AlfalfaGEDB | MS.gene008153

M. sativa cultivar XinJiangDaYe / MS.gene008153

KEGG: K08081
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF13561.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008153.t1	XP_013460715.1	96.3	272	10	0	2	273	4	275	7.80E-145	523.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008153.t1	Q9LHT0	65.6	259	89	0	13	271	5	263	4.7e-98	359.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008153.t1	A0A072UY64	96.3	272	10	0	2	273	4	275	5.6e-145	523.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003925	MS.gene008153	PPI
MS.gene003926	MS.gene008153	PPI
MS.gene006999	MS.gene008153	PPI
MS.gene007006	MS.gene008153	PPI
MS.gene007678	MS.gene008153	PPI
MS.gene008153	MS.gene028938	PPI
MS.gene008153	MS.gene003992	PPI
MS.gene008153	MS.gene30551	PPI
MS.gene008153	MS.gene055846	PPI
MS.gene008153	MS.gene024269	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008153.t1	MTR_3g068155	96.324	272	10	0	2	273	4	275	0.0	543
MS.gene008153.t1	MTR_3g068175	78.388	273	59	0	1	273	1	273	7.41e-159	442
MS.gene008153.t1	MTR_3g068175	77.256	277	59	1	1	273	1	277	1.68e-156	437
MS.gene008153.t1	MTR_3g068085	77.043	257	59	0	17	273	15	271	6.67e-151	422
MS.gene008153.t1	MTR_3g068070	75.385	260	64	0	7	266	5	264	7.06e-149	417
MS.gene008153.t1	MTR_3g068065	71.324	272	78	0	1	272	1	272	1.59e-142	401
MS.gene008153.t1	MTR_4g064883	64.591	257	91	0	13	269	10	266	2.30e-129	368
MS.gene008153.t1	MTR_4g064887	61.390	259	100	0	5	263	3	261	1.35e-120	345
MS.gene008153.t1	MTR_7g063320	57.795	263	107	1	5	263	3	265	1.17e-109	318
MS.gene008153.t1	MTR_7g063390	58.462	260	104	1	8	263	7	266	5.42e-106	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008153.t1	AT5G06060	65.637	259	89	0	13	271	5	263	1.57e-132	375
MS.gene008153.t1	AT2G29260	61.719	256	98	0	13	268	64	319	2.98e-120	347
MS.gene008153.t1	AT2G29290	62.016	258	96	1	13	268	3	260	1.70e-118	340
MS.gene008153.t1	AT1G07440	60.853	258	98	2	13	268	8	264	8.19e-118	338
MS.gene008153.t1	AT1G07450	62.205	254	95	1	13	266	4	256	3.04e-117	337
MS.gene008153.t1	AT2G29150	59.848	264	103	2	7	268	6	268	2.76e-115	332
MS.gene008153.t1	AT2G29360	59.470	264	105	1	7	268	6	269	2.24e-114	330
MS.gene008153.t1	AT2G29350	61.265	253	97	1	14	266	12	263	1.08e-112	325
MS.gene008153.t1	AT2G29340	56.923	260	110	1	13	270	3	262	3.08e-111	322
MS.gene008153.t1	AT2G29340	57.364	258	108	1	13	268	3	260	2.10e-110	321

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Find 63 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACATGTTCTACAAG+TGG	0.573526	3.4:-69209669	None:intergenic
AAATTACATGTTCTACAAGT+GGG	0.546415	3.4:-69209668	None:intergenic
AAGATGCAGCAGGTAAGCAA+AGG	0.634488	3.4:-69210324	None:intergenic
AATGGGCAATAGACAACATA+AGG	0.496335	3.4:+69209613	MS.gene008153:CDS
AATTACATGTTCTACAAGTG+GGG	0.636533	3.4:-69209667	None:intergenic
ACAAGTTATTTGTGTTGATG+GGG	0.632558	3.4:+69210357	MS.gene008153:CDS
ACCAAAGAGGAGACCTCTTC+GGG	0.477426	3.4:-69210295	None:intergenic
ACCCGAAGAGGTCTCCTCTT+TGG	0.381912	3.4:+69210294	MS.gene008153:CDS
ACCGGTGGCACTCGTGGAAT+CGG	0.347184	3.4:+69207930	MS.gene008153:CDS
AGAGAGCCTTATTCAACAAG+TGG	0.562362	3.4:+69208445	MS.gene008153:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTTGGCCTGTGAAT+GGG	+	chr3.4:69209596-69209615	MS.gene008153:CDS	30.0%
AACTGAAGTTTGAATGACAT+AGG	+	chr3.4:69208591-69208610	MS.gene008153:intron	30.0%
AATTACATGTTCTACAAGTG+GGG	-	chr3.4:69209670-69209689	None:intergenic	30.0%
AATTGCAGCTGAAAATTCAA+TGG	-	chr3.4:69209565-69209584	None:intergenic	30.0%
ACTGAAGTTTGAATGACATA+GGG	+	chr3.4:69208592-69208611	MS.gene008153:intron	30.0%
AGTAAAGCTCTTTAGTAACA+CGG	-	chr3.4:69208177-69208196	None:intergenic	30.0%
ATAATGAAGTAAGAGAGAAG+GGG	-	chr3.4:69207968-69207987	None:intergenic	30.0%
ATTGTGCCAAACGTATAAAA+GGG	+	chr3.4:69208510-69208529	MS.gene008153:intron	30.0%
CAACAAAAATCAGGAAGAAA+CGG	-	chr3.4:69209031-69209050	None:intergenic	30.0%
CCACATAGAACCAATAAATA+TGG	+	chr3.4:69209754-69209773	MS.gene008153:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	69207858	69210423	69207858	ID=MS.gene008153
chr3.4	mRNA	69207858	69210423	69207858	ID=MS.gene008153.t1;Parent=MS.gene008153
chr3.4	exon	69207858	69207952	69207858	ID=MS.gene008153.t1.exon1;Parent=MS.gene008153.t1
chr3.4	CDS	69207858	69207952	69207858	ID=cds.MS.gene008153.t1;Parent=MS.gene008153.t1
chr3.4	exon	69208292	69208499	69208292	ID=MS.gene008153.t1.exon2;Parent=MS.gene008153.t1
chr3.4	CDS	69208292	69208499	69208292	ID=cds.MS.gene008153.t1;Parent=MS.gene008153.t1
chr3.4	exon	69209258	69209474	69209258	ID=MS.gene008153.t1.exon3;Parent=MS.gene008153.t1
chr3.4	CDS	69209258	69209474	69209258	ID=cds.MS.gene008153.t1;Parent=MS.gene008153.t1
chr3.4	exon	69209577	69209683	69209577	ID=MS.gene008153.t1.exon4;Parent=MS.gene008153.t1
chr3.4	CDS	69209577	69209683	69209577	ID=cds.MS.gene008153.t1;Parent=MS.gene008153.t1
chr3.4	exon	69210229	69210423	69210229	ID=MS.gene008153.t1.exon5;Parent=MS.gene008153.t1
chr3.4	CDS	69210229	69210423	69210229	ID=cds.MS.gene008153.t1;Parent=MS.gene008153.t1

Gene Sequence

>MS.gene008153

ATGGCAGCAGTAGAAACACATAGCAGCAGAGGTGGACAGAGATGGTCTCTCACTGGAATGACAGCACTTGTAACCGGTGGCACTCGTGGAATCGGGTTTTTATCACTCCCCTTCTCTCTTACTTCATTATTTATCTTATCTTCAACATCCTGCATCATTATTCATATGTAGTCTTTATTTTGATCTAGCCAAAAATACTTCATTATCTTTTACTCCTTTTTTTTTAAAATTAGTGTCGTTTAAATGTTTTTACACACGGACCAACACTACAACATAATTGAGATCTAGTTACATTCGAACAATTGTTAGGTAAAATCCGTGTTACTAAAGAGCTTTACTAACATTTTATAGTATTATATATCAGTAAGTTATTCAGATGACACTTTTATTAAGAATAGATTTTAATCCATCCATTCATTTGACACTTTGTTTAGGCATGCCATAGTGAATGATCTTGTTGCATTTGGTGCTACTGTCCACACTTGTTCAAGGACTGAATCAGAGCTCAATAAGTGTTTACAAGAATGGCAAAGTCAGGGATTTTCGGTTACTGGATCGGTCTGTGATGTAAGCTCTCGACCCCAAAGAGAGAGCCTTATTCAACAAGTGGCTTCCACTTTCAATGGCAAGCTCAACATCTTTGTAAGTACTCATTGTGCCAAACGTATAAAAGGGTCTAAGAAAAACATACAATGTTGACTGTTTATTTATGGATCTATGCAGAAAACTATTGAACTGAAGTTTGAATGACATAGGGTTGGAGATAGTAAATGCTTGAGTGGTAGTAGTAGTAGTAGTAGTATTGAGAAAAGAGTGATAACAATGGTAAAGTGGATATGTCTGTGCCACTATTGAGAAAAGATAACATCTTATAAGAGTTTATGAAAAGTAATATTTTTTATCTTACAAGTTAATTTTGTAAGAATAAGTTAGACTCGTTATAAAAATCTAATATAGTATGAAAGTTAGTCTATTTGTTCCGGTCAACTACGAAATTATCCAAACATCAAGTCCAATAACGAAAGAGTTATAAATACTAAACAATGACATCTCTCGCCTTACAAGTAGTCACTGTTTTACTTTAAATACTAAACAATGTATCTGCGCTTAAGATTTTTGTATAGAAATTATGCTAGTCGATCGATGTTTAGAGTTGAGGTCAACAACAAACCGTTTCTTCCTGATTTTTGTTGATTCCTGAATTCATCATTTGGATCTAGTTATTTAATATTTCTCCAAAACTTTTGATATGTCTAGTAAGTACATTGTTTAGAGTCGGATGTCATTCAACAATGGGTGCAGTCTGCAAATGATGCTTATGCGATGAGATAAATTTACAGCAGAAATTAATGAATCACTTTGCTATGAATCATACATATTTGCATGAATTTATGCTTTAGGTAAATAACGTGGGATCAAACTTTAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCAGAGCTAATGACAATTAATTTAGACTCATCATTCCATTTGTGCCAACTTGCATATCCTCTTCTAAAAGAATCTGGAAATGGTAGCATTGTGTTCATTTCATCTGTTGCAGGTGTGGTTAGCTTAGGTACTGGATCTGTCTACGCAGCAAGTAAAGGTGAGTGCTACACTCATTAGTTCTTTTATTTTTTTCATGTAAATGTGATTAATAAAATGTTACGATTAAACGACAATTGTGTTTCATCCATTGAATTTTCAGCTGCAATTAATCAGCTTACAAAAAATTTGGCCTGTGAATGGGCAATAGACAACATAAGGAGCAATTGTGTTGTACCATGGGCAACCAGAACCCCACTTGTAGAACATGTAATTTTCTTGCTCCCTAACTTACTTTTTTTTTTTTTGAAGGAAACTTACTTATTTGGTTGATTGAATCCCACATAGAACCAATAAATATGGATACATAATAATACTCAAAAAAATTATATTTAGACGTCAAAATTTGATGTCAAATACGAGTGTCCTTTGAGTTTTATGTGTATTTTTAAAATGTAAGTTGTAGAAAATAAAAAAGAAATAGAGATAAACATATACGATGTCGCATATAGTAACTGTATTTTGATGTTCAAATATAATTTCTTTAGTATTATTACCATCTGTAATGTCTGCTTATGATTGATTATATGGACTAGCAGTAAATTGTTAGGATAGCATAAATTTAAATATAGTGTTTTTGAATTGATTGTGTCTAATATTTACATTTTTTCATTCATGGAAATACATGACTATTCCTATCTTCAAGTTCAATGGACATTCTTCATACTCTATCAAGCAAATCTTTTTTGTTCAAACTAACAATGGATGTCTCTTGTCTATGTGTTTGATCCAATATTTTTTTTTAATTTTTGTAGTTATTTCAAAATCAAAAGTTTGTGGATGATATTATGTCTCGAACTCCTCTTAAGCGCATTGCCGAACCCGAAGAGGTCTCCTCTTTGGTGACTTTCCTTTGCTTACCTGCTGCATCTTACATCACTGGACAAGTTATTTGTGTTGATGGGGGATTAACTGTGTTTGGATTTCAACCCAGCATGAGAATTACATGA

Protein sequence

>MS.gene008153.t1

MAAVETHSSRGGQRWSLTGMTALVTGGTRGIGHAIVNDLVAFGATVHTCSRTESELNKCLQEWQSQGFSVTGSVCDVSSRPQRESLIQQVASTFNGKLNIFVNNVGSNFRKPTIEYTAEEYSELMTINLDSSFHLCQLAYPLLKESGNGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAIDNIRSNCVVPWATRTPLVEHLFQNQKFVDDIMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGFQPSMRIT