30.0%
TCTGAGAATTTATATTGACG+AGG - chr4_2:54283085-54283104 Msa0607480:intron 30.0%
! TTTAGAATTCCTGCTTAACA+CGG - chr4_2:54283796-54283815 Msa0607480:CDS 30.0%
CTTAACACGGAAATTTCAAT+AGG - chr4_2:54283809-54283828 Msa0607480:CDS 30.0%
TGAAATTGCAAAAAAGGGTT+TGG - chr4_2:54283941-54283960 Msa0607480:five_prime_UTR 30.0%
ATTGGCAATGTAATTGGGTA+AGG - chr4_2:54280698-54280717 Msa0607480:intron 35.0%
!! ATCTCTAAGATAGAGCTTGT+GGG + chr4_2:54280729-54280748 None:intergenic 35.0%
AAGAAGAACTGAGAAGGAAA+GGG + chr4_2:54280939-54280958 None:intergenic 35.0%
TACGACATTTGGAAAAAGGT+GGG + chr4_2:54280984-54281003 None:intergenic 35.0%
ATACGACATTTGGAAAAAGG+TGG + chr4_2:54280985-54281004 None:intergenic 35.0%
CTGATACGACATTTGGAAAA+AGG + chr4_2:54280988-54281007 None:intergenic 35.0%
TTAGAATTGGTACTAGAGGA+AGG - chr4_2:54281058-54281077 Msa0607480:three_prime_UTR 35.0%
! AGTTGTTTCACATGTTGACT+TGG - chr4_2:54281359-54281378 Msa0607480:CDS 35.0%
! GATAGTGTGTTGTTGACATT+TGG - chr4_2:54281384-54281403 Msa0607480:CDS 35.0%
GTTTGATGTTTCGTCATTCA+AGG - chr4_2:54281456-54281475 Msa0607480:CDS 35.0%
! TTGCGACAGTATTTTATCAC+CGG + chr4_2:54281912-54281931 None:intergenic 35.0%
! AGATGAAGCACTCATAAATG+GGG - chr4_2:54281976-54281995 Msa0607480:CDS 35.0%
! CATGGCAAAATTGTTTTCTC+GGG + chr4_2:54282049-54282068 None:intergenic 35.0%
! GCATGGCAAAATTGTTTTCT+CGG + chr4_2:54282050-54282069 None:intergenic 35.0%
TCTTGTCACCATTAACAACA+TGG - chr4_2:54282378-54282397 Msa0607480:intron 35.0%
AAGGCTTAGAAAACTAAGTG+AGG - chr4_2:54282704-54282723 Msa0607480:CDS 35.0%
AGGCTTAGAAAACTAAGTGA+GGG - chr4_2:54282705-54282724 Msa0607480:CDS 35.0%
AGTTGTCAAAGCTACCTTAT+TGG - chr4_2:54282728-54282747 Msa0607480:CDS 35.0%
ATTCTCAGATATTGGGGAAA+GGG + chr4_2:54283074-54283093 None:intergenic 35.0%
AATTCTCAGATATTGGGGAA+AGG + chr4_2:54283075-54283094 None:intergenic 35.0%
TATTTCAATTCAAGGAGCGA+AGG - chr4_2:54283125-54283144 Msa0607480:intron 35.0%
GATGGAAATTGCTTGTTTAG+AGG - chr4_2:54283343-54283362 Msa0607480:intron 35.0%
ATAAGCATAAGGACCAATTC+TGG + chr4_2:54283498-54283517 None:intergenic 35.0%
AGATATGATGAAGATGGGTA+AGG - chr4_2:54283520-54283539 Msa0607480:intron 35.0%
ACAACAATTTGATCCTGATG+AGG + chr4_2:54283713-54283732 None:intergenic 35.0%
TTGAAATTTCCGTGTTAAGC+AGG + chr4_2:54283808-54283827 None:intergenic 35.0%
AACACGGAAATTTCAATAGG+TGG - chr4_2:54283812-54283831 Msa0607480:CDS 35.0%
GAAATTTCAATAGGTGGTTC+TGG - chr4_2:54283818-54283837 Msa0607480:CDS 35.0%
!! TTTTTCCTTTTGATTCCCTC+AGG + chr4_2:54283989-54284008 None:intergenic 35.0%
GCAATGTAATTGGGTAAGGT+AGG - chr4_2:54280702-54280721 Msa0607480:intron 40.0%
!! GATCTCTAAGATAGAGCTTG+TGG + chr4_2:54280730-54280749 None:intergenic 40.0%
GAATGCAGAAGAGGAAGAAA+GGG + chr4_2:54280887-54280906 None:intergenic 40.0%
AGAATGCAGAAGAGGAAGAA+AGG + chr4_2:54280888-54280907 None:intergenic 40.0%
AGAAGAACTGAGAAGGAAAG+GGG + chr4_2:54280938-54280957 None:intergenic 40.0%
CAAGAAGAACTGAGAAGGAA+AGG + chr4_2:54280940-54280959 None:intergenic 40.0%
!! ATGGGTTGGTGCTATATGTT+AGG - chr4_2:54281318-54281337 Msa0607480:intron 40.0%
!! TGTTTCACATGTTGACTTGG+TGG - chr4_2:54281362-54281381 Msa0607480:CDS 40.0%
ATACAGAGTTAGCCGAAGAA+GGG - chr4_2:54281858-54281877 Msa0607480:CDS 40.0%
AATCTGAATAGCCCCTTCTT+CGG + chr4_2:54281873-54281892 None:intergenic 40.0%
! GTTTTCTCGGGCAAATAAGT+AGG + chr4_2:54282037-54282056 None:intergenic 40.0%
TGATTTCCGTCTAAGTGATG+CGG + chr4_2:54282161-54282180 None:intergenic 40.0%
TTAGAGATGGATATCTGTGG+AGG + chr4_2:54282189-54282208 None:intergenic 40.0%
CACTTAGAGATGGATATCTG+TGG + chr4_2:54282192-54282211 None:intergenic 40.0%
ATCCATCTCTAAGTGTAAGC+TGG - chr4_2:54282197-54282216 Msa0607480:intron 40.0%
GTCATTGCATGGTTCGAATA+AGG + chr4_2:54283050-54283069 None:intergenic 40.0%
TTCTCAGATATTGGGGAAAG+GGG + chr4_2:54283073-54283092 None:intergenic 40.0%
AGAAATCAGCCGACCAAATA+TGG + chr4_2:54283193-54283212 None:intergenic 40.0%
AAGAACCATCCAAAGTCGTA+AGG + chr4_2:54283285-54283304 None:intergenic 40.0%
TGCAAAGATGTTCATACCAC+GGG + chr4_2:54283392-54283411 None:intergenic 40.0%
CTGCAAAGATGTTCATACCA+CGG + chr4_2:54283393-54283412 None:intergenic 40.0%
! AGTTTCAAGCACTGCACAAA+CGG + chr4_2:54283474-54283493 None:intergenic 40.0%
GTGCTTGAAACTTCCAGAAT+TGG - chr4_2:54283482-54283501 Msa0607480:intron 40.0%
CTCAATCGGTAACACAGATA+TGG - chr4_2:54283620-54283639 Msa0607480:intron 40.0%
ATCGGTAACACAGATATGGT+AGG - chr4_2:54283624-54283643 Msa0607480:intron 40.0%
TTTCAACTGAACTCCTCATC+AGG - chr4_2:54283697-54283716 Msa0607480:CDS 40.0%
! TCAATTTGAAGCTGATCCTG+AGG - chr4_2:54283970-54283989 Msa0607480:five_prime_UTR 40.0%
! CAATTTGAAGCTGATCCTGA+GGG - chr4_2:54283971-54283990 Msa0607480:five_prime_UTR 40.0%
AGGAAGAGAGAATGCAGAAG+AGG + chr4_2:54280896-54280915 None:intergenic 45.0%
! GAAGGATTGGAAGGTGTAGA+AGG + chr4_2:54280916-54280935 None:intergenic 45.0%
AGGGACAAGAAGAACTGAGA+AGG + chr4_2:54280945-54280964 None:intergenic 45.0%
!! GGGATTTTGAAAGACGCGAA+GGG + chr4_2:54280964-54280983 None:intergenic 45.0%
!! TGGGATTTTGAAAGACGCGA+AGG + chr4_2:54280965-54280984 None:intergenic 45.0%
! GGAAGCTCTGATACGACATT+TGG + chr4_2:54280995-54281014 None:intergenic 45.0%
! TTAGAGCAGTCCACTAGCTT+TGG - chr4_2:54281796-54281815 Msa0607480:intron 45.0%
CATACAGAGTTAGCCGAAGA+AGG - chr4_2:54281857-54281876 Msa0607480:CDS 45.0%
TACAGAGTTAGCCGAAGAAG+GGG - chr4_2:54281859-54281878 Msa0607480:CDS 45.0%
TCATTGAGTGCAGCTTCACT+AGG - chr4_2:54282106-54282125 Msa0607480:intron 45.0%
AGCTTCACTAGGTGATCTAC+CGG - chr4_2:54282117-54282136 Msa0607480:intron 45.0%
GTACCAATAACACTTCCAGC+CGG + chr4_2:54282139-54282158 None:intergenic 45.0%
TTGGTACCGCATCACTTAGA+CGG - chr4_2:54282152-54282171 Msa0607480:intron 45.0%
CACCAGCTTACACTTAGAGA+TGG + chr4_2:54282202-54282221 None:intergenic 45.0%
ATATGGCAGACACTGAACAG+TGG + chr4_2:54282240-54282259 None:intergenic 45.0%
CTGTTCAGTGTCTGCCATAT+TGG - chr4_2:54282240-54282259 Msa0607480:intron 45.0%
AGAGTCATACTCGAGGATAC+TGG - chr4_2:54282441-54282460 Msa0607480:intron 45.0%
GAGTCATACTCGAGGATACT+GGG - chr4_2:54282442-54282461 Msa0607480:intron 45.0%
CAGGTGCAAGATAATTTCCG+TGG - chr4_2:54282669-54282688 Msa0607480:CDS 45.0%
TCCGTGGAAATGTGCAAACA+AGG - chr4_2:54282685-54282704 Msa0607480:CDS 45.0%
!! GCCTTGTTTGCACATTTCCA+CGG + chr4_2:54282689-54282708 None:intergenic 45.0%
GGCTATTCCAATTGCACCTT+GGG + chr4_2:54282835-54282854 None:intergenic 45.0%
AGGCTATTCCAATTGCACCT+TGG + chr4_2:54282836-54282855 None:intergenic 45.0%
TCTCAGATATTGGGGAAAGG+GGG + chr4_2:54283072-54283091 None:intergenic 45.0%
AAGAGCCTTCCTTACGACTT+TGG - chr4_2:54283273-54283292 Msa0607480:intron 45.0%
ACCATCCAAAGTCGTAAGGA+AGG + chr4_2:54283281-54283300 None:intergenic 45.0%
TATGCTAGCAGAGACAAGGA+TGG - chr4_2:54283325-54283344 Msa0607480:intron 45.0%
! CACTGCACAAACGGAGTTTT+GGG + chr4_2:54283465-54283484 None:intergenic 45.0%
GATGAAGATGGGTAAGGATG+CGG - chr4_2:54283526-54283545 Msa0607480:intron 45.0%
ATGAAGATGGGTAAGGATGC+GGG - chr4_2:54283527-54283546 Msa0607480:intron 45.0%
!! CAATAGGTGGTTCTGGATTC+TGG - chr4_2:54283825-54283844 Msa0607480:CDS 45.0%
CTGATCCTGAGGGAATCAAA+AGG - chr4_2:54283981-54284000 Msa0607480:five_prime_UTR 45.0%
AGGAAAGGGGAAGGATTGGA+AGG + chr4_2:54280925-54280944 None:intergenic 50.0%
GAGAAGGAAAGGGGAAGGAT+TGG + chr4_2:54280929-54280948 None:intergenic 50.0%
GAACTGAGAAGGAAAGGGGA+AGG + chr4_2:54280934-54280953 None:intergenic 50.0%
CGTCTGTTGCTCAACAGCAA+CGG + chr4_2:54281016-54281035 None:intergenic 50.0%
AACCGCTTGCAGACATAGGT+GGG - chr4_2:54281930-54281949 Msa0607480:CDS 50.0%
TTCCCACCTATGTCTGCAAG+CGG + chr4_2:54281935-54281954 None:intergenic 50.0%
CTTGCAGACATAGGTGGGAA+GGG - chr4_2:54281935-54281954 Msa0607480:CDS 50.0%
!! CTACCGGCTGGAAGTGTTAT+TGG - chr4_2:54282133-54282152 Msa0607480:intron 50.0%
ACGCTTGAGAGTCATACTCG+AGG - chr4_2:54282434-54282453 Msa0607480:intron 50.0%
!! GCTACCTTATTGGCTCTAGC+TGG - chr4_2:54282738-54282757 Msa0607480:CDS 50.0%
CAGTCCAGCTAGAGCCAATA+AGG + chr4_2:54282745-54282764 None:intergenic 50.0%
! TTTGGTCGGCTGATTTCTGC+AGG - chr4_2:54283195-54283214 Msa0607480:intron 50.0%
CGTAAGGAAGGCTCTTTCAC+AGG + chr4_2:54283269-54283288 None:intergenic 50.0%
GCCTTCCTTACGACTTTGGA+TGG - chr4_2:54283277-54283296 Msa0607480:intron 50.0%
CATACCCTGCAATAGGCGTT+CGG + chr4_2:54283309-54283328 None:intergenic 50.0%
CTGCTAGCATACCCTGCAAT+AGG + chr4_2:54283316-54283335 None:intergenic 50.0%
AGGGTATGCTAGCAGAGACA+AGG - chr4_2:54283321-54283340 Msa0607480:intron 50.0%
TTCATACCACGGGTTCCATC+GGG + chr4_2:54283382-54283401 None:intergenic 50.0%
GTTCATACCACGGGTTCCAT+CGG + chr4_2:54283383-54283402 None:intergenic 50.0%
! GCACTGCACAAACGGAGTTT+TGG + chr4_2:54283466-54283485 None:intergenic 50.0%
!! CAGTCCACTAGCTTTGGCTC+AGG - chr4_2:54281802-54281821 Msa0607480:intron 55.0%
TGTGCCTGAGCCAAAGCTAG+TGG + chr4_2:54281809-54281828 None:intergenic 55.0%
TCGCAACCGCTTGCAGACAT+AGG - chr4_2:54281926-54281945 Msa0607480:CDS 55.0%
CAACCGCTTGCAGACATAGG+TGG - chr4_2:54281929-54281948 Msa0607480:CDS 55.0%
GCTTGCAGACATAGGTGGGA+AGG - chr4_2:54281934-54281953 Msa0607480:CDS 55.0%
TCCTCTCGTGGAAGGTTGCA+TGG + chr4_2:54282067-54282086 None:intergenic 55.0%
CTCTGACATCCTCTCGTGGA+AGG + chr4_2:54282075-54282094 None:intergenic 55.0%
GCATCTCTGACATCCTCTCG+TGG + chr4_2:54282079-54282098 None:intergenic 55.0%
TCACTAGGTGATCTACCGGC+TGG - chr4_2:54282121-54282140 Msa0607480:intron 55.0%
ATGCTTCCAGCTGTTGCCCA+AGG - chr4_2:54282816-54282835 Msa0607480:CDS 55.0%
ATTGCACCTTGGGCAACAGC+TGG + chr4_2:54282825-54282844 None:intergenic 55.0%
GCTGTTGCCCAAGGTGCAAT+TGG - chr4_2:54282825-54282844 Msa0607480:CDS 55.0%
TCTTGCCGAACGCCTATTGC+AGG - chr4_2:54283301-54283320 Msa0607480:intron 55.0%
CTTGCCGAACGCCTATTGCA+GGG - chr4_2:54283302-54283321 Msa0607480:intron 55.0%
!! GGATTAGTTGCTTCCCCCGA+TGG - chr4_2:54283364-54283383 Msa0607480:intron 55.0%
TCATACCACGGGTTCCATCG+GGG + chr4_2:54283381-54283400 None:intergenic 55.0%
GAGGAGCTTCTTTCTCGAGC+TGG - chr4_2:54283551-54283570 Msa0607480:intron 55.0%
CTTCTTTCTCGAGCTGGACC+TGG - chr4_2:54283557-54283576 Msa0607480:intron 55.0%
GCCATGCAACCTTCCACGAG+AGG - chr4_2:54282063-54282082 Msa0607480:intron 60.0%
GGGGAAAGGGGGTCATTGCA+TGG + chr4_2:54283061-54283080 None:intergenic 60.0%
CATACCACGGGTTCCATCGG+GGG + chr4_2:54283380-54283399 None:intergenic 60.0%
GATGGGTAAGGATGCGGGTG+AGG - chr4_2:54283532-54283551 Msa0607480:intron 60.0%
GCTTCCCCCGATGGAACCCG+TGG - chr4_2:54283373-54283392 Msa0607480:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54280692 54284033 54280692 ID=Msa0607480;Name=Msa0607480
chr4_2 mRNA 54280692 54284033 54280692 ID=Msa0607480-mRNA-1;Parent=Msa0607480;Name=Msa0607480-mRNA-1;_AED=0.29;_eAED=0.29;_QI=182|1|1|1|0.8|0.66|6|395|369
chr4_2 exon 54280692 54280701 54280692 ID=Msa0607480-mRNA-1:exon:13575;Parent=Msa0607480-mRNA-1
chr4_2 exon 54280745 54281242 54280745 ID=Msa0607480-mRNA-1:exon:13574;Parent=Msa0607480-mRNA-1
chr4_2 exon 54281331 54281508 54281331 ID=Msa0607480-mRNA-1:exon:13573;Parent=Msa0607480-mRNA-1
chr4_2 exon 54281847 54282053 54281847 ID=Msa0607480-mRNA-1:exon:13572;Parent=Msa0607480-mRNA-1
chr4_2 exon 54282515 54282920 54282515 ID=Msa0607480-mRNA-1:exon:13571;Parent=Msa0607480-mRNA-1
chr4_2 exon 54283646 54284033 54283646 ID=Msa0607480-mRNA-1:exon:13570;Parent=Msa0607480-mRNA-1
chr4_2 five_prime_UTR 54283852 54284033 54283852 ID=Msa0607480-mRNA-1:five_prime_utr;Parent=Msa0607480-mRNA-1
chr4_2 CDS 54283646 54283851 54283646 ID=Msa0607480-mRNA-1:cds;Parent=Msa0607480-mRNA-1
chr4_2 CDS 54282515 54282920 54282515 ID=Msa0607480-mRNA-1:cds;Parent=Msa0607480-mRNA-1
chr4_2 CDS 54281847 54282053 54281847 ID=Msa0607480-mRNA-1:cds;Parent=Msa0607480-mRNA-1
chr4_2 CDS 54281331 54281508 54281331 ID=Msa0607480-mRNA-1:cds;Parent=Msa0607480-mRNA-1
chr4_2 CDS 54281130 54281242 54281130 ID=Msa0607480-mRNA-1:cds;Parent=Msa0607480-mRNA-1
chr4_2 three_prime_UTR 54280745 54281129 54280745 ID=Msa0607480-mRNA-1:three_prime_utr;Parent=Msa0607480-mRNA-1
chr4_2 three_prime_UTR 54280692 54280701 54280692 ID=Msa0607480-mRNA-1:three_prime_utr;Parent=Msa0607480-mRNA-1
Gene Sequence

>Msa0607480

ATGGAGATGACCCTTTCTTCCTCTTCTGCATTCTCTCTTCCTTCTACACCTTCCAATCCTTCCCCTTTCCTTCTCAGTTCTTCTTGTCCCTTCGCGTCTTTCAAAATCCCACCTTTTTCCAAATGTCGTATCAGAGCTTCCGTTGCTGTTGAGCAACAGACGCAACAAACCAAAACTGCGATTATTAGAATTGGTACTAGAGGAAGTCCACTAGCTTTGGCTCAGGCACACGAGACTAGAGACAAACTCATAGCATCGCATACAGAGTTAGCCGAAGAAGGGGCTATTCAGATTGTAATAATAAAAACAACCGGTGATAAAATACTGTCGCAACCGCTTGCAGACATAGGTGGGAAGGGCTTGTTTACTAAAGAAATAGATGAAGCACTCATAAATGGGGACATTGACATTGCAGTTCACTCAATGAAAGATGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCATGCAACCTTCCACGAGAGGATGTCAGAGATGCGTTTATATCATTGAGTGCAGCTTCACTAGGTGATCTACCGGCTGGAAGTGTTATTGGTACCGCATCACTTAGACGGAAATCACAAATCCTCCACAGATATCCATCTCTAAGTGTGCAAGATAATTTCCGTGGAAATGTGCAAACAAGGCTTAGAAAACTAAGTGAGGGAGTTGTCAAAGCTACCTTATTGGCTCTAGCTGGACTGAAACGATTAAATATGACAGAAAATGTTACTTCGACACTTTCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGAAGTAATGATGATAAAATGGCAGAATATCTTGCTTTGCTGAATCATGAAGAAACAAGATTAGCAATTTCCTGTGAAAGAGCCTTCCTTACGACTTTGGATGGTTCTTGCCGAACGCCTATTGCAGGGTATGCTAGCAGAGACAAGGATGGAAATTGCTTGTTTAGAGGATTAGTTGCTTCCCCCGATGGAACCCGTGTGCTTGAAACTTCCAGAATTGGTCCTTATGCTTATGAAGATATGATGAAGATGGGTAAGGATGCGGGTGAGGAGCTTCTTTCTCGAGCTGGACCTGGTTTTTTCAATAGTTAA

Protein sequence

>Msa0607480

MEMTLSSSSAFSLPSTPSNPSPFLLSSSCPFASFKIPPFSKCRIRASVAVEQQTQQTKTAIIRIGTRGSPLALAQAHETRDKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLGDLPAGSVIGTASLRRKSQILHRYPSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSNDDKMAEYLALLNHEETRLAISCERAFLTTLDGSCRTPIAGYASRDKDGNCLFRGLVASPDGTRVLETSRIGPYAYEDMMKMGKDAGEELLSRAGPGFFNS*