AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008161

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008161.t1 MTR_3g068070 96.283 269 10 0 1 269 1 269 0.0 535
MS.gene008161.t1 MTR_3g068085 88.636 264 30 0 1 264 1 264 1.50e-168 467
MS.gene008161.t1 MTR_3g068065 84.400 250 39 0 15 264 17 266 5.88e-158 440
MS.gene008161.t1 MTR_3g068155 74.131 259 67 0 6 264 10 268 9.24e-146 409
MS.gene008161.t1 MTR_3g068175 70.611 262 76 1 4 264 5 266 4.29e-139 392
MS.gene008161.t1 MTR_3g068175 69.549 266 76 2 4 264 5 270 5.73e-137 387
MS.gene008161.t1 MTR_4g064883 62.598 254 95 0 12 265 11 264 7.81e-126 358
MS.gene008161.t1 MTR_4g064887 58.397 262 109 0 1 262 1 262 1.08e-116 335
MS.gene008161.t1 MTR_7g063320 58.113 265 107 1 1 261 1 265 7.90e-111 320
MS.gene008161.t1 MTR_7g063270 58.779 262 105 1 2 260 3 264 4.89e-108 313
MS.gene008161.t1 MTR_7g063260 57.795 263 107 1 2 260 3 265 2.85e-106 309
MS.gene008161.t1 MTR_7g063330 57.795 263 108 2 1 260 1 263 1.14e-105 307
MS.gene008161.t1 MTR_7g063390 56.439 264 111 2 2 261 3 266 1.16e-105 307
MS.gene008161.t1 MTR_7g063360 57.576 264 108 2 2 261 3 266 2.09e-105 307
MS.gene008161.t1 MTR_4g064883 63.636 198 72 0 12 209 11 208 1.93e-96 282
MS.gene008161.t1 MTR_4g064887 59.330 209 85 0 1 209 1 209 2.96e-91 269
MS.gene008161.t1 MTR_7g063270 48.855 262 82 3 2 260 3 215 1.19e-78 237
MS.gene008161.t1 MTR_4g132850 33.740 246 158 4 15 259 7 248 2.69e-36 130
MS.gene008161.t1 MTR_7g094510 33.202 253 157 7 15 259 6 254 2.87e-32 119
MS.gene008161.t1 MTR_7g094520 33.203 256 153 8 15 259 11 259 2.95e-31 117
MS.gene008161.t1 MTR_3g085740 31.707 246 157 6 21 261 81 320 9.37e-30 114
MS.gene008161.t1 MTR_7g071680 32.000 275 149 8 15 260 29 294 1.30e-28 110
MS.gene008161.t1 MTR_4g058810 31.418 261 166 9 14 264 10 267 1.61e-27 107
MS.gene008161.t1 MTR_4g058840 30.769 260 167 9 15 264 11 267 9.17e-26 102
MS.gene008161.t1 MTR_4g058820 30.769 260 167 9 15 264 11 267 9.17e-26 102
MS.gene008161.t1 MTR_7g083870 30.350 257 164 7 15 260 35 287 2.40e-24 99.8
MS.gene008161.t1 MTR_1196s0010 32.114 246 154 6 18 259 277 513 8.11e-24 100
MS.gene008161.t1 MTR_4g078630 30.303 264 155 9 15 260 19 271 1.06e-22 94.7
MS.gene008161.t1 MTR_4g052350 31.034 261 168 9 15 269 14 268 3.60e-22 93.2
MS.gene008161.t1 MTR_7g107670 28.077 260 173 6 11 260 29 284 1.05e-21 92.4
MS.gene008161.t1 MTR_4g052340 29.183 257 171 7 15 265 14 265 1.14e-21 91.7
MS.gene008161.t1 MTR_4g052320 29.297 256 171 7 15 264 8 259 1.60e-21 91.3
MS.gene008161.t1 MTR_8g442750 27.734 256 170 6 15 259 14 265 3.87e-20 88.2
MS.gene008161.t1 MTR_1g068955 30.385 260 164 9 15 263 14 267 8.67e-20 86.7
MS.gene008161.t1 MTR_4g052300 30.268 261 161 9 15 264 8 258 8.73e-20 86.7
MS.gene008161.t1 MTR_4g131740 31.203 266 153 8 15 262 40 293 9.45e-20 87.0
MS.gene008161.t1 MTR_3g020670 30.385 260 162 9 15 260 16 270 1.10e-19 86.7
MS.gene008161.t1 MTR_4g058830 32.558 172 109 6 98 264 44 213 7.47e-18 80.1
MS.gene008161.t1 MTR_1g051165 27.652 264 173 12 15 263 14 274 1.20e-17 80.9
MS.gene008161.t1 MTR_6g023990 28.044 271 170 11 1 259 5 262 2.53e-17 79.7
MS.gene008161.t1 MTR_7g105590 29.570 186 124 4 15 197 8 189 2.56e-17 78.2
MS.gene008161.t1 MTR_7g105460 28.137 263 177 7 6 261 4 261 7.65e-17 78.6
MS.gene008161.t1 MTR_7g105580 25.954 262 170 5 8 265 1 242 9.90e-17 77.8
MS.gene008161.t1 MTR_3g068075 74.000 50 12 1 123 171 1 50 1.02e-16 73.6
MS.gene008161.t1 MTR_1g082760 29.070 258 170 7 15 263 40 293 1.62e-16 77.8
MS.gene008161.t1 MTR_7g110140 29.961 257 170 8 11 261 2 254 2.25e-16 77.0
MS.gene008161.t1 MTR_6g023590 26.692 266 177 10 5 259 3 261 3.12e-16 76.6
MS.gene008161.t1 MTR_6g023610 27.715 267 173 9 5 259 3 261 1.13e-15 75.1
MS.gene008161.t1 MTR_8g089575 31.313 198 127 5 17 207 47 242 1.51e-15 75.5
MS.gene008161.t1 MTR_2g090165 27.547 265 166 7 11 261 2 254 2.80e-15 73.9
MS.gene008161.t1 MTR_7g110130 27.481 262 171 9 11 261 2 255 4.05e-15 73.6
MS.gene008161.t1 MTR_7g110160 28.846 260 151 9 11 261 2 236 2.71e-14 70.9
MS.gene008161.t1 MTR_6g023600 27.473 273 166 10 5 259 3 261 3.64e-14 70.9
MS.gene008161.t1 MTR_4g134660 32.948 173 107 4 18 184 9 178 1.06e-13 69.3
MS.gene008161.t1 MTR_8g044240 28.571 203 129 6 15 205 69 267 4.70e-13 68.6
MS.gene008161.t1 MTR_6g041980 32.515 163 91 5 11 168 60 208 5.75e-13 67.4
MS.gene008161.t1 MTR_7g105570 29.143 175 115 4 94 261 46 218 5.95e-13 67.0
MS.gene008161.t1 MTR_3g113870 26.667 180 126 3 28 205 34 209 1.72e-12 65.9
MS.gene008161.t1 MTR_6g041980 32.515 163 91 5 11 168 60 208 1.95e-12 66.6
MS.gene008161.t1 MTR_1275s0010 29.060 117 83 0 139 255 259 375 4.42e-12 66.2
MS.gene008161.t1 MTR_6g023600 27.106 273 161 10 5 259 3 255 6.41e-12 64.3
MS.gene008161.t1 MTR_3g087850 25.316 237 150 6 21 237 32 261 5.20e-11 62.4
MS.gene008161.t1 MTR_3g098470 33.333 144 93 3 12 154 29 170 5.88e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008161.t1 AT5G06060 70.543 258 76 0 12 269 6 263 1.69e-139 393
MS.gene008161.t1 AT2G29260 63.636 253 92 0 12 264 65 317 4.23e-120 346
MS.gene008161.t1 AT2G29360 61.686 261 100 0 5 265 6 266 1.99e-116 335
MS.gene008161.t1 AT2G29290 61.024 254 99 0 12 265 4 257 5.16e-115 331
MS.gene008161.t1 AT1G07450 60.078 258 102 1 8 265 1 257 3.65e-114 329
MS.gene008161.t1 AT2G29350 62.353 255 95 1 11 265 11 264 1.64e-113 327
MS.gene008161.t1 AT1G07440 60.236 254 100 1 12 265 9 261 8.04e-113 325
MS.gene008161.t1 AT2G29150 60.920 261 101 1 5 265 6 265 1.93e-112 325
MS.gene008161.t1 AT2G29330 60.392 255 99 2 12 265 4 257 2.75e-109 317
MS.gene008161.t1 AT2G30670 58.661 254 105 0 12 265 4 257 7.37e-109 315
MS.gene008161.t1 AT2G29370 56.391 266 115 1 1 265 1 266 1.56e-108 315
MS.gene008161.t1 AT2G29340 57.087 254 109 0 12 265 4 257 1.06e-106 310
MS.gene008161.t1 AT2G29340 57.087 254 109 0 12 265 4 257 4.64e-106 310
MS.gene008161.t1 AT2G29310 57.874 254 107 0 12 265 4 257 1.93e-105 306
MS.gene008161.t1 AT2G29320 56.757 259 111 1 8 265 6 264 3.59e-104 304
MS.gene008161.t1 AT2G29290 59.829 234 94 0 32 265 7 240 2.51e-102 298
MS.gene008161.t1 AT2G29300 55.686 255 112 1 12 265 4 258 2.62e-101 296
MS.gene008161.t1 AT2G29300 55.200 250 111 1 12 260 4 253 1.51e-97 288
MS.gene008161.t1 AT2G29350 61.062 226 87 1 40 265 2 226 2.10e-97 285
MS.gene008161.t1 AT2G29320 56.780 236 101 1 31 265 11 246 4.83e-94 277
MS.gene008161.t1 AT2G29310 57.021 235 101 0 31 265 21 255 7.05e-94 277
MS.gene008161.t1 AT2G29350 63.402 194 71 0 11 204 11 204 1.54e-86 257
MS.gene008161.t1 AT2G29310 57.576 198 84 0 12 209 4 201 2.58e-78 236
MS.gene008161.t1 AT2G29340 55.556 198 88 0 12 209 4 201 1.56e-77 234
MS.gene008161.t1 AT2G29340 55.556 198 88 0 12 209 4 201 1.56e-77 234
MS.gene008161.t1 AT2G29320 55.838 197 86 1 8 203 6 202 8.00e-76 229
MS.gene008161.t1 AT1G07440 60.248 161 64 0 12 172 9 169 1.70e-69 212
MS.gene008161.t1 AT2G29310 56.425 179 78 0 31 209 21 199 1.59e-66 206
MS.gene008161.t1 AT2G29170 58.824 102 41 1 1 101 1 102 9.55e-35 121
MS.gene008161.t1 AT5G18210 33.962 265 156 9 8 259 1 259 3.16e-34 124
MS.gene008161.t1 AT4G05530 33.740 246 158 5 15 259 9 250 3.16e-34 124
MS.gene008161.t1 AT3G03980 33.829 269 159 9 6 259 5 269 1.56e-33 123
MS.gene008161.t1 AT4G13180 33.579 271 162 10 1 261 1 263 7.72e-32 118
MS.gene008161.t1 AT5G18210 33.824 272 147 11 8 266 1 252 8.81e-31 116
MS.gene008161.t1 AT1G24360 30.769 247 158 8 21 261 80 319 1.14e-27 108
MS.gene008161.t1 AT3G04000 32.584 267 164 8 6 258 5 269 3.24e-27 106
MS.gene008161.t1 AT3G55310 30.142 282 179 13 1 267 1 279 8.05e-26 103
MS.gene008161.t1 AT3G55290 30.855 269 164 12 15 267 17 279 2.65e-25 101
MS.gene008161.t1 AT3G55290 30.855 269 164 12 15 267 18 280 2.87e-25 101
MS.gene008161.t1 AT3G46170 29.845 258 170 8 15 263 26 281 6.98e-25 100
MS.gene008161.t1 AT2G17845 29.771 262 170 7 15 264 47 306 5.15e-24 99.0
MS.gene008161.t1 AT3G51680 29.643 280 173 8 1 260 20 295 7.92e-24 98.2
MS.gene008161.t1 AT1G63380 28.723 282 184 11 1 267 1 280 1.34e-23 97.1
MS.gene008161.t1 AT1G63380 29.323 266 173 9 15 267 15 278 1.77e-23 96.7
MS.gene008161.t1 AT1G63380 29.323 266 173 9 15 267 19 282 1.86e-23 97.1
MS.gene008161.t1 AT1G63380 28.958 259 172 8 15 263 22 278 2.66e-23 96.7
MS.gene008161.t1 AT3G26760 29.502 261 163 8 15 260 36 290 2.77e-23 96.7
MS.gene008161.t1 AT1G54870 32.576 264 153 8 15 263 82 335 3.33e-23 97.1
MS.gene008161.t1 AT1G54870 32.576 264 153 8 15 263 84 337 3.71e-23 97.1
MS.gene008161.t1 AT1G52340 31.061 264 158 8 15 260 18 275 6.28e-23 95.5
MS.gene008161.t1 AT1G62610 27.799 259 175 8 15 263 13 269 1.03e-22 94.7
MS.gene008161.t1 AT1G62610 28.195 266 176 9 15 267 15 278 1.04e-22 94.7
MS.gene008161.t1 AT1G62610 28.195 266 176 9 15 267 14 277 1.15e-22 94.7
MS.gene008161.t1 AT1G62610 28.195 266 176 9 15 267 19 282 1.28e-22 94.7
MS.gene008161.t1 AT2G47130 30.651 261 166 9 8 261 1 253 8.47e-22 91.7
MS.gene008161.t1 AT3G05260 33.074 257 158 7 15 262 37 288 1.71e-20 89.0
MS.gene008161.t1 AT2G47120 29.008 262 168 11 8 261 1 252 4.47e-20 87.0
MS.gene008161.t1 AT2G47120 28.627 255 166 10 15 261 7 253 1.05e-19 86.3
MS.gene008161.t1 AT3G12800 25.391 256 177 5 15 259 10 262 1.10e-19 87.0
MS.gene008161.t1 AT4G03140 26.236 263 166 6 15 260 78 329 6.22e-19 85.5
MS.gene008161.t1 AT3G42960 29.730 259 158 9 18 260 11 261 1.30e-18 83.6
MS.gene008161.t1 AT3G26770 26.966 267 174 7 15 267 41 300 5.62e-17 79.3
MS.gene008161.t1 AT3G29260 29.389 262 168 9 8 261 1 253 5.90e-17 78.6
MS.gene008161.t1 AT3G29250 28.517 263 174 8 7 261 36 292 1.33e-16 78.2
MS.gene008161.t1 AT2G47140 28.897 263 169 11 8 261 1 254 2.71e-16 76.6
MS.gene008161.t1 AT3G29250 29.008 262 170 9 8 261 1 254 2.01e-15 74.3
MS.gene008161.t1 AT3G29250 28.897 263 171 9 7 261 36 290 2.70e-15 74.7
MS.gene008161.t1 AT5G04900 30.357 224 134 10 21 229 83 299 1.67e-14 72.8
MS.gene008161.t1 AT4G13250 26.641 259 151 8 18 243 162 414 2.87e-14 72.8
MS.gene008161.t1 AT1G10310 32.143 168 111 3 18 184 18 183 3.85e-14 70.5
MS.gene008161.t1 AT3G47350 29.534 193 125 6 17 204 46 232 5.47e-14 71.2
MS.gene008161.t1 AT3G47350 29.534 193 125 6 17 204 46 232 7.74e-14 70.5
MS.gene008161.t1 AT1G24470 28.000 200 135 6 17 210 52 248 2.15e-13 69.3
MS.gene008161.t1 AT3G03330 29.016 193 128 5 12 197 38 228 4.94e-13 68.6
MS.gene008161.t1 AT5G65205 29.444 180 116 6 21 197 12 183 7.87e-13 67.4
MS.gene008161.t1 AT5G10050 26.702 191 133 3 21 210 11 195 1.47e-12 66.6
MS.gene008161.t1 AT3G06060 26.733 202 141 2 9 207 31 228 3.95e-12 65.9
MS.gene008161.t1 AT3G06060 26.733 202 141 2 9 207 48 245 4.30e-12 65.9
MS.gene008161.t1 AT4G09750 33.544 158 86 5 15 167 41 184 4.33e-12 65.5
MS.gene008161.t1 AT1G49670 29.439 214 124 7 17 211 6 211 8.81e-12 65.5
MS.gene008161.t1 AT1G49670 29.439 214 124 7 17 211 6 211 9.01e-12 65.5
MS.gene008161.t1 AT3G47360 30.208 192 123 6 18 204 48 233 1.33e-11 63.9
MS.gene008161.t1 AT1G67730 27.638 199 131 7 17 206 51 245 2.02e-11 63.5
MS.gene008161.t1 AT4G20760 30.317 221 124 9 16 211 62 277 5.29e-11 62.4
MS.gene008161.t1 AT4G20760 30.317 221 124 9 16 211 42 257 6.10e-11 62.0

Find 47 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTCTTCTTAAAGAATC+TGG 0.311673 3.4:-69094646 MS.gene008161:CDS
AATGGGCAAAAGACAATATA+AGG 0.317797 3.4:-69094409 MS.gene008161:CDS
GTTTCTGCTATACGCTTTAT+CGG 0.318496 3.4:+69093877 None:intergenic
TGCCTCTCATGCTGCTCTCT+TGG 0.339487 3.4:+69095846 None:intergenic
GGAAAGTCTGCTCTAGTTAC+TGG 0.355585 3.4:-69095806 MS.gene008161:CDS
GGACAAACTGTTTCTGTTGA+TGG 0.363679 3.4:-69093796 MS.gene008161:CDS
CTTCTTAAAGAATCTGGAAA+TGG 0.409640 3.4:-69094640 MS.gene008161:CDS
TCGGCTGTATACTCAATTGT+TGG 0.433889 3.4:+69094730 None:intergenic
ACTCACTGCATAGATGCTTC+CGG 0.439791 3.4:+69094570 None:intergenic
TGCATTCCATCTATGTCAAC+TGG 0.450264 3.4:-69094671 MS.gene008161:CDS
GATGGAGGATTTACTGTGAA+TGG 0.451398 3.4:-69093778 MS.gene008161:CDS
AAAAGTGATGACTACTAACT+TGG 0.463013 3.4:-69094698 MS.gene008161:CDS
ACTGGTGGAACTCGTGGAAT+CGG 0.476543 3.4:-69095788 MS.gene008161:CDS
GTGGAGGAACTAGCTGAGTT+TGG 0.479590 3.4:-69095755 MS.gene008161:CDS
TTTCCAGATTCTTTAAGAAG+AGG 0.503369 3.4:+69094643 None:intergenic
AACCAAGAGAGCAGCATGAG+AGG 0.505029 3.4:-69095848 MS.gene008161:CDS
CCAGCTGCTTCCTACATCAC+TGG 0.520639 3.4:-69093817 MS.gene008161:CDS
CAAGTTGCTTCTGCTTTCAA+CGG 0.524543 3.4:-69095596 MS.gene008161:CDS
CTTAAATGAGTGGAAAGAGA+AGG 0.530669 3.4:-69095684 MS.gene008161:CDS
AGCATCTATGCAGTGAGTAA+AGG 0.540433 3.4:-69094565 MS.gene008161:intron
CTAGTTACTGGTGGAACTCG+TGG 0.541240 3.4:-69095794 MS.gene008161:CDS
AGCTATTAGGTAAACAATGC+TGG 0.541729 3.4:-69094769 MS.gene008161:intron
TTAAATGAGTGGAAAGAGAA+GGG 0.543808 3.4:-69095683 MS.gene008161:CDS
AACAGTTTGTCCAGTGATGT+AGG 0.560729 3.4:+69093807 None:intergenic
AGGCACAAGATGGTCTCTCA+AGG 0.570614 3.4:-69095828 MS.gene008161:CDS
GATGTGCCAGTTGACATAGA+TGG 0.576163 3.4:+69094665 None:intergenic
CCACAGTGTACACTTGCTCT+AGG 0.579593 3.4:-69095730 MS.gene008161:CDS
AATCGGTCATGCTGTGGTGG+AGG 0.580717 3.4:-69095771 MS.gene008161:CDS
ATAAGCTCCTCTCTTTGAGA+AGG 0.588037 3.4:+69095623 None:intergenic
CCAGTGATGTAGGAAGCAGC+TGG 0.588298 3.4:+69093817 None:intergenic
ATCTTCTCCTTCTCAAAGAG+AGG 0.595566 3.4:-69095630 MS.gene008161:CDS
GCAGCATGAGAGGCACAAGA+TGG 0.597950 3.4:-69095838 MS.gene008161:CDS
TCTCTGATAAGCGTAGGTAC+CGG 0.606028 3.4:-69094589 MS.gene008161:CDS
AACACATGAAGTGTCTGCCT+TGG 0.606041 3.4:-69093857 MS.gene008161:CDS
TGGAATCGGTCATGCTGTGG+TGG 0.606109 3.4:-69095774 MS.gene008161:CDS
CAAACTGTTTCTGTTGATGG+AGG 0.607479 3.4:-69093793 MS.gene008161:CDS
AAGTCTGCTCTAGTTACTGG+TGG 0.609393 3.4:-69095803 MS.gene008161:CDS
AGGAAGCAGCTGGCAGACAA+AGG 0.611292 3.4:+69093827 None:intergenic
TGAGCAAATGCTTAAATGAG+TGG 0.614861 3.4:-69095694 MS.gene008161:CDS
GTTGCATCTCTGATAAGCGT+AGG 0.625038 3.4:-69094595 MS.gene008161:CDS
GGAGCAACTGTGTTGCACCC+TGG 0.628385 3.4:-69094388 MS.gene008161:CDS
TCGTGGAATCGGTCATGCTG+TGG 0.634799 3.4:-69095777 MS.gene008161:CDS
GGCACAAGATGGTCTCTCAA+GGG 0.644640 3.4:-69095827 MS.gene008161:CDS
ACAATGCTGGTACAAATGTG+AGG 0.662281 3.4:-69094756 MS.gene008161:CDS
GCTTATCAGAGATGCAACAG+AGG 0.677312 3.4:+69094600 None:intergenic
CAGACAAAGGAAAGTCACCA+AGG 0.716868 3.4:+69093840 None:intergenic
CCTAGAGCAAGTGTACACTG+TGG 0.805980 3.4:+69095730 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAACATAATATAGAAA+CGG + chr3.4:69094088-69094107 None:intergenic 20.0%
!! GAAAACGAAATATATAGAAA+AGG + chr3.4:69094066-69094085 None:intergenic 20.0%
!! TTCATAAAGAAAAAATGACA+AGG + chr3.4:69095314-69095333 None:intergenic 20.0%
!!! TACTATTTTATTTTTTCACC+AGG + chr3.4:69094497-69094516 None:intergenic 20.0%
! ATAGTAGAAGTTATAGAAGA+AGG - chr3.4:69094511-69094530 MS.gene008161:intron 25.0%
! ATCTGTAGTATTAATCCAAA+TGG - chr3.4:69095616-69095635 MS.gene008161:CDS 25.0%
! CTAATGCATTATAACTCTAA+CGG - chr3.4:69094424-69094443 MS.gene008161:CDS 25.0%
! TGTGCTAGTTGAAAATAATT+TGG + chr3.4:69094256-69094275 None:intergenic 25.0%
!! CTTGTTATAAGACTTTCTTA+TGG - chr3.4:69094717-69094736 MS.gene008161:CDS 25.0%
!! TGATTTGTATGTTTGTCTTA+AGG - chr3.4:69094298-69094317 MS.gene008161:intron 25.0%
!!! ATGTTTTAAGATTTTCTTCC+TGG - chr3.4:69094476-69094495 MS.gene008161:intron 25.0%
!!! CATCACTTTTGAATAATCTT+CGG + chr3.4:69094902-69094921 None:intergenic 25.0%
AAAAAGTCTTGCTTGTGAAT+GGG - chr3.4:69095184-69095203 MS.gene008161:intron 30.0%
AAAAGTGATGACTACTAACT+TGG - chr3.4:69094912-69094931 MS.gene008161:intron 30.0%
AACCGAAATCATGTATTAGT+AGG - chr3.4:69095473-69095492 MS.gene008161:intron 30.0%
AATGGGCAAAAGACAATATA+AGG - chr3.4:69095201-69095220 MS.gene008161:intron 30.0%
ACCTTTAATTATCCATTCTC+TGG - chr3.4:69095288-69095307 MS.gene008161:intron 30.0%
AGCCTACTAATACATGATTT+CGG + chr3.4:69095478-69095497 None:intergenic 30.0%
CAGCAAAAATTAAAATGCAG+AGG + chr3.4:69095558-69095577 None:intergenic 30.0%
CTTATAACAACCTTAGCATA+GGG + chr3.4:69094576-69094595 None:intergenic 30.0%
CTTCTTAAAGAATCTGGAAA+TGG - chr3.4:69094970-69094989 MS.gene008161:intron 30.0%
TGATAATCTTGTGAGCTATT+AGG - chr3.4:69094828-69094847 MS.gene008161:intron 30.0%
TGTTATGTTCAGAACTTATG+TGG - chr3.4:69095642-69095661 MS.gene008161:CDS 30.0%
TTAAATGAGTGGAAAGAGAA+GGG - chr3.4:69093927-69093946 MS.gene008161:intron 30.0%
TTAGCAATAAACTGCAAGAA+AGG + chr3.4:69095679-69095698 None:intergenic 30.0%
! TGCATTCTTTTGATGTACTT+TGG - chr3.4:69094694-69094713 MS.gene008161:CDS 30.0%
! TTTCCAGATTCTTTAAGAAG+AGG + chr3.4:69094970-69094989 None:intergenic 30.0%
!! TTACTGTGAATGGATTTTCT+GGG - chr3.4:69095842-69095861 MS.gene008161:CDS 30.0%
!! TTTACTGTGAATGGATTTTC+TGG - chr3.4:69095841-69095860 MS.gene008161:CDS 30.0%
!!! GAGAAGGGTTTTTTTGTTTA+TGG - chr3.4:69093942-69093961 MS.gene008161:intron 30.0%
!!! GGGTTTTTTTGTTTATGGAT+CGG - chr3.4:69093947-69093966 MS.gene008161:intron 30.0%
AAATCAAGTGCGTGTAAGAT+TGG + chr3.4:69094643-69094662 None:intergenic 35.0%
AATCAATTTGTAGATGCTCG+TGG - chr3.4:69094193-69094212 MS.gene008161:intron 35.0%
AGCTATTAGGTAAACAATGC+TGG - chr3.4:69094841-69094860 MS.gene008161:intron 35.0%
CAAAAAGTCTTGCTTGTGAA+TGG - chr3.4:69095183-69095202 MS.gene008161:intron 35.0%
CATCCTCTTCTTAAAGAATC+TGG - chr3.4:69094964-69094983 MS.gene008161:intron 35.0%
CCTATGCTAAGGTTGTTATA+AGG - chr3.4:69094574-69094593 MS.gene008161:CDS 35.0%
CCTTATAACAACCTTAGCAT+AGG + chr3.4:69094577-69094596 None:intergenic 35.0%
CTGAACATAACATTGCCATT+TGG + chr3.4:69095634-69095653 None:intergenic 35.0%
CTTAAATGAGTGGAAAGAGA+AGG - chr3.4:69093926-69093945 MS.gene008161:intron 35.0%
GCCAGAGAATGGATAATTAA+AGG + chr3.4:69095292-69095311 None:intergenic 35.0%
GTATTATTGAATCGCAACGT+AGG + chr3.4:69095368-69095387 None:intergenic 35.0%
GTTTCTGCTATACGCTTTAT+CGG + chr3.4:69095736-69095755 None:intergenic 35.0%
TACCAGAAACAAGACGAAAA+AGG + chr3.4:69094771-69094790 None:intergenic 35.0%
TGAGCAAATGCTTAAATGAG+TGG - chr3.4:69093916-69093935 MS.gene008161:CDS 35.0%
! GATGTTGAATTTTGCATAGC+TGG - chr3.4:69094109-69094128 MS.gene008161:intron 35.0%
!! TAAAATGCAGAGGCATCATA+TGG + chr3.4:69095548-69095567 None:intergenic 35.0%
!!! AGTTCACTTTTTGAGTGTGT+TGG - chr3.4:69094393-69094412 MS.gene008161:CDS 35.0%
AAAATGACAAGGCCAGAGAA+TGG + chr3.4:69095303-69095322 None:intergenic 40.0%
AACAGTTTGTCCAGTGATGT+AGG + chr3.4:69095806-69095825 None:intergenic 40.0%
ACAATGCTGGTACAAATGTG+AGG - chr3.4:69094854-69094873 MS.gene008161:intron 40.0%
AGCATCTATGCAGTGAGTAA+AGG - chr3.4:69095045-69095064 MS.gene008161:intron 40.0%
ATCTTCTCCTTCTCAAAGAG+AGG - chr3.4:69093980-69093999 MS.gene008161:intron 40.0%
ATGCTCGTGGAAAACTTAGT+TGG - chr3.4:69094206-69094225 MS.gene008161:intron 40.0%
CAAGTTGCTTCTGCTTTCAA+CGG - chr3.4:69094014-69094033 MS.gene008161:intron 40.0%
GATGGAGGATTTACTGTGAA+TGG - chr3.4:69095832-69095851 MS.gene008161:CDS 40.0%
GTATACAAAAACGTCGCTTG+TGG - chr3.4:69095244-69095263 MS.gene008161:intron 40.0%
TCGGCTGTATACTCAATTGT+TGG + chr3.4:69094883-69094902 None:intergenic 40.0%
TGATTTCGGTTGCATGAATC+AGG + chr3.4:69095464-69095483 None:intergenic 40.0%
TGCAGTGAGTAAAGGTAACT+TGG - chr3.4:69095053-69095072 MS.gene008161:intron 40.0%
TGCATTCCATCTATGTCAAC+TGG - chr3.4:69094939-69094958 MS.gene008161:intron 40.0%
! AAGCGACGTTTTTGTATACC+AGG + chr3.4:69095243-69095262 None:intergenic 40.0%
! AGCGACGTTTTTGTATACCA+GGG + chr3.4:69095242-69095261 None:intergenic 40.0%
! ATAAGCTCCTCTCTTTGAGA+AGG + chr3.4:69093990-69094009 None:intergenic 40.0%
!! ACACGCACTTGATTTTCAAG+TGG - chr3.4:69094648-69094667 MS.gene008161:CDS 40.0%
!! CAAACTGTTTCTGTTGATGG+AGG - chr3.4:69095817-69095836 MS.gene008161:CDS 40.0%
!! GGACAAACTGTTTCTGTTGA+TGG - chr3.4:69095814-69095833 MS.gene008161:CDS 40.0%
!!! CACCTTTTTCGTCTTGTTTC+TGG - chr3.4:69094766-69094785 MS.gene008161:intron 40.0%
AAAAACGTCGCTTGTGGAAC+AGG - chr3.4:69095250-69095269 MS.gene008161:intron 45.0%
AAGTCTGCTCTAGTTACTGG+TGG - chr3.4:69093807-69093826 MS.gene008161:CDS 45.0%
ACTCACTGCATAGATGCTTC+CGG + chr3.4:69095043-69095062 None:intergenic 45.0%
ATGCATCCGAAACACGATCA+TGG - chr3.4:69095414-69095433 MS.gene008161:intron 45.0%
CAGACAAAGGAAAGTCACCA+AGG + chr3.4:69095773-69095792 None:intergenic 45.0%
GATGTGCCAGTTGACATAGA+TGG + chr3.4:69094948-69094967 None:intergenic 45.0%
GCTTATCAGAGATGCAACAG+AGG + chr3.4:69095013-69095032 None:intergenic 45.0%
GGAAAGTCTGCTCTAGTTAC+TGG - chr3.4:69093804-69093823 MS.gene008161:CDS 45.0%
GTTGCATCTCTGATAAGCGT+AGG - chr3.4:69095015-69095034 MS.gene008161:intron 45.0%
TCTCTGATAAGCGTAGGTAC+CGG - chr3.4:69095021-69095040 MS.gene008161:intron 45.0%
TGCATCCGAAACACGATCAT+GGG - chr3.4:69095415-69095434 MS.gene008161:intron 45.0%
! AACACATGAAGTGTCTGCCT+TGG - chr3.4:69095753-69095772 MS.gene008161:CDS 45.0%
!! AATGCAGAGGCATCATATGG+TGG + chr3.4:69095545-69095564 None:intergenic 45.0%
AACCAAGAGAGCAGCATGAG+AGG - chr3.4:69093762-69093781 MS.gene008161:CDS 50.0%
ACGAGCCCATGATCGTGTTT+CGG + chr3.4:69095423-69095442 None:intergenic 50.0%
ACTGGTGGAACTCGTGGAAT+CGG - chr3.4:69093822-69093841 MS.gene008161:CDS 50.0%
AGGCACAAGATGGTCTCTCA+AGG - chr3.4:69093782-69093801 MS.gene008161:CDS 50.0%
AGTGCGTGTAAGATTGGCGA+CGG + chr3.4:69094637-69094656 None:intergenic 50.0%
CCACAGTGTACACTTGCTCT+AGG - chr3.4:69093880-69093899 MS.gene008161:CDS 50.0%
CCTAGAGCAAGTGTACACTG+TGG + chr3.4:69093883-69093902 None:intergenic 50.0%
CTAGTTACTGGTGGAACTCG+TGG - chr3.4:69093816-69093835 MS.gene008161:CDS 50.0%
GAGAGCTTGTCCCTATGCTA+AGG - chr3.4:69094563-69094582 MS.gene008161:intron 50.0%
GGCACAAGATGGTCTCTCAA+GGG - chr3.4:69093783-69093802 MS.gene008161:CDS 50.0%
GTGGAGGAACTAGCTGAGTT+TGG - chr3.4:69093855-69093874 MS.gene008161:CDS 50.0%
TCACTGTGTGTGTGTGTGTG+AGG + chr3.4:69094545-69094564 None:intergenic 50.0%
AATCGGTCATGCTGTGGTGG+AGG - chr3.4:69093839-69093858 MS.gene008161:CDS 55.0%
AGGAAGCAGCTGGCAGACAA+AGG + chr3.4:69095786-69095805 None:intergenic 55.0%
CCAGCTGCTTCCTACATCAC+TGG - chr3.4:69095793-69095812 MS.gene008161:CDS 55.0%
CCAGTGATGTAGGAAGCAGC+TGG + chr3.4:69095796-69095815 None:intergenic 55.0%
CTGCTTACTCCACCTAGCGA+GGG - chr3.4:69094597-69094616 MS.gene008161:CDS 55.0%
GAAACACGATCATGGGCTCG+TGG - chr3.4:69095422-69095441 MS.gene008161:intron 55.0%
TCGTGGAATCGGTCATGCTG+TGG - chr3.4:69093833-69093852 MS.gene008161:CDS 55.0%
TGCCTCTCATGCTGCTCTCT+TGG + chr3.4:69093767-69093786 None:intergenic 55.0%
TGGAATCGGTCATGCTGTGG+TGG - chr3.4:69093836-69093855 MS.gene008161:CDS 55.0%
! GCAGCATGAGAGGCACAAGA+TGG - chr3.4:69093772-69093791 MS.gene008161:CDS 55.0%
GCTGCTTACTCCACCTAGCG+AGG - chr3.4:69094596-69094615 MS.gene008161:CDS 60.0%
GGAGCAACTGTGTTGCACCC+TGG - chr3.4:69095222-69095241 MS.gene008161:intron 60.0%
TCATGGGCTCGTGGCTCATC+TGG - chr3.4:69095431-69095450 MS.gene008161:intron 60.0%
! TAGCGAGGGCCTTGTGCACT+GGG - chr3.4:69094611-69094630 MS.gene008161:CDS 60.0%
CAGTGCACAAGGCCCTCGCT+AGG + chr3.4:69094612-69094631 None:intergenic 65.0%
TGCACAAGGCCCTCGCTAGG+TGG + chr3.4:69094609-69094628 None:intergenic 65.0%
! CTAGCGAGGGCCTTGTGCAC+TGG - chr3.4:69094610-69094629 MS.gene008161:CDS 65.0%
TGGCGACGGCCCAGTGCACA+AGG + chr3.4:69094623-69094642 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 69093756 69095876 69093756 ID=MS.gene008161
chr3.4 mRNA 69093756 69095876 69093756 ID=MS.gene008161.t1;Parent=MS.gene008161
chr3.4 exon 69095580 69095876 69095580 ID=MS.gene008161.t1.exon1;Parent=MS.gene008161.t1
chr3.4 CDS 69095580 69095876 69095580 ID=cds.MS.gene008161.t1;Parent=MS.gene008161.t1
chr3.4 exon 69094566 69094782 69094566 ID=MS.gene008161.t1.exon2;Parent=MS.gene008161.t1
chr3.4 CDS 69094566 69094782 69094566 ID=cds.MS.gene008161.t1;Parent=MS.gene008161.t1
chr3.4 exon 69094361 69094467 69094361 ID=MS.gene008161.t1.exon3;Parent=MS.gene008161.t1
chr3.4 CDS 69094361 69094467 69094361 ID=cds.MS.gene008161.t1;Parent=MS.gene008161.t1
chr3.4 exon 69093756 69093944 69093756 ID=MS.gene008161.t1.exon4;Parent=MS.gene008161.t1
chr3.4 CDS 69093756 69093944 69093756 ID=cds.MS.gene008161.t1;Parent=MS.gene008161.t1
Gene Sequence

>MS.gene008161

ATGGAGAACCAAGAGAGCAGCATGAGAGGCACAAGATGGTCTCTCAAGGGAAAGTCTGCTCTAGTTACTGGTGGAACTCGTGGAATCGGTCATGCTGTGGTGGAGGAACTAGCTGAGTTTGGTGCCACAGTGTACACTTGCTCTAGGAATGAAGAAGAGCTGAGCAAATGCTTAAATGAGTGGAAAGAGAAGGGTTTTTTTGTTTATGGATCGGTTTGTGATGCATCTTCTCCTTCTCAAAGAGAGGAGCTTATTCGACAAGTTGCTTCTGCTTTCAACGGCAAGCTCAACATACTTGTGAGTTTTTCCTTTTCTATATATTTCGTTTTCCGTTTCTATATTATGTTGATGTTGATGTTGAATTTTGCATAGCTGGTAGTCTTTTAATTCATGAAAATTACTCGTACAATACAAATATTCAGTTTTTAACTTCTTTTAATCAATTTGTAGATGCTCGTGGAAAACTTAGTTGGAAAAGTTTTTGAAAAATTGAAATGCCAAATTATTTTCAACTAGCACAACAGAATATATTATTTACAATTTGATTTGTATGTTTGTCTTAAGGTTATATTAATGTTTACTTTCTATAAGAATTTGTATTGTATTTATCAAACTTACTCTTATAGTCTCGTTCATCAGTTCACTTTTTGAGTGTGTTGGAGATTGATCTAATGCATTATAACTCTAACGGTGTTTCATCGTTCTGTGTATTGCTGCAACATGTTTTAAGATTTTCTTCCTGGTGAAAAAATAAAATAGTAGAAGTTATAGAAGAAGGTTGAAATGCCTCACACACACACACACAGTGAGAGCTTGTCCCTATGCTAAGGTTGTTATAAGGCTGCTTACTCCACCTAGCGAGGGCCTTGTGCACTGGGCCGTCGCCAATCTTACACGCACTTGATTTTCAAGTGGTTACATTACATACTTAAAAAAATTGCATTCTTTTGATGTACTTTGGCTTGTTATAAGACTTTCTTATGGATGCTTCAAATACACTCAGAAATGTTCACCTTTTTCGTCTTGTTTCTGGTATGCATGACTTTAACTTATAATAAAAGTTATGTTCATATGATAATCTTGTGAGCTATTAGGTAAACAATGCTGGTACAAATGTGAGGAAGCCAACAATTGAGTATACAGCCGAAGATTATTCAAAAGTGATGACTACTAACTTGGATTCTGCATTCCATCTATGTCAACTGGCACATCCTCTTCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCCTCTGTTGCATCTCTGATAAGCGTAGGTACCGGAAGCATCTATGCAGTGAGTAAAGGTAACTTGGTGATCATCATGTCTACTTAATTTGCATAATGAGTACAAACTATTTTGATAGACATTTACTGAAGCGATTCACTGTGTTGTTTTCTTCAGCTGCAATCAATCAGCTGACAAAAAGTCTTGCTTGTGAATGGGCAAAAGACAATATAAGGAGCAACTGTGTTGCACCCTGGTATACAAAAACGTCGCTTGTGGAACAGGTAATGCTCTTTTCACACCTTTAATTATCCATTCTCTGGCCTTGTCATTTTTTCTTTATGAAGATTGCTTAAGTTTGTAAATATATATTTTCTCCTACGTTGCGATTCAATAATACTCTTATGATGTTACTCTGATTCACGTATGCATCCGAAACACGATCATGGGCTCGTGGCTCATCTGGATGTTAGCCTGATTCATGCAACCGAAATCATGTATTAGTAGGCTAACTCTTTTAAGTGTTGATCAATGAAAAACATATCTGTAACTATCCACCATATGATGCCTCTGCATTTTAATTTTTGCTGAAAATAAACATATGTGTAACTGTAGTGTCAGTGTGAGCATCTGTAGTATTAATCCAAATGGCAATGTTATGTTCAGAACTTATGTGGCTAATAATTTACCTTTCTTGCAGTTTATTGCTAACAAAGAGTTTGTGAATGAAGTATTATCTCGAACACCGATAAAGCGTATAGCAGAAACACATGAAGTGTCTGCCTTGGTGACTTTCCTTTGTCTGCCAGCTGCTTCCTACATCACTGGACAAACTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTTCTGGGTTGTTTAAATAA
Protein sequence

>MS.gene008161.t1

MENQESSMRGTRWSLKGKSALVTGGTRGIGHAVVEELAEFGATVYTCSRNEEELSKCLNEWKEKGFFVYGSVCDASSPSQREELIRQVASAFNGKLNILVNNAGTNVRKPTIEYTAEDYSKVMTTNLDSAFHLCQLAHPLLKESGNGSIVFISSVASLISVGTGSIYAVSKAAINQLTKSLACEWAKDNIRSNCVAPWYTKTSLVEQFIANKEFVNEVLSRTPIKRIAETHEVSALVTFLCLPAASYITGQTVSVDGGFTVNGFSGLFK