AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042142.t1 MTR_4g132850 99.603 252 1 0 1 252 1 252 0.0 509
MS.gene042142.t1 MTR_3g068070 33.333 246 159 4 7 248 15 259 2.17e-36 130
MS.gene042142.t1 MTR_3g068065 32.927 246 160 4 7 248 17 261 1.44e-35 128
MS.gene042142.t1 MTR_3g068175 35.366 246 154 4 7 248 17 261 1.27e-34 125
MS.gene042142.t1 MTR_7g063270 33.984 256 157 7 5 250 12 265 3.17e-34 124
MS.gene042142.t1 MTR_3g068085 31.707 246 163 4 7 248 15 259 9.35e-34 123
MS.gene042142.t1 MTR_4g064887 32.114 246 162 4 7 248 15 259 4.05e-33 121
MS.gene042142.t1 MTR_4g064883 32.932 249 156 5 7 248 14 258 1.49e-32 120
MS.gene042142.t1 MTR_3g068175 34.800 250 154 5 7 248 17 265 2.05e-32 120
MS.gene042142.t1 MTR_7g063260 33.984 256 158 7 5 250 12 266 1.38e-31 117
MS.gene042142.t1 MTR_3g068155 31.967 244 161 4 9 248 21 263 1.52e-30 115
MS.gene042142.t1 MTR_7g063320 31.200 250 163 5 7 248 15 263 4.83e-29 110
MS.gene042142.t1 MTR_7g063330 32.271 251 162 5 7 250 15 264 2.65e-28 108
MS.gene042142.t1 MTR_6g023610 32.271 251 157 6 6 246 12 259 1.86e-27 106
MS.gene042142.t1 MTR_1g082760 29.249 253 165 6 6 247 39 288 9.38e-27 105
MS.gene042142.t1 MTR_7g107670 28.846 260 166 7 5 250 31 285 1.10e-26 105
MS.gene042142.t1 MTR_6g023990 31.765 255 157 6 6 248 13 262 1.64e-26 103
MS.gene042142.t1 MTR_7g071680 31.502 273 158 9 4 250 26 295 2.80e-26 104
MS.gene042142.t1 MTR_6g023590 32.031 256 155 7 6 248 12 261 5.79e-26 102
MS.gene042142.t1 MTR_7g113650 27.559 254 170 6 5 247 38 288 9.01e-26 102
MS.gene042142.t1 MTR_6g023910 31.076 251 160 6 6 246 12 259 1.11e-25 102
MS.gene042142.t1 MTR_7g063360 32.400 250 160 5 7 248 16 264 1.18e-25 102
MS.gene042142.t1 MTR_7g063390 31.200 250 163 5 7 248 16 264 1.88e-25 101
MS.gene042142.t1 MTR_1196s0010 32.283 254 150 7 5 248 272 513 5.75e-25 103
MS.gene042142.t1 MTR_3g085740 31.128 257 159 8 2 248 70 318 7.33e-25 100
MS.gene042142.t1 MTR_6g023600 33.463 257 150 8 6 248 12 261 1.24e-24 99.0
MS.gene042142.t1 MTR_4g078630 30.916 262 161 7 4 250 16 272 1.73e-24 99.0
MS.gene042142.t1 MTR_7g105460 31.250 256 161 7 3 248 9 259 3.35e-24 98.2
MS.gene042142.t1 MTR_7g083870 30.385 260 163 9 5 250 33 288 5.83e-24 98.2
MS.gene042142.t1 MTR_3g020670 34.340 265 144 10 5 248 14 269 6.45e-24 97.4
MS.gene042142.t1 MTR_7g063270 30.315 254 120 7 5 250 12 216 8.57e-24 95.9
MS.gene042142.t1 MTR_6g023950 31.225 253 161 7 6 248 12 261 3.35e-22 92.4
MS.gene042142.t1 MTR_7g094510 30.120 249 165 7 7 247 6 253 4.98e-22 92.0
MS.gene042142.t1 MTR_4g131740 29.297 256 164 8 6 248 39 290 1.22e-21 91.7
MS.gene042142.t1 MTR_4g064887 31.606 193 127 4 7 195 15 206 1.47e-21 90.1
MS.gene042142.t1 MTR_4g052350 28.458 253 165 7 5 248 12 257 5.68e-21 89.4
MS.gene042142.t1 MTR_4g052300 27.490 251 168 6 6 248 7 251 2.70e-20 87.4
MS.gene042142.t1 MTR_7g094520 29.762 252 164 8 7 248 11 259 3.25e-20 87.0
MS.gene042142.t1 MTR_8g442750 30.469 256 166 4 4 248 11 265 3.65e-20 87.8
MS.gene042142.t1 MTR_4g052340 28.185 259 158 10 3 246 10 255 5.38e-20 86.7
MS.gene042142.t1 MTR_7g110130 29.921 254 166 6 5 249 4 254 7.95e-20 86.3
MS.gene042142.t1 MTR_6g023600 32.685 257 146 9 6 248 12 255 8.71e-20 85.9
MS.gene042142.t1 MTR_2g090165 28.175 252 170 5 5 248 4 252 1.70e-19 85.1
MS.gene042142.t1 MTR_4g064883 31.250 192 121 5 7 191 14 201 2.17e-19 84.0
MS.gene042142.t1 MTR_7g105590 30.688 189 125 5 3 187 4 190 2.58e-19 83.2
MS.gene042142.t1 MTR_4g052320 27.381 252 168 7 6 248 7 252 5.33e-18 81.3
MS.gene042142.t1 MTR_7g105580 27.843 255 151 7 3 247 4 235 6.79e-18 80.9
MS.gene042142.t1 MTR_6g035395 30.196 255 152 9 3 248 1 238 7.67e-17 77.8
MS.gene042142.t1 MTR_7g110140 30.196 255 159 7 6 248 5 252 9.30e-17 77.8
MS.gene042142.t1 MTR_8g096620 26.667 225 147 4 3 222 41 252 4.28e-16 77.0
MS.gene042142.t1 MTR_7g105570 32.418 182 110 6 77 248 38 216 7.61e-16 74.7
MS.gene042142.t1 MTR_4g058840 27.757 263 168 9 1 247 5 261 8.42e-16 75.1
MS.gene042142.t1 MTR_4g058820 27.757 263 168 9 1 247 5 261 8.42e-16 75.1
MS.gene042142.t1 MTR_4g058810 25.097 259 180 7 1 247 5 261 1.51e-14 71.6
MS.gene042142.t1 MTR_7g110160 27.092 251 158 6 4 248 3 234 2.12e-14 70.9
MS.gene042142.t1 MTR_1g068955 27.413 259 164 7 4 246 11 261 4.15e-14 70.5
MS.gene042142.t1 MTR_8g044240 27.979 193 126 6 13 193 75 266 1.21e-13 69.7
MS.gene042142.t1 MTR_8g096580 26.042 192 131 5 10 194 48 235 1.07e-12 67.0
MS.gene042142.t1 MTR_7g080410 27.513 189 130 5 10 191 41 229 1.43e-12 66.2
MS.gene042142.t1 MTR_7g080410 27.513 189 130 5 10 191 41 229 2.26e-12 65.9
MS.gene042142.t1 MTR_4g084800 30.075 133 90 2 2 133 8 138 2.99e-12 63.2
MS.gene042142.t1 MTR_3g113870 26.776 183 127 5 15 193 29 208 5.86e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042142.t1 AT4G05530 73.705 251 66 0 2 252 4 254 5.24e-136 383
MS.gene042142.t1 AT5G06060 34.252 254 160 5 1 248 1 253 1.74e-36 130
MS.gene042142.t1 AT2G29150 34.538 249 149 8 7 247 16 258 1.78e-33 122
MS.gene042142.t1 AT2G29260 33.333 246 159 4 7 248 68 312 7.73e-32 119
MS.gene042142.t1 AT2G29360 33.197 244 158 5 9 248 18 260 7.78e-31 115
MS.gene042142.t1 AT2G29340 32.540 252 159 6 5 248 3 251 4.64e-30 113
MS.gene042142.t1 AT2G29340 32.540 252 159 6 5 248 3 251 8.96e-30 113
MS.gene042142.t1 AT2G29370 30.435 253 164 6 4 248 12 260 6.76e-28 107
MS.gene042142.t1 AT2G29290 31.621 253 160 7 5 248 3 251 1.74e-27 106
MS.gene042142.t1 AT2G29330 32.016 253 159 7 5 248 3 251 1.76e-27 106
MS.gene042142.t1 AT3G26760 30.502 259 162 7 5 248 34 289 3.11e-27 106
MS.gene042142.t1 AT2G29350 32.800 250 148 8 9 247 17 257 1.51e-25 101
MS.gene042142.t1 AT3G05260 29.921 254 163 7 6 248 36 285 2.08e-25 101
MS.gene042142.t1 AT1G07440 30.488 246 165 5 7 248 12 255 6.51e-25 100
MS.gene042142.t1 AT2G30670 31.250 256 157 8 5 248 3 251 9.83e-25 99.4
MS.gene042142.t1 AT2G29300 29.845 258 163 8 3 248 1 252 1.37e-24 99.0
MS.gene042142.t1 AT2G29300 29.845 258 163 8 3 248 1 252 2.26e-24 99.0
MS.gene042142.t1 AT2G47130 33.068 251 154 6 6 247 5 250 3.11e-24 97.8
MS.gene042142.t1 AT1G54870 27.668 253 169 5 6 247 81 330 9.32e-24 98.2
MS.gene042142.t1 AT1G54870 27.668 253 169 5 6 247 83 332 9.38e-24 98.2
MS.gene042142.t1 AT1G07450 30.078 256 166 7 1 248 1 251 1.59e-23 96.3
MS.gene042142.t1 AT2G47120 30.682 264 154 10 6 251 5 257 3.14e-23 95.1
MS.gene042142.t1 AT2G47120 30.682 264 154 10 6 251 6 258 3.44e-23 95.1
MS.gene042142.t1 AT3G04000 29.057 265 161 7 4 247 11 269 4.35e-23 95.1
MS.gene042142.t1 AT2G29320 30.159 252 160 7 7 248 13 258 4.67e-23 95.1
MS.gene042142.t1 AT3G26770 29.615 260 161 9 5 248 39 292 5.24e-23 95.5
MS.gene042142.t1 AT4G13180 31.600 250 158 7 9 248 15 261 7.18e-23 94.4
MS.gene042142.t1 AT5G18210 32.400 250 155 8 9 246 10 257 7.75e-23 94.4
MS.gene042142.t1 AT2G29290 30.303 231 150 6 25 248 8 234 2.47e-22 92.4
MS.gene042142.t1 AT3G51680 30.769 273 158 9 4 250 29 296 5.47e-22 92.8
MS.gene042142.t1 AT3G29260 31.102 254 157 7 5 247 4 250 1.79e-21 90.5
MS.gene042142.t1 AT3G47350 29.048 210 133 5 9 204 46 253 1.93e-21 91.7
MS.gene042142.t1 AT3G47350 29.048 210 133 5 9 204 46 253 2.46e-21 91.3
MS.gene042142.t1 AT2G29310 29.249 253 166 6 5 248 3 251 3.47e-21 89.7
MS.gene042142.t1 AT3G29250 32.946 258 150 11 6 249 5 253 3.99e-21 89.7
MS.gene042142.t1 AT2G47140 30.620 258 154 7 5 247 4 251 5.05e-21 89.4
MS.gene042142.t1 AT1G24360 28.794 257 165 8 2 248 69 317 5.51e-21 90.5
MS.gene042142.t1 AT3G42960 31.298 262 159 8 5 250 6 262 7.05e-21 89.4
MS.gene042142.t1 AT3G29250 32.283 254 155 9 6 248 41 288 1.01e-20 89.4
MS.gene042142.t1 AT3G03980 28.958 259 168 7 4 247 11 268 2.26e-20 87.8
MS.gene042142.t1 AT4G03140 26.562 256 173 7 5 248 76 328 4.04e-20 88.2
MS.gene042142.t1 AT1G63380 30.916 262 150 11 7 247 17 268 6.79e-20 86.7
MS.gene042142.t1 AT1G63380 30.916 262 150 11 7 247 15 266 7.16e-20 86.7
MS.gene042142.t1 AT1G63380 30.916 262 150 11 7 247 19 270 7.29e-20 86.7
MS.gene042142.t1 AT3G29250 32.271 251 153 9 9 248 46 290 8.17e-20 86.7
MS.gene042142.t1 AT1G63380 30.916 262 150 11 7 247 22 273 8.86e-20 86.7
MS.gene042142.t1 AT2G29350 32.301 226 133 8 33 247 3 219 9.54e-20 85.5
MS.gene042142.t1 AT3G12800 29.885 261 162 6 4 248 7 262 1.01e-19 86.7
MS.gene042142.t1 AT1G52340 28.986 276 147 10 5 248 16 274 2.87e-19 85.1
MS.gene042142.t1 AT1G62610 30.682 264 148 11 7 247 19 270 1.23e-18 83.2
MS.gene042142.t1 AT1G62610 30.682 264 148 11 7 247 13 264 1.24e-18 83.2
MS.gene042142.t1 AT1G62610 30.682 264 148 11 7 247 14 265 1.27e-18 83.2
MS.gene042142.t1 AT5G18210 32.203 236 146 8 9 232 10 243 1.35e-18 83.2
MS.gene042142.t1 AT1G62610 30.682 264 148 11 7 247 15 266 1.40e-18 83.2
MS.gene042142.t1 AT3G47360 29.947 187 125 4 10 192 48 232 2.18e-18 83.2
MS.gene042142.t1 AT2G29320 29.237 236 151 7 23 248 11 240 3.49e-18 81.6
MS.gene042142.t1 AT3G55290 28.906 256 162 9 7 247 18 268 6.14e-18 81.3
MS.gene042142.t1 AT3G55290 28.906 256 162 9 7 247 17 267 6.97e-18 81.3
MS.gene042142.t1 AT2G29340 30.769 195 128 5 3 191 1 194 9.51e-18 79.3
MS.gene042142.t1 AT2G29340 30.769 195 128 5 3 191 1 194 9.51e-18 79.3
MS.gene042142.t1 AT3G46170 29.119 261 157 10 6 247 25 276 4.43e-17 79.0
MS.gene042142.t1 AT2G17845 27.027 259 166 9 7 247 47 300 5.07e-17 79.3
MS.gene042142.t1 AT3G55310 28.195 266 163 10 1 247 11 267 3.57e-16 76.6
MS.gene042142.t1 AT5G50600 27.128 188 125 5 9 189 47 229 5.98e-16 76.6
MS.gene042142.t1 AT5G50700 27.128 188 125 5 9 189 47 229 5.98e-16 76.6
MS.gene042142.t1 AT2G29350 31.579 190 119 6 9 191 17 202 6.48e-16 74.7
MS.gene042142.t1 AT2G29310 27.897 233 157 5 23 248 21 249 9.33e-16 75.1
MS.gene042142.t1 AT5G50690 27.513 189 131 4 5 189 43 229 5.40e-15 72.8
MS.gene042142.t1 AT5G50590 27.513 189 131 4 5 189 43 229 5.40e-15 72.8
MS.gene042142.t1 AT5G50690 27.513 189 131 4 5 189 43 229 1.45e-14 72.0
MS.gene042142.t1 AT5G50590 27.513 189 131 4 5 189 43 229 1.45e-14 72.0
MS.gene042142.t1 AT3G03330 28.646 192 129 5 8 191 42 233 2.18e-13 68.9
MS.gene042142.t1 AT5G04900 28.272 191 127 4 13 193 83 273 2.52e-13 68.9
MS.gene042142.t1 AT5G50770 25.980 204 137 5 9 203 47 245 2.52e-11 63.2
MS.gene042142.t1 AT4G10020 25.143 175 125 3 5 175 45 217 2.95e-11 63.2

Find 61 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTCCTTTGAATCTCTT+TGG 0.229084 8.3:-1202780 None:intergenic
TTTGGCTTGTTACAGAAGTA+TGG 0.300714 8.3:+1203563 MS.gene042142:intron
GAAGAACCCTTCGGCAAGTA+TGG 0.332535 8.3:-1203911 None:intergenic
AAGGCCAAGAAGGGCTGTTT+TGG 0.335058 8.3:-1203999 None:intergenic
ATTCGGTCCTTGACAAGTTA+TGG 0.346257 8.3:+1203654 MS.gene042142:CDS
GTAACCAAAACAGCCCTTCT+TGG 0.370781 8.3:+1203995 MS.gene042142:CDS
ACTTGTCAAGGACCGAATCT+TGG 0.376699 8.3:-1203649 None:intergenic
CTTGAAGCAAAGACATTACT+TGG 0.379309 8.3:+1204523 MS.gene042142:CDS
TTATCACCCACCAGCTAGTA+TGG 0.380678 8.3:+1203961 MS.gene042142:CDS
ACTCACCATAGCAGAATTAC+TGG 0.391347 8.3:-1204217 None:intergenic
TGCAAATACATCAATTCCTT+TGG 0.391428 8.3:-1203115 None:intergenic
GGAGAAACTATAGTAGTTTC+CGG 0.394523 8.3:+1204619 MS.gene042142:CDS
TTCGGTCCTTGACAAGTTAT+GGG 0.394972 8.3:+1203655 MS.gene042142:CDS
ACTGCTTCAACACAGGGAAT+TGG 0.396053 8.3:+1202813 MS.gene042142:CDS
CATTGCTGAGAGACTTGGTT+TGG 0.401132 8.3:+1202842 MS.gene042142:CDS
GATGATGCGTCATATATAAC+AGG 0.401523 8.3:+1204598 MS.gene042142:CDS
TAGGGGCCATCTCAGCAGCC+AGG 0.410588 8.3:-1204134 None:intergenic
CGAATCTTGGGTTTGCAGAA+TGG 0.413839 8.3:-1203636 None:intergenic
CTTGTCAAGGACCGAATCTT+GGG 0.415114 8.3:-1203648 None:intergenic
GTAGGCCCTGGCTGCTGAGA+TGG 0.440474 8.3:+1204128 MS.gene042142:intron
AGAAGGATTTGCAGCAGCAT+TGG 0.451910 8.3:-1203606 None:intergenic
TGTTATCTCTTCTCGCAGAC+AGG 0.457846 8.3:+1202878 MS.gene042142:CDS
GATCGTGACTGCTTCAACAC+AGG 0.459705 8.3:+1202806 MS.gene042142:CDS
CCAGCTAGTATGGCTATGTA+TGG 0.467840 8.3:+1203971 MS.gene042142:CDS
TTTACCATTGCTGAGAGACT+TGG 0.472945 8.3:+1202837 MS.gene042142:CDS
TACCTTCAGAAGAAGTATAG+TGG 0.476458 8.3:-1203693 None:intergenic
CGTGTAAACTGTGTTGCTCC+TGG 0.479482 8.3:+1204162 MS.gene042142:CDS
CATTCTGCAAACCCAAGATT+CGG 0.481732 8.3:+1203637 MS.gene042142:CDS
TGTAGCAGCACCCATGTCTT+CGG 0.486116 8.3:-1204560 None:intergenic
AGGGGCCATCTCAGCAGCCA+GGG 0.499508 8.3:-1204133 None:intergenic
GTTATCATTTCATCGATCGC+TGG 0.504376 8.3:+1203938 MS.gene042142:CDS
CGACTTTGGTAAGGCCAAGA+AGG 0.505337 8.3:-1204009 None:intergenic
ATGAATGAAGCAAAATTAGT+TGG 0.506154 8.3:-1204192 None:intergenic
CTCAAATGCTCTACAAAGGA+AGG 0.512057 8.3:+1203152 MS.gene042142:CDS
GAAATTCCAAAGAGATTCAA+AGG 0.522716 8.3:+1202774 MS.gene042142:CDS
ACTTGGTACAACCGAAGACA+TGG 0.533738 8.3:+1204549 MS.gene042142:CDS
AAGACATTACTTGGAAGACT+TGG 0.543455 8.3:+1204532 MS.gene042142:CDS
TTTGATTGACAAAACTGTCC+AGG 0.545328 8.3:+1203176 MS.gene042142:CDS
TTTGTAGAGCATTTGAGACA+TGG 0.550170 8.3:-1203146 None:intergenic
TCCAAAGAGATTCAAAGGAA+AGG 0.550796 8.3:+1202779 MS.gene042142:CDS
GGCAAGTACCGACTTTGGTA+AGG 0.550957 8.3:-1204018 None:intergenic
CATCACCAGTAATTCTGCTA+TGG 0.551246 8.3:+1204212 MS.gene042142:CDS
GACTTTGGTAAGGCCAAGAA+GGG 0.555272 8.3:-1204008 None:intergenic
GCTGAGAGACTTGGTTTGGA+AGG 0.565863 8.3:+1202846 MS.gene042142:CDS
TTATCTCCCATAACTTGTCA+AGG 0.576972 8.3:-1203661 None:intergenic
TGCAGAATGGAATCAACAGA+AGG 0.579952 8.3:-1203623 None:intergenic
CCATACATAGCCATACTAGC+TGG 0.584897 8.3:-1203971 None:intergenic
TGCAGCTCCATACTTGCCGA+AGG 0.587100 8.3:+1203904 MS.gene042142:CDS
ATCGTGACTGCTTCAACACA+GGG 0.594859 8.3:+1202807 MS.gene042142:CDS
AGCCACTATACTTCTTCTGA+AGG 0.599186 8.3:+1203691 MS.gene042142:CDS
TACATAGCCATACTAGCTGG+TGG 0.601638 8.3:-1203968 None:intergenic
CAGTCTCGATGGCATTCCGC+CGG 0.603575 8.3:-1204638 None:intergenic
AAATTAGTTGGTACAAAACC+AGG 0.611900 8.3:-1204180 None:intergenic
ATAACAACAGAAGAACCCTT+CGG 0.615477 8.3:-1203920 None:intergenic
CAAACCAAGTCTCTCAGCAA+TGG 0.620172 8.3:-1202841 None:intergenic
AATGGAAGCTACAGTCTCGA+TGG 0.627135 8.3:-1204649 None:intergenic
ATGTCTCAAATGCTCTACAA+AGG 0.639990 8.3:+1203148 MS.gene042142:CDS
ACATAGCCATACTAGCTGGT+GGG 0.645983 8.3:-1203967 None:intergenic
GCAGCTCCATACTTGCCGAA+GGG 0.672297 8.3:+1203905 MS.gene042142:CDS
CTTGGTACAACCGAAGACAT+GGG 0.677968 8.3:+1204550 MS.gene042142:CDS
GAAACTATAGTAGTTTCCGG+CGG 0.735826 8.3:+1204622 MS.gene042142:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG - chr8.3:1203784-1203765 None:intergenic 0.0%
!! ACCAAATTAAAAAAATAATA+TGG - chr8.3:1203048-1203067 None:intergenic 10.0%
!!! TCCATATTATTTTTTTAATT+TGG + chr8.3:1203044-1203063 MS.gene042142:intron 10.0%
!! ATTATGTAAATATAATGTGT+AGG + chr8.3:1204110-1204129 MS.gene042142:intron 15.0%
!!! AATATGTGTTTGAATTTTTT+TGG + chr8.3:1203545-1203564 MS.gene042142:intron 15.0%
!! AAAAACAGTAACAATTCATA+TGG - chr8.3:1204066-1204085 None:intergenic 20.0%
!! GAATGAATCAAATAAGAAAA+AGG - chr8.3:1202911-1202930 None:intergenic 20.0%
!! GTAAATTATTGTATGAGAAT+TGG + chr8.3:1202959-1202978 MS.gene042142:intron 20.0%
!! TGTACAAGTTTAAATAGAAT+TGG + chr8.3:1203417-1203436 MS.gene042142:intron 20.0%
!! TTGTACAAAATATGAATGAT+GGG - chr8.3:1203404-1203423 None:intergenic 20.0%
!!! ATGTTTTGTCATTATGATTT+TGG + chr8.3:1203448-1203467 MS.gene042142:intron 20.0%
! ACAAGTTTAAATAGAATTGG+CGG + chr8.3:1203420-1203439 MS.gene042142:intron 25.0%
! ATATATCATTTGTGTCTGAA+TGG + chr8.3:1204468-1204487 MS.gene042142:intron 25.0%
! ATGAATGAAGCAAAATTAGT+TGG - chr8.3:1204195-1204214 None:intergenic 25.0%
! CATATAGGATAGTTGTAAAA+TGG - chr8.3:1203304-1203323 None:intergenic 25.0%
! CTTGTACAAAATATGAATGA+TGG - chr8.3:1203405-1203424 None:intergenic 25.0%
! TAAGACATCAAATCTCATAT+AGG - chr8.3:1203319-1203338 None:intergenic 25.0%
!! GAGTATCTTTTTAACCAAAT+AGG + chr8.3:1204236-1204255 MS.gene042142:intron 25.0%
AGGTAATTAAGCTGTGAAAA+TGG + chr8.3:1203711-1203730 MS.gene042142:intron 30.0%
ATATTGAAGGAACAATTGGA+AGG - chr8.3:1204042-1204061 None:intergenic 30.0%
CAATTCATATGGCATATTGA+AGG - chr8.3:1204055-1204074 None:intergenic 30.0%
GAAATTCCAAAGAGATTCAA+AGG + chr8.3:1202774-1202793 MS.gene042142:CDS 30.0%
TGCAAATACATCAATTCCTT+TGG - chr8.3:1203118-1203137 None:intergenic 30.0%
TGTCTTTCTCACTATTTGAA+TGG + chr8.3:1203516-1203535 MS.gene042142:intron 30.0%
! AAATTAGTTGGTACAAAACC+AGG - chr8.3:1204183-1204202 None:intergenic 30.0%
! AGTGTGTTGATGTAGTAAAA+TGG + chr8.3:1203859-1203878 MS.gene042142:intron 30.0%
! CACAAGTCTTGTATTGAAAT+TGG - chr8.3:1203237-1203256 None:intergenic 30.0%
!!! TGTCATTATGATTTTGGCTT+TGG + chr8.3:1203454-1203473 MS.gene042142:intron 30.0%
AAGACATTACTTGGAAGACT+TGG + chr8.3:1204532-1204551 MS.gene042142:CDS 35.0%
ACCTTTCCTTTGAATCTCTT+TGG - chr8.3:1202783-1202802 None:intergenic 35.0%
ACTACACAAAGATGGAAGAA+AGG - chr8.3:1203842-1203861 None:intergenic 35.0%
ATAACAACAGAAGAACCCTT+CGG - chr8.3:1203923-1203942 None:intergenic 35.0%
ATCAACACACTACACAAAGA+TGG - chr8.3:1203850-1203869 None:intergenic 35.0%
ATGTCTCAAATGCTCTACAA+AGG + chr8.3:1203148-1203167 MS.gene042142:CDS 35.0%
CATTATCTTTGTCTACGTGT+TGG + chr8.3:1204415-1204434 MS.gene042142:intron 35.0%
CTACACAAAGATGGAAGAAA+GGG - chr8.3:1203841-1203860 None:intergenic 35.0%
CTGGACAGTATGTATGTTAT+TGG + chr8.3:1203368-1203387 MS.gene042142:intron 35.0%
CTTGAAGCAAAGACATTACT+TGG + chr8.3:1204523-1204542 MS.gene042142:CDS 35.0%
GATGATGCGTCATATATAAC+AGG + chr8.3:1204598-1204617 MS.gene042142:CDS 35.0%
GGAAAGAGGAAAAACCTATT+TGG - chr8.3:1204253-1204272 None:intergenic 35.0%
GGAGAAACTATAGTAGTTTC+CGG + chr8.3:1204619-1204638 MS.gene042142:CDS 35.0%
GGTGTCTGATAATTATACAC+AGG + chr8.3:1203880-1203899 MS.gene042142:intron 35.0%
TAAATATAATGTGTAGGCCC+TGG + chr8.3:1204116-1204135 MS.gene042142:intron 35.0%
TAGCAAATGATACACAACAC+AGG - chr8.3:1204284-1204303 None:intergenic 35.0%
TCCAAAGAGATTCAAAGGAA+AGG + chr8.3:1202779-1202798 MS.gene042142:CDS 35.0%
TGAGATTTGATGTCTTATCC+AGG + chr8.3:1203322-1203341 MS.gene042142:intron 35.0%
TGGCATATTGAAGGAACAAT+TGG - chr8.3:1204046-1204065 None:intergenic 35.0%
TTTGATTGACAAAACTGTCC+AGG + chr8.3:1203176-1203195 MS.gene042142:CDS 35.0%
! ACACAGTTTACACGAGTTTT+AGG - chr8.3:1204156-1204175 None:intergenic 35.0%
! CACAGTTTACACGAGTTTTA+GGG - chr8.3:1204155-1204174 None:intergenic 35.0%
! CTTTCAATCTAAAGTGTCAG+TGG - chr8.3:1204314-1204333 None:intergenic 35.0%
! TACCTTCAGAAGAAGTATAG+TGG - chr8.3:1203696-1203715 None:intergenic 35.0%
! TTATCTCCCATAACTTGTCA+AGG - chr8.3:1203664-1203683 None:intergenic 35.0%
! TTTGTAGAGCATTTGAGACA+TGG - chr8.3:1203149-1203168 None:intergenic 35.0%
!! ACAGTTTACACGAGTTTTAG+GGG - chr8.3:1204154-1204173 None:intergenic 35.0%
!! GATATATGAAGCACTGATAC+TGG - chr8.3:1204455-1204474 None:intergenic 35.0%
!! TTGTGTCTGAATGGATTTTG+TGG + chr8.3:1204477-1204496 MS.gene042142:intron 35.0%
!! TTTGGCTTGTTACAGAAGTA+TGG + chr8.3:1203563-1203582 MS.gene042142:intron 35.0%
ACTCACCATAGCAGAATTAC+TGG - chr8.3:1204220-1204239 None:intergenic 40.0%
AGAGAAGATGAATTCACACC+TGG - chr8.3:1203197-1203216 None:intergenic 40.0%
AGCCACTATACTTCTTCTGA+AGG + chr8.3:1203691-1203710 MS.gene042142:CDS 40.0%
ATGTAGCTGCTGAAAAACTG+AGG + chr8.3:1203091-1203110 MS.gene042142:CDS 40.0%
ATTCGGTCCTTGACAAGTTA+TGG + chr8.3:1203654-1203673 MS.gene042142:CDS 40.0%
CATCACCAGTAATTCTGCTA+TGG + chr8.3:1204212-1204231 MS.gene042142:CDS 40.0%
CATTCTGCAAACCCAAGATT+CGG + chr8.3:1203637-1203656 MS.gene042142:CDS 40.0%
CTCAAATGCTCTACAAAGGA+AGG + chr8.3:1203152-1203171 MS.gene042142:CDS 40.0%
GAAACTATAGTAGTTTCCGG+CGG + chr8.3:1204622-1204641 MS.gene042142:CDS 40.0%
GTTATCATTTCATCGATCGC+TGG + chr8.3:1203938-1203957 MS.gene042142:CDS 40.0%
TAACATACATACTGTCCAGC+TGG - chr8.3:1203367-1203386 None:intergenic 40.0%
TGCAGAATGGAATCAACAGA+AGG - chr8.3:1203626-1203645 None:intergenic 40.0%
TGTAGCTGCTGAAAAACTGA+GGG + chr8.3:1203092-1203111 MS.gene042142:CDS 40.0%
TTCGGTCCTTGACAAGTTAT+GGG + chr8.3:1203655-1203674 MS.gene042142:CDS 40.0%
TTTACCATTGCTGAGAGACT+TGG + chr8.3:1202837-1202856 MS.gene042142:CDS 40.0%
! TGGTCATTAGTGTTACTGCT+AGG - chr8.3:1203284-1203303 None:intergenic 40.0%
ACATAGCCATACTAGCTGGT+GGG - chr8.3:1203970-1203989 None:intergenic 45.0%
ACTGCTTCAACACAGGGAAT+TGG + chr8.3:1202813-1202832 MS.gene042142:CDS 45.0%
ACTTGGTACAACCGAAGACA+TGG + chr8.3:1204549-1204568 MS.gene042142:CDS 45.0%
ACTTGTCAAGGACCGAATCT+TGG - chr8.3:1203652-1203671 None:intergenic 45.0%
AGAAGGATTTGCAGCAGCAT+TGG - chr8.3:1203609-1203628 None:intergenic 45.0%
ATCGTGACTGCTTCAACACA+GGG + chr8.3:1202807-1202826 MS.gene042142:CDS 45.0%
CAAACCAAGTCTCTCAGCAA+TGG - chr8.3:1202844-1202863 None:intergenic 45.0%
CCAGCTAGTATGGCTATGTA+TGG + chr8.3:1203971-1203990 MS.gene042142:CDS 45.0%
CCATACATAGCCATACTAGC+TGG - chr8.3:1203974-1203993 None:intergenic 45.0%
CGAATCTTGGGTTTGCAGAA+TGG - chr8.3:1203639-1203658 None:intergenic 45.0%
CTTGGTACAACCGAAGACAT+GGG + chr8.3:1204550-1204569 MS.gene042142:CDS 45.0%
CTTGTCAAGGACCGAATCTT+GGG - chr8.3:1203651-1203670 None:intergenic 45.0%
GACTTTGGTAAGGCCAAGAA+GGG - chr8.3:1204011-1204030 None:intergenic 45.0%
GTAACCAAAACAGCCCTTCT+TGG + chr8.3:1203995-1204014 MS.gene042142:CDS 45.0%
TACACAACACAGGAGATTCG+AGG - chr8.3:1204274-1204293 None:intergenic 45.0%
TACATAGCCATACTAGCTGG+TGG - chr8.3:1203971-1203990 None:intergenic 45.0%
TGTTATCTCTTCTCGCAGAC+AGG + chr8.3:1202878-1202897 MS.gene042142:CDS 45.0%
TTATCACCCACCAGCTAGTA+TGG + chr8.3:1203961-1203980 MS.gene042142:CDS 45.0%
! AAGAACTGGACTTGGTAACC+TGG - chr8.3:1203343-1203362 None:intergenic 45.0%
! CATTGCTGAGAGACTTGGTT+TGG + chr8.3:1202842-1202861 MS.gene042142:CDS 45.0%
!! CTTCTTGGCCTTACCAAAGT+CGG + chr8.3:1204010-1204029 MS.gene042142:intron 45.0%
ACTGTCCAGCTGGTAAGAAC+TGG - chr8.3:1203357-1203376 None:intergenic 50.0%
CAAGTCCAGTTCTTACCAGC+TGG + chr8.3:1203349-1203368 MS.gene042142:intron 50.0%
CACAGGAGATTCGAGGAAAG+AGG - chr8.3:1204267-1204286 None:intergenic 50.0%
CAGCTGGTAAGAACTGGACT+TGG - chr8.3:1203351-1203370 None:intergenic 50.0%
CGACTTTGGTAAGGCCAAGA+AGG - chr8.3:1204012-1204031 None:intergenic 50.0%
GAAGAACCCTTCGGCAAGTA+TGG - chr8.3:1203914-1203933 None:intergenic 50.0%
GATCGTGACTGCTTCAACAC+AGG + chr8.3:1202806-1202825 MS.gene042142:CDS 50.0%
GCTGAAAAACTGAGGGCCAA+AGG + chr8.3:1203099-1203118 MS.gene042142:CDS 50.0%
TGTAGCAGCACCCATGTCTT+CGG - chr8.3:1204563-1204582 None:intergenic 50.0%
! AAGGCCAAGAAGGGCTGTTT+TGG - chr8.3:1204002-1204021 None:intergenic 50.0%
! CGTGTAAACTGTGTTGCTCC+TGG + chr8.3:1204162-1204181 MS.gene042142:CDS 50.0%
!! GCTGAGAGACTTGGTTTGGA+AGG + chr8.3:1202846-1202865 MS.gene042142:CDS 50.0%
!! GGCAAGTACCGACTTTGGTA+AGG - chr8.3:1204021-1204040 None:intergenic 50.0%
!! TGGAAGGCAAGTACCGACTT+TGG - chr8.3:1204026-1204045 None:intergenic 50.0%
!!! GGGTGCTGCTACAGCTTTTT+TGG + chr8.3:1204570-1204589 MS.gene042142:CDS 50.0%
GCAGCTCCATACTTGCCGAA+GGG + chr8.3:1203905-1203924 MS.gene042142:CDS 55.0%
TGCAGCTCCATACTTGCCGA+AGG + chr8.3:1203904-1203923 MS.gene042142:CDS 55.0%
CAGTCTCGATGGCATTCCGC+CGG - chr8.3:1204641-1204660 None:intergenic 60.0%
AGGGGCCATCTCAGCAGCCA+GGG - chr8.3:1204136-1204155 None:intergenic 65.0%
GTAGGCCCTGGCTGCTGAGA+TGG + chr8.3:1204128-1204147 MS.gene042142:intron 65.0%
TAGGGGCCATCTCAGCAGCC+AGG - chr8.3:1204137-1204156 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 1202771 1204663 1202771 ID=MS.gene042142
chr8.3 mRNA 1202771 1204663 1202771 ID=MS.gene042142.t1;Parent=MS.gene042142
chr8.3 exon 1202771 1202899 1202771 ID=MS.gene042142.t1.exon1;Parent=MS.gene042142.t1
chr8.3 CDS 1202771 1202899 1202771 ID=cds.MS.gene042142.t1;Parent=MS.gene042142.t1
chr8.3 exon 1203081 1203197 1203081 ID=MS.gene042142.t1.exon2;Parent=MS.gene042142.t1
chr8.3 CDS 1203081 1203197 1203081 ID=cds.MS.gene042142.t1;Parent=MS.gene042142.t1
chr8.3 exon 1203578 1203712 1203578 ID=MS.gene042142.t1.exon3;Parent=MS.gene042142.t1
chr8.3 CDS 1203578 1203712 1203578 ID=cds.MS.gene042142.t1;Parent=MS.gene042142.t1
chr8.3 exon 1203902 1204027 1203902 ID=MS.gene042142.t1.exon4;Parent=MS.gene042142.t1
chr8.3 CDS 1203902 1204027 1203902 ID=cds.MS.gene042142.t1;Parent=MS.gene042142.t1
chr8.3 exon 1204132 1204233 1204132 ID=MS.gene042142.t1.exon5;Parent=MS.gene042142.t1
chr8.3 CDS 1204132 1204233 1204132 ID=cds.MS.gene042142.t1;Parent=MS.gene042142.t1
chr8.3 exon 1204514 1204663 1204514 ID=MS.gene042142.t1.exon6;Parent=MS.gene042142.t1
chr8.3 CDS 1204514 1204663 1204514 ID=cds.MS.gene042142.t1;Parent=MS.gene042142.t1
Gene Sequence

>MS.gene042142

ATGGAAATTCCAAAGAGATTCAAAGGAAAGGTTGCGATCGTGACTGCTTCAACACAGGGAATTGGTTTTACCATTGCTGAGAGACTTGGTTTGGAAGGTGCTTCTGTTGTTATCTCTTCTCGCAGACAGGTTTTCTTCCTTTTTCTTATTTGATTCATTCATTCATTCATATTTCTCTCAGAAAGTATGTAAATTATTGTATGAGAATTGGTTAGAGAAAAGTTAATTGTTCAAACAAGTGATTTATCATGTATTAATATCATAATTGATTAATCCATATTATTTTTTTAATTTGGTTGAATCGCTGCAGAAAAATGTTGATGTAGCTGCTGAAAAACTGAGGGCCAAAGGAATTGATGTATTTGCAGTTGTTTGCCATGTCTCAAATGCTCTACAAAGGAAGGATTTGATTGACAAAACTGTCCAGGTGTGAATTCATCTTCTCTTGTGAATGTGATCTTGTCCAATTTCAATACAAGACTTGTGTCGATTTTATCTTTGCATTCAGTTCCTAGCAGTAACACTAATGACCATTTTACAACTATCCTATATGAGATTTGATGTCTTATCCAGGTTACCAAGTCCAGTTCTTACCAGCTGGACAGTATGTATGTTATTGGAATCTTAACACCCATCATTCATATTTTGTACAAGTTTAAATAGAATTGGCGGACGATATGTTTTGTCATTATGATTTTGGCTTTGGTTTTTTCAGTGTAGTTTAATAATCTTTCATATTATAGTCTGTCTTTCTCACTATTTGAATGGAGTTCTAATATGTGTTTGAATTTTTTTGGCTTGTTACAGAAGTATGGAAAGATAGATGTTGTTGTGTCCAATGCTGCTGCAAATCCTTCTGTTGATTCCATTCTGCAAACCCAAGATTCGGTCCTTGACAAGTTATGGGAGATAAATGTCAAAGCCACTATACTTCTTCTGAAGGTAATTAAGCTGTGAAAATGGCTTTAACAAATAAAAGAAAAGAAATAATCCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTTCAGTGTTTTCCCTTTCTTCCATCTTTGTGTAGTGTGTTGATGTAGTAAAATGGTGTCTGATAATTATACACAGGATGCAGCTCCATACTTGCCGAAGGGTTCTTCTGTTGTTATCATTTCATCGATCGCTGGTTATCACCCACCAGCTAGTATGGCTATGTATGGAGTAACCAAAACAGCCCTTCTTGGCCTTACCAAAGTCGGTACTTGCCTTCCAATTGTTCCTTCAATATGCCATATGAATTGTTACTGTTTTTTTTTTTTTGTTATATCTGATAATTATTATGTAAATATAATGTGTAGGCCCTGGCTGCTGAGATGGCCCCTAAAACTCGTGTAAACTGTGTTGCTCCTGGTTTTGTACCAACTAATTTTGCTTCATTCATCACCAGTAATTCTGCTATGGTGAGTATCTTTTTAACCAAATAGGTTTTTCCTCTTTCCTCGAATCTCCTGTGTTGTGTATCATTTGCTATATAACACCACTGACACTTTAGATTGAAAGCGTGTTTGAGTGTCTGATACATGTCAATGTTCGAGACAGACACATATATGATTGCATACACTCACTTTTATTTTTTCAAATCATTATCTTTGTCTACGTGTTGGTGTCAATATTGTGTCCAGTATCAGTGCTTCATATATCATTTGTGTCTGAATGGATTTTGTGGCTATATTATTGTAGAGAGAAGAGCTTGAAGCAAAGACATTACTTGGAAGACTTGGTACAACCGAAGACATGGGTGCTGCTACAGCTTTTTTGGCATCTGATGATGCGTCATATATAACAGGAGAAACTATAGTAGTTTCCGGCGGAATGCCATCGAGACTGTAG
Protein sequence

>MS.gene042142.t1

MEIPKRFKGKVAIVTASTQGIGFTIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNALQRKDLIDKTVQKYGKIDVVVSNAAANPSVDSILQTQDSVLDKLWEINVKATILLLKDAAPYLPKGSSVVIISSIAGYHPPASMAMYGVTKTALLGLTKALAAEMAPKTRVNCVAPGFVPTNFASFITSNSAMREELEAKTLLGRLGTTEDMGAATAFLASDDASYITGETIVVSGGMPSRL