Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72285.t1 | XP_003608807.1 | 100 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 6.00E-78 | 300.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72285.t1 | P59224 | 92.1 | 151 | 12 | 0 | 1 | 151 | 1 | 151 | 1.2e-74 | 280.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72285.t1 | G7JLB5 | 100.0 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 4.3e-78 | 300.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene72285 | -0.847285 | 1.27E-59 | -1.69E-46 |
| MS.gene049140 | MS.gene72285 | 0.825785 | 3.88E-54 | -1.69E-46 |
| MS.gene049255 | MS.gene72285 | 0.830483 | 2.86E-55 | -1.69E-46 |
| MS.gene049411 | MS.gene72285 | 0.825385 | 4.82E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene72285 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene72285 | 0.863215 | 2.92E-64 | -1.69E-46 |
| MS.gene050320 | MS.gene72285 | 0.873193 | 1.78E-67 | -1.69E-46 |
| MS.gene050437 | MS.gene72285 | 0.826657 | 2.41E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene72285 | 0.894518 | 2.29E-75 | -1.69E-46 |
| MS.gene050838 | MS.gene72285 | 0.895405 | 9.89E-76 | -1.69E-46 |
| MS.gene050916 | MS.gene72285 | 0.811199 | 7.89E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene72285 | 0.873571 | 1.33E-67 | -1.69E-46 |
| MS.gene051003 | MS.gene72285 | 0.872744 | 2.51E-67 | -1.69E-46 |
| MS.gene051063 | MS.gene72285 | 0.821605 | 3.69E-53 | -1.69E-46 |
| MS.gene051233 | MS.gene72285 | 0.818103 | 2.33E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene72285 | 0.868212 | 7.72E-66 | -1.69E-46 |
| MS.gene051328 | MS.gene72285 | 0.809278 | 2.05E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene72285 | 0.843233 | 1.59E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene72285 | 0.815962 | 7.07E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene72285 | 0.82498 | 6.02E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene72285 | 0.822071 | 2.88E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene72285 | 0.804249 | 2.36E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene72285 | 0.889879 | 1.63E-73 | -1.69E-46 |
| MS.gene051748 | MS.gene72285 | 0.884424 | 1.94E-71 | -1.69E-46 |
| MS.gene051756 | MS.gene72285 | 0.829187 | 5.92E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene72285 | 0.868466 | 6.39E-66 | -1.69E-46 |
| MS.gene051885 | MS.gene72285 | 0.807792 | 4.25E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene72285 | 0.832404 | 9.64E-56 | -1.69E-46 |
| MS.gene051902 | MS.gene72285 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene72285 | 0.915563 | 5.07E-85 | -1.69E-46 |
| MS.gene051975 | MS.gene72285 | 0.822336 | 2.50E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene72285 | 0.809504 | 1.83E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene72285 | 0.828483 | 8.77E-55 | -1.69E-46 |
| MS.gene052818 | MS.gene72285 | -0.819904 | 9.09E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene72285 | 0.899165 | 2.59E-77 | -1.69E-46 |
| MS.gene053058 | MS.gene72285 | 0.850185 | 2.00E-60 | -1.69E-46 |
| MS.gene053109 | MS.gene72285 | 0.877619 | 5.44E-69 | -1.69E-46 |
| MS.gene053564 | MS.gene72285 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene72285 | 0.801852 | 7.41E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene72285 | 0.877316 | 6.93E-69 | -1.69E-46 |
| MS.gene054403 | MS.gene72285 | 0.89632 | 4.13E-76 | -1.69E-46 |
| MS.gene05469 | MS.gene72285 | 0.818797 | 1.63E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene72285 | 0.857996 | 1.12E-62 | -1.69E-46 |
| MS.gene055162 | MS.gene72285 | 0.8211 | 4.83E-53 | -1.69E-46 |
| MS.gene055424 | MS.gene72285 | 0.826758 | 2.28E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene72285 | 0.845291 | 4.45E-59 | -1.69E-46 |
| MS.gene056043 | MS.gene72285 | -0.801673 | 8.06E-49 | -1.69E-46 |
| MS.gene056075 | MS.gene72285 | 0.900562 | 6.47E-78 | -1.69E-46 |
| MS.gene056091 | MS.gene72285 | 0.80441 | 2.19E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene72285 | 0.801326 | 9.49E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene72285 | 0.87871 | 2.25E-69 | -1.69E-46 |
| MS.gene056986 | MS.gene72285 | 0.83307 | 6.59E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene72285 | 0.821451 | 4.01E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene72285 | 0.894466 | 2.40E-75 | -1.69E-46 |
| MS.gene057206 | MS.gene72285 | 0.819728 | 9.97E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene72285 | 0.850552 | 1.58E-60 | -1.69E-46 |
| MS.gene057694 | MS.gene72285 | 0.801679 | 8.04E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene72285 | 0.880026 | 7.70E-70 | -1.69E-46 |
| MS.gene05781 | MS.gene72285 | 0.852054 | 5.94E-61 | -1.69E-46 |
| MS.gene057999 | MS.gene72285 | 0.834661 | 2.63E-56 | -1.69E-46 |
| MS.gene058055 | MS.gene72285 | 0.813512 | 2.47E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene72285 | 0.814521 | 1.48E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene72285 | 0.841215 | 5.44E-58 | -1.69E-46 |
| MS.gene058245 | MS.gene72285 | 0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene72285 | 0.806061 | 9.87E-50 | -1.69E-46 |
| MS.gene058364 | MS.gene72285 | 0.828416 | 9.10E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene72285 | 0.820282 | 7.45E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene72285 | 0.829962 | 3.84E-55 | -1.69E-46 |
| MS.gene059171 | MS.gene72285 | 0.803051 | 4.19E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene72285 | 0.842617 | 2.32E-58 | -1.69E-46 |
| MS.gene059726 | MS.gene72285 | 0.815469 | 9.10E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene72285 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene72285 | 0.901978 | 1.55E-78 | -1.69E-46 |
| MS.gene06011 | MS.gene72285 | 0.864642 | 1.05E-64 | -1.69E-46 |
| MS.gene060429 | MS.gene72285 | 0.82517 | 5.42E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene72285 | 0.855084 | 8.00E-62 | -1.69E-46 |
| MS.gene060830 | MS.gene72285 | 0.827679 | 1.37E-54 | -1.69E-46 |
| MS.gene060917 | MS.gene72285 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene061145 | MS.gene72285 | 0.833405 | 5.43E-56 | -1.69E-46 |
| MS.gene06118 | MS.gene72285 | 0.838835 | 2.27E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72285.t1 | MTR_4g102170 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 7.05e-109 | 306 |
| MS.gene72285.t1 | MTR_4g024550 | 94.040 | 151 | 9 | 0 | 1 | 151 | 1 | 151 | 3.21e-102 | 289 |
| MS.gene72285.t1 | MTR_5g011910 | 92.715 | 151 | 11 | 0 | 1 | 151 | 1 | 151 | 1.51e-100 | 285 |
| MS.gene72285.t1 | MTR_4g024265 | 92.035 | 113 | 9 | 0 | 1 | 113 | 1 | 113 | 9.29e-70 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72285.t1 | AT4G00100 | 92.053 | 151 | 12 | 0 | 1 | 151 | 1 | 151 | 7.67e-101 | 286 |
| MS.gene72285.t1 | AT3G60770 | 92.053 | 151 | 12 | 0 | 1 | 151 | 1 | 151 | 1.91e-100 | 285 |
Find 43 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATCGGTGTTATTCTT+AGG | 0.199752 | 8.2:-21371917 | MS.gene72285:CDS |
| CCAGACTGGTGGGAGCTTCT+TGG | 0.208703 | 8.2:+21371071 | None:intergenic |
| ACTTGGAGTCCTTATCCTTT+CGG | 0.353333 | 8.2:+21371151 | None:intergenic |
| TCAAGAAGGCAGTTTCAATT+AGG | 0.353735 | 8.2:-21371191 | MS.gene72285:CDS |
| TACAGATCCTCAGGAATTTC+CGG | 0.365553 | 8.2:+21371222 | None:intergenic |
| CACAAGAATCAACCTGAACT+TGG | 0.390376 | 8.2:+21371134 | None:intergenic |
| TCAGATCGGTGTTATTCTTA+GGG | 0.403625 | 8.2:-21371916 | MS.gene72285:CDS |
| AGTTTCAATTAGGAAGCATT+TGG | 0.418745 | 8.2:-21371181 | MS.gene72285:CDS |
| CCAAGAAGCTCCCACCAGTC+TGG | 0.424976 | 8.2:-21371071 | MS.gene72285:CDS |
| AAACTGCCTTCTTGATCAAA+TGG | 0.434219 | 8.2:+21371199 | None:intergenic |
| TATTTGCAAGTTTGCAAAGA+AGG | 0.458801 | 8.2:-21371952 | MS.gene72285:CDS |
| GGAGAGGAACCGAAAGGATA+AGG | 0.464398 | 8.2:-21371160 | MS.gene72285:CDS |
| AGGATAAGGACTCCAAGTTC+AGG | 0.467196 | 8.2:-21371146 | MS.gene72285:CDS |
| ATCAAATGGTACAGATCCTC+AGG | 0.478375 | 8.2:+21371213 | None:intergenic |
| TCACTGGCAGCAAAATCCTT+AGG | 0.488968 | 8.2:-21371863 | MS.gene72285:CDS |
| CAAGTTCAGGTTGATTCTTG+TGG | 0.500791 | 8.2:-21371133 | MS.gene72285:CDS |
| GTTATTCTTAGGGATTCTCA+TGG | 0.504564 | 8.2:-21371906 | MS.gene72285:CDS |
| GCTCAAGTTAAGTTTATCAC+TGG | 0.507100 | 8.2:-21371879 | MS.gene72285:CDS |
| CATGAGCCTTGAGGATCCTA+AGG | 0.520024 | 8.2:+21371847 | None:intergenic |
| ATCAACAACTGCCAGCACTT+TGG | 0.526669 | 8.2:-21370384 | MS.gene72285:CDS |
| CCTCTGCTTTACCATACAAA+AGG | 0.527826 | 8.2:-21372108 | MS.gene72285:CDS |
| ATTTGCAAGTTTGCAAAGAA+GGG | 0.531484 | 8.2:-21371951 | MS.gene72285:CDS |
| GTAGAGGTCTTGAGCCATCC+TGG | 0.536330 | 8.2:+21372079 | None:intergenic |
| AGAATAACACCGATCTGAGA+TGG | 0.551609 | 8.2:+21371921 | None:intergenic |
| CTTAGGATCCTCAAGGCTCA+TGG | 0.558577 | 8.2:-21371846 | MS.gene72285:intron |
| TCTCTAAGCAACCAAAGTGC+TGG | 0.564231 | 8.2:+21370373 | None:intergenic |
| TCTGTACCATTTGATCAAGA+AGG | 0.592710 | 8.2:-21371205 | MS.gene72285:CDS |
| ACTTACTACTTCCAGACTGG+TGG | 0.595917 | 8.2:+21371060 | None:intergenic |
| CCATACAAAAGGTCTGCACC+AGG | 0.597287 | 8.2:-21372097 | MS.gene72285:CDS |
| ATCATGGGGCGTATGCATAG+TGG | 0.599233 | 8.2:-21372265 | MS.gene72285:CDS |
| GGTACTTACTACTTCCAGAC+TGG | 0.601291 | 8.2:+21371057 | None:intergenic |
| CAATTAGGAAGCATTTGGAG+AGG | 0.603553 | 8.2:-21371176 | MS.gene72285:CDS |
| ATGGGGCGTATGCATAGTGG+CGG | 0.611401 | 8.2:-21372262 | MS.gene72285:CDS |
| TGGGGCGTATGCATAGTGGC+GGG | 0.622617 | 8.2:-21372261 | MS.gene72285:intron |
| AGAACATACCATGAGCCTTG+AGG | 0.623812 | 8.2:+21371838 | None:intergenic |
| TGTAATAGCGAGCAAGACGG+TGG | 0.633533 | 8.2:+21371100 | None:intergenic |
| ACAAAAGGTCTGCACCAGGA+TGG | 0.633754 | 8.2:-21372093 | MS.gene72285:CDS |
| CAAAATCCTTAGGATCCTCA+AGG | 0.639899 | 8.2:-21371853 | MS.gene72285:CDS |
| CTTACTACTTCCAGACTGGT+GGG | 0.659946 | 8.2:+21371061 | None:intergenic |
| GCATTTGGAGAGGAACCGAA+AGG | 0.672061 | 8.2:-21371166 | MS.gene72285:CDS |
| GGTTTGACTCCATCTCAGAT+CGG | 0.677869 | 8.2:-21371930 | MS.gene72285:CDS |
| TCTTGTAATAGCGAGCAAGA+CGG | 0.689009 | 8.2:+21371097 | None:intergenic |
| ACTTGCACCGGAAATTCCTG+AGG | 0.709274 | 8.2:-21371229 | MS.gene72285:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAAAAGAAAAAAAAA+TGG | + | chr8.2:21371683-21371702 | None:intergenic | 10.0% |
| !! | CTATATATCTAATAATATAA+TGG | - | chr8.2:21371977-21371996 | MS.gene72285:intron | 10.0% |
| !! | ATCAATATGAATAAACAAAT+AGG | + | chr8.2:21371606-21371625 | None:intergenic | 15.0% |
| !! | TCAATATGAATAAACAAATA+GGG | + | chr8.2:21371605-21371624 | None:intergenic | 15.0% |
| !! | TTTATATTGAAATTCTATTC+TGG | - | chr8.2:21372045-21372064 | MS.gene72285:intron | 15.0% |
| !!! | GATTGATTTATTTGAATTAT+AGG | - | chr8.2:21370653-21370672 | MS.gene72285:intron | 15.0% |
| !!! | TTTTGAATTGTTTCAATTTT+TGG | - | chr8.2:21370487-21370506 | MS.gene72285:intron | 15.0% |
| !! | ACATTTAATACAATAGCATA+GGG | + | chr8.2:21371784-21371803 | None:intergenic | 20.0% |
| !! | AGATTATTTGATCTATTTGA+AGG | - | chr8.2:21371747-21371766 | MS.gene72285:intron | 20.0% |
| !! | ATATTATAAGCACTTATGAT+AGG | - | chr8.2:21371301-21371320 | MS.gene72285:intron | 20.0% |
| !! | ATTGACAAAAAAATGATGAT+GGG | + | chr8.2:21370607-21370626 | None:intergenic | 20.0% |
| !! | TGATTTATTTGAATTATAGG+TGG | - | chr8.2:21370656-21370675 | MS.gene72285:intron | 20.0% |
| !! | TTATGTGAATTTAGATAAAC+AGG | - | chr8.2:21371196-21371215 | MS.gene72285:CDS | 20.0% |
| !!! | ATTTGTGTCATTATAGATTA+TGG | - | chr8.2:21370847-21370866 | MS.gene72285:intron | 20.0% |
| !!! | GTTTTCAGTTTATTTACATA+TGG | - | chr8.2:21370971-21370990 | MS.gene72285:intron | 20.0% |
| !!! | TAGTAAATGAGATTTCTTTT+GGG | - | chr8.2:21371374-21371393 | MS.gene72285:intron | 20.0% |
| !!! | TAGTACTAGAAAAATGATTT+TGG | - | chr8.2:21371655-21371674 | MS.gene72285:intron | 20.0% |
| !!! | TATATAGCTTTTGTTGAAAA+TGG | + | chr8.2:21371964-21371983 | None:intergenic | 20.0% |
| !!! | TTTGTGTCATTATAGATTAT+GGG | - | chr8.2:21370848-21370867 | MS.gene72285:intron | 20.0% |
| ! | AAAAATTACATCTTGTGTAG+AGG | + | chr8.2:21370578-21370597 | None:intergenic | 25.0% |
| ! | AAAATAGATGAAATTGCGAT+TGG | + | chr8.2:21370423-21370442 | None:intergenic | 25.0% |
| ! | AAATAGATGAAATTGCGATT+GGG | + | chr8.2:21370422-21370441 | None:intergenic | 25.0% |
| ! | ACTACCAAATAAGTACTTAT+GGG | + | chr8.2:21370888-21370907 | None:intergenic | 25.0% |
| ! | ATTTAATACAATAGCATAGG+GGG | + | chr8.2:21371782-21371801 | None:intergenic | 25.0% |
| ! | CACCAAAAAATACAAGATAT+TGG | + | chr8.2:21372186-21372205 | None:intergenic | 25.0% |
| ! | CATTGACAAAAAAATGATGA+TGG | + | chr8.2:21370608-21370627 | None:intergenic | 25.0% |
| ! | CATTTAATACAATAGCATAG+GGG | + | chr8.2:21371783-21371802 | None:intergenic | 25.0% |
| ! | CTAAATTAAAACTAGAGCAT+AGG | + | chr8.2:21371329-21371348 | None:intergenic | 25.0% |
| ! | CTTATGAAAACAGGTTATAT+TGG | - | chr8.2:21371224-21371243 | MS.gene72285:CDS | 25.0% |
| ! | GAATGTTACATTTGATACTA+TGG | - | chr8.2:21372017-21372036 | MS.gene72285:intron | 25.0% |
| ! | GACATTTAATACAATAGCAT+AGG | + | chr8.2:21371785-21371804 | None:intergenic | 25.0% |
| ! | GTTGAATAAAACAAAGTTTC+AGG | - | chr8.2:21371894-21371913 | MS.gene72285:CDS | 25.0% |
| ! | TACTACCAAATAAGTACTTA+TGG | + | chr8.2:21370889-21370908 | None:intergenic | 25.0% |
| ! | TTAAATGTCAACCTATTTGA+AGG | - | chr8.2:21371796-21371815 | MS.gene72285:intron | 25.0% |
| ! | TTATAGAAACAGTGTATTAC+AGG | - | chr8.2:21371173-21371192 | MS.gene72285:CDS | 25.0% |
| !! | AGTAAATGAGATTTCTTTTG+GGG | - | chr8.2:21371375-21371394 | MS.gene72285:intron | 25.0% |
| !! | CATTTTTCTACTCTTTCTAT+TGG | - | chr8.2:21371860-21371879 | MS.gene72285:CDS | 25.0% |
| !! | GTAGTAAATGAGATTTCTTT+TGG | - | chr8.2:21371373-21371392 | MS.gene72285:intron | 25.0% |
| !!! | TAGAATGTTATTGCTTTTGT+CGG | - | chr8.2:21372153-21372172 | MS.gene72285:intron | 25.0% |
| !!! | TCAATTTTTGGTTACAGTAA+GGG | - | chr8.2:21370499-21370518 | MS.gene72285:intron | 25.0% |
| !!! | TGCCAATATCTTGTATTTTT+TGG | - | chr8.2:21372181-21372200 | MS.gene72285:intron | 25.0% |
| !!! | TTCAATTTTTGGTTACAGTA+AGG | - | chr8.2:21370498-21370517 | MS.gene72285:intron | 25.0% |
| AAGCACTTGTAAAACTGATT+AGG | - | chr8.2:21371089-21371108 | MS.gene72285:CDS | 30.0% | |
| AAGCACTTGTGAAATTGATT+AGG | - | chr8.2:21371145-21371164 | MS.gene72285:CDS | 30.0% | |
| ACTCAACAAATCCTTCAAAT+AGG | + | chr8.2:21371810-21371829 | None:intergenic | 30.0% | |
| AGAGACAAGTCATTAATATC+AGG | + | chr8.2:21372224-21372243 | None:intergenic | 30.0% | |
| ATTTGCAAGTTTGCAAAGAA+GGG | - | chr8.2:21370687-21370706 | MS.gene72285:intron | 30.0% | |
| GACAAAAGCAATAACATTCT+AGG | + | chr8.2:21372154-21372173 | None:intergenic | 30.0% | |
| TAACCTAAAATTCTAGCATC+AGG | + | chr8.2:21372117-21372136 | None:intergenic | 30.0% | |
| TATTTGCAAGTTTGCAAAGA+AGG | - | chr8.2:21370686-21370705 | MS.gene72285:intron | 30.0% | |
| TCACTTCACACATAAAAACA+TGG | + | chr8.2:21371727-21371746 | None:intergenic | 30.0% | |
| TTGACCCATAAGTACTTATT+TGG | - | chr8.2:21370881-21370900 | MS.gene72285:intron | 30.0% | |
| TTGTTGAAAATGGATATCCA+CGG | + | chr8.2:21371954-21371973 | None:intergenic | 30.0% | |
| !! | AGTTTCAATTAGGAAGCATT+TGG | - | chr8.2:21371457-21371476 | MS.gene72285:intron | 30.0% |
| !! | TCATTTTTCTAGTACTACCA+CGG | + | chr8.2:21371652-21371671 | None:intergenic | 30.0% |
| !!! | TTTCTTTTGGGGTTGATTTT+AGG | - | chr8.2:21371386-21371405 | MS.gene72285:intron | 30.0% |
| AAACTGCCTTCTTGATCAAA+TGG | + | chr8.2:21371442-21371461 | None:intergenic | 35.0% | |
| ATGAAATTGCGATTGGGAAT+GGG | + | chr8.2:21370416-21370435 | None:intergenic | 35.0% | |
| CAGGTATAGCTTATGAAAAC+AGG | - | chr8.2:21371215-21371234 | MS.gene72285:CDS | 35.0% | |
| GAGTAGAAAAATGTCTGACA+AGG | + | chr8.2:21371853-21371872 | None:intergenic | 35.0% | |
| GCTCAAGTTAAGTTTATCAC+TGG | - | chr8.2:21370759-21370778 | MS.gene72285:intron | 35.0% | |
| GTTATTCTTAGGGATTCTCA+TGG | - | chr8.2:21370732-21370751 | MS.gene72285:intron | 35.0% | |
| TCAAGAAGGCAGTTTCAATT+AGG | - | chr8.2:21371447-21371466 | MS.gene72285:intron | 35.0% | |
| TCTGTACCATTTGATCAAGA+AGG | - | chr8.2:21371433-21371452 | MS.gene72285:intron | 35.0% | |
| TTATTTACATATGGCGTGTG+TGG | - | chr8.2:21370980-21370999 | MS.gene72285:intron | 35.0% | |
| ! | ATAAAGAAGCGCATCAAACA+AGG | + | chr8.2:21372073-21372092 | None:intergenic | 35.0% |
| ! | TTGATTGTCAATGTGTTGCT+TGG | - | chr8.2:21371621-21371640 | MS.gene72285:intron | 35.0% |
| !! | ATGTTATTGCTTTTGTCGGT+TGG | - | chr8.2:21372157-21372176 | MS.gene72285:intron | 35.0% |
| !! | CATTTTTCTAGTACTACCAC+GGG | + | chr8.2:21371651-21371670 | None:intergenic | 35.0% |
| !! | TCAGATCGGTGTTATTCTTA+GGG | - | chr8.2:21370722-21370741 | MS.gene72285:intron | 35.0% |
| ACTTGGAGTCCTTATCCTTT+CGG | + | chr8.2:21371490-21371509 | None:intergenic | 40.0% | |
| AGAATAACACCGATCTGAGA+TGG | + | chr8.2:21370720-21370739 | None:intergenic | 40.0% | |
| ATCAAATGGTACAGATCCTC+AGG | + | chr8.2:21371428-21371447 | None:intergenic | 40.0% | |
| CAAAATCCTTAGGATCCTCA+AGG | - | chr8.2:21370785-21370804 | MS.gene72285:intron | 40.0% | |
| CACAAGAATCAACCTGAACT+TGG | + | chr8.2:21371507-21371526 | None:intergenic | 40.0% | |
| CCTCTGCTTTACCATACAAA+AGG | - | chr8.2:21370530-21370549 | MS.gene72285:intron | 40.0% | |
| CTAAAATTCTAGCATCAGGC+AGG | + | chr8.2:21372113-21372132 | None:intergenic | 40.0% | |
| GATGAAATTGCGATTGGGAA+TGG | + | chr8.2:21370417-21370436 | None:intergenic | 40.0% | |
| GCTCTCTTAATCAGTTTCAC+AGG | + | chr8.2:21371041-21371060 | None:intergenic | 40.0% | |
| TACAGATCCTCAGGAATTTC+CGG | + | chr8.2:21371419-21371438 | None:intergenic | 40.0% | |
| TCTTGTAATAGCGAGCAAGA+CGG | + | chr8.2:21371544-21371563 | None:intergenic | 40.0% | |
| TGAAATTGCGATTGGGAATG+GGG | + | chr8.2:21370415-21370434 | None:intergenic | 40.0% | |
| ! | CCTTTTGTATGGTAAAGCAG+AGG | + | chr8.2:21370533-21370552 | None:intergenic | 40.0% |
| ! | CTGCCTGATGCTAGAATTTT+AGG | - | chr8.2:21372111-21372130 | MS.gene72285:CDS | 40.0% |
| !! | CAAGTTCAGGTTGATTCTTG+TGG | - | chr8.2:21371505-21371524 | MS.gene72285:intron | 40.0% |
| !! | CAATTAGGAAGCATTTGGAG+AGG | - | chr8.2:21371462-21371481 | MS.gene72285:intron | 40.0% |
| !! | CTCAGATCGGTGTTATTCTT+AGG | - | chr8.2:21370721-21370740 | MS.gene72285:intron | 40.0% |
| !!! | GTTGATTTTAGGACTTGCAC+CGG | - | chr8.2:21371397-21371416 | MS.gene72285:intron | 40.0% |
| ACTTACTACTTCCAGACTGG+TGG | + | chr8.2:21371581-21371600 | None:intergenic | 45.0% | |
| AGAACATACCATGAGCCTTG+AGG | + | chr8.2:21370803-21370822 | None:intergenic | 45.0% | |
| AGGATAAGGACTCCAAGTTC+AGG | - | chr8.2:21371492-21371511 | MS.gene72285:intron | 45.0% | |
| ATCAACAACTGCCAGCACTT+TGG | - | chr8.2:21372254-21372273 | MS.gene72285:intron | 45.0% | |
| CTTACTACTTCCAGACTGGT+GGG | + | chr8.2:21371580-21371599 | None:intergenic | 45.0% | |
| GGTACTTACTACTTCCAGAC+TGG | + | chr8.2:21371584-21371603 | None:intergenic | 45.0% | |
| GGTTTGACTCCATCTCAGAT+CGG | - | chr8.2:21370708-21370727 | MS.gene72285:intron | 45.0% | |
| TCACTGGCAGCAAAATCCTT+AGG | - | chr8.2:21370775-21370794 | MS.gene72285:intron | 45.0% | |
| ACAAAAGGTCTGCACCAGGA+TGG | - | chr8.2:21370545-21370564 | MS.gene72285:intron | 50.0% | |
| ACTTGCACCGGAAATTCCTG+AGG | - | chr8.2:21371409-21371428 | MS.gene72285:intron | 50.0% | |
| CATGAGCCTTGAGGATCCTA+AGG | + | chr8.2:21370794-21370813 | None:intergenic | 50.0% | |
| CCATACAAAAGGTCTGCACC+AGG | - | chr8.2:21370541-21370560 | MS.gene72285:intron | 50.0% | |
| CTTAGGATCCTCAAGGCTCA+TGG | - | chr8.2:21370792-21370811 | MS.gene72285:intron | 50.0% | |
| GCATTTGGAGAGGAACCGAA+AGG | - | chr8.2:21371472-21371491 | MS.gene72285:intron | 50.0% | |
| GGAGAGGAACCGAAAGGATA+AGG | - | chr8.2:21371478-21371497 | MS.gene72285:intron | 50.0% | |
| TGTAATAGCGAGCAAGACGG+TGG | + | chr8.2:21371541-21371560 | None:intergenic | 50.0% | |
| TGTCTTCGTGTTTGCTTCCG+TGG | - | chr8.2:21371934-21371953 | MS.gene72285:CDS | 50.0% | |
| TTGCGATTGGGAATGGGGAA+TGG | + | chr8.2:21370410-21370429 | None:intergenic | 50.0% | |
| ! | CCTGGTGCAGACCTTTTGTA+TGG | + | chr8.2:21370544-21370563 | None:intergenic | 50.0% |
| ATGGGGCGTATGCATAGTGG+CGG | - | chr8.2:21370376-21370395 | MS.gene72285:CDS | 55.0% | |
| GTAGAGGTCTTGAGCCATCC+TGG | + | chr8.2:21370562-21370581 | None:intergenic | 55.0% | |
| TCTAGCATCAGGCAGGCATG+TGG | + | chr8.2:21372106-21372125 | None:intergenic | 55.0% | |
| !! | TGTGTTGCTTGGTTTGCCCG+TGG | - | chr8.2:21371632-21371651 | MS.gene72285:intron | 55.0% |
| CCAAGAAGCTCCCACCAGTC+TGG | - | chr8.2:21371567-21371586 | MS.gene72285:intron | 60.0% | |
| CCAGACTGGTGGGAGCTTCT+TGG | + | chr8.2:21371570-21371589 | None:intergenic | 60.0% | |
| TGGGGCGTATGCATAGTGGC+GGG | - | chr8.2:21370377-21370396 | MS.gene72285:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21370376 | 21372284 | 21370376 | ID=MS.gene72285 |
| chr8.2 | mRNA | 21370376 | 21372284 | 21370376 | ID=MS.gene72285.t1;Parent=MS.gene72285 |
| chr8.2 | exon | 21372262 | 21372284 | 21372262 | ID=MS.gene72285.t1.exon1;Parent=MS.gene72285.t1 |
| chr8.2 | CDS | 21372262 | 21372284 | 21372262 | ID=cds.MS.gene72285.t1;Parent=MS.gene72285.t1 |
| chr8.2 | exon | 21372072 | 21372144 | 21372072 | ID=MS.gene72285.t1.exon2;Parent=MS.gene72285.t1 |
| chr8.2 | CDS | 21372072 | 21372144 | 21372072 | ID=cds.MS.gene72285.t1;Parent=MS.gene72285.t1 |
| chr8.2 | exon | 21371847 | 21371985 | 21371847 | ID=MS.gene72285.t1.exon3;Parent=MS.gene72285.t1 |
| chr8.2 | CDS | 21371847 | 21371985 | 21371847 | ID=cds.MS.gene72285.t1;Parent=MS.gene72285.t1 |
| chr8.2 | exon | 21371066 | 21371252 | 21371066 | ID=MS.gene72285.t1.exon4;Parent=MS.gene72285.t1 |
| chr8.2 | CDS | 21371066 | 21371252 | 21371066 | ID=cds.MS.gene72285.t1;Parent=MS.gene72285.t1 |
| chr8.2 | exon | 21370376 | 21370409 | 21370376 | ID=MS.gene72285.t1.exon5;Parent=MS.gene72285.t1 |
| chr8.2 | CDS | 21370376 | 21370409 | 21370376 | ID=cds.MS.gene72285.t1;Parent=MS.gene72285.t1 |
| Gene Sequence |
| Protein sequence |
