AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63306


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63306.t1 MTR_3g068085 96.310 271 10 0 1 271 1 271 0.0 520
MS.gene63306.t1 MTR_3g068070 89.394 264 28 0 1 264 1 264 2.12e-178 492
MS.gene63306.t1 MTR_3g068065 85.547 256 37 0 15 270 17 272 1.76e-165 459
MS.gene63306.t1 MTR_3g068155 77.068 266 61 0 6 271 10 275 2.64e-156 436
MS.gene63306.t1 MTR_3g068175 73.993 273 69 1 1 271 1 273 1.57e-149 419
MS.gene63306.t1 MTR_3g068175 72.924 277 69 2 1 271 1 277 2.04e-147 414
MS.gene63306.t1 MTR_4g064883 62.109 256 97 0 12 267 11 266 2.66e-125 357
MS.gene63306.t1 MTR_4g064887 61.069 262 102 0 1 262 1 262 1.83e-122 350
MS.gene63306.t1 MTR_7g063320 60.700 257 97 1 9 261 9 265 1.04e-113 328
MS.gene63306.t1 MTR_7g063270 61.240 258 97 1 6 260 7 264 5.21e-111 321
MS.gene63306.t1 MTR_7g063390 60.000 260 100 2 6 261 7 266 1.63e-110 320
MS.gene63306.t1 MTR_7g063360 60.769 260 98 2 6 261 7 266 1.46e-109 317
MS.gene63306.t1 MTR_7g063330 58.175 263 107 1 1 260 1 263 5.08e-109 316
MS.gene63306.t1 MTR_7g063260 59.073 259 102 1 6 260 7 265 1.97e-106 309
MS.gene63306.t1 MTR_4g064887 61.722 209 80 0 1 209 1 209 1.04e-95 281
MS.gene63306.t1 MTR_4g064883 63.131 198 73 0 12 209 11 208 9.45e-94 275
MS.gene63306.t1 MTR_7g063270 51.163 258 74 3 6 260 7 215 1.20e-81 244
MS.gene63306.t1 MTR_4g132850 32.114 246 162 4 15 259 7 248 4.29e-33 121
MS.gene63306.t1 MTR_3g085740 30.488 246 160 6 21 261 81 320 2.23e-30 116
MS.gene63306.t1 MTR_7g094510 32.157 255 157 9 15 259 6 254 4.85e-29 111
MS.gene63306.t1 MTR_7g094520 32.812 256 154 9 15 259 11 259 1.75e-28 109
MS.gene63306.t1 MTR_4g058810 30.651 261 168 9 14 264 10 267 5.08e-28 108
MS.gene63306.t1 MTR_7g071680 31.560 282 155 8 8 260 22 294 1.14e-27 108
MS.gene63306.t1 MTR_4g058840 29.730 259 171 7 15 264 11 267 6.80e-27 105
MS.gene63306.t1 MTR_4g058820 29.730 259 171 7 15 264 11 267 6.80e-27 105
MS.gene63306.t1 MTR_1196s0010 32.510 243 153 6 20 259 279 513 6.27e-25 103
MS.gene63306.t1 MTR_7g083870 30.216 278 172 8 1 260 14 287 1.57e-23 97.4
MS.gene63306.t1 MTR_4g052350 30.502 259 163 10 15 264 14 264 6.04e-23 95.1
MS.gene63306.t1 MTR_4g131740 31.154 260 161 8 15 262 40 293 1.82e-22 94.4
MS.gene63306.t1 MTR_4g052320 29.961 257 168 9 15 264 8 259 2.67e-21 90.5
MS.gene63306.t1 MTR_3g020670 31.136 273 165 11 3 260 6 270 5.87e-21 90.1
MS.gene63306.t1 MTR_7g107670 27.778 270 168 8 7 260 26 284 7.47e-21 90.1
MS.gene63306.t1 MTR_7g113650 30.739 257 165 8 15 262 40 292 5.57e-20 87.4
MS.gene63306.t1 MTR_8g442750 28.125 256 169 6 15 259 14 265 6.15e-20 87.4
MS.gene63306.t1 MTR_6g023990 29.323 266 173 8 4 259 2 262 8.95e-20 86.7
MS.gene63306.t1 MTR_6g023590 27.925 265 177 7 4 259 2 261 1.79e-19 85.5
MS.gene63306.t1 MTR_4g052300 29.183 257 169 10 15 264 8 258 1.98e-19 85.5
MS.gene63306.t1 MTR_3g068075 82.000 50 8 1 123 171 1 50 3.79e-19 80.1
MS.gene63306.t1 MTR_4g052340 27.652 264 164 7 15 264 14 264 3.80e-19 84.7
MS.gene63306.t1 MTR_1g051165 25.954 262 180 8 15 263 14 274 6.19e-19 84.3
MS.gene63306.t1 MTR_4g058830 34.146 164 101 6 106 264 52 213 8.27e-19 82.8
MS.gene63306.t1 MTR_1g068955 30.651 261 162 9 15 263 14 267 1.54e-18 83.6
MS.gene63306.t1 MTR_1g082760 27.907 258 173 7 15 263 40 293 1.55e-18 83.6
MS.gene63306.t1 MTR_4g078630 29.304 273 169 10 3 260 8 271 2.34e-18 82.8
MS.gene63306.t1 MTR_7g105460 27.338 278 180 10 4 270 2 268 1.30e-17 80.9
MS.gene63306.t1 MTR_7g105590 30.645 186 122 5 15 197 8 189 2.12e-17 78.6
MS.gene63306.t1 MTR_6g023910 28.464 267 173 9 4 259 2 261 2.82e-17 79.7
MS.gene63306.t1 MTR_6g023600 28.302 265 176 7 4 259 2 261 2.88e-17 79.7
MS.gene63306.t1 MTR_5g098650 68.627 51 16 0 221 271 124 174 2.10e-16 75.5
MS.gene63306.t1 MTR_6g023950 27.376 263 181 7 4 259 2 261 2.14e-16 77.0
MS.gene63306.t1 MTR_6g023610 27.473 273 180 9 4 265 2 267 5.01e-16 76.3
MS.gene63306.t1 MTR_7g105580 27.059 255 152 8 15 260 8 237 6.84e-16 75.5
MS.gene63306.t1 MTR_7g110140 27.863 262 181 7 11 267 2 260 1.54e-15 74.7
MS.gene63306.t1 MTR_8g089575 30.392 204 133 5 17 213 47 248 2.11e-15 75.1
MS.gene63306.t1 MTR_2g090165 26.692 266 184 7 11 269 2 263 2.19e-15 74.3
MS.gene63306.t1 MTR_6g023600 27.925 265 171 7 4 259 2 255 8.62e-15 72.8
MS.gene63306.t1 MTR_7g110130 26.255 259 178 7 11 261 2 255 1.61e-14 72.0
MS.gene63306.t1 MTR_4g134660 30.769 169 114 2 19 184 10 178 1.87e-14 71.2
MS.gene63306.t1 MTR_1579s0020 35.227 88 56 1 181 268 1 87 4.96e-14 66.6
MS.gene63306.t1 MTR_7g110160 27.626 257 158 7 11 261 2 236 1.30e-13 68.9
MS.gene63306.t1 MTR_8g044240 27.803 223 143 8 21 233 75 289 2.12e-13 69.7
MS.gene63306.t1 MTR_6g035395 27.059 255 165 7 12 261 2 240 8.19e-13 67.0
MS.gene63306.t1 MTR_3g098470 34.459 148 94 3 8 154 25 170 1.42e-12 67.0
MS.gene63306.t1 MTR_3g086210 27.461 193 135 3 17 204 53 245 2.31e-12 66.2
MS.gene63306.t1 MTR_6g041980 34.247 146 84 5 15 154 64 203 3.10e-12 65.5
MS.gene63306.t1 MTR_6g041980 30.144 209 122 6 15 205 64 266 5.14e-12 65.5
MS.gene63306.t1 MTR_7g105570 28.191 188 116 7 94 270 46 225 1.49e-11 63.2
MS.gene63306.t1 MTR_3g113870 26.667 180 126 4 28 205 34 209 1.56e-11 63.2
MS.gene63306.t1 MTR_1g031180 33.784 148 95 3 8 154 30 175 1.70e-11 63.9
MS.gene63306.t1 MTR_1275s0010 31.250 112 77 0 139 250 259 370 1.86e-11 64.3
MS.gene63306.t1 MTR_7g080410 26.111 180 129 3 22 197 45 224 2.60e-11 63.2
MS.gene63306.t1 MTR_7g080410 26.111 180 129 3 22 197 45 224 3.09e-11 62.8
MS.gene63306.t1 MTR_3g087850 26.761 213 142 4 21 232 32 231 7.78e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63306.t1 AT5G06060 69.767 258 78 0 12 269 6 263 3.57e-139 392
MS.gene63306.t1 AT2G29260 61.176 255 99 0 12 266 65 319 2.61e-117 339
MS.gene63306.t1 AT2G29290 59.922 257 101 1 12 266 4 260 2.92e-117 337
MS.gene63306.t1 AT1G07440 60.075 268 101 3 1 266 1 264 6.65e-116 333
MS.gene63306.t1 AT2G29150 60.377 265 103 2 1 264 1 264 1.20e-115 333
MS.gene63306.t1 AT2G29360 59.387 261 106 0 4 264 5 265 2.23e-115 332
MS.gene63306.t1 AT2G29350 59.470 264 106 1 1 264 1 263 1.88e-114 330
MS.gene63306.t1 AT1G07450 59.684 253 101 1 12 264 5 256 1.68e-111 322
MS.gene63306.t1 AT2G29330 60.853 258 97 3 12 266 4 260 1.22e-110 320
MS.gene63306.t1 AT2G29340 57.529 259 108 1 12 268 4 262 1.21e-109 317
MS.gene63306.t1 AT2G29340 57.977 257 106 1 12 266 4 260 4.28e-109 318
MS.gene63306.t1 AT2G30670 58.893 253 104 0 12 264 4 256 1.19e-108 315
MS.gene63306.t1 AT2G29370 55.172 261 117 0 4 264 5 265 5.13e-108 313
MS.gene63306.t1 AT2G29320 58.755 257 103 2 13 266 11 267 7.26e-106 308
MS.gene63306.t1 AT2G29310 57.312 253 108 0 12 264 4 256 1.90e-105 307
MS.gene63306.t1 AT2G29290 58.403 238 97 1 31 266 6 243 9.60e-105 304
MS.gene63306.t1 AT2G29300 56.977 258 108 2 12 266 4 261 2.57e-103 301
MS.gene63306.t1 AT2G29300 56.800 250 107 1 12 260 4 253 6.66e-100 294
MS.gene63306.t1 AT2G29350 59.111 225 91 1 40 264 2 225 7.61e-97 284
MS.gene63306.t1 AT2G29320 57.741 239 98 2 31 266 11 249 3.47e-95 280
MS.gene63306.t1 AT2G29310 55.983 234 103 0 31 264 21 254 2.21e-93 276
MS.gene63306.t1 AT2G29350 60.784 204 80 0 1 204 1 204 2.05e-89 265
MS.gene63306.t1 AT2G29340 56.566 198 86 0 12 209 4 201 1.05e-80 242
MS.gene63306.t1 AT2G29340 56.566 198 86 0 12 209 4 201 1.05e-80 242
MS.gene63306.t1 AT2G29310 56.566 198 86 0 12 209 4 201 1.35e-78 236
MS.gene63306.t1 AT2G29320 59.162 191 77 1 13 202 11 201 7.25e-78 235
MS.gene63306.t1 AT1G07440 58.721 172 68 1 1 172 1 169 7.10e-69 211
MS.gene63306.t1 AT2G29310 54.749 179 81 0 31 209 21 199 3.31e-66 205
MS.gene63306.t1 AT2G29170 58.824 102 41 1 1 101 1 102 2.54e-35 122
MS.gene63306.t1 AT4G05530 32.520 246 161 5 15 259 9 250 2.13e-33 122
MS.gene63306.t1 AT5G18210 32.950 261 160 7 10 259 3 259 8.28e-32 118
MS.gene63306.t1 AT3G03980 30.855 269 167 7 6 259 5 269 2.40e-30 115
MS.gene63306.t1 AT4G13180 32.819 259 164 8 10 261 8 263 2.61e-29 112
MS.gene63306.t1 AT1G24360 30.364 247 159 7 21 261 80 319 6.84e-29 112
MS.gene63306.t1 AT5G18210 32.234 273 156 9 10 271 3 257 6.89e-28 108
MS.gene63306.t1 AT3G46170 29.457 258 171 7 15 263 26 281 7.86e-26 103
MS.gene63306.t1 AT1G54870 33.852 257 157 8 15 262 84 336 2.18e-25 103
MS.gene63306.t1 AT1G54870 33.852 257 157 8 15 262 82 334 2.28e-25 103
MS.gene63306.t1 AT3G55310 30.769 260 165 11 15 263 17 272 2.33e-25 102
MS.gene63306.t1 AT3G55290 30.000 260 167 11 15 263 18 273 8.98e-25 100
MS.gene63306.t1 AT3G55290 29.344 259 170 9 15 263 17 272 9.09e-25 100
MS.gene63306.t1 AT1G63380 28.571 259 173 8 15 263 15 271 2.42e-24 99.4
MS.gene63306.t1 AT1G63380 28.571 259 173 8 15 263 19 275 2.88e-24 99.0
MS.gene63306.t1 AT1G63380 28.571 259 173 8 15 263 17 273 2.89e-24 99.0
MS.gene63306.t1 AT1G62610 28.185 259 174 8 15 263 14 270 3.57e-24 98.6
MS.gene63306.t1 AT1G62610 28.185 259 174 8 15 263 15 271 3.82e-24 98.6
MS.gene63306.t1 AT1G63380 28.571 259 173 8 15 263 22 278 3.84e-24 99.0
MS.gene63306.t1 AT1G62610 28.185 259 174 8 15 263 13 269 3.88e-24 98.6
MS.gene63306.t1 AT1G62610 28.185 259 174 8 15 263 19 275 4.06e-24 98.6
MS.gene63306.t1 AT3G05260 33.208 265 165 7 6 262 28 288 4.59e-24 98.6
MS.gene63306.t1 AT2G17845 28.897 263 171 9 15 264 47 306 1.99e-23 97.4
MS.gene63306.t1 AT3G04000 31.734 271 165 8 4 258 3 269 3.55e-23 95.9
MS.gene63306.t1 AT3G26760 29.323 266 170 7 8 260 30 290 4.53e-22 93.6
MS.gene63306.t1 AT3G51680 33.166 199 123 5 15 205 32 228 5.98e-22 93.2
MS.gene63306.t1 AT2G47120 28.947 266 169 13 11 267 2 256 1.96e-20 88.2
MS.gene63306.t1 AT2G47120 29.008 262 166 13 15 267 7 257 2.84e-20 87.8
MS.gene63306.t1 AT3G12800 26.070 257 174 7 15 259 10 262 4.44e-20 87.8
MS.gene63306.t1 AT1G52340 29.278 263 164 8 15 260 18 275 1.87e-19 85.9
MS.gene63306.t1 AT4G03140 26.562 256 174 6 15 260 78 329 3.79e-19 85.9
MS.gene63306.t1 AT2G47130 29.457 258 169 9 11 261 2 253 2.59e-18 82.4
MS.gene63306.t1 AT1G10310 34.132 167 107 3 19 184 19 183 1.63e-15 74.3
MS.gene63306.t1 AT5G04900 31.492 181 116 6 21 195 83 261 2.62e-15 75.1
MS.gene63306.t1 AT3G29260 30.798 263 159 13 11 261 2 253 7.33e-15 72.8
MS.gene63306.t1 AT2G47140 27.843 255 170 8 15 261 6 254 2.25e-14 71.6
MS.gene63306.t1 AT1G24470 27.053 207 134 6 17 213 52 251 4.44e-14 71.2
MS.gene63306.t1 AT3G42960 28.794 257 159 9 20 260 13 261 5.75e-14 70.5
MS.gene63306.t1 AT3G26770 25.940 266 175 7 15 264 41 300 1.60e-13 69.7
MS.gene63306.t1 AT5G10050 26.291 213 143 4 21 232 11 210 1.77e-13 69.3
MS.gene63306.t1 AT5G65205 30.000 180 115 5 21 197 12 183 1.97e-13 69.3
MS.gene63306.t1 AT4G13250 25.391 256 152 8 21 243 165 414 3.51e-13 69.3
MS.gene63306.t1 AT4G09750 30.144 209 122 6 15 205 41 243 4.80e-12 65.5
MS.gene63306.t1 AT3G47350 26.636 214 142 7 17 221 46 253 5.77e-12 65.1
MS.gene63306.t1 AT3G47350 26.636 214 142 7 17 221 46 253 7.04e-12 65.1
MS.gene63306.t1 AT3G03330 26.904 197 139 3 6 197 32 228 7.24e-12 65.1
MS.gene63306.t1 AT3G06060 25.743 202 143 2 9 207 48 245 7.99e-12 65.1
MS.gene63306.t1 AT3G06060 25.743 202 143 2 9 207 31 228 8.10e-12 64.7

Find 54 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGTTTACACTTGTTCT+AGG 0.259656 3.3:-60334584 MS.gene63306:CDS
CATCCTCTGCTTAAAGAATC+TGG 0.325649 3.3:-60334106 MS.gene63306:CDS
AATGGGCGAAAGACAATATA+AGG 0.356013 3.3:-60333878 MS.gene63306:CDS
GGACAGATTGTTTCTGTTGA+TGG 0.357615 3.3:-60332265 MS.gene63306:CDS
GGTTCTGCTATACGCTTTAT+CGG 0.380929 3.3:+60332346 None:intergenic
GTTGAAGAACTCGCTGAGTT+TGG 0.389672 3.3:-60334609 MS.gene63306:CDS
CTGCTTAAAGAATCTGGAAA+TGG 0.406314 3.3:-60334100 MS.gene63306:CDS
GAAGCCAACAATTGAGTATA+CGG 0.419549 3.3:-60334194 MS.gene63306:CDS
ACCGGCGGAACGCGTGGAAT+CGG 0.443421 3.3:-60334642 MS.gene63306:CDS
GGATTAGGTAATCCTCATGC+TGG 0.447027 3.3:+60332216 None:intergenic
GATGGAGGATTTACTGTGAA+TGG 0.451398 3.3:-60332247 MS.gene63306:CDS
TCAGCCGTATACTCAATTGT+TGG 0.456707 3.3:+60334190 None:intergenic
TCTCTCACAAGCATAGGTTC+TGG 0.458121 3.3:-60334049 MS.gene63306:CDS
TGCATACCATCTATGTCAAT+TGG 0.460251 3.3:-60334131 MS.gene63306:CDS
AGCGTTTATTCAGCTCCTCT+TGG 0.468728 3.3:+60334559 None:intergenic
GAAAGTGATGACTACTAACT+TGG 0.480086 3.3:-60334158 MS.gene63306:CDS
TCCGATTCCACGCGTTCCGC+CGG 0.497124 3.3:+60334641 None:intergenic
TGAGTTTAGGTGAACAATGC+TGG 0.497981 3.3:-60334229 MS.gene63306:intron
AAGAGCGGTGGTTCCCTTGA+GGG 0.505200 3.3:+60334668 None:intergenic
CTTGTCACCGGCGGAACGCG+TGG 0.512318 3.3:-60334648 MS.gene63306:CDS
CCAGCTGCTTCCTACATCAC+TGG 0.520639 3.3:-60332286 MS.gene63306:CDS
ACCACATGAAGTGTCTTCCT+TGG 0.531653 3.3:-60332326 MS.gene63306:CDS
AACGTGGCTTCTTCTTTCAA+CGG 0.542163 3.3:-60334450 MS.gene63306:CDS
TGATGTAGGAAGCAGCTGGC+AGG 0.543439 3.3:+60332290 None:intergenic
TTAAACGAGTGGAAAGAGAA+AGG 0.546612 3.3:-60334537 MS.gene63306:CDS
AGCGTCTATGCAGCAAGTAA+AGG 0.551642 3.3:-60334025 MS.gene63306:intron
AACAATCTGTCCAGTGATGT+AGG 0.551671 3.3:+60332276 None:intergenic
GATGTACCAATTGACATAGA+TGG 0.556385 3.3:+60334125 None:intergenic
GGAACCACCGCTCTTGTCAC+CGG 0.562041 3.3:-60334660 MS.gene63306:CDS
TTTCCAGATTCTTTAAGCAG+AGG 0.567292 3.3:+60334103 None:intergenic
GATTAGGTAATCCTCATGCT+GGG 0.570838 3.3:+60332217 None:intergenic
AAGCTCAAGATGGTCCCTCA+AGG 0.573784 3.3:-60334682 MS.gene63306:CDS
CAGATTGTTTCTGTTGATGG+AGG 0.575569 3.3:-60332262 MS.gene63306:CDS
AGGAAGCAGCTGGCAGGCAA+AGG 0.580855 3.3:+60332296 None:intergenic
CAAGAGCGGTGGTTCCCTTG+AGG 0.592264 3.3:+60334667 None:intergenic
CCAGTGATGTAGGAAGCAGC+TGG 0.595402 3.3:+60332286 None:intergenic
ATCATCTTCTTCTCAAAGAG+AGG 0.596910 3.3:-60334484 MS.gene63306:CDS
AGCTCAAGATGGTCCCTCAA+GGG 0.601552 3.3:-60334681 MS.gene63306:CDS
AGCATTACATGTTCCACAAG+TGG 0.604747 3.3:+60333822 None:intergenic
GTTGCATCTCTCACAAGCAT+AGG 0.610660 3.3:-60334055 MS.gene63306:CDS
GCAGTAGCAGAAGCTCAAGA+TGG 0.612756 3.3:-60334692 MS.gene63306:CDS
ATGGATTTCAACCCAGCATG+AGG 0.617391 3.3:-60332228 MS.gene63306:CDS
TGAATAAACGCTTAAACGAG+TGG 0.622975 3.3:-60334548 MS.gene63306:CDS
CGTTCCGCCGGTGACAAGAG+CGG 0.623119 3.3:+60334653 None:intergenic
GGAGCAACTGCGTTGCACCC+TGG 0.632107 3.3:-60333857 MS.gene63306:CDS
TCCGCCGGTGACAAGAGCGG+TGG 0.632560 3.3:+60334656 None:intergenic
GTATACGAAAACACCACTTG+TGG 0.645433 3.3:-60333835 MS.gene63306:CDS
ACCACCGCTCTTGTCACCGG+CGG 0.656160 3.3:-60334657 MS.gene63306:CDS
AGAGGAGCTTATTCGAAACG+TGG 0.683344 3.3:-60334466 MS.gene63306:CDS
CACTTGTTCTAGGAACCAAG+AGG 0.692789 3.3:-60334574 MS.gene63306:CDS
ACCAAGGAAGACACTTCATG+TGG 0.707139 3.3:+60332325 None:intergenic
CAGGCAAAGGAAAGTCACCA+AGG 0.712267 3.3:+60332309 None:intergenic
CCTAGAACAAGTGTAAACTG+TGG 0.737540 3.3:+60334584 None:intergenic
ACAATGCTGGAACAAATGTG+AGG 0.761871 3.3:-60334216 MS.gene63306:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAGTATTAATCTATAAA+TGG - chr3.3:60334465-60334484 MS.gene63306:CDS 15.0%
!! CAAAAGAAAATATATAGAAA+AGG + chr3.3:60332529-60332548 None:intergenic 15.0%
!!! TATTCTTCTATTTTGTTATT+AGG - chr3.3:60333257-60333276 MS.gene63306:intron 15.0%
!! AATTCTTTAGATTATTGAAC+AGG - chr3.3:60333400-60333419 MS.gene63306:intron 20.0%
!! ATCCATTATATTTAAGCAAA+AGG + chr3.3:60332958-60332977 None:intergenic 20.0%
!! TAGAACCAAAAAGAATAAAT+TGG - chr3.3:60333668-60333687 MS.gene63306:intron 20.0%
!! TTTGTAATCATGATTTGATT+TGG - chr3.3:60333190-60333209 MS.gene63306:intron 20.0%
!!! AACCTTTTGCTTAAATATAA+TGG - chr3.3:60332953-60332972 MS.gene63306:intron 20.0%
!!! AGTAACCAATTTATTCTTTT+TGG + chr3.3:60333676-60333695 None:intergenic 20.0%
!!! TTTTGCTTAAATATAATGGA+TGG - chr3.3:60332957-60332976 MS.gene63306:intron 20.0%
! AAAAAATCTTGCTTGTGAAT+GGG - chr3.3:60333032-60333051 MS.gene63306:intron 25.0%
! AACTTCAATTATTCATTCCA+TGG - chr3.3:60333135-60333154 MS.gene63306:intron 25.0%
! ATCAAAATTGCTTGCATATT+TGG - chr3.3:60333426-60333445 MS.gene63306:intron 25.0%
! ATGTATATGATACACAATTG+TGG - chr3.3:60334003-60334022 MS.gene63306:intron 25.0%
! ATTCATTTAGTATTGCATAC+AGG - chr3.3:60333901-60333920 MS.gene63306:CDS 25.0%
! ATTGAAGATATATCCAATGT+CGG + chr3.3:60332622-60332641 None:intergenic 25.0%
! CAATGTAATTACTTCCATAA+AGG - chr3.3:60333566-60333585 MS.gene63306:intron 25.0%
! CATACGAATAAGAAATGAAT+TGG - chr3.3:60334209-60334228 MS.gene63306:CDS 25.0%
! TAAAAAAAATGACAAAGCCA+TGG + chr3.3:60333155-60333174 None:intergenic 25.0%
! TACTCTTATCACAAGTTTAA+TGG - chr3.3:60333495-60333514 MS.gene63306:intron 25.0%
! TCAAAATTGCTTGCATATTT+GGG - chr3.3:60333427-60333446 MS.gene63306:intron 25.0%
! TGATTATCAAATGACCTTTA+TGG + chr3.3:60333583-60333602 None:intergenic 25.0%
! TTCATTTAGTATTGCATACA+GGG - chr3.3:60333902-60333921 MS.gene63306:CDS 25.0%
!! GACATAGTAAAACATGATTT+TGG + chr3.3:60334063-60334082 None:intergenic 25.0%
!!! ACATTCATACTCATTTTTGT+AGG - chr3.3:60333319-60333338 MS.gene63306:intron 25.0%
AATTCACAATATTTGCACCT+AGG - chr3.3:60333627-60333646 MS.gene63306:intron 30.0%
AGTCCTCAACTATAAAAGAT+TGG + chr3.3:60334085-60334104 None:intergenic 30.0%
ATAGTTGAGGACTGTATATT+TGG - chr3.3:60334092-60334111 MS.gene63306:CDS 30.0%
ATTAATACTACATGAGCACA+CGG + chr3.3:60334458-60334477 None:intergenic 30.0%
ATTCACAATATTTGCACCTA+GGG - chr3.3:60333628-60333647 MS.gene63306:intron 30.0%
ATTGGTCATTGTTTAATCAG+GGG - chr3.3:60333227-60333246 MS.gene63306:intron 30.0%
ATTGTTTAATCAGGGGAATA+TGG - chr3.3:60333234-60333253 MS.gene63306:intron 30.0%
CAAAAAATCTTGCTTGTGAA+TGG - chr3.3:60333031-60333050 MS.gene63306:intron 30.0%
TATGATGTTCTTGTGAGTTT+AGG - chr3.3:60332685-60332704 MS.gene63306:intron 30.0%
TTAAACAATGACCAATCAGT+CGG + chr3.3:60333223-60333242 None:intergenic 30.0%
! ATATCTTCAATCAGAAGTGT+CGG - chr3.3:60332631-60332650 MS.gene63306:intron 30.0%
! GAGAAAGGTTTTTCTGTTTA+TGG - chr3.3:60332405-60332424 MS.gene63306:intron 30.0%
! GATTGGTCATTGTTTAATCA+GGG - chr3.3:60333226-60333245 MS.gene63306:intron 30.0%
! TGATTGGTCATTGTTTAATC+AGG - chr3.3:60333225-60333244 MS.gene63306:intron 30.0%
! TGTCCAATCTTTTATAGTTG+AGG - chr3.3:60334079-60334098 MS.gene63306:CDS 30.0%
! TTAATGGTTTTCCATGTTGA+CGG - chr3.3:60333511-60333530 MS.gene63306:intron 30.0%
!! AAGAAATGAATTGGCTTTGA+GGG - chr3.3:60334218-60334237 MS.gene63306:CDS 30.0%
!! TAAGAAATGAATTGGCTTTG+AGG - chr3.3:60334217-60334236 MS.gene63306:CDS 30.0%
!!! ACTTTTTTGTTAAGACGCAT+GGG - chr3.3:60334261-60334280 MS.gene63306:intron 30.0%
!!! TTTTGGTTCTAACTGACAAA+TGG + chr3.3:60333659-60333678 None:intergenic 30.0%
AATGGGCGAAAGACAATATA+AGG - chr3.3:60333049-60333068 MS.gene63306:intron 35.0%
AATTGCTTGCATATTTGGGA+TGG - chr3.3:60333431-60333450 MS.gene63306:intron 35.0%
ACATACGTGAATCAAACAGA+AGG + chr3.3:60333987-60334006 None:intergenic 35.0%
ATCATCTTCTTCTCAAAGAG+AGG - chr3.3:60332443-60332462 MS.gene63306:intron 35.0%
ATCCCTTCACAAATTGTCTA+TGG - chr3.3:60333802-60333821 MS.gene63306:intron 35.0%
CTGCTTAAAGAATCTGGAAA+TGG - chr3.3:60332827-60332846 MS.gene63306:intron 35.0%
GAAAGTGATGACTACTAACT+TGG - chr3.3:60332769-60332788 MS.gene63306:intron 35.0%
GAAGCCAACAATTGAGTATA+CGG - chr3.3:60332733-60332752 MS.gene63306:intron 35.0%
GATGTACCAATTGACATAGA+TGG + chr3.3:60332805-60332824 None:intergenic 35.0%
TAATCGTCAGTGTTGTCAAA+TGG + chr3.3:60333867-60333886 None:intergenic 35.0%
TGAATAAACGCTTAAACGAG+TGG - chr3.3:60332379-60332398 MS.gene63306:CDS 35.0%
TGCATACCATCTATGTCAAT+TGG - chr3.3:60332796-60332815 MS.gene63306:intron 35.0%
TTAAACGAGTGGAAAGAGAA+AGG - chr3.3:60332390-60332409 MS.gene63306:CDS 35.0%
TTTCCAGATTCTTTAAGCAG+AGG + chr3.3:60332827-60332846 None:intergenic 35.0%
! GATACATTTTTCCGTCAACA+TGG + chr3.3:60333525-60333544 None:intergenic 35.0%
! TGGAGGATTTTCTGCTATAT+AGG - chr3.3:60334383-60334402 MS.gene63306:intron 35.0%
!! ATGATTTTGGCATCTTCACA+TGG + chr3.3:60334050-60334069 None:intergenic 35.0%
!!! GACTTTTTTGTTAAGACGCA+TGG - chr3.3:60334260-60334279 MS.gene63306:intron 35.0%
AACAATCTGTCCAGTGATGT+AGG + chr3.3:60334654-60334673 None:intergenic 40.0%
AACAGAAGGCAGTGGAATTA+TGG + chr3.3:60333973-60333992 None:intergenic 40.0%
AACGTGGCTTCTTCTTTCAA+CGG - chr3.3:60332477-60332496 MS.gene63306:intron 40.0%
ACAATGCTGGAACAAATGTG+AGG - chr3.3:60332711-60332730 MS.gene63306:intron 40.0%
ACAGTTGTAGCAAGTGATTC+TGG - chr3.3:60334153-60334172 MS.gene63306:CDS 40.0%
AGCATTACATGTTCCACAAG+TGG + chr3.3:60333108-60333127 None:intergenic 40.0%
CACATGGATCAAGGTAACAT+TGG + chr3.3:60334034-60334053 None:intergenic 40.0%
CAGTTGTAGCAAGTGATTCT+GGG - chr3.3:60334154-60334173 MS.gene63306:CDS 40.0%
CATCCTCTGCTTAAAGAATC+TGG - chr3.3:60332821-60332840 MS.gene63306:intron 40.0%
CCACAGTTTACACTTGTTCT+AGG - chr3.3:60332343-60332362 MS.gene63306:CDS 40.0%
CCTAGAACAAGTGTAAACTG+TGG + chr3.3:60332346-60332365 None:intergenic 40.0%
CCTTCACAAATTGTCTATGG+CGG - chr3.3:60333805-60333824 MS.gene63306:intron 40.0%
CGCCATAGACAATTTGTGAA+GGG + chr3.3:60333807-60333826 None:intergenic 40.0%
GAGGACTGTATATTTGGATC+TGG - chr3.3:60334098-60334117 MS.gene63306:CDS 40.0%
GATGGAGGATTTACTGTGAA+TGG - chr3.3:60334680-60334699 MS.gene63306:CDS 40.0%
GGGCATCAATATGGCAAATA+TGG - chr3.3:60334238-60334257 MS.gene63306:intron 40.0%
GGTTCTGCTATACGCTTTAT+CGG + chr3.3:60334584-60334603 None:intergenic 40.0%
GTACTTGTCTGTAGTCTTTG+AGG - chr3.3:60333371-60333390 MS.gene63306:intron 40.0%
GTATACGAAAACACCACTTG+TGG - chr3.3:60333092-60333111 MS.gene63306:intron 40.0%
TCAGCCGTATACTCAATTGT+TGG + chr3.3:60332740-60332759 None:intergenic 40.0%
TGAGTTTAGGTGAACAATGC+TGG - chr3.3:60332698-60332717 MS.gene63306:intron 40.0%
TGGCTCTTTAACATCTTTCC+TGG - chr3.3:60334286-60334305 MS.gene63306:intron 40.0%
TTGGATGAATTCCGACTGAT+TGG - chr3.3:60333209-60333228 MS.gene63306:intron 40.0%
TTTGTTAAGACGCATGGGTT+TGG - chr3.3:60334266-60334285 MS.gene63306:intron 40.0%
! AAGTGGTGTTTTCGTATACC+AGG + chr3.3:60333091-60333110 None:intergenic 40.0%
! AGTGGTGTTTTCGTATACCA+GGG + chr3.3:60333090-60333109 None:intergenic 40.0%
! GTTGGTTTATCTGTGTATGG+AGG - chr3.3:60334366-60334385 MS.gene63306:intron 40.0%
!! CAGATTGTTTCTGTTGATGG+AGG - chr3.3:60334665-60334684 MS.gene63306:CDS 40.0%
!! GGACAGATTGTTTCTGTTGA+TGG - chr3.3:60334662-60334681 MS.gene63306:CDS 40.0%
!! GTGGTTGGTTTATCTGTGTA+TGG - chr3.3:60334363-60334382 MS.gene63306:intron 40.0%
ACCAAGGAAGACACTTCATG+TGG + chr3.3:60334605-60334624 None:intergenic 45.0%
AGAGGAGCTTATTCGAAACG+TGG - chr3.3:60332461-60332480 MS.gene63306:intron 45.0%
AGCGTCTATGCAGCAAGTAA+AGG - chr3.3:60332902-60332921 MS.gene63306:intron 45.0%
AGCGTTTATTCAGCTCCTCT+TGG + chr3.3:60332371-60332390 None:intergenic 45.0%
ATGGATTTCAACCCAGCATG+AGG - chr3.3:60334699-60334718 MS.gene63306:CDS 45.0%
CCGCCATAGACAATTTGTGA+AGG + chr3.3:60333808-60333827 None:intergenic 45.0%
CGATGGTGCAATATGACAGA+AGG - chr3.3:60333725-60333744 MS.gene63306:intron 45.0%
GTGAATCAAACAGAAGGCAG+TGG + chr3.3:60333981-60334000 None:intergenic 45.0%
GTGATTACCAGTGTTGTCGA+TGG - chr3.3:60333708-60333727 MS.gene63306:intron 45.0%
GTTGAAGAACTCGCTGAGTT+TGG - chr3.3:60332318-60332337 MS.gene63306:CDS 45.0%
GTTGCATCTCTCACAAGCAT+AGG - chr3.3:60332872-60332891 MS.gene63306:intron 45.0%
TATTGCACCATCGACAACAC+TGG + chr3.3:60333718-60333737 None:intergenic 45.0%
TCTCTCACAAGCATAGGTTC+TGG - chr3.3:60332878-60332897 MS.gene63306:intron 45.0%
TGGCATCTTCACATGGATCA+AGG + chr3.3:60334043-60334062 None:intergenic 45.0%
TTGTAGCAAGTGATTCTGGG+TGG - chr3.3:60334157-60334176 MS.gene63306:CDS 45.0%
! ACCACATGAAGTGTCTTCCT+TGG - chr3.3:60334601-60334620 MS.gene63306:CDS 45.0%
! GCTGCAATGGCGTATTTCTA+TGG + chr3.3:60333761-60333780 None:intergenic 45.0%
!! CACTTGTTCTAGGAACCAAG+AGG - chr3.3:60332353-60332372 MS.gene63306:CDS 45.0%
!! TGGCTTTGAGGGCATCAATA+TGG - chr3.3:60334229-60334248 MS.gene63306:intron 45.0%
AAGCTCAAGATGGTCCCTCA+AGG - chr3.3:60332245-60332264 MS.gene63306:CDS 50.0%
ACCACCTACACAAACACAGC+AGG + chr3.3:60334348-60334367 None:intergenic 50.0%
ACTAGAGCATGTGCAGATCC+AGG + chr3.3:60334307-60334326 None:intergenic 50.0%
AGCTCAAGATGGTCCCTCAA+GGG - chr3.3:60332246-60332265 MS.gene63306:CDS 50.0%
CAGGCAAAGGAAAGTCACCA+AGG + chr3.3:60334621-60334640 None:intergenic 50.0%
CATGTGTCTGTGTCCGACAT+TGG - chr3.3:60332606-60332625 MS.gene63306:intron 50.0%
GCAGTAGCAGAAGCTCAAGA+TGG - chr3.3:60332235-60332254 MS.gene63306:CDS 50.0%
GCTGTGTTTGTGTAGGTGGT+TGG - chr3.3:60334348-60334367 MS.gene63306:intron 50.0%
GTGTTGTCAAATGGCTGCCA+TGG + chr3.3:60333858-60333877 None:intergenic 50.0%
TGTGCCTGCTGTGTTTGTGT+AGG - chr3.3:60334341-60334360 MS.gene63306:intron 50.0%
AAGAGCGGTGGTTCCCTTGA+GGG + chr3.3:60332262-60332281 None:intergenic 55.0%
ACCGACACGTCATTCTGCCA+TGG - chr3.3:60333838-60333857 MS.gene63306:CDS 55.0%
CCAGCTGCTTCCTACATCAC+TGG - chr3.3:60334641-60334660 MS.gene63306:CDS 55.0%
CCAGTGATGTAGGAAGCAGC+TGG + chr3.3:60334644-60334663 None:intergenic 55.0%
CTGACAAATGGCGCTTCCCT+AGG + chr3.3:60333647-60333666 None:intergenic 55.0%
GCCATGGCAGAATGACGTGT+CGG + chr3.3:60333842-60333861 None:intergenic 55.0%
GCCTGCTGTGTTTGTGTAGG+TGG - chr3.3:60334344-60334363 MS.gene63306:intron 55.0%
TGATGTAGGAAGCAGCTGGC+AGG + chr3.3:60334640-60334659 None:intergenic 55.0%
TGGCATGGCATAGGCTGCAA+TGG + chr3.3:60333774-60333793 None:intergenic 55.0%
TTGCAGCCTATGCCATGCCA+TGG - chr3.3:60333774-60333793 MS.gene63306:intron 55.0%
TTGTGAAGGGATGCCTGCCA+TGG + chr3.3:60333794-60333813 None:intergenic 55.0%
AAGGGATGCCTGCCATGGCA+TGG + chr3.3:60333789-60333808 None:intergenic 60.0%
AGCCTATGCCATGCCATGGC+AGG - chr3.3:60333778-60333797 MS.gene63306:intron 60.0%
AGGAAGCAGCTGGCAGGCAA+AGG + chr3.3:60334634-60334653 None:intergenic 60.0%
CAAGAGCGGTGGTTCCCTTG+AGG + chr3.3:60332263-60332282 None:intergenic 60.0%
GGAACCACCGCTCTTGTCAC+CGG - chr3.3:60332267-60332286 MS.gene63306:CDS 60.0%
TGCCTGCCATGGCATGGCAT+AGG + chr3.3:60333783-60333802 None:intergenic 60.0%
ACCACCGCTCTTGTCACCGG+CGG - chr3.3:60332270-60332289 MS.gene63306:CDS 65.0%
ACCGGCGGAACGCGTGGAAT+CGG - chr3.3:60332285-60332304 MS.gene63306:CDS 65.0%
CGTTCCGCCGGTGACAAGAG+CGG + chr3.3:60332277-60332296 None:intergenic 65.0%
GGAGCAACTGCGTTGCACCC+TGG - chr3.3:60333070-60333089 MS.gene63306:intron 65.0%
TCCGATTCCACGCGTTCCGC+CGG + chr3.3:60332289-60332308 None:intergenic 65.0%
CTTGTCACCGGCGGAACGCG+TGG - chr3.3:60332279-60332298 MS.gene63306:CDS 70.0%
TCCGCCGGTGACAAGAGCGG+TGG + chr3.3:60332274-60332293 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 60332219 60334730 60332219 ID=MS.gene63306
chr3.3 mRNA 60332219 60334730 60332219 ID=MS.gene63306.t1;Parent=MS.gene63306
chr3.3 exon 60334434 60334730 60334434 ID=MS.gene63306.t1.exon1;Parent=MS.gene63306.t1
chr3.3 CDS 60334434 60334730 60334434 ID=cds.MS.gene63306.t1;Parent=MS.gene63306.t1
chr3.3 exon 60334026 60334242 60334026 ID=MS.gene63306.t1.exon2;Parent=MS.gene63306.t1
chr3.3 CDS 60334026 60334242 60334026 ID=cds.MS.gene63306.t1;Parent=MS.gene63306.t1
chr3.3 exon 60333830 60333936 60333830 ID=MS.gene63306.t1.exon3;Parent=MS.gene63306.t1
chr3.3 CDS 60333830 60333936 60333830 ID=cds.MS.gene63306.t1;Parent=MS.gene63306.t1
chr3.3 exon 60332219 60332413 60332219 ID=MS.gene63306.t1.exon4;Parent=MS.gene63306.t1
chr3.3 CDS 60332219 60332413 60332219 ID=cds.MS.gene63306.t1;Parent=MS.gene63306.t1
Gene Sequence

>MS.gene63306

ATGGCGAACGCAGAGAGCAGTAGCAGAAGCTCAAGATGGTCCCTCAAGGGAACCACCGCTCTTGTCACCGGCGGAACGCGTGGAATCGGACATGCTATCGTTGAAGAACTCGCTGAGTTTGGTGCCACAGTTTACACTTGTTCTAGGAACCAAGAGGAGCTGAATAAACGCTTAAACGAGTGGAAAGAGAAAGGTTTTTCTGTTTATGGATCAGTTTGTGATGCATCATCTTCTTCTCAAAGAGAGGAGCTTATTCGAAACGTGGCTTCTTCTTTCAACGGCAAACTCAACATATTTGTGAGTTTTTCCTTTTCTATATATTTTCTTTTGCATTTGTATATAATGTTGATATTGAAATTAAGAAAATGACGTAATTGTATGTAATCACATGTGTCTGTGTCCGACATTGGATATATCTTCAATCAGAAGTGTCGGTGTTATGTTATAACTTCAGCTCATATGTTGATATGATGTTCTTGTGAGTTTAGGTGAACAATGCTGGAACAAATGTGAGGAAGCCAACAATTGAGTATACGGCTGAAGATTATTCGAAAGTGATGACTACTAACTTGGATTCTGCATACCATCTATGTCAATTGGTACATCCTCTGCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCATCTCTCACAAGCATAGGTTCTGGAAGCGTCTATGCAGCAAGTAAAGGTAATTCAATGTATCATTATGTTATCTTTAACCTTTTGCTTAAATATAATGGATGGAAACTAAAAAATTCATTGTGTTTTTTTCTTCAGCTGCAATCAATCAGTTGACAAAAAATCTTGCTTGTGAATGGGCGAAAGACAATATAAGGAGCAACTGCGTTGCACCCTGGTATACGAAAACACCACTTGTGGAACATGTAATGCTCTTTCACAACTTCAATTATTCATTCCATGGCTTTGTCATTTTTTTTATGAATATTGTTTGAATTTGTAATCATGATTTGATTTGGATGAATTCCGACTGATTGGTCATTGTTTAATCAGGGGAATATGGTATTCTTCTATTTTGTTATTAGGTTCTTCATAGTAAATAATGATCTGTTCTTTGATGTTTTCACATTCATACTCATTTTTGTAGGATTAGTAAGAATTAAGATACAACTTAGAAGTACTTGTCTGTAGTCTTTGAGGCTCGATAATTCTTTAGATTATTGAACAGGAAAATCAAAATTGCTTGCATATTTGGGATGGCTCATATAGAGTCTTGTATAGCTGCATTGTGATTTCATTAGTACTCTTATCACAAGTTTAATGGTTTTCCATGTTGACGGAAAAATGTATCTTTTAGTGTTTTGTTTTCAATCAATGTAATTACTTCCATAAAGGTCATTTGATAATCAGACACTTTAAAGCATTAACAATCAAATTCACAATATTTGCACCTAGGGAAGCGCCATTTGTCAGTTAGAACCAAAAAGAATAAATTGGTTACTTCTTTCTTCTCAGTGATTACCAGTGTTGTCGATGGTGCAATATGACAGAAGGCTAAAATACGCCATAGAAATACGCCATTGCAGCCTATGCCATGCCATGGCAGGCATCCCTTCACAAATTGTCTATGGCGGTTGTCATAAAACCGACACGTCATTCTGCCATGGCAGCCATTTGACAACACTGACGATTAATTGCATTACATAAATTCATTTAGTATTGCATACAGGGTGACTTAAATGACAACTTTTTAACTGATCTGACAGTTTTTCTTCTCCATAATTCCACTGCCTTCTGTTTGATTCACGTATGTATATGATACACAATTGTGGCTCATCCAATGTTACCTTGATCCATGTGAAGATGCCAAAATCATGTTTTACTATGTCCAATCTTTTATAGTTGAGGACTGTATATTTGGATCTGGAACATTGATCTTTCTATGTGTTATTGTATTACACAGTTGTAGCAAGTGATTCTGGGTGGTCGTTTAGAATAAACTTCTTAAATTAATACATACGAATAAGAAATGAATTGGCTTTGAGGGCATCAATATGGCAAATATGGACTTTTTTGTTAAGACGCATGGGTTTGGCTCTTTAACATCTTTCCTGGATCTGCACATGCTCTAGTGTAGTGTGCTGTGCTGTGCCTGCTGTGTTTGTGTAGGTGGTTGGTTTATCTGTGTATGGAGGATTTTCTGCTATATAGGCTAACTCATTAAGTGCTGATGAATCGAAACACATCTGTGACTCTAATGTCCGTGTGCTCATGTAGTATTAATCTATAAATGGCAATGTTATGTTCATAACTTGTGTTGCGAATTGTTGTCTTTCTTACAGTTAATTGCTAACGAAGAGTTTGTGAATCAAGTGCTGTCTCGAACACCGATAAAGCGTATAGCAGAACCACATGAAGTGTCTTCCTTGGTGACTTTCCTTTGCCTGCCAGCTGCTTCCTACATCACTGGACAGATTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCATGAGGATTACCTAA

Protein sequence

>MS.gene63306.t1

MANAESSSRSSRWSLKGTTALVTGGTRGIGHAIVEELAEFGATVYTCSRNQEELNKRLNEWKEKGFSVYGSVCDASSSSQREELIRNVASSFNGKLNIFVNNAGTNVRKPTIEYTAEDYSKVMTTNLDSAYHLCQLVHPLLKESGNGSIVFISSVASLTSIGSGSVYAASKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTPLVEHLIANEEFVNQVLSRTPIKRIAEPHEVSSLVTFLCLPAASYITGQIVSVDGGFTVNGFQPSMRIT