AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63300.t1 MTR_3g068155 96.727 275 9 0 1 275 1 275 0.0 551
MS.gene63300.t1 MTR_3g068175 78.676 272 58 0 4 275 2 273 1.10e-158 442
MS.gene63300.t1 MTR_3g068175 77.536 276 58 1 4 275 2 277 3.84e-156 436
MS.gene63300.t1 MTR_3g068085 77.432 257 58 0 19 275 15 271 1.07e-151 424
MS.gene63300.t1 MTR_3g068070 75.769 260 63 0 9 268 5 264 1.82e-149 419
MS.gene63300.t1 MTR_3g068065 73.438 256 68 0 19 274 17 272 1.21e-142 402
MS.gene63300.t1 MTR_4g064883 64.591 257 91 0 15 271 10 266 1.85e-129 368
MS.gene63300.t1 MTR_4g064887 61.776 259 99 0 7 265 3 261 2.42e-121 347
MS.gene63300.t1 MTR_7g063320 58.175 263 106 1 7 265 3 265 4.15e-110 319
MS.gene63300.t1 MTR_7g063390 58.846 260 103 1 10 265 7 266 1.68e-106 310
MS.gene63300.t1 MTR_7g063270 57.364 258 107 1 10 264 7 264 2.85e-105 306
MS.gene63300.t1 MTR_7g063330 56.489 262 111 1 6 264 2 263 3.42e-105 306
MS.gene63300.t1 MTR_7g063360 57.692 260 106 1 10 265 7 266 7.63e-104 303
MS.gene63300.t1 MTR_7g063260 55.985 259 110 1 10 264 7 265 8.74e-102 298
MS.gene63300.t1 MTR_4g064883 66.162 198 67 0 15 212 10 207 1.18e-96 283
MS.gene63300.t1 MTR_4g064887 60.891 202 79 0 7 208 3 204 1.98e-90 267
MS.gene63300.t1 MTR_7g063270 48.837 258 80 4 10 264 7 215 1.79e-78 237
MS.gene63300.t1 MTR_4g132850 32.787 244 159 4 21 263 9 248 2.20e-31 117
MS.gene63300.t1 MTR_3g085740 32.099 243 160 4 25 265 81 320 8.95e-30 114
MS.gene63300.t1 MTR_7g071680 32.847 274 148 7 19 264 29 294 8.06e-29 111
MS.gene63300.t1 MTR_7g094520 31.154 260 161 8 15 263 7 259 7.19e-26 102
MS.gene63300.t1 MTR_7g094510 30.435 253 162 7 19 262 6 253 7.36e-26 102
MS.gene63300.t1 MTR_4g052350 32.000 250 163 6 19 265 14 259 5.53e-25 100
MS.gene63300.t1 MTR_1196s0010 31.818 242 154 5 24 262 279 512 1.70e-24 102
MS.gene63300.t1 MTR_4g058810 27.586 261 176 9 18 268 10 267 7.03e-23 95.1
MS.gene63300.t1 MTR_4g052320 29.600 250 170 5 19 265 8 254 2.22e-22 93.6
MS.gene63300.t1 MTR_4g058840 28.462 260 173 9 19 268 11 267 2.38e-22 93.6
MS.gene63300.t1 MTR_4g058820 28.462 260 173 9 19 268 11 267 2.38e-22 93.6
MS.gene63300.t1 MTR_4g052300 29.200 250 170 6 19 265 8 253 8.59e-22 92.0
MS.gene63300.t1 MTR_7g107670 28.731 268 173 8 10 266 26 286 2.72e-21 91.3
MS.gene63300.t1 MTR_7g083870 31.047 277 165 9 6 264 19 287 7.79e-21 90.1
MS.gene63300.t1 MTR_4g078630 29.344 259 164 8 19 264 19 271 8.42e-21 89.7
MS.gene63300.t1 MTR_4g052340 28.030 264 166 8 19 267 14 268 9.73e-21 89.4
MS.gene63300.t1 MTR_8g442750 29.545 264 155 8 19 263 14 265 3.16e-20 88.6
MS.gene63300.t1 MTR_5g098650 80.392 51 10 0 225 275 124 174 7.56e-20 84.7
MS.gene63300.t1 MTR_3g020670 31.136 273 169 11 5 264 4 270 1.76e-18 83.2
MS.gene63300.t1 MTR_4g131740 28.794 257 171 6 18 265 39 292 2.10e-18 83.2
MS.gene63300.t1 MTR_1g068955 29.070 258 158 9 19 261 14 261 2.74e-17 80.1
MS.gene63300.t1 MTR_6g023990 28.736 261 174 8 11 263 6 262 5.21e-17 79.0
MS.gene63300.t1 MTR_7g110130 28.295 258 174 8 16 266 3 256 9.60e-16 75.5
MS.gene63300.t1 MTR_1g082760 26.357 258 177 7 19 267 40 293 1.17e-15 75.5
MS.gene63300.t1 MTR_3g068075 52.239 67 31 1 127 192 1 67 1.77e-15 70.5
MS.gene63300.t1 MTR_7g105460 27.798 277 176 11 10 274 4 268 2.16e-15 74.7
MS.gene63300.t1 MTR_6g023590 28.854 253 168 8 19 263 13 261 2.38e-15 74.3
MS.gene63300.t1 MTR_4g058830 29.747 158 105 5 116 268 57 213 2.70e-15 73.6
MS.gene63300.t1 MTR_1g051165 25.670 261 182 7 19 267 14 274 4.85e-15 73.6
MS.gene63300.t1 MTR_2g090165 28.794 257 173 9 16 266 3 255 1.69e-14 72.0
MS.gene63300.t1 MTR_1579s0020 36.364 88 55 1 185 272 1 87 1.78e-14 67.8
MS.gene63300.t1 MTR_6g023950 28.854 253 168 8 19 263 13 261 2.22e-14 71.6
MS.gene63300.t1 MTR_7g105580 25.806 248 160 6 19 262 8 235 4.04e-14 70.9
MS.gene63300.t1 MTR_7g105590 28.497 193 129 6 14 203 5 191 6.67e-14 68.9
MS.gene63300.t1 MTR_6g023600 29.249 253 167 8 19 263 13 261 2.40e-13 68.6
MS.gene63300.t1 MTR_8g089575 28.972 214 141 6 21 227 47 256 3.31e-13 68.9
MS.gene63300.t1 MTR_7g110140 27.099 262 181 8 16 271 3 260 1.11e-11 63.9
MS.gene63300.t1 MTR_8g044240 26.087 184 129 4 19 196 69 251 3.35e-11 63.2
MS.gene63300.t1 MTR_7g105570 25.229 218 147 8 66 274 15 225 6.24e-11 61.2
MS.gene63300.t1 MTR_3g113870 26.667 180 126 4 32 209 34 209 7.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63300.t1 AT5G06060 65.637 259 89 0 15 273 5 263 1.59e-132 375
MS.gene63300.t1 AT2G29260 61.719 256 98 0 15 270 64 319 2.82e-120 347
MS.gene63300.t1 AT2G29290 62.403 258 95 1 15 270 3 260 3.80e-119 342
MS.gene63300.t1 AT1G07440 61.240 258 97 2 15 270 8 264 1.89e-118 340
MS.gene63300.t1 AT1G07450 62.598 254 94 1 15 268 4 256 7.58e-118 338
MS.gene63300.t1 AT2G29150 60.227 264 102 2 9 270 6 268 5.78e-116 334
MS.gene63300.t1 AT2G29360 60.385 260 103 0 9 268 6 265 7.67e-115 331
MS.gene63300.t1 AT2G29350 61.660 253 96 1 16 268 12 263 2.67e-113 327
MS.gene63300.t1 AT2G29340 57.308 260 109 1 15 272 3 262 1.03e-111 323
MS.gene63300.t1 AT2G29340 57.752 258 107 1 15 270 3 260 6.04e-111 323
MS.gene63300.t1 AT2G29370 58.846 260 107 0 9 268 6 265 1.50e-110 320
MS.gene63300.t1 AT2G29330 58.915 258 104 1 15 270 3 260 1.56e-110 320
MS.gene63300.t1 AT2G29300 58.301 259 105 2 15 270 3 261 3.38e-109 317
MS.gene63300.t1 AT2G29310 57.752 258 107 1 15 270 3 260 2.07e-108 315
MS.gene63300.t1 AT2G30670 59.055 254 104 0 15 268 3 256 7.37e-108 313
MS.gene63300.t1 AT2G29320 58.555 263 94 4 17 270 11 267 1.02e-107 313
MS.gene63300.t1 AT2G29290 60.924 238 91 1 35 270 6 243 4.89e-106 308
MS.gene63300.t1 AT2G29300 57.708 253 106 1 15 266 3 255 1.82e-105 308
MS.gene63300.t1 AT2G29350 60.889 225 87 1 44 268 2 225 7.89e-98 286
MS.gene63300.t1 AT2G29320 57.143 245 90 4 35 270 11 249 1.33e-96 284
MS.gene63300.t1 AT2G29310 56.303 238 102 1 35 270 21 258 3.18e-95 281
MS.gene63300.t1 AT2G29350 63.731 193 70 0 16 208 12 204 1.67e-88 263
MS.gene63300.t1 AT2G29340 56.701 194 84 0 15 208 3 196 3.03e-81 243
MS.gene63300.t1 AT2G29340 56.701 194 84 0 15 208 3 196 3.03e-81 243
MS.gene63300.t1 AT2G29310 58.247 194 81 0 15 208 3 196 4.02e-80 240
MS.gene63300.t1 AT2G29320 58.115 191 79 1 17 206 11 201 3.41e-78 236
MS.gene63300.t1 AT1G07440 60.494 162 64 0 15 176 8 169 1.97e-71 217
MS.gene63300.t1 AT2G29310 56.322 174 76 0 35 208 21 194 5.78e-67 207
MS.gene63300.t1 AT2G29170 64.444 90 32 0 16 105 13 102 1.06e-38 131
MS.gene63300.t1 AT5G18210 33.721 258 154 8 18 263 7 259 4.18e-31 116
MS.gene63300.t1 AT3G03980 32.472 271 162 8 8 262 3 268 2.15e-30 115
MS.gene63300.t1 AT4G05530 32.520 246 161 5 19 263 9 250 3.80e-30 114
MS.gene63300.t1 AT4G13180 32.707 266 165 7 9 265 3 263 2.34e-29 112
MS.gene63300.t1 AT1G24360 29.851 268 177 5 3 265 58 319 1.54e-27 108
MS.gene63300.t1 AT5G18210 33.750 240 142 8 18 245 7 241 8.12e-27 105
MS.gene63300.t1 AT1G63380 29.344 259 171 8 19 267 19 275 1.88e-23 97.1
MS.gene63300.t1 AT1G63380 29.344 259 171 8 19 267 17 273 2.16e-23 96.7
MS.gene63300.t1 AT1G63380 29.344 259 171 8 19 267 15 271 2.22e-23 96.7
MS.gene63300.t1 AT3G04000 31.008 258 162 8 19 262 14 269 2.64e-23 96.3
MS.gene63300.t1 AT1G63380 29.344 259 171 8 19 267 22 278 3.13e-23 96.7
MS.gene63300.t1 AT3G46170 28.016 257 176 6 19 267 26 281 1.88e-22 94.4
MS.gene63300.t1 AT1G54870 30.859 256 164 7 19 265 82 333 2.77e-22 94.7
MS.gene63300.t1 AT1G54870 30.859 256 164 7 19 265 84 335 3.27e-22 94.7
MS.gene63300.t1 AT1G62610 27.132 258 178 7 19 267 13 269 3.32e-22 93.6
MS.gene63300.t1 AT1G62610 27.132 258 178 7 19 267 15 271 3.43e-22 93.6
MS.gene63300.t1 AT1G62610 27.132 258 178 7 19 267 14 270 3.82e-22 93.2
MS.gene63300.t1 AT1G62610 27.132 258 178 7 19 267 19 275 3.86e-22 93.6
MS.gene63300.t1 AT3G55310 28.682 258 173 8 19 267 17 272 6.99e-22 92.8
MS.gene63300.t1 AT3G55290 28.736 261 169 9 19 267 18 273 1.14e-21 92.0
MS.gene63300.t1 AT3G55290 28.736 261 169 9 19 267 17 272 1.15e-21 92.0
MS.gene63300.t1 AT3G51680 28.571 266 168 7 19 264 32 295 3.18e-21 91.3
MS.gene63300.t1 AT3G05260 29.020 255 169 6 19 265 37 287 1.81e-20 89.0
MS.gene63300.t1 AT2G17845 26.515 264 176 9 19 268 47 306 2.02e-19 86.7
MS.gene63300.t1 AT3G26760 27.099 262 172 6 19 266 36 292 2.61e-19 85.9
MS.gene63300.t1 AT3G12800 26.482 253 174 6 21 263 12 262 3.99e-19 85.5
MS.gene63300.t1 AT1G52340 30.534 262 162 9 19 264 18 275 5.46e-17 79.3
MS.gene63300.t1 AT4G03140 26.172 256 175 7 19 264 78 329 9.43e-17 79.3
MS.gene63300.t1 AT3G26770 27.692 260 171 6 19 266 41 295 6.40e-16 76.6
MS.gene63300.t1 AT2G47120 26.255 259 177 9 19 271 6 256 1.35e-15 75.1
MS.gene63300.t1 AT2G47120 26.255 259 177 9 19 271 7 257 1.36e-15 75.1
MS.gene63300.t1 AT3G42960 27.969 261 156 8 24 264 13 261 8.02e-15 73.2
MS.gene63300.t1 AT2G47130 26.587 252 176 7 19 265 6 253 1.27e-14 72.4
MS.gene63300.t1 AT3G06060 28.125 192 129 3 24 211 42 228 7.03e-14 70.9
MS.gene63300.t1 AT3G06060 28.125 192 129 3 24 211 59 245 8.04e-14 70.9
MS.gene63300.t1 AT5G04900 28.780 205 136 7 2 200 61 261 3.99e-13 68.9
MS.gene63300.t1 AT3G47350 28.037 214 143 6 18 226 43 250 7.55e-13 67.8
MS.gene63300.t1 AT3G47350 28.037 214 143 6 18 226 43 250 1.20e-12 67.4
MS.gene63300.t1 AT5G19200 26.471 204 141 3 25 224 41 239 3.78e-12 65.9
MS.gene63300.t1 AT3G03330 26.131 199 138 4 10 201 32 228 8.31e-12 65.1
MS.gene63300.t1 AT1G24470 27.228 202 136 6 15 209 46 243 1.56e-11 63.9
MS.gene63300.t1 AT1G49670 29.126 206 129 8 21 212 6 208 2.70e-11 63.9
MS.gene63300.t1 AT1G49670 29.126 206 129 8 21 212 6 208 3.20e-11 63.9
MS.gene63300.t1 AT5G10050 29.508 183 122 4 25 206 11 187 6.95e-11 62.0

Find 60 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGGTGGCACTCGTGGAAT+CGG 0.347184 3.3:+60405689 MS.gene63300:CDS
TGGAAGCCACTTGTTGAATA+AGG 0.356666 3.3:-60406202 None:intergenic
TATCCTCTTCTAAAAGAATC+TGG 0.356990 3.3:+60407157 MS.gene63300:CDS
ATGTTCTACAAGTGGGGTTC+TGG 0.364231 3.3:-60407446 None:intergenic
ACCCGAAGAGGTCTCCTCTT+TGG 0.381912 3.3:+60408083 MS.gene63300:CDS
GTGTTCATTTCATCTGTTGC+AGG 0.395569 3.3:+60407193 MS.gene63300:CDS
GGACAAGTTATTTGTGTTGA+TGG 0.402356 3.3:+60408144 MS.gene63300:CDS
ATCTCATGTAATTCTCATGC+TGG 0.418009 3.3:-60408193 None:intergenic
CTTCTAAAAGAATCTGGAAA+TGG 0.429287 3.3:+60407163 MS.gene63300:CDS
GTTGCAGGTGTGGTTAGCTT+AGG 0.435339 3.3:+60407208 MS.gene63300:CDS
CACCAAAGAGGAGACCTCTT+CGG 0.436189 3.3:-60408085 None:intergenic
TCAATAAGTGCTTACAAGAA+TGG 0.438266 3.3:+60406114 MS.gene63300:CDS
GATATGCAAGTTGGCACAAA+TGG 0.442938 3.3:-60407138 None:intergenic
CAAGTGGCTTCCACTTTCAA+TGG 0.445054 3.3:+60406212 MS.gene63300:CDS
GGTTCGGCAATGCGCTTAAG+AGG 0.448812 3.3:-60408063 None:intergenic
TGAATAAGGCTCTCTCTTTG+TGG 0.452558 3.3:-60406188 None:intergenic
AGAGGAGACCTCTTCGGGTT+CGG 0.459507 3.3:-60408079 None:intergenic
GTGAATGATCTAGTTGCATT+TGG 0.466081 3.3:+60406053 MS.gene63300:CDS
GGAATGACAGCTCTTGTAAC+CGG 0.471184 3.3:+60405671 MS.gene63300:CDS
TGCAACTAGATCATTCACTA+TGG 0.473158 3.3:-60406048 None:intergenic
ACCAAAGAGGAGACCTCTTC+GGG 0.477426 3.3:-60408084 None:intergenic
TCAGCAGTGTACTCAATGGT+TGG 0.489827 3.3:-60407073 None:intergenic
ATTTCAAAATCAAAAGTTTG+TGG 0.490723 3.3:+60408020 MS.gene63300:CDS
GTTGTCTATTGCCCATTCAC+AGG 0.493489 3.3:-60407392 None:intergenic
CTACTGTACACACTTGTTCA+AGG 0.495979 3.3:+60406078 MS.gene63300:CDS
AATGGGCAATAGACAACATA+AGG 0.496335 3.3:+60407398 MS.gene63300:CDS
GGTGTGGTTAGCTTAGGTAC+TGG 0.499150 3.3:+60407214 MS.gene63300:CDS
TTCTTCAGCAGTGTACTCAA+TGG 0.499815 3.3:-60407077 None:intergenic
GACAAGTTATTTGTGTTGAT+GGG 0.502183 3.3:+60408145 MS.gene63300:CDS
CCGGTGGCACTCGTGGAATC+GGG 0.504977 3.3:+60405690 MS.gene63300:CDS
GTTGAGCTTGCCATTGAAAG+TGG 0.515168 3.3:-60406222 None:intergenic
CATTTCATCTGTTGCAGGTG+TGG 0.515366 3.3:+60407198 MS.gene63300:CDS
CTTGTAACCGGTGGCACTCG+TGG 0.521899 3.3:+60405683 MS.gene63300:CDS
CCCGATTCCACGAGTGCCAC+CGG 0.529955 3.3:-60405690 None:intergenic
GGACAGAGATGGTCTCTCAC+TGG 0.538298 3.3:+60405650 MS.gene63300:CDS
TCTGTCTACGCAGCAAGTAA+AGG 0.541483 3.3:+60407238 MS.gene63300:CDS
CCTGCTGCATCTTACATCAC+TGG 0.543937 3.3:+60408123 MS.gene63300:CDS
AAATTACATGTTCTACAAGT+GGG 0.546415 3.3:-60407453 None:intergenic
TTAGAAGAGGATATGCAAGT+TGG 0.555015 3.3:-60407147 None:intergenic
TTACAAGAATGGCAAAGTAA+AGG 0.555353 3.3:+60406125 MS.gene63300:CDS
AGTGGGGTTCTGGTTGCCCA+TGG 0.559899 3.3:-60407436 None:intergenic
GAGCAATTGTGTTGTACCAT+GGG 0.560513 3.3:+60407420 MS.gene63300:CDS
GAAACACATAGCAGCAGAGG+TGG 0.561832 3.3:+60405629 MS.gene63300:CDS
AGAGAGCCTTATTCAACAAG+TGG 0.562362 3.3:+60406196 MS.gene63300:CDS
AAAATTACATGTTCTACAAG+TGG 0.573526 3.3:-60407454 None:intergenic
TCTCATGTAATTCTCATGCT+GGG 0.575912 3.3:-60408192 None:intergenic
GGAGCAATTGTGTTGTACCA+TGG 0.576420 3.3:+60407419 MS.gene63300:CDS
GCGCATTGCCGAACCCGAAG+AGG 0.578494 3.3:+60408071 MS.gene63300:CDS
GCAGCAGAGGTGGACAGAGA+TGG 0.586161 3.3:+60405639 MS.gene63300:CDS
GTAGAAACACATAGCAGCAG+AGG 0.588040 3.3:+60405626 MS.gene63300:CDS
CGGTCTGTGATGTAAGCTCT+CGG 0.593629 3.3:+60406165 MS.gene63300:CDS
CAAGTTATTTGTGTTGATGG+GGG 0.602087 3.3:+60408147 MS.gene63300:CDS
ATGCTTTAGGTAAATAACGT+GGG 0.610168 3.3:+60407034 MS.gene63300:intron
CCAGTGATGTAAGATGCAGC+AGG 0.631919 3.3:-60408123 None:intergenic
ACAAGTTATTTGTGTTGATG+GGG 0.632558 3.3:+60408146 MS.gene63300:CDS
AAGATGCAGCAGGTAAGCAA+AGG 0.634488 3.3:-60408113 None:intergenic
TATGCTTTAGGTAAATAACG+TGG 0.635045 3.3:+60407033 MS.gene63300:intron
AATTACATGTTCTACAAGTG+GGG 0.636533 3.3:-60407452 None:intergenic
GCAAAGGAAAGTCACCAAAG+AGG 0.638884 3.3:-60408097 None:intergenic
ATGACAGCTCTTGTAACCGG+TGG 0.671270 3.3:+60405674 MS.gene63300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAGTAAGTT+AGG - chr3.3:60407487-60407506 None:intergenic 10.0%
!! AAAAAAAAAAAAGTAAGTTA+GGG - chr3.3:60407486-60407505 None:intergenic 10.0%
!! TAAAATAGTAATTATTTGTA+AGG - chr3.3:60406687-60406706 None:intergenic 10.0%
!! TTATTAATGATTTATATGTT+TGG - chr3.3:60406270-60406289 None:intergenic 10.0%
!! ACTCTTTATAATTAAGTTAA+TGG - chr3.3:60406432-60406451 None:intergenic 15.0%
!! TAGATAATACTATAAAATGT+TGG - chr3.3:60405945-60405964 None:intergenic 15.0%
!! TATTATGTATCCATATTTAT+TGG - chr3.3:60407552-60407571 None:intergenic 15.0%
!!! CTTACTTTTTTTTTTTTTGA+AGG + chr3.3:60407489-60407508 MS.gene63300:intron 15.0%
!!! TATTTACATTTTTTCATTCA+TGG + chr3.3:60407859-60407878 MS.gene63300:intron 15.0%
!! AAAATACACATAAAACTCAA+AGG - chr3.3:60407628-60407647 None:intergenic 20.0%
!! AAATAATGAAATAAGAGAGA+AGG - chr3.3:60405729-60405748 None:intergenic 20.0%
!! AATAATGAAATAAGAGAGAA+GGG - chr3.3:60405728-60405747 None:intergenic 20.0%
!! ATTTCAAAATCAAAAGTTTG+TGG + chr3.3:60408020-60408039 MS.gene63300:CDS 20.0%
!! CAAAATAAAATAATGATGCA+GGG - chr3.3:60405767-60405786 None:intergenic 20.0%
!! TAATCAGCTTACAAAAAATT+TGG + chr3.3:60407369-60407388 MS.gene63300:CDS 20.0%
!! TCAAAATAAAATAATGATGC+AGG - chr3.3:60405768-60405787 None:intergenic 20.0%
!!! AAAAGATAAGGAAGTATTTT+TGG - chr3.3:60405796-60405815 None:intergenic 20.0%
!!! TTGGATAATTTTGAAGATAA+AGG - chr3.3:60406609-60406628 None:intergenic 20.0%
!!! TTTTTTGTTCAAACTAACAA+TGG + chr3.3:60407945-60407964 MS.gene63300:intron 20.0%
! AAAATTACATGTTCTACAAG+TGG - chr3.3:60407457-60407476 None:intergenic 25.0%
! AAATTACATGTTCTACAAGT+GGG - chr3.3:60407456-60407475 None:intergenic 25.0%
! ACCTTAAGAGAGTTTATAAA+CGG + chr3.3:60406577-60406596 MS.gene63300:intron 25.0%
! ATAATGAAATAAGAGAGAAG+GGG - chr3.3:60405727-60405746 None:intergenic 25.0%
! ATTATAAAGAGTGATGACAA+TGG + chr3.3:60406440-60406459 MS.gene63300:intron 25.0%
! CTTAAGCAGATTACATAAAA+AGG - chr3.3:60406735-60406754 None:intergenic 25.0%
! TCTGCTTATGATTGATTATA+TGG + chr3.3:60407771-60407790 MS.gene63300:intron 25.0%
! TTATAAAGAGTGATGACAAT+GGG + chr3.3:60406441-60406460 MS.gene63300:intron 25.0%
! TTGAAGGAAACTTACTTATT+TGG + chr3.3:60407505-60407524 MS.gene63300:intron 25.0%
! TTTGCATGAATTTATGCTTT+AGG + chr3.3:60407021-60407040 MS.gene63300:intron 25.0%
!! ACTAGACATATCAAAAGTTT+TGG - chr3.3:60406881-60406900 None:intergenic 25.0%
!!! CATATTTATTGGTTCTATGT+GGG - chr3.3:60407541-60407560 None:intergenic 25.0%
!!! CGTTTAAATGTTTTTACACA+CGG + chr3.3:60405841-60405860 MS.gene63300:intron 25.0%
AAAAAATTTGGCCTGTGAAT+GGG + chr3.3:60407381-60407400 MS.gene63300:CDS 30.0%
AAACGACGCTAATCTTAAAA+CGG - chr3.3:60405826-60405845 None:intergenic 30.0%
AATTACATGTTCTACAAGTG+GGG - chr3.3:60407455-60407474 None:intergenic 30.0%
AATTGCAGCTGAAAATTCAA+TGG - chr3.3:60407350-60407369 None:intergenic 30.0%
ACCAACACTACAACATAATT+GGG + chr3.3:60405864-60405883 MS.gene63300:intron 30.0%
ACCGTTTATAAACTCTCTTA+AGG - chr3.3:60406581-60406600 None:intergenic 30.0%
ATTCATTTGACACATTCTCT+AGG + chr3.3:60406021-60406040 MS.gene63300:intron 30.0%
CAACAAAAATCAGGAAGAAA+CGG - chr3.3:60406816-60406835 None:intergenic 30.0%
CCACATAGAACCAATAAATA+TGG + chr3.3:60407539-60407558 MS.gene63300:intron 30.0%
CTATTGGACTAAGTTTGAAT+TGG + chr3.3:60406337-60406356 MS.gene63300:intron 30.0%
TAGAGAATGTGTCAAATGAA+TGG - chr3.3:60406022-60406041 None:intergenic 30.0%
TCAATAAGTGCTTACAAGAA+TGG + chr3.3:60406114-60406133 MS.gene63300:CDS 30.0%
TTACAAGAATGGCAAAGTAA+AGG + chr3.3:60406125-60406144 MS.gene63300:CDS 30.0%
TTCAGGAATCAACAAAAATC+AGG - chr3.3:60406825-60406844 None:intergenic 30.0%
! ACAAGTTATTTGTGTTGATG+GGG + chr3.3:60408146-60408165 MS.gene63300:CDS 30.0%
! ATGCTTTAGGTAAATAACGT+GGG + chr3.3:60407034-60407053 MS.gene63300:intron 30.0%
! ATGGCAAAGTAAAGGATTTT+CGG + chr3.3:60406133-60406152 MS.gene63300:CDS 30.0%
! ATTCCTATCTTCAAGTTCAA+TGG + chr3.3:60407894-60407913 MS.gene63300:intron 30.0%
! ATTGTTGACTGTTCTATTCA+TGG + chr3.3:60406300-60406319 MS.gene63300:intron 30.0%
! CTTCTAAAAGAATCTGGAAA+TGG + chr3.3:60407163-60407182 MS.gene63300:CDS 30.0%
! GACAAGTTATTTGTGTTGAT+GGG + chr3.3:60408145-60408164 MS.gene63300:CDS 30.0%
! GTAAGTACATTGTTTAGAGT+CGG + chr3.3:60406899-60406918 MS.gene63300:intron 30.0%
! TATCCTCTTCTAAAAGAATC+TGG + chr3.3:60407157-60407176 MS.gene63300:CDS 30.0%
! TATGCTTTAGGTAAATAACG+TGG + chr3.3:60407033-60407052 MS.gene63300:intron 30.0%
! TTGATCAATGTTTAGAGTTG+AGG + chr3.3:60406779-60406798 MS.gene63300:intron 30.0%
!! CAAGTTTGTTATGGACTTAT+GGG - chr3.3:60406508-60406527 None:intergenic 30.0%
!! CATAGGTTTGTTGATAGTAA+AGG + chr3.3:60406360-60406379 MS.gene63300:intron 30.0%
!! CCATATTTATTGGTTCTATG+TGG - chr3.3:60407542-60407561 None:intergenic 30.0%
!! TCAAGTTTGTTATGGACTTA+TGG - chr3.3:60406509-60406528 None:intergenic 30.0%
!! TCACTATTTGACTTGATGTT+TGG - chr3.3:60406628-60406647 None:intergenic 30.0%
!! TTTCCAGATTCTTTTAGAAG+AGG - chr3.3:60407163-60407182 None:intergenic 30.0%
!!! GGTGTTATCTTTTTTCAATG+TGG - chr3.3:60406560-60406579 None:intergenic 30.0%
AATGGGCAATAGACAACATA+AGG + chr3.3:60407398-60407417 MS.gene63300:CDS 35.0%
CAAAAAATTTGGCCTGTGAA+TGG + chr3.3:60407380-60407399 MS.gene63300:CDS 35.0%
GAATGTGTCAAATGAATGGA+TGG - chr3.3:60406018-60406037 None:intergenic 35.0%
GACCAACACTACAACATAAT+TGG + chr3.3:60405863-60405882 MS.gene63300:intron 35.0%
GACTAAGTTTGAATTGGCAT+AGG + chr3.3:60406343-60406362 MS.gene63300:intron 35.0%
GGACAAGTTATTTGTGTTGA+TGG + chr3.3:60408144-60408163 MS.gene63300:CDS 35.0%
GGATCTATGCAGAAAACTAT+TGG + chr3.3:60406321-60406340 MS.gene63300:intron 35.0%
GTGAATGATCTAGTTGCATT+TGG + chr3.3:60406053-60406072 MS.gene63300:CDS 35.0%
TAGATCCAAATGATGAGTTC+AGG - chr3.3:60406842-60406861 None:intergenic 35.0%
TCATAAGCAGACATTACAGA+TGG - chr3.3:60407762-60407781 None:intergenic 35.0%
TCCCAATTATGTTGTAGTGT+TGG - chr3.3:60405868-60405887 None:intergenic 35.0%
TGATTCCTGAACTCATCATT+TGG + chr3.3:60406834-60406853 MS.gene63300:intron 35.0%
TGCAACTAGATCATTCACTA+TGG - chr3.3:60406051-60406070 None:intergenic 35.0%
TGTCCATTGAACTTGAAGAT+AGG - chr3.3:60407900-60407919 None:intergenic 35.0%
TTAGAAGAGGATATGCAAGT+TGG - chr3.3:60407150-60407169 None:intergenic 35.0%
! AGTAAAGGATTTTCGGTTAC+TGG + chr3.3:60406140-60406159 MS.gene63300:CDS 35.0%
! CAAACTTGAGTTGTTGCTAT+TGG + chr3.3:60406520-60406539 MS.gene63300:intron 35.0%
! CAAGTTATTTGTGTTGATGG+GGG + chr3.3:60408147-60408166 MS.gene63300:CDS 35.0%
!! GCAACAACTCAAGTTTGTTA+TGG - chr3.3:60406517-60406536 None:intergenic 35.0%
!! TGGACTAGCAGTAAATTGTT+AGG + chr3.3:60407791-60407810 MS.gene63300:intron 35.0%
AACGGAGGGAGTAAAAGATA+AGG - chr3.3:60405808-60405827 None:intergenic 40.0%
AGTCGGATGTCATTCAACAA+TGG + chr3.3:60406916-60406935 MS.gene63300:intron 40.0%
CTACTGTACACACTTGTTCA+AGG + chr3.3:60406078-60406097 MS.gene63300:CDS 40.0%
GACGCTAATCTTAAAACGGA+GGG - chr3.3:60405822-60405841 None:intergenic 40.0%
GAGCAATTGTGTTGTACCAT+GGG + chr3.3:60407420-60407439 MS.gene63300:CDS 40.0%
GGTAGAGCTCTTTAGTAACA+CGG - chr3.3:60405924-60405943 None:intergenic 40.0%
GTCGGATGTCATTCAACAAT+GGG + chr3.3:60406917-60406936 MS.gene63300:intron 40.0%
GTGTTCATTTCATCTGTTGC+AGG + chr3.3:60407193-60407212 MS.gene63300:CDS 40.0%
TGAATAAGGCTCTCTCTTTG+TGG - chr3.3:60406191-60406210 None:intergenic 40.0%
TTCTTCAGCAGTGTACTCAA+TGG - chr3.3:60407080-60407099 None:intergenic 40.0%
! AGGATTTTCGGTTACTGGAT+CGG + chr3.3:60406145-60406164 MS.gene63300:CDS 40.0%
! GATATGCAAGTTGGCACAAA+TGG - chr3.3:60407141-60407160 None:intergenic 40.0%
! TGGAAGCCACTTGTTGAATA+AGG - chr3.3:60406205-60406224 None:intergenic 40.0%
!! AGAGAGCCTTATTCAACAAG+TGG + chr3.3:60406196-60406215 MS.gene63300:CDS 40.0%
AAGATGCAGCAGGTAAGCAA+AGG - chr3.3:60408116-60408135 None:intergenic 45.0%
ATGTTCTACAAGTGGGGTTC+TGG - chr3.3:60407449-60407468 None:intergenic 45.0%
CAAGTGGCTTCCACTTTCAA+TGG + chr3.3:60406212-60406231 MS.gene63300:CDS 45.0%
CATTTCATCTGTTGCAGGTG+TGG + chr3.3:60407198-60407217 MS.gene63300:CDS 45.0%
CGACGCTAATCTTAAAACGG+AGG - chr3.3:60405823-60405842 None:intergenic 45.0%
GAGTGATGACAATGGGAAAG+TGG + chr3.3:60406448-60406467 MS.gene63300:intron 45.0%
GATGGGGGATTAACTGTGTT+TGG + chr3.3:60408162-60408181 MS.gene63300:CDS 45.0%
GCAAAGGAAAGTCACCAAAG+AGG - chr3.3:60408100-60408119 None:intergenic 45.0%
GGAATGACAGCTCTTGTAAC+CGG + chr3.3:60405671-60405690 MS.gene63300:CDS 45.0%
GGAGCAATTGTGTTGTACCA+TGG + chr3.3:60407419-60407438 MS.gene63300:CDS 45.0%
GTAGAAACACATAGCAGCAG+AGG + chr3.3:60405626-60405645 MS.gene63300:CDS 45.0%
GTTGAGCTTGCCATTGAAAG+TGG - chr3.3:60406225-60406244 None:intergenic 45.0%
GTTGTCTATTGCCCATTCAC+AGG - chr3.3:60407395-60407414 None:intergenic 45.0%
TCAGCAGTGTACTCAATGGT+TGG - chr3.3:60407076-60407095 None:intergenic 45.0%
TCTGTCTACGCAGCAAGTAA+AGG + chr3.3:60407238-60407257 MS.gene63300:CDS 45.0%
!! CAAAAATTAAAAAAAAATAT+TGG - chr3.3:60407995-60408014 None:intergenic 5.0%
ACCAAAGAGGAGACCTCTTC+GGG - chr3.3:60408087-60408106 None:intergenic 50.0%
ATGACAGCTCTTGTAACCGG+TGG + chr3.3:60405674-60405693 MS.gene63300:CDS 50.0%
CACCAAAGAGGAGACCTCTT+CGG - chr3.3:60408088-60408107 None:intergenic 50.0%
CCAGTGATGTAAGATGCAGC+AGG - chr3.3:60408126-60408145 None:intergenic 50.0%
CCTGCTGCATCTTACATCAC+TGG + chr3.3:60408123-60408142 MS.gene63300:CDS 50.0%
CGGTCTGTGATGTAAGCTCT+CGG + chr3.3:60406165-60406184 MS.gene63300:CDS 50.0%
GAAACACATAGCAGCAGAGG+TGG + chr3.3:60405629-60405648 MS.gene63300:CDS 50.0%
!! GGTGTGGTTAGCTTAGGTAC+TGG + chr3.3:60407214-60407233 MS.gene63300:CDS 50.0%
!! GTTGCAGGTGTGGTTAGCTT+AGG + chr3.3:60407208-60407227 MS.gene63300:CDS 50.0%
ACCCGAAGAGGTCTCCTCTT+TGG + chr3.3:60408083-60408102 MS.gene63300:CDS 55.0%
GGACAGAGATGGTCTCTCAC+TGG + chr3.3:60405650-60405669 MS.gene63300:CDS 55.0%
GGTTCGGCAATGCGCTTAAG+AGG - chr3.3:60408066-60408085 None:intergenic 55.0%
! AGAGGAGACCTCTTCGGGTT+CGG - chr3.3:60408082-60408101 None:intergenic 55.0%
ACCGGTGGCACTCGTGGAAT+CGG + chr3.3:60405689-60405708 MS.gene63300:CDS 60.0%
CTTGTAACCGGTGGCACTCG+TGG + chr3.3:60405683-60405702 MS.gene63300:CDS 60.0%
GCAGCAGAGGTGGACAGAGA+TGG + chr3.3:60405639-60405658 MS.gene63300:CDS 60.0%
! AGTGGGGTTCTGGTTGCCCA+TGG - chr3.3:60407439-60407458 None:intergenic 60.0%
CCCGATTCCACGAGTGCCAC+CGG - chr3.3:60405693-60405712 None:intergenic 65.0%
CCGGTGGCACTCGTGGAATC+GGG + chr3.3:60405690-60405709 MS.gene63300:CDS 65.0%
GCGCATTGCCGAACCCGAAG+AGG + chr3.3:60408071-60408090 MS.gene63300:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 60405611 60408212 60405611 ID=MS.gene63300
chr3.3 mRNA 60405611 60408212 60405611 ID=MS.gene63300.t1;Parent=MS.gene63300
chr3.3 exon 60405611 60405711 60405611 ID=MS.gene63300.t1.exon1;Parent=MS.gene63300.t1
chr3.3 CDS 60405611 60405711 60405611 ID=cds.MS.gene63300.t1;Parent=MS.gene63300.t1
chr3.3 exon 60406043 60406250 60406043 ID=MS.gene63300.t1.exon2;Parent=MS.gene63300.t1
chr3.3 CDS 60406043 60406250 60406043 ID=cds.MS.gene63300.t1;Parent=MS.gene63300.t1
chr3.3 exon 60407043 60407259 60407043 ID=MS.gene63300.t1.exon3;Parent=MS.gene63300.t1
chr3.3 CDS 60407043 60407259 60407043 ID=cds.MS.gene63300.t1;Parent=MS.gene63300.t1
chr3.3 exon 60407362 60407468 60407362 ID=MS.gene63300.t1.exon4;Parent=MS.gene63300.t1
chr3.3 CDS 60407362 60407468 60407362 ID=cds.MS.gene63300.t1;Parent=MS.gene63300.t1
chr3.3 exon 60408018 60408212 60408018 ID=MS.gene63300.t1.exon5;Parent=MS.gene63300.t1
chr3.3 CDS 60408018 60408212 60408018 ID=cds.MS.gene63300.t1;Parent=MS.gene63300.t1
Gene Sequence

>MS.gene63300

ATGGCAGCAGCAGCAGTAGAAACACATAGCAGCAGAGGTGGACAGAGATGGTCTCTCACTGGAATGACAGCTCTTGTAACCGGTGGCACTCGTGGAATCGGGTTTTTATCACTCCCCTTCTCTCTTATTTCATTATTTATCTTATCTTCAACACCCTGCATCATTATTTTATTTTGATCTAGCCAAAAATACTTCCTTATCTTTTACTCCCTCCGTTTTAAGATTAGCGTCGTTTAAATGTTTTTACACACGGACCAACACTACAACATAATTGGGATCTAGTTACATTCGAACAATTGTTAAGTAAAATCCGTGTTACTAAAGAGCTCTACCAACATTTTATAGTATTATCTATCAGTAAGTTATTCAAAGAGATGACACTTTTATTAAGAATAGATTTTAATCCATCCATTCATTTGACACATTCTCTAGGCATGCCATAGTGAATGATCTAGTTGCATTTGGTGCTACTGTACACACTTGTTCAAGGACTGAATCAGAGCTCAATAAGTGCTTACAAGAATGGCAAAGTAAAGGATTTTCGGTTACTGGATCGGTCTGTGATGTAAGCTCTCGGCCACAAAGAGAGAGCCTTATTCAACAAGTGGCTTCCACTTTCAATGGCAAGCTCAACATCTTTGTAAGTACTCATTGTGCCAAACATATAAATCATTAATAAGAAAATATGCATTGTTGACTGTTCTATTCATGGATCTATGCAGAAAACTATTGGACTAAGTTTGAATTGGCATAGGTTTGTTGATAGTAAAGGCTTGAATTGAGTAGTAGTGTATGTTGTACTTTGAATTCAACTTGATCCATTAACTTAATTATAAAGAGTGATGACAATGGGAAAGTGGATAATATCTATGCTGCAACACTGTAAACACTTCTCCCATAAGTCCATAACAAACTTGAGTTGTTGCTATTGGAAAAAACGTAAGTTCCACATTGAAAAAAGATAACACCTTAAGAGAGTTTATAAACGGTAATATCCTTTATCTTCAAAATTATCCAAACATCAAGTCAAATAGTGAAAAGAGTTTGTAAATACTAAACAGTGACATATCTTACCTTACAAATAATTACTATTTTACTTCATCTGTTATCTTACATTTTATCCTTTTTATGTAATCTGCTTAAGATTTTTGTTTAAAAATTATACTAGTTGATCAATGTTTAGAGTTGAGGTCAACAACAAACCGTTTCTTCCTGATTTTTGTTGATTCCTGAACTCATCATTTGGATCTAGTTATTTAATATTTCTCCAAAACTTTTGATATGTCTAGTAAGTACATTGTTTAGAGTCGGATGTCATTCAACAATGGGTGCAGTCTGCAAATGATGCTTATGCGATGAGATAAATTTACAGCAGAAATTAATGAATCACTTTGCTATGAATCATACATATTTGCATGAATTTATGCTTTAGGTAAATAACGTGGGATCAAACTTTAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCAGAGCTAATGACAATTAATTTAGACTCATCATTCCATTTGTGCCAACTTGCATATCCTCTTCTAAAAGAATCTGGAAATGGTAGCATTGTGTTCATTTCATCTGTTGCAGGTGTGGTTAGCTTAGGTACTGGATCTGTCTACGCAGCAAGTAAAGGTGAGTGCTACACTCATTAGTTCTTTTATTTTTTTCATGTAAATGTGATTAATAAAATGTTACGATTAAACGACAATTGTGTTTCATCCATTGAATTTTCAGCTGCAATTAATCAGCTTACAAAAAATTTGGCCTGTGAATGGGCAATAGACAACATAAGGAGCAATTGTGTTGTACCATGGGCAACCAGAACCCCACTTGTAGAACATGTAATTTTCTTGCTCCCTAACTTACTTTTTTTTTTTTTGAAGGAAACTTACTTATTTGGTTGATTGAATCCCACATAGAACCAATAAATATGGATACATAATAATACTCAAAAAAATTATATTTAGACGTCAAAATTTGATGTCAAATACGAGTGTCCTTTGAGTTTTATGTGTATTTTTAAAATGTGTGTAAGTTGTAGAAAATAAAAAAGAAATAGAGATAAACATATACGATGTCGCATATAGTAACTGTATTTTGATGTTCAAATATAATTTCTTTAGTATTATTACCATCTGTAATGTCTGCTTATGATTGATTATATGGACTAGCAGTAAATTGTTAGGATAGCATAAATTTAAATATAGTGTTTTTGAATTGATTGTGTCTAATATTTACATTTTTTCATTCATGGAAATACATGACTATTCCTATCTTCAAGTTCAATGGACATTCTTCATACTCTATCAAGCAAATCTTTTTTGTTCAAACTAACAATGGATGTCTCTTGTCTATGTGTTTGATCCAATATTTTTTTTTAATTTTTGTAGTTATTTCAAAATCAAAAGTTTGTGGATGATATTATGTCTCGAACTCCTCTTAAGCGCATTGCCGAACCCGAAGAGGTCTCCTCTTTGGTGACTTTCCTTTGCTTACCTGCTGCATCTTACATCACTGGACAAGTTATTTGTGTTGATGGGGGATTAACTGTGTTTGGATTTCAACCCAGCATGAGAATTACATGA

Protein sequence

>MS.gene63300.t1

MAAAAVETHSSRGGQRWSLTGMTALVTGGTRGIGHAIVNDLVAFGATVHTCSRTESELNKCLQEWQSKGFSVTGSVCDVSSRPQRESLIQQVASTFNGKLNIFVNNVGSNFRKPTIEYTAEEYSELMTINLDSSFHLCQLAYPLLKESGNGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAIDNIRSNCVVPWATRTPLVEHLFQNQKFVDDIMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGFQPSMRIT