AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62187

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62187.t1 MTR_3g068155 96.364 275 10 0 1 275 1 275 0.0 549
MS.gene62187.t1 MTR_3g068175 78.309 272 59 0 4 275 2 273 3.37e-158 441
MS.gene62187.t1 MTR_3g068175 77.174 276 59 1 4 275 2 277 1.38e-155 434
MS.gene62187.t1 MTR_3g068085 77.043 257 59 0 19 275 15 271 3.70e-151 423
MS.gene62187.t1 MTR_3g068070 75.385 260 64 0 9 268 5 264 6.48e-149 417
MS.gene62187.t1 MTR_3g068065 73.047 256 69 0 19 274 17 272 3.59e-142 400
MS.gene62187.t1 MTR_4g064883 64.591 257 91 0 15 271 10 266 1.45e-129 368
MS.gene62187.t1 MTR_4g064887 61.390 259 100 0 7 265 3 261 8.32e-121 346
MS.gene62187.t1 MTR_7g063320 57.795 263 107 1 7 265 3 265 1.40e-109 318
MS.gene62187.t1 MTR_7g063390 58.462 260 104 1 10 265 7 266 5.07e-106 308
MS.gene62187.t1 MTR_7g063270 56.977 258 108 1 10 264 7 264 9.16e-105 305
MS.gene62187.t1 MTR_7g063330 56.107 262 112 1 6 264 2 263 1.23e-104 305
MS.gene62187.t1 MTR_7g063360 57.308 260 107 1 10 265 7 266 2.54e-103 301
MS.gene62187.t1 MTR_7g063260 55.598 259 111 1 10 264 7 265 3.10e-101 296
MS.gene62187.t1 MTR_4g064883 66.162 198 67 0 15 212 10 207 1.06e-96 283
MS.gene62187.t1 MTR_4g064887 60.396 202 80 0 7 208 3 204 6.30e-90 266
MS.gene62187.t1 MTR_7g063270 48.450 258 81 4 10 264 7 215 4.53e-78 236
MS.gene62187.t1 MTR_4g132850 32.377 244 160 4 21 263 9 248 7.24e-31 115
MS.gene62187.t1 MTR_3g085740 32.114 246 156 5 25 265 81 320 4.28e-30 115
MS.gene62187.t1 MTR_7g071680 32.847 274 148 7 19 264 29 294 7.57e-29 111
MS.gene62187.t1 MTR_7g094510 30.435 253 162 7 19 262 6 253 6.23e-26 102
MS.gene62187.t1 MTR_7g094520 31.154 260 161 8 15 263 7 259 1.05e-25 102
MS.gene62187.t1 MTR_4g052350 32.000 250 163 6 19 265 14 259 4.59e-25 100
MS.gene62187.t1 MTR_1196s0010 31.818 242 154 5 24 262 279 512 1.87e-24 102
MS.gene62187.t1 MTR_4g052320 29.600 250 170 5 19 265 8 254 1.75e-22 94.0
MS.gene62187.t1 MTR_4g058810 27.203 261 177 9 18 268 10 267 1.82e-22 94.0
MS.gene62187.t1 MTR_4g058840 28.077 260 174 9 19 268 11 267 6.55e-22 92.4
MS.gene62187.t1 MTR_4g058820 28.077 260 174 9 19 268 11 267 6.55e-22 92.4
MS.gene62187.t1 MTR_4g052300 29.200 250 170 6 19 265 8 253 6.58e-22 92.4
MS.gene62187.t1 MTR_7g107670 28.731 268 173 8 10 266 26 286 2.36e-21 91.7
MS.gene62187.t1 MTR_7g083870 31.047 277 165 9 6 264 19 287 7.18e-21 90.1
MS.gene62187.t1 MTR_4g078630 29.344 259 164 8 19 264 19 271 7.93e-21 89.7
MS.gene62187.t1 MTR_4g052340 28.030 264 166 8 19 267 14 268 8.79e-21 89.4
MS.gene62187.t1 MTR_8g442750 29.545 264 155 8 19 263 14 265 2.53e-20 88.6
MS.gene62187.t1 MTR_5g098650 80.392 51 10 0 225 275 124 174 7.71e-20 84.7
MS.gene62187.t1 MTR_3g020670 31.136 273 169 11 5 264 4 270 1.44e-18 83.6
MS.gene62187.t1 MTR_4g131740 28.794 257 171 6 18 265 39 292 2.06e-18 83.2
MS.gene62187.t1 MTR_1g068955 29.070 258 158 9 19 261 14 261 2.72e-17 80.1
MS.gene62187.t1 MTR_6g023990 28.736 261 174 8 11 263 6 262 2.92e-17 79.7
MS.gene62187.t1 MTR_6g023590 29.249 253 167 8 19 263 13 261 6.13e-16 75.9
MS.gene62187.t1 MTR_7g110130 28.295 258 174 8 16 266 3 256 8.20e-16 75.5
MS.gene62187.t1 MTR_1g082760 26.357 258 177 7 19 267 40 293 9.91e-16 75.9
MS.gene62187.t1 MTR_3g068075 52.239 67 31 1 127 192 1 67 1.81e-15 70.1
MS.gene62187.t1 MTR_7g105460 27.798 277 176 11 10 274 4 268 2.10e-15 74.7
MS.gene62187.t1 MTR_4g058830 29.747 158 105 5 116 268 57 213 2.49e-15 73.6
MS.gene62187.t1 MTR_1g051165 25.670 261 182 7 19 267 14 274 3.91e-15 73.9
MS.gene62187.t1 MTR_6g023950 28.854 253 168 8 19 263 13 261 1.46e-14 72.0
MS.gene62187.t1 MTR_2g090165 28.794 257 173 9 16 266 3 255 1.73e-14 72.0
MS.gene62187.t1 MTR_1579s0020 36.364 88 55 1 185 272 1 87 1.91e-14 67.8
MS.gene62187.t1 MTR_7g105580 26.210 248 159 6 19 262 8 235 7.66e-14 70.1
MS.gene62187.t1 MTR_7g105590 27.979 193 130 6 14 203 5 191 1.93e-13 67.8
MS.gene62187.t1 MTR_6g023600 29.249 253 167 8 19 263 13 261 2.78e-13 68.6
MS.gene62187.t1 MTR_8g089575 28.505 214 142 6 21 227 47 256 8.04e-13 67.8
MS.gene62187.t1 MTR_7g110140 27.099 262 181 8 16 271 3 260 9.41e-12 64.3
MS.gene62187.t1 MTR_8g044240 27.419 186 124 5 19 196 69 251 1.82e-11 63.9
MS.gene62187.t1 MTR_3g113870 26.667 180 126 4 32 209 34 209 6.40e-11 61.2
MS.gene62187.t1 MTR_7g105570 27.419 186 120 7 98 274 46 225 7.87e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62187.t1 AT5G06060 65.637 259 89 0 15 273 5 263 1.32e-132 376
MS.gene62187.t1 AT2G29260 61.719 256 98 0 15 270 64 319 3.29e-120 347
MS.gene62187.t1 AT2G29290 62.016 258 96 1 15 270 3 260 1.48e-118 340
MS.gene62187.t1 AT1G07440 60.853 258 98 2 15 270 8 264 5.90e-118 339
MS.gene62187.t1 AT1G07450 62.205 254 95 1 15 268 4 256 2.79e-117 337
MS.gene62187.t1 AT2G29150 59.848 264 103 2 9 270 6 268 1.71e-115 333
MS.gene62187.t1 AT2G29360 59.470 264 105 1 9 270 6 269 2.64e-114 330
MS.gene62187.t1 AT2G29350 61.265 253 97 1 16 268 12 263 9.19e-113 326
MS.gene62187.t1 AT2G29340 56.923 260 110 1 15 272 3 262 3.50e-111 322
MS.gene62187.t1 AT2G29340 57.364 258 108 1 15 270 3 260 2.21e-110 321
MS.gene62187.t1 AT2G29370 58.462 260 108 0 9 268 6 265 4.92e-110 319
MS.gene62187.t1 AT2G29330 58.527 258 105 1 15 270 3 260 5.55e-110 318
MS.gene62187.t1 AT2G29300 57.915 259 106 2 15 270 3 261 1.26e-108 315
MS.gene62187.t1 AT2G29310 57.364 258 108 1 15 270 3 260 7.45e-108 313
MS.gene62187.t1 AT2G30670 58.661 254 105 0 15 268 3 256 2.59e-107 311
MS.gene62187.t1 AT2G29320 58.175 263 95 4 17 270 11 267 3.47e-107 311
MS.gene62187.t1 AT2G29290 60.504 238 92 1 35 270 6 243 2.09e-105 306
MS.gene62187.t1 AT2G29300 57.312 253 107 1 15 266 3 255 6.26e-105 306
MS.gene62187.t1 AT2G29350 60.444 225 88 1 44 268 2 225 2.96e-97 285
MS.gene62187.t1 AT2G29320 56.735 245 91 4 35 270 11 249 4.73e-96 283
MS.gene62187.t1 AT2G29310 55.882 238 103 1 35 270 21 258 1.08e-94 280
MS.gene62187.t1 AT2G29350 63.212 193 71 0 16 208 12 204 6.20e-88 261
MS.gene62187.t1 AT2G29340 56.186 194 85 0 15 208 3 196 9.33e-81 242
MS.gene62187.t1 AT2G29340 56.186 194 85 0 15 208 3 196 9.33e-81 242
MS.gene62187.t1 AT2G29310 57.732 194 82 0 15 208 3 196 1.36e-79 239
MS.gene62187.t1 AT2G29320 57.592 191 80 1 17 206 11 201 1.14e-77 234
MS.gene62187.t1 AT1G07440 59.877 162 65 0 15 176 8 169 6.74e-71 216
MS.gene62187.t1 AT2G29310 55.747 174 77 0 35 208 21 194 1.95e-66 206
MS.gene62187.t1 AT2G29170 63.333 90 33 0 16 105 13 102 3.54e-38 130
MS.gene62187.t1 AT5G18210 33.721 258 154 8 18 263 7 259 3.72e-31 117
MS.gene62187.t1 AT4G13180 33.083 266 164 7 9 265 3 263 4.65e-30 114
MS.gene62187.t1 AT3G03980 32.103 271 163 8 8 262 3 268 6.89e-30 114
MS.gene62187.t1 AT4G05530 32.114 246 162 5 19 263 9 250 1.21e-29 112
MS.gene62187.t1 AT1G24360 30.224 268 176 5 3 265 58 319 3.45e-28 110
MS.gene62187.t1 AT5G18210 33.750 240 142 8 18 245 7 241 7.17e-27 105
MS.gene62187.t1 AT1G63380 29.344 259 171 8 19 267 19 275 1.71e-23 97.1
MS.gene62187.t1 AT1G63380 29.344 259 171 8 19 267 17 273 1.79e-23 97.1
MS.gene62187.t1 AT1G63380 29.344 259 171 8 19 267 15 271 2.08e-23 96.7
MS.gene62187.t1 AT3G04000 31.008 258 162 8 19 262 14 269 2.29e-23 96.7
MS.gene62187.t1 AT1G63380 29.344 259 171 8 19 267 22 278 2.82e-23 96.7
MS.gene62187.t1 AT3G46170 28.016 257 176 6 19 267 26 281 1.81e-22 94.4
MS.gene62187.t1 AT1G54870 30.859 256 164 7 19 265 82 333 2.22e-22 95.1
MS.gene62187.t1 AT1G54870 30.859 256 164 7 19 265 84 335 2.49e-22 94.7
MS.gene62187.t1 AT1G62610 27.132 258 178 7 19 267 15 271 3.13e-22 93.6
MS.gene62187.t1 AT1G62610 27.132 258 178 7 19 267 13 269 3.28e-22 93.6
MS.gene62187.t1 AT1G62610 27.132 258 178 7 19 267 19 275 3.38e-22 93.6
MS.gene62187.t1 AT1G62610 27.132 258 178 7 19 267 14 270 3.41e-22 93.6
MS.gene62187.t1 AT3G55310 28.682 258 173 8 19 267 17 272 5.76e-22 92.8
MS.gene62187.t1 AT3G55290 28.736 261 169 9 19 267 17 272 1.07e-21 92.0
MS.gene62187.t1 AT3G55290 28.736 261 169 9 19 267 18 273 1.18e-21 92.0
MS.gene62187.t1 AT3G51680 28.571 266 168 7 19 264 32 295 2.52e-21 91.7
MS.gene62187.t1 AT3G05260 29.020 255 169 6 19 265 37 287 2.66e-20 88.6
MS.gene62187.t1 AT2G17845 26.515 264 176 9 19 268 47 306 1.81e-19 86.7
MS.gene62187.t1 AT3G26760 27.099 262 172 6 19 266 36 292 2.80e-19 85.9
MS.gene62187.t1 AT3G12800 26.275 255 176 6 19 263 10 262 3.23e-19 85.9
MS.gene62187.t1 AT4G03140 26.172 256 175 7 19 264 78 329 8.15e-17 79.7
MS.gene62187.t1 AT1G52340 30.153 262 163 9 19 264 18 275 1.56e-16 78.2
MS.gene62187.t1 AT3G26770 27.692 260 171 6 19 266 41 295 4.28e-16 77.0
MS.gene62187.t1 AT3G42960 27.969 261 156 8 24 264 13 261 7.95e-15 73.2
MS.gene62187.t1 AT2G47130 25.869 259 169 7 19 265 6 253 1.86e-14 71.6
MS.gene62187.t1 AT3G06060 28.125 192 129 3 24 211 42 228 7.03e-14 70.9
MS.gene62187.t1 AT3G06060 28.125 192 129 3 24 211 59 245 8.04e-14 70.9
MS.gene62187.t1 AT5G04900 28.780 205 136 7 2 200 61 261 2.79e-13 69.3
MS.gene62187.t1 AT3G47350 28.037 214 143 6 18 226 43 250 6.12e-13 68.2
MS.gene62187.t1 AT3G29260 26.616 263 170 7 14 265 3 253 6.35e-13 67.4
MS.gene62187.t1 AT3G47350 28.037 214 143 6 18 226 43 250 8.45e-13 67.8
MS.gene62187.t1 AT2G47140 26.996 263 170 10 14 265 3 254 3.50e-12 65.5
MS.gene62187.t1 AT5G19200 26.471 204 141 3 25 224 41 239 3.71e-12 65.9
MS.gene62187.t1 AT1G24470 27.228 202 136 6 15 209 46 243 1.13e-11 64.3
MS.gene62187.t1 AT3G03330 25.628 199 139 4 10 201 32 228 1.96e-11 63.9
MS.gene62187.t1 AT1G49670 29.126 206 129 8 21 212 6 208 2.33e-11 64.3
MS.gene62187.t1 AT1G49670 29.126 206 129 8 21 212 6 208 2.38e-11 64.3

Find 63 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATAAGGCTCTCTCTTT+GGG 0.173020 3.2:-62828815 None:intergenic
GTTGAATAAGGCTCTCTCTT+TGG 0.264119 3.2:-62828816 None:intergenic
ACCGGTGGCACTCGTGGAAT+CGG 0.347184 3.2:+62828307 MS.gene62187:CDS
TGGAAGCCACTTGTTGAATA+AGG 0.356666 3.2:-62828828 None:intergenic
TATCCTCTTCTAAAAGAATC+TGG 0.356990 3.2:+62829746 MS.gene62187:CDS
ATGTTCTACAAGTGGGGTTC+TGG 0.364231 3.2:-62830038 None:intergenic
ACCCGAAGAGGTCTCCTCTT+TGG 0.381912 3.2:+62830675 MS.gene62187:CDS
GTGAATGATCTTGTTGCATT+TGG 0.387546 3.2:+62828679 MS.gene62187:CDS
GTGTTCATTTCATCTGTTGC+AGG 0.395569 3.2:+62829782 MS.gene62187:CDS
GGACAAGTTATTTGTGTTGA+TGG 0.402356 3.2:+62830736 MS.gene62187:CDS
ATCTCATGTAATTCTCATGC+TGG 0.418009 3.2:-62830785 None:intergenic
CTTCTAAAAGAATCTGGAAA+TGG 0.429287 3.2:+62829752 MS.gene62187:CDS
GTTGCAGGTGTGGTTAGCTT+AGG 0.435339 3.2:+62829797 MS.gene62187:CDS
CACCAAAGAGGAGACCTCTT+CGG 0.436189 3.2:-62830677 None:intergenic
TCAATAAGTGTTTACAAGAA+TGG 0.436812 3.2:+62828740 MS.gene62187:CDS
GATATGCAAGTTGGCACAAA+TGG 0.442938 3.2:-62829727 None:intergenic
TTTACAAGAATGGCAAAGTC+AGG 0.444926 3.2:+62828750 MS.gene62187:CDS
CAAGTGGCTTCCACTTTCAA+TGG 0.445054 3.2:+62828838 MS.gene62187:CDS
GGTTCGGCAATGCGCTTAAG+AGG 0.448812 3.2:-62830655 None:intergenic
AGAGGAGACCTCTTCGGGTT+CGG 0.459507 3.2:-62830671 None:intergenic
TGCAACAAGATCATTCACTA+TGG 0.461943 3.2:-62828674 None:intergenic
ACCAAAGAGGAGACCTCTTC+GGG 0.477426 3.2:-62830676 None:intergenic
GGAATGACAGCACTTGTAAC+CGG 0.485759 3.2:+62828289 MS.gene62187:CDS
CTACTGTCCACACTTGTTCA+AGG 0.488543 3.2:+62828704 MS.gene62187:CDS
TCAGCAGTGTACTCAATGGT+TGG 0.489827 3.2:-62829662 None:intergenic
ATTTCAAAATCAAAAGTTTG+TGG 0.490723 3.2:+62830612 MS.gene62187:CDS
GTTGTCTATTGCCCATTCAC+AGG 0.493489 3.2:-62829984 None:intergenic
AATGGGCAATAGACAACATA+AGG 0.496335 3.2:+62829990 MS.gene62187:CDS
GGTGTGGTTAGCTTAGGTAC+TGG 0.499150 3.2:+62829803 MS.gene62187:CDS
TTCTTCAGCAGTGTACTCAA+TGG 0.499815 3.2:-62829666 None:intergenic
GACAAGTTATTTGTGTTGAT+GGG 0.502183 3.2:+62830737 MS.gene62187:CDS
CCGGTGGCACTCGTGGAATC+GGG 0.504977 3.2:+62828308 MS.gene62187:CDS
GTTGAGCTTGCCATTGAAAG+TGG 0.515168 3.2:-62828848 None:intergenic
CATTTCATCTGTTGCAGGTG+TGG 0.515366 3.2:+62829787 MS.gene62187:CDS
CTTGTAACCGGTGGCACTCG+TGG 0.527392 3.2:+62828301 MS.gene62187:CDS
CCCGATTCCACGAGTGCCAC+CGG 0.529955 3.2:-62828308 None:intergenic
GGACAGAGATGGTCTCTCAC+TGG 0.538298 3.2:+62828268 MS.gene62187:CDS
TCTGTCTACGCAGCAAGTAA+AGG 0.541483 3.2:+62829827 MS.gene62187:CDS
CCTGCTGCATCTTACATCAC+TGG 0.543937 3.2:+62830715 MS.gene62187:CDS
AAATTACATGTTCTACAAGT+GGG 0.546415 3.2:-62830045 None:intergenic
TTAGAAGAGGATATGCAAGT+TGG 0.555015 3.2:-62829736 None:intergenic
AGTGGGGTTCTGGTTGCCCA+TGG 0.559899 3.2:-62830028 None:intergenic
GAGCAATTGTGTTGTACCAT+GGG 0.560513 3.2:+62830012 MS.gene62187:CDS
GAAACACATAGCAGCAGAGG+TGG 0.561832 3.2:+62828247 MS.gene62187:CDS
AGAGAGCCTTATTCAACAAG+TGG 0.562362 3.2:+62828822 MS.gene62187:CDS
AAAATTACATGTTCTACAAG+TGG 0.573526 3.2:-62830046 None:intergenic
TCTCATGTAATTCTCATGCT+GGG 0.575912 3.2:-62830784 None:intergenic
GGAGCAATTGTGTTGTACCA+TGG 0.576420 3.2:+62830011 MS.gene62187:CDS
GCGCATTGCCGAACCCGAAG+AGG 0.578494 3.2:+62830663 MS.gene62187:CDS
GCAGCAGAGGTGGACAGAGA+TGG 0.586161 3.2:+62828257 MS.gene62187:CDS
GTAGAAACACATAGCAGCAG+AGG 0.588040 3.2:+62828244 MS.gene62187:CDS
TGAATAAGGCTCTCTCTTTG+GGG 0.599329 3.2:-62828814 None:intergenic
CAAGTTATTTGTGTTGATGG+GGG 0.602087 3.2:+62830739 MS.gene62187:CDS
ATGCTTTAGGTAAATAACGT+GGG 0.610168 3.2:+62829623 MS.gene62187:intron
ATTCAGTCCTTGAACAAGTG+TGG 0.613741 3.2:-62828711 None:intergenic
TTACAAGAATGGCAAAGTCA+GGG 0.621457 3.2:+62828751 MS.gene62187:CDS
CCAGTGATGTAAGATGCAGC+AGG 0.631919 3.2:-62830715 None:intergenic
ACAAGTTATTTGTGTTGATG+GGG 0.632558 3.2:+62830738 MS.gene62187:CDS
AAGATGCAGCAGGTAAGCAA+AGG 0.634488 3.2:-62830705 None:intergenic
TATGCTTTAGGTAAATAACG+TGG 0.635045 3.2:+62829622 MS.gene62187:intron
AATTACATGTTCTACAAGTG+GGG 0.636533 3.2:-62830044 None:intergenic
GCAAAGGAAAGTCACCAAAG+AGG 0.638884 3.2:-62830689 None:intergenic
ATGACAGCACTTGTAACCGG+TGG 0.672686 3.2:+62828292 MS.gene62187:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAGGTAAGTT+AGG - chr3.2:62830079-62830098 None:intergenic 15.0%
!! AAAAAAAAAAAGGTAAGTTA+GGG - chr3.2:62830078-62830097 None:intergenic 15.0%
!! TATTATGTATCCATATTTAT+TGG - chr3.2:62830144-62830163 None:intergenic 15.0%
!!! AAAAGATAATGAAGTATTTT+TGG - chr3.2:62828426-62828445 None:intergenic 15.0%
!!! TATTTACATTTTTTCATTCA+TGG + chr3.2:62830451-62830470 MS.gene62187:intron 15.0%
!! AAAATACACATAAAACTCAA+AGG - chr3.2:62830220-62830239 None:intergenic 20.0%
!! ATTTATAACTCTTTCGTTAT+TGG - chr3.2:62829247-62829266 None:intergenic 20.0%
!! ATTTCAAAATCAAAAGTTTG+TGG + chr3.2:62830612-62830631 MS.gene62187:CDS 20.0%
!! GTTTCCTTCAAAAAAAAAAA+AGG - chr3.2:62830088-62830107 None:intergenic 20.0%
!! TAATCAGCTTACAAAAAATT+TGG + chr3.2:62829961-62829980 MS.gene62187:CDS 20.0%
!!! CTTACCTTTTTTTTTTTTGA+AGG + chr3.2:62830081-62830100 MS.gene62187:intron 20.0%
!!! TTTTTTGTTCAAACTAACAA+TGG + chr3.2:62830537-62830556 MS.gene62187:intron 20.0%
! AAAATTACATGTTCTACAAG+TGG - chr3.2:62830049-62830068 None:intergenic 25.0%
! AAATAATGAAGTAAGAGAGA+AGG - chr3.2:62828347-62828366 None:intergenic 25.0%
! AAATTACATGTTCTACAAGT+GGG - chr3.2:62830048-62830067 None:intergenic 25.0%
! AATAATGAAGTAAGAGAGAA+GGG - chr3.2:62828346-62828365 None:intergenic 25.0%
! TAAAACAGTGACTATTTGTA+AGG - chr3.2:62829291-62829310 None:intergenic 25.0%
! TCAATAAGTGTTTACAAGAA+TGG + chr3.2:62828740-62828759 MS.gene62187:CDS 25.0%
! TCTGCTTATGATTGATTATA+TGG + chr3.2:62830363-62830382 MS.gene62187:intron 25.0%
! TTGAAGGAAACTTACTTATT+TGG + chr3.2:62830097-62830116 MS.gene62187:intron 25.0%
! TTTGCATGAATTTATGCTTT+AGG + chr3.2:62829610-62829629 MS.gene62187:intron 25.0%
!! ACTAGACATATCAAAAGTTT+TGG - chr3.2:62829470-62829489 None:intergenic 25.0%
!! ATGTTATCTTTTCTCAATAG+TGG - chr3.2:62829080-62829099 None:intergenic 25.0%
!! ATTCATTTGACACTTTGTTT+AGG + chr3.2:62828647-62828666 MS.gene62187:intron 25.0%
!! CAATGTTGACTGTTTATTTA+TGG + chr3.2:62828925-62828944 MS.gene62187:intron 25.0%
!! TAAACAAAGTGTCAAATGAA+TGG - chr3.2:62828648-62828667 None:intergenic 25.0%
!!! CATATTTATTGGTTCTATGT+GGG - chr3.2:62830133-62830152 None:intergenic 25.0%
!!! CGTTTAAATGTTTTTACACA+CGG + chr3.2:62828471-62828490 MS.gene62187:intron 25.0%
!!! GACACTAATTTTAAAACGAA+GGG - chr3.2:62828452-62828471 None:intergenic 25.0%
AAAAAATTTGGCCTGTGAAT+GGG + chr3.2:62829973-62829992 MS.gene62187:CDS 30.0%
AACTGAAGTTTGAATGACAT+AGG + chr3.2:62828968-62828987 MS.gene62187:intron 30.0%
AATTACATGTTCTACAAGTG+GGG - chr3.2:62830047-62830066 None:intergenic 30.0%
AATTGCAGCTGAAAATTCAA+TGG - chr3.2:62829942-62829961 None:intergenic 30.0%
ACTGAAGTTTGAATGACATA+GGG + chr3.2:62828969-62828988 MS.gene62187:intron 30.0%
AGTAAAGCTCTTTAGTAACA+CGG - chr3.2:62828554-62828573 None:intergenic 30.0%
ATAATGAAGTAAGAGAGAAG+GGG - chr3.2:62828345-62828364 None:intergenic 30.0%
ATTGTGCCAAACGTATAAAA+GGG + chr3.2:62828887-62828906 MS.gene62187:intron 30.0%
CAACAAAAATCAGGAAGAAA+CGG - chr3.2:62829405-62829424 None:intergenic 30.0%
CCACATAGAACCAATAAATA+TGG + chr3.2:62830131-62830150 MS.gene62187:intron 30.0%
CTACATATGAATAATGATGC+AGG - chr3.2:62828386-62828405 None:intergenic 30.0%
GTTACATTCGAACAATTGTT+AGG + chr3.2:62828522-62828541 MS.gene62187:intron 30.0%
TAGATCCAAATGATGAATTC+AGG - chr3.2:62829431-62829450 None:intergenic 30.0%
TCTCAATTATGTTGTAGTGT+TGG - chr3.2:62828498-62828517 None:intergenic 30.0%
TGAGAAAAGAGTGATAACAA+TGG + chr3.2:62829035-62829054 MS.gene62187:intron 30.0%
TGATTCCTGAATTCATCATT+TGG + chr3.2:62829423-62829442 MS.gene62187:intron 30.0%
TTCAGGAATCAACAAAAATC+AGG - chr3.2:62829414-62829433 None:intergenic 30.0%
! ACAAGTTATTTGTGTTGATG+GGG + chr3.2:62830738-62830757 MS.gene62187:CDS 30.0%
! ATGCTTTAGGTAAATAACGT+GGG + chr3.2:62829623-62829642 MS.gene62187:intron 30.0%
! ATTCCTATCTTCAAGTTCAA+TGG + chr3.2:62830486-62830505 MS.gene62187:intron 30.0%
! CTTCTAAAAGAATCTGGAAA+TGG + chr3.2:62829752-62829771 MS.gene62187:CDS 30.0%
! GAAAGTTAGTCTATTTGTTC+CGG + chr3.2:62829192-62829211 MS.gene62187:intron 30.0%
! GACAAGTTATTTGTGTTGAT+GGG + chr3.2:62830737-62830756 MS.gene62187:CDS 30.0%
! GTAAGTACATTGTTTAGAGT+CGG + chr3.2:62829488-62829507 MS.gene62187:intron 30.0%
! TATCCTCTTCTAAAAGAATC+TGG + chr3.2:62829746-62829765 MS.gene62187:CDS 30.0%
! TATGCTTTAGGTAAATAACG+TGG + chr3.2:62829622-62829641 MS.gene62187:intron 30.0%
!! CCATATTTATTGGTTCTATG+TGG - chr3.2:62830134-62830153 None:intergenic 30.0%
!! TTTCCAGATTCTTTTAGAAG+AGG - chr3.2:62829752-62829771 None:intergenic 30.0%
!!! CGACACTAATTTTAAAACGA+AGG - chr3.2:62828453-62828472 None:intergenic 30.0%
AAGTTTGAATGACATAGGGT+TGG + chr3.2:62828973-62828992 MS.gene62187:intron 35.0%
AATGGGCAATAGACAACATA+AGG + chr3.2:62829990-62830009 MS.gene62187:CDS 35.0%
CAAAAAATTTGGCCTGTGAA+TGG + chr3.2:62829972-62829991 MS.gene62187:CDS 35.0%
CATTGTGCCAAACGTATAAA+AGG + chr3.2:62828886-62828905 MS.gene62187:intron 35.0%
GAGTGATAACAATGGTAAAG+TGG + chr3.2:62829043-62829062 MS.gene62187:intron 35.0%
GGACAAGTTATTTGTGTTGA+TGG + chr3.2:62830736-62830755 MS.gene62187:CDS 35.0%
GTGAATGATCTTGTTGCATT+TGG + chr3.2:62828679-62828698 MS.gene62187:CDS 35.0%
TCATAAGCAGACATTACAGA+TGG - chr3.2:62830354-62830373 None:intergenic 35.0%
TCGTTATTGGACTTGATGTT+TGG - chr3.2:62829234-62829253 None:intergenic 35.0%
TGCAACAAGATCATTCACTA+TGG - chr3.2:62828677-62828696 None:intergenic 35.0%
TGGATAATTTCGTAGTTGAC+CGG - chr3.2:62829214-62829233 None:intergenic 35.0%
TGTCCATTGAACTTGAAGAT+AGG - chr3.2:62830492-62830511 None:intergenic 35.0%
TTACAAGAATGGCAAAGTCA+GGG + chr3.2:62828751-62828770 MS.gene62187:CDS 35.0%
TTAGAAGAGGATATGCAAGT+TGG - chr3.2:62829739-62829758 None:intergenic 35.0%
TTGAATAAGGCTCTCTCTTT+GGG - chr3.2:62828818-62828837 None:intergenic 35.0%
TTTACAAGAATGGCAAAGTC+AGG + chr3.2:62828750-62828769 MS.gene62187:CDS 35.0%
! CAAAGTGTCAAATGAATGGA+TGG - chr3.2:62828644-62828663 None:intergenic 35.0%
! CAAGTTATTTGTGTTGATGG+GGG + chr3.2:62830739-62830758 MS.gene62187:CDS 35.0%
! CTTAGACCCTTTTATACGTT+TGG - chr3.2:62828896-62828915 None:intergenic 35.0%
!! TGGACTAGCAGTAAATTGTT+AGG + chr3.2:62830383-62830402 MS.gene62187:intron 35.0%
AGTCGGATGTCATTCAACAA+TGG + chr3.2:62829505-62829524 MS.gene62187:intron 40.0%
ATTCAGTCCTTGAACAAGTG+TGG - chr3.2:62828714-62828733 None:intergenic 40.0%
GAGCAATTGTGTTGTACCAT+GGG + chr3.2:62830012-62830031 MS.gene62187:CDS 40.0%
GGAGATAGTAAATGCTTGAG+TGG + chr3.2:62828994-62829013 MS.gene62187:intron 40.0%
GTCGGATGTCATTCAACAAT+GGG + chr3.2:62829506-62829525 MS.gene62187:intron 40.0%
GTGTTCATTTCATCTGTTGC+AGG + chr3.2:62829782-62829801 MS.gene62187:CDS 40.0%
GTTGAATAAGGCTCTCTCTT+TGG - chr3.2:62828819-62828838 None:intergenic 40.0%
TGAATAAGGCTCTCTCTTTG+GGG - chr3.2:62828817-62828836 None:intergenic 40.0%
TTCTTCAGCAGTGTACTCAA+TGG - chr3.2:62829669-62829688 None:intergenic 40.0%
! ATGGCAAAGTCAGGGATTTT+CGG + chr3.2:62828759-62828778 MS.gene62187:CDS 40.0%
! GATATGCAAGTTGGCACAAA+TGG - chr3.2:62829730-62829749 None:intergenic 40.0%
! TCGATCGATGTTTAGAGTTG+AGG + chr3.2:62829368-62829387 MS.gene62187:intron 40.0%
! TGGAAGCCACTTGTTGAATA+AGG - chr3.2:62828831-62828850 None:intergenic 40.0%
!! AGAGAGCCTTATTCAACAAG+TGG + chr3.2:62828822-62828841 MS.gene62187:CDS 40.0%
AAGATGCAGCAGGTAAGCAA+AGG - chr3.2:62830708-62830727 None:intergenic 45.0%
ATGTTCTACAAGTGGGGTTC+TGG - chr3.2:62830041-62830060 None:intergenic 45.0%
CAAGTGGCTTCCACTTTCAA+TGG + chr3.2:62828838-62828857 MS.gene62187:CDS 45.0%
CATTTCATCTGTTGCAGGTG+TGG + chr3.2:62829787-62829806 MS.gene62187:CDS 45.0%
CTACTGTCCACACTTGTTCA+AGG + chr3.2:62828704-62828723 MS.gene62187:CDS 45.0%
GATGGGGGATTAACTGTGTT+TGG + chr3.2:62830754-62830773 MS.gene62187:CDS 45.0%
GCAAAGGAAAGTCACCAAAG+AGG - chr3.2:62830692-62830711 None:intergenic 45.0%
GGAATGACAGCACTTGTAAC+CGG + chr3.2:62828289-62828308 MS.gene62187:CDS 45.0%
GGAGCAATTGTGTTGTACCA+TGG + chr3.2:62830011-62830030 MS.gene62187:CDS 45.0%
GTAGAAACACATAGCAGCAG+AGG + chr3.2:62828244-62828263 MS.gene62187:CDS 45.0%
GTTGAGCTTGCCATTGAAAG+TGG - chr3.2:62828851-62828870 None:intergenic 45.0%
GTTGTCTATTGCCCATTCAC+AGG - chr3.2:62829987-62830006 None:intergenic 45.0%
TCAGCAGTGTACTCAATGGT+TGG - chr3.2:62829665-62829684 None:intergenic 45.0%
TCTGTCTACGCAGCAAGTAA+AGG + chr3.2:62829827-62829846 MS.gene62187:CDS 45.0%
! AGTCAGGGATTTTCGGTTAC+TGG + chr3.2:62828766-62828785 MS.gene62187:CDS 45.0%
! GGGATTTTCGGTTACTGGAT+CGG + chr3.2:62828771-62828790 MS.gene62187:CDS 45.0%
!! CAAAAATTAAAAAAAAATAT+TGG - chr3.2:62830587-62830606 None:intergenic 5.0%
ACCAAAGAGGAGACCTCTTC+GGG - chr3.2:62830679-62830698 None:intergenic 50.0%
ATGACAGCACTTGTAACCGG+TGG + chr3.2:62828292-62828311 MS.gene62187:CDS 50.0%
CACCAAAGAGGAGACCTCTT+CGG - chr3.2:62830680-62830699 None:intergenic 50.0%
CCAGTGATGTAAGATGCAGC+AGG - chr3.2:62830718-62830737 None:intergenic 50.0%
CCTGCTGCATCTTACATCAC+TGG + chr3.2:62830715-62830734 MS.gene62187:CDS 50.0%
GAAACACATAGCAGCAGAGG+TGG + chr3.2:62828247-62828266 MS.gene62187:CDS 50.0%
!! GGTGTGGTTAGCTTAGGTAC+TGG + chr3.2:62829803-62829822 MS.gene62187:CDS 50.0%
!! GTTGCAGGTGTGGTTAGCTT+AGG + chr3.2:62829797-62829816 MS.gene62187:CDS 50.0%
ACCCGAAGAGGTCTCCTCTT+TGG + chr3.2:62830675-62830694 MS.gene62187:CDS 55.0%
GGACAGAGATGGTCTCTCAC+TGG + chr3.2:62828268-62828287 MS.gene62187:CDS 55.0%
GGTTCGGCAATGCGCTTAAG+AGG - chr3.2:62830658-62830677 None:intergenic 55.0%
! AGAGGAGACCTCTTCGGGTT+CGG - chr3.2:62830674-62830693 None:intergenic 55.0%
ACCGGTGGCACTCGTGGAAT+CGG + chr3.2:62828307-62828326 MS.gene62187:CDS 60.0%
CTTGTAACCGGTGGCACTCG+TGG + chr3.2:62828301-62828320 MS.gene62187:CDS 60.0%
GCAGCAGAGGTGGACAGAGA+TGG + chr3.2:62828257-62828276 MS.gene62187:CDS 60.0%
! AGTGGGGTTCTGGTTGCCCA+TGG - chr3.2:62830031-62830050 None:intergenic 60.0%
CCCGATTCCACGAGTGCCAC+CGG - chr3.2:62828311-62828330 None:intergenic 65.0%
CCGGTGGCACTCGTGGAATC+GGG + chr3.2:62828308-62828327 MS.gene62187:CDS 65.0%
GCGCATTGCCGAACCCGAAG+AGG + chr3.2:62830663-62830682 MS.gene62187:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 62828229 62830804 62828229 ID=MS.gene62187
chr3.2 mRNA 62828229 62830804 62828229 ID=MS.gene62187.t1;Parent=MS.gene62187
chr3.2 exon 62828229 62828329 62828229 ID=MS.gene62187.t1.exon1;Parent=MS.gene62187.t1
chr3.2 CDS 62828229 62828329 62828229 ID=cds.MS.gene62187.t1;Parent=MS.gene62187.t1
chr3.2 exon 62828669 62828876 62828669 ID=MS.gene62187.t1.exon2;Parent=MS.gene62187.t1
chr3.2 CDS 62828669 62828876 62828669 ID=cds.MS.gene62187.t1;Parent=MS.gene62187.t1
chr3.2 exon 62829632 62829848 62829632 ID=MS.gene62187.t1.exon3;Parent=MS.gene62187.t1
chr3.2 CDS 62829632 62829848 62829632 ID=cds.MS.gene62187.t1;Parent=MS.gene62187.t1
chr3.2 exon 62829954 62830060 62829954 ID=MS.gene62187.t1.exon4;Parent=MS.gene62187.t1
chr3.2 CDS 62829954 62830060 62829954 ID=cds.MS.gene62187.t1;Parent=MS.gene62187.t1
chr3.2 exon 62830610 62830804 62830610 ID=MS.gene62187.t1.exon5;Parent=MS.gene62187.t1
chr3.2 CDS 62830610 62830804 62830610 ID=cds.MS.gene62187.t1;Parent=MS.gene62187.t1
Gene Sequence

>MS.gene62187

ATGGCAGCAGCAGCAGTAGAAACACATAGCAGCAGAGGTGGACAGAGATGGTCTCTCACTGGAATGACAGCACTTGTAACCGGTGGCACTCGTGGAATCGGGTTTTTATCACTCCCCTTCTCTCTTACTTCATTATTTATCTTATCTTCAACATCCTGCATCATTATTCATATGTAGTCTTTATTTTGATCTAGCCAAAAATACTTCATTATCTTTTACTCCCTTCGTTTTAAAATTAGTGTCGTTTAAATGTTTTTACACACGGACCAACACTACAACATAATTGAGATCTAGTTACATTCGAACAATTGTTAGGTAAAATCCGTGTTACTAAAGAGCTTTACTAACATTTTATAGTATTATATATCAGTAAGTTATTCAGATGACACTTTTATTAAGAATAGATTTTAATCCATCCATTCATTTGACACTTTGTTTAGGCATGCCATAGTGAATGATCTTGTTGCATTTGGTGCTACTGTCCACACTTGTTCAAGGACTGAATCAGAGCTCAATAAGTGTTTACAAGAATGGCAAAGTCAGGGATTTTCGGTTACTGGATCGGTCTGTGATGTAAGCTCTCGACCCCAAAGAGAGAGCCTTATTCAACAAGTGGCTTCCACTTTCAATGGCAAGCTCAACATCTTTGTAAGTACTCATTGTGCCAAACGTATAAAAGGGTCTAAGAAAAACATACAATGTTGACTGTTTATTTATGGATCTATGCAGAAAACTATTGAACTGAAGTTTGAATGACATAGGGTTGGAGATAGTAAATGCTTGAGTGGTAGTAGTAGTAGTAGTATTGAGAAAAGAGTGATAACAATGGTAAAGTGGATATGTCTGTGCCACTATTGAGAAAAGATAACATCTTATAAGAGTTTATGAAAAGTAATATTTTTTATCTTACAAGTTAATTTTGTAAGAATAAGTTAGACTCGTTATAAAAATCTAATATAGTATGAAAGTTAGTCTATTTGTTCCGGTCAACTACGAAATTATCCAAACATCAAGTCCAATAACGAAAGAGTTATAAATACTAAACAATGACATCTCTCGCCTTACAAATAGTCACTGTTTTACTTTAAATACTAAACAATGTATCTGCGCTTAAGATTTTTGTATAGAAATTATGCTAGTCGATCGATGTTTAGAGTTGAGGTCAACAACAAACCGTTTCTTCCTGATTTTTGTTGATTCCTGAATTCATCATTTGGATCTAGTTATTTAATATTTCTCCAAAACTTTTGATATGTCTAGTAAGTACATTGTTTAGAGTCGGATGTCATTCAACAATGGGTGCAGTCTGCAAATGATGCTTATGCGATGAGATAAATTTACAGCAGAAATTAATGAATCACTTTGCTATGAATCATACATATTTGCATGAATTTATGCTTTAGGTAAATAACGTGGGATCAAACTTTAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCAGAGCTAATGACAATTAATTTAGACTCATCATTCCATTTGTGCCAACTTGCATATCCTCTTCTAAAAGAATCTGGAAATGGTAGCATTGTGTTCATTTCATCTGTTGCAGGTGTGGTTAGCTTAGGTACTGGATCTGTCTACGCAGCAAGTAAAGGTGAGTGCTACACTCATTAGTTCTTTTTTTTTTTTTTTCATGTAAATGTGATTAATAAAATGTTACGATTAAACGACAATTGTGTTTCATCCATTGAATTTTCAGCTGCAATTAATCAGCTTACAAAAAATTTGGCCTGTGAATGGGCAATAGACAACATAAGGAGCAATTGTGTTGTACCATGGGCAACCAGAACCCCACTTGTAGAACATGTAATTTTCTTGCTCCCTAACTTACCTTTTTTTTTTTTGAAGGAAACTTACTTATTTGGTTGATTGAATCCCACATAGAACCAATAAATATGGATACATAATAATACTCAAAAAAATTATATTTAGACGTCAAAATTTGATGTCAAATACGAGTGTCCTTTGAGTTTTATGTGTATTTTTAAAATGTGTGTAAGTTGTAGAAAATAAAAAAGAAATAGAGATAAACATATACGATGTCGCATATAGTAACTGTATTTTGATGTTCAAATATAATTTCTTTAGTATTATTACCATCTGTAATGTCTGCTTATGATTGATTATATGGACTAGCAGTAAATTGTTAGGATAGCATAAATTTAAATATAGTGTTTTTGAATTGATTGTGTCTAATATTTACATTTTTTCATTCATGGAAATACATGACTATTCCTATCTTCAAGTTCAATGGACATTCTTCATACTCTATCAAGCAAATCTTTTTTGTTCAAACTAACAATGGATGTCTCTTGTCTATGTGTTTGATCCAATATTTTTTTTTAATTTTTGTAGTTATTTCAAAATCAAAAGTTTGTGGATGATATTATGTCTCGAACTCCTCTTAAGCGCATTGCCGAACCCGAAGAGGTCTCCTCTTTGGTGACTTTCCTTTGCTTACCTGCTGCATCTTACATCACTGGACAAGTTATTTGTGTTGATGGGGGATTAACTGTGTTTGGATTTCAACCCAGCATGAGAATTACATGA
Protein sequence

>MS.gene62187.t1

MAAAAVETHSSRGGQRWSLTGMTALVTGGTRGIGHAIVNDLVAFGATVHTCSRTESELNKCLQEWQSQGFSVTGSVCDVSSRPQRESLIQQVASTFNGKLNIFVNNVGSNFRKPTIEYTAEEYSELMTINLDSSFHLCQLAYPLLKESGNGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAIDNIRSNCVVPWATRTPLVEHLFQNQKFVDDIMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGFQPSMRIT