AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62195

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62195.t1 MTR_3g068065 96.000 275 9 1 1 273 1 275 0.0 538
MS.gene62195.t1 MTR_3g068085 87.037 270 35 0 1 270 1 270 6.22e-172 476
MS.gene62195.t1 MTR_3g068070 83.712 264 43 0 1 264 1 264 4.74e-166 461
MS.gene62195.t1 MTR_3g068155 72.222 270 74 1 2 270 5 274 1.68e-145 409
MS.gene62195.t1 MTR_3g068175 70.588 272 78 1 1 270 1 272 4.51e-140 395
MS.gene62195.t1 MTR_3g068175 69.565 276 78 2 1 270 1 276 8.36e-138 389
MS.gene62195.t1 MTR_4g064883 59.091 264 108 0 4 267 3 266 2.61e-119 342
MS.gene62195.t1 MTR_4g064887 61.069 262 102 0 1 262 1 262 4.11e-118 339
MS.gene62195.t1 MTR_7g063270 59.073 259 103 1 6 261 7 265 7.54e-105 305
MS.gene62195.t1 MTR_7g063320 58.431 255 102 1 9 259 9 263 1.29e-104 305
MS.gene62195.t1 MTR_7g063260 57.308 260 107 1 6 261 7 266 8.55e-103 300
MS.gene62195.t1 MTR_7g063330 57.812 256 105 2 9 261 9 264 1.24e-100 295
MS.gene62195.t1 MTR_7g063360 56.981 265 109 3 1 260 1 265 5.55e-100 293
MS.gene62195.t1 MTR_7g063390 55.094 265 114 2 1 260 1 265 4.05e-99 291
MS.gene62195.t1 MTR_4g064887 63.235 204 75 0 1 204 1 204 2.21e-93 275
MS.gene62195.t1 MTR_4g064883 59.204 201 82 0 4 204 3 203 4.29e-88 261
MS.gene62195.t1 MTR_7g063270 49.807 259 78 3 6 261 7 216 4.03e-77 233
MS.gene62195.t1 MTR_4g132850 33.333 249 155 6 15 259 7 248 3.60e-35 127
MS.gene62195.t1 MTR_7g094510 32.937 252 159 8 15 259 6 254 4.58e-29 111
MS.gene62195.t1 MTR_7g094520 33.463 257 151 10 15 259 11 259 1.09e-28 110
MS.gene62195.t1 MTR_3g085740 30.705 241 162 4 21 259 81 318 2.09e-27 108
MS.gene62195.t1 MTR_7g071680 30.742 283 158 8 8 261 22 295 1.52e-25 102
MS.gene62195.t1 MTR_7g083870 30.996 271 165 8 9 261 22 288 2.92e-25 102
MS.gene62195.t1 MTR_4g058810 29.615 260 170 9 15 264 11 267 1.92e-23 96.7
MS.gene62195.t1 MTR_1196s0010 30.864 243 157 6 20 259 279 513 4.49e-23 98.6
MS.gene62195.t1 MTR_4g058840 29.231 260 171 9 15 264 11 267 7.39e-23 95.1
MS.gene62195.t1 MTR_4g058820 29.231 260 171 9 15 264 11 267 7.39e-23 95.1
MS.gene62195.t1 MTR_3g068075 88.000 50 5 1 123 171 1 50 1.76e-22 89.0
MS.gene62195.t1 MTR_7g107670 28.302 265 175 7 7 261 26 285 3.16e-22 94.0
MS.gene62195.t1 MTR_8g442750 27.863 262 162 7 15 259 14 265 1.19e-19 86.7
MS.gene62195.t1 MTR_4g078630 30.385 260 162 10 15 261 19 272 1.44e-19 86.3
MS.gene62195.t1 MTR_4g052350 28.958 259 167 10 15 264 14 264 2.06e-19 85.5
MS.gene62195.t1 MTR_4g131740 28.195 266 179 6 6 262 31 293 3.58e-19 85.5
MS.gene62195.t1 MTR_1g068955 29.615 260 166 9 15 263 14 267 5.09e-19 84.7
MS.gene62195.t1 MTR_6g023590 28.788 264 174 9 5 259 3 261 8.68e-18 81.3
MS.gene62195.t1 MTR_3g020670 28.731 268 172 8 7 260 8 270 1.07e-17 81.3
MS.gene62195.t1 MTR_4g052320 27.843 255 176 7 15 264 8 259 1.16e-17 80.9
MS.gene62195.t1 MTR_6g023910 29.259 270 171 10 1 259 1 261 3.07e-17 79.7
MS.gene62195.t1 MTR_6g023990 28.897 263 171 9 7 259 6 262 5.51e-17 79.0
MS.gene62195.t1 MTR_8g089575 31.683 202 111 5 17 202 47 237 2.35e-16 77.8
MS.gene62195.t1 MTR_2g090165 26.848 257 176 7 11 260 2 253 2.79e-16 77.0
MS.gene62195.t1 MTR_4g052300 27.027 259 172 10 15 264 8 258 3.44e-16 76.6
MS.gene62195.t1 MTR_7g113650 28.125 256 173 7 15 262 40 292 3.59e-16 77.0
MS.gene62195.t1 MTR_7g105590 29.189 185 126 3 15 197 8 189 3.87e-16 75.1
MS.gene62195.t1 MTR_4g052340 26.792 265 165 8 15 264 14 264 6.94e-16 75.9
MS.gene62195.t1 MTR_4g058830 30.814 172 112 6 98 264 44 213 1.48e-15 73.9
MS.gene62195.t1 MTR_7g105460 28.185 259 162 10 15 260 13 260 3.86e-15 73.9
MS.gene62195.t1 MTR_7g105580 26.217 267 163 9 15 272 8 249 4.39e-15 73.6
MS.gene62195.t1 MTR_1g051165 25.681 257 175 10 21 263 20 274 6.13e-15 73.6
MS.gene62195.t1 MTR_6g023610 28.195 266 173 9 5 259 3 261 1.35e-14 72.4
MS.gene62195.t1 MTR_6g023600 28.030 264 176 7 5 259 3 261 1.47e-14 72.0
MS.gene62195.t1 MTR_6g023950 27.481 262 180 7 5 259 3 261 1.66e-14 72.0
MS.gene62195.t1 MTR_7g110130 28.244 262 167 9 11 260 2 254 1.80e-14 72.0
MS.gene62195.t1 MTR_5g098650 66.000 50 17 0 221 270 124 173 3.38e-14 69.3
MS.gene62195.t1 MTR_1g082760 26.459 257 178 6 15 263 40 293 5.52e-14 70.9
MS.gene62195.t1 MTR_7g110140 27.099 262 183 7 11 267 2 260 6.18e-14 70.5
MS.gene62195.t1 MTR_7g110160 28.125 256 156 7 11 260 2 235 4.02e-13 67.8
MS.gene62195.t1 MTR_8g044240 27.273 187 129 4 15 195 69 254 4.80e-13 68.6
MS.gene62195.t1 MTR_6g023600 27.273 264 172 7 5 259 3 255 1.32e-12 66.6
MS.gene62195.t1 MTR_3g086210 27.723 202 123 4 17 204 53 245 1.64e-12 67.0
MS.gene62195.t1 MTR_3g098470 31.973 147 98 2 8 154 25 169 2.08e-12 66.6
MS.gene62195.t1 MTR_7g076660 31.148 244 105 9 20 205 10 248 5.20e-12 65.1
MS.gene62195.t1 MTR_7g076660 31.148 244 105 9 20 205 9 247 6.01e-12 65.1
MS.gene62195.t1 MTR_3g113870 26.816 179 125 3 28 204 34 208 7.70e-12 63.9
MS.gene62195.t1 MTR_1579s0020 34.091 88 57 1 181 268 1 87 1.29e-11 60.1
MS.gene62195.t1 MTR_7g080410 26.702 191 130 4 22 205 45 232 2.75e-11 63.2
MS.gene62195.t1 MTR_7g080410 26.776 183 124 4 22 197 45 224 3.25e-11 63.2
MS.gene62195.t1 MTR_4g134660 27.219 169 120 2 19 184 10 178 3.35e-11 62.0
MS.gene62195.t1 MTR_1275s0010 28.455 123 88 0 139 261 259 381 5.14e-11 63.2
MS.gene62195.t1 MTR_1g031180 31.293 147 99 2 8 154 30 174 6.11e-11 62.4
MS.gene62195.t1 MTR_1563s0010 27.815 151 103 2 6 151 100 249 6.53e-11 62.4
MS.gene62195.t1 MTR_6g035395 25.591 254 168 8 12 260 2 239 7.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62195.t1 AT5G06060 68.093 257 82 0 12 268 6 262 9.04e-131 371
MS.gene62195.t1 AT2G29150 60.755 265 102 2 1 264 1 264 6.11e-116 334
MS.gene62195.t1 AT2G29290 61.479 257 97 1 12 266 4 260 3.19e-115 332
MS.gene62195.t1 AT2G29350 60.377 265 102 2 1 264 1 263 2.44e-114 330
MS.gene62195.t1 AT2G29260 61.176 255 99 0 12 266 65 319 6.36e-114 331
MS.gene62195.t1 AT2G29360 59.245 265 107 1 1 264 1 265 2.61e-112 325
MS.gene62195.t1 AT1G07440 58.555 263 106 2 6 266 3 264 1.25e-110 320
MS.gene62195.t1 AT2G29370 56.981 265 113 1 1 264 1 265 1.95e-107 312
MS.gene62195.t1 AT2G29340 58.301 259 106 1 12 268 4 262 1.28e-106 310
MS.gene62195.t1 AT2G29340 57.795 263 109 1 12 272 4 266 4.53e-106 310
MS.gene62195.t1 AT2G30670 58.498 253 105 0 12 264 4 256 3.25e-105 306
MS.gene62195.t1 AT1G07450 58.893 253 103 1 12 264 5 256 6.81e-105 305
MS.gene62195.t1 AT2G29330 59.690 258 100 3 12 266 4 260 1.07e-104 305
MS.gene62195.t1 AT2G29290 60.338 237 92 1 32 266 7 243 1.60e-102 299
MS.gene62195.t1 AT2G29310 57.708 253 107 0 12 264 4 256 2.18e-102 299
MS.gene62195.t1 AT2G29320 57.977 257 105 2 13 266 11 267 5.16e-101 296
MS.gene62195.t1 AT2G29300 56.202 258 110 2 12 266 4 261 1.73e-99 292
MS.gene62195.t1 AT2G29300 56.400 250 108 1 12 260 4 253 1.70e-96 285
MS.gene62195.t1 AT2G29350 59.735 226 88 2 40 264 2 225 2.50e-95 280
MS.gene62195.t1 AT2G29320 56.904 239 100 2 31 266 11 249 3.04e-90 268
MS.gene62195.t1 AT2G29310 56.410 234 102 0 31 264 21 254 4.82e-90 268
MS.gene62195.t1 AT2G29350 60.194 206 82 0 1 206 1 206 2.38e-88 262
MS.gene62195.t1 AT2G29340 58.247 194 81 0 12 205 4 197 6.12e-79 237
MS.gene62195.t1 AT2G29340 58.247 194 81 0 12 205 4 197 6.12e-79 237
MS.gene62195.t1 AT2G29310 57.949 195 82 0 12 206 4 198 1.68e-77 234
MS.gene62195.t1 AT2G29320 58.639 191 78 1 13 202 11 201 1.97e-75 229
MS.gene62195.t1 AT1G07440 56.886 167 72 0 6 172 3 169 9.94e-66 203
MS.gene62195.t1 AT2G29310 56.250 176 77 0 31 206 21 196 1.01e-64 201
MS.gene62195.t1 AT2G29170 60.784 102 39 1 1 101 1 102 1.31e-35 124
MS.gene62195.t1 AT4G05530 34.146 246 157 5 15 259 9 250 3.97e-35 127
MS.gene62195.t1 AT5G18210 34.221 263 154 9 10 259 3 259 1.54e-31 117
MS.gene62195.t1 AT3G03980 32.046 259 159 7 15 259 14 269 8.09e-30 113
MS.gene62195.t1 AT4G13180 33.459 266 162 10 4 259 1 261 2.95e-29 112
MS.gene62195.t1 AT1G24360 30.204 245 158 7 21 259 80 317 2.76e-27 107
MS.gene62195.t1 AT5G18210 33.080 263 144 10 10 259 3 246 9.05e-27 105
MS.gene62195.t1 AT3G04000 33.086 269 160 9 6 258 5 269 5.35e-24 98.2
MS.gene62195.t1 AT3G55310 28.295 258 174 7 15 263 17 272 9.71e-23 95.1
MS.gene62195.t1 AT3G55290 28.295 258 174 7 15 263 18 273 1.33e-22 94.7
MS.gene62195.t1 AT3G55290 28.295 258 174 7 15 263 17 272 1.52e-22 94.4
MS.gene62195.t1 AT1G63380 27.473 273 186 6 1 263 1 271 8.53e-22 92.4
MS.gene62195.t1 AT1G63380 27.799 259 175 6 15 263 17 273 1.02e-21 92.0
MS.gene62195.t1 AT1G63380 27.799 259 175 6 15 263 19 275 1.22e-21 92.0
MS.gene62195.t1 AT1G63380 27.799 259 175 6 15 263 22 278 1.48e-21 92.0
MS.gene62195.t1 AT3G46170 28.682 258 173 7 15 263 26 281 1.71e-21 91.7
MS.gene62195.t1 AT1G54870 31.128 257 166 6 15 263 84 337 1.89e-21 92.4
MS.gene62195.t1 AT1G54870 31.128 257 166 6 15 263 82 335 2.12e-21 92.4
MS.gene62195.t1 AT1G62610 27.106 273 187 6 1 263 1 271 2.22e-21 91.3
MS.gene62195.t1 AT1G62610 27.413 259 176 6 15 263 19 275 2.65e-21 91.3
MS.gene62195.t1 AT1G62610 27.413 259 176 6 15 263 14 270 2.65e-21 90.9
MS.gene62195.t1 AT1G62610 27.413 259 176 6 15 263 13 269 2.83e-21 90.9
MS.gene62195.t1 AT3G26760 28.464 267 171 7 8 260 30 290 8.46e-21 90.1
MS.gene62195.t1 AT2G17845 27.481 262 176 7 15 264 47 306 1.28e-20 89.7
MS.gene62195.t1 AT2G47130 30.469 256 167 8 11 260 2 252 2.61e-20 87.8
MS.gene62195.t1 AT2G47120 28.947 266 169 12 11 267 2 256 7.41e-20 86.7
MS.gene62195.t1 AT2G47120 29.008 262 166 12 15 267 7 257 1.11e-19 86.3
MS.gene62195.t1 AT3G05260 30.469 256 166 6 15 262 37 288 7.37e-19 84.3
MS.gene62195.t1 AT3G12800 25.490 255 178 6 15 259 10 262 2.70e-18 83.2
MS.gene62195.t1 AT3G51680 26.692 266 173 7 15 260 32 295 8.81e-18 81.6
MS.gene62195.t1 AT1G52340 30.075 266 158 10 15 260 18 275 2.18e-17 80.5
MS.gene62195.t1 AT3G29260 29.183 257 169 8 11 260 2 252 4.34e-16 76.3
MS.gene62195.t1 AT3G42960 29.457 258 158 9 20 261 13 262 5.80e-16 76.3
MS.gene62195.t1 AT3G26770 27.132 258 173 5 15 261 41 294 8.73e-16 76.3
MS.gene62195.t1 AT4G03140 25.391 256 177 5 15 260 78 329 5.19e-15 74.3
MS.gene62195.t1 AT5G04900 30.435 184 120 5 18 195 80 261 2.70e-14 72.4
MS.gene62195.t1 AT4G13250 26.172 256 150 8 21 243 165 414 5.93e-13 68.9
MS.gene62195.t1 AT1G49670 28.910 211 129 7 17 211 6 211 6.83e-13 68.9
MS.gene62195.t1 AT1G49670 28.910 211 129 7 17 211 6 211 7.53e-13 68.6
MS.gene62195.t1 AT3G06060 26.768 198 138 2 9 203 31 224 2.26e-12 66.6
MS.gene62195.t1 AT3G06060 26.768 198 138 2 9 203 48 241 2.56e-12 66.6
MS.gene62195.t1 AT1G10310 30.539 167 113 3 19 184 19 183 3.48e-12 65.1
MS.gene62195.t1 AT5G65205 27.528 178 122 3 21 197 12 183 2.14e-11 63.2
MS.gene62195.t1 AT5G10050 28.495 186 120 5 21 202 11 187 2.14e-11 63.2

Find 54 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTACACGCTGCGTATA+TGG 0.258151 3.2:+62754466 None:intergenic
ACTTAATTAATCACTTCTTA+TGG 0.284170 3.2:+62753871 None:intergenic
AATGGGCAAAAGACAATATA+AGG 0.317797 3.2:-62754302 MS.gene62195:CDS
GGACAAGTTATTTCTGTTGA+TGG 0.321935 3.2:-62753929 MS.gene62195:CDS
TATCCTCTTCTTAAAGAATC+TGG 0.324082 3.2:-62754548 MS.gene62195:CDS
GTAGAGGAACTTGCTGAGTT+TGG 0.369806 3.2:-62755431 MS.gene62195:CDS
ATCACTTCTTATGGTCATGC+TGG 0.390380 3.2:+62753880 None:intergenic
TCCGTTGTATACTCAATTGT+TGG 0.395157 3.2:+62754632 None:intergenic
CTATAGTGTACACTTGTTCT+AGG 0.398286 3.2:-62755406 MS.gene62195:CDS
CTTCTTAAAGAATCTGGAAA+TGG 0.409640 3.2:-62754542 MS.gene62195:CDS
GATATGTCAGTTGGCATAGA+TGG 0.418094 3.2:+62754567 None:intergenic
AAAATTGATGAGTATTAACT+TGG 0.439582 3.2:-62754600 MS.gene62195:CDS
CTCGTCACCGGTGGAACTCG+TGG 0.467504 3.2:-62755470 MS.gene62195:CDS
TTGAATGAGTGGAAGGAGAA+AGG 0.480371 3.2:-62755359 MS.gene62195:CDS
TCACTTCTTATGGTCATGCT+GGG 0.488997 3.2:+62753881 None:intergenic
TCTCTGACAAACGTAGGTTC+TGG 0.495804 3.2:-62754491 MS.gene62195:CDS
AACATTACATAATCGTTAAG+TGG 0.496146 3.2:+62754246 None:intergenic
TATCTCGAACTCCGATAAAA+CGG 0.501717 3.2:-62754021 MS.gene62195:CDS
ACCGGTGGAACTCGTGGGAT+CGG 0.503309 3.2:-62755464 MS.gene62195:CDS
TTTCCAGATTCTTTAAGAAG+AGG 0.503369 3.2:+62754545 None:intergenic
ACATGAAGTGTCTTCCTTGG+TGG 0.509451 3.2:-62753987 MS.gene62195:CDS
TGAACTTAGGTAAACAATGT+TGG 0.512364 3.2:-62754671 MS.gene62195:intron
AATAACTTGTCCAGTGATGT+AGG 0.517499 3.2:+62753940 None:intergenic
ACCATATACGCAGCGTGTAA+AGG 0.519622 3.2:-62754467 MS.gene62195:intron
CCAGCTGCTTCCTACATCAC+TGG 0.520639 3.2:-62753950 MS.gene62195:CDS
AACACATGAAGTGTCTTCCT+TGG 0.529357 3.2:-62753990 MS.gene62195:CDS
TAAGAAGAGGATATGTCAGT+TGG 0.546406 3.2:+62754558 None:intergenic
CAAGTTATTTCTGTTGATGG+AGG 0.549415 3.2:-62753926 MS.gene62195:CDS
ACCGATCCCACGAGTTCCAC+CGG 0.553414 3.2:+62755463 None:intergenic
GATGGAGGATTTACTGCGAA+TGG 0.556013 3.2:-62753911 MS.gene62195:CDS
GACTTCTTCTTCTCAAAGAG+AGG 0.564516 3.2:-62755306 MS.gene62195:CDS
AAGGTGGCTTCTGATTTCAA+TGG 0.567581 3.2:-62755272 MS.gene62195:CDS
AAGAGAGGAGCTTGTTCGAA+AGG 0.571197 3.2:-62755291 MS.gene62195:CDS
GGATTCACAGCTCTCGTCAC+CGG 0.571734 3.2:-62755482 MS.gene62195:CDS
AAGCTCAAGATGGTCCCTCA+AGG 0.573784 3.2:-62755504 MS.gene62195:CDS
GAGAGCTGTGAATCCCTTGA+GGG 0.579284 3.2:+62755490 None:intergenic
AGAGGAGCTTGTTCGAAAGG+TGG 0.587374 3.2:-62755288 MS.gene62195:CDS
CCAGTGATGTAGGAAGCAGC+TGG 0.588298 3.2:+62753950 None:intergenic
AGCTCAAGATGGTCCCTCAA+GGG 0.601552 3.2:-62755503 MS.gene62195:CDS
AGGAAGCAGCTGGCAGACAA+AGG 0.611292 3.2:+62753960 None:intergenic
TCGTCACCGGTGGAACTCGT+GGG 0.613856 3.2:-62755469 MS.gene62195:CDS
TTCACAGCTCTCGTCACCGG+TGG 0.616296 3.2:-62755479 MS.gene62195:CDS
CGAGAGCTGTGAATCCCTTG+AGG 0.617629 3.2:+62755489 None:intergenic
ACAGTAGCAGAAGCTCAAGA+TGG 0.618803 3.2:-62755514 MS.gene62195:CDS
CAGACAAAGGAAAGCCACCA+AGG 0.631375 3.2:+62753973 None:intergenic
TGAATGAACGCTTGAATGAG+TGG 0.642583 3.2:-62755370 MS.gene62195:CDS
TGAACGCTTGAATGAGTGGA+AGG 0.643639 3.2:-62755366 MS.gene62195:CDS
CACTTGTTCTAGGAATGAAG+AGG 0.665255 3.2:-62755396 MS.gene62195:CDS
GCCAACAATTGAGTATACAA+CGG 0.674590 3.2:-62754633 MS.gene62195:CDS
GTTGCATCTCTGACAAACGT+AGG 0.677603 3.2:-62754497 MS.gene62195:CDS
GTTTGTCAGAGATGCAACAG+AGG 0.693930 3.2:+62754502 None:intergenic
ACAATGTTGGAACAAATGTG+AGG 0.694611 3.2:-62754658 MS.gene62195:CDS
GATCGGTCATGCTATCGTAG+AGG 0.705413 3.2:-62755447 MS.gene62195:CDS
GGAGCAACTGTGTTGCACCG+TGG 0.740002 3.2:-62754281 MS.gene62195:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATGTTGATTTTAAAT+AGG - chr3.2:62754214-62754233 MS.gene62195:intron 10.0%
!! AAGCATAAGAAAATATTAAA+TGG + chr3.2:62754539-62754558 None:intergenic 15.0%
!! ACTTATTGTAAAAAATTTAG+TGG - chr3.2:62754295-62754314 MS.gene62195:CDS 15.0%
!! AAAATTGATGAGTATTAACT+TGG - chr3.2:62754807-62754826 MS.gene62195:intron 20.0%
!! CAGAAAGAAAAAAATGATAA+GGG + chr3.2:62755217-62755236 None:intergenic 20.0%
!! TCAGAAAGAAAAAAATGATA+AGG + chr3.2:62755218-62755237 None:intergenic 20.0%
!! TCTTAAATTCTAATGAACTT+AGG - chr3.2:62754723-62754742 MS.gene62195:intron 20.0%
!!! TTAAGCATACTTACATTTTA+AGG + chr3.2:62754481-62754500 None:intergenic 20.0%
! AAAAGTGAGTAATCTTCAAA+TGG - chr3.2:62755280-62755299 MS.gene62195:CDS 25.0%
! AACATTACATAATCGTTAAG+TGG + chr3.2:62755164-62755183 None:intergenic 25.0%
! AACATTGCATTACATATGAA+GGG - chr3.2:62754421-62754440 MS.gene62195:intron 25.0%
!! GTGCTGATAATAATTTGATT+TGG - chr3.2:62755252-62755271 MS.gene62195:intron 25.0%
!!! TACATTTTAAGGTGAATAAG+TGG + chr3.2:62754470-62754489 None:intergenic 25.0%
AAAAAGTCTTGCTTGTGAAT+GGG - chr3.2:62755088-62755107 MS.gene62195:intron 30.0%
AAAATGATAAGGGATCTGAA+TGG + chr3.2:62755207-62755226 None:intergenic 30.0%
AATGGGCAAAAGACAATATA+AGG - chr3.2:62755105-62755124 MS.gene62195:intron 30.0%
CTTCTTAAAGAATCTGGAAA+TGG - chr3.2:62754865-62754884 MS.gene62195:intron 30.0%
GAACATTGCATTACATATGA+AGG - chr3.2:62754420-62754439 MS.gene62195:intron 30.0%
GGATCTGAATGGATAATTAA+AGG + chr3.2:62755196-62755215 None:intergenic 30.0%
GTTTACACATGATTGGAATT+TGG + chr3.2:62754354-62754373 None:intergenic 30.0%
GTTTGCTTAAACATGATTGA+TGG - chr3.2:62754988-62755007 MS.gene62195:intron 30.0%
TATCCTCTTCTTAAAGAATC+TGG - chr3.2:62754859-62754878 MS.gene62195:intron 30.0%
TGAACTTAGGTAAACAATGT+TGG - chr3.2:62754736-62754755 MS.gene62195:intron 30.0%
! AGGTTTTTCTGTTTATGGAT+CGG - chr3.2:62754068-62754087 MS.gene62195:intron 30.0%
! GAGAAAGGTTTTTCTGTTTA+TGG - chr3.2:62754063-62754082 MS.gene62195:intron 30.0%
! TTTCCAGATTCTTTAAGAAG+AGG + chr3.2:62754865-62754884 None:intergenic 30.0%
AAGGTGAATAAGTGGAAATC+CGG + chr3.2:62754462-62754481 None:intergenic 35.0%
ACAATGTTGGAACAAATGTG+AGG - chr3.2:62754749-62754768 MS.gene62195:intron 35.0%
ATGACTCGTTTACACATGAT+TGG + chr3.2:62754361-62754380 None:intergenic 35.0%
CAAAAAGTCTTGCTTGTGAA+TGG - chr3.2:62755087-62755106 MS.gene62195:intron 35.0%
CTATAGTGTACACTTGTTCT+AGG - chr3.2:62754001-62754020 MS.gene62195:CDS 35.0%
GCCAACAATTGAGTATACAA+CGG - chr3.2:62754774-62754793 MS.gene62195:intron 35.0%
TAAGAAGAGGATATGTCAGT+TGG + chr3.2:62754852-62754871 None:intergenic 35.0%
TATCTCGAACTCCGATAAAA+CGG - chr3.2:62755386-62755405 MS.gene62195:CDS 35.0%
TCCGTTGTATACTCAATTGT+TGG + chr3.2:62754778-62754797 None:intergenic 35.0%
TGCATTACATATGAAGGGAT+TGG - chr3.2:62754426-62754445 MS.gene62195:intron 35.0%
TTAGCATACAGCTGTAAGAA+AGG + chr3.2:62755343-62755362 None:intergenic 35.0%
! AATAACTTGTCCAGTGATGT+AGG + chr3.2:62755470-62755489 None:intergenic 35.0%
! CTTTTGATGCACTTTGTCTT+TGG - chr3.2:62754513-62754532 MS.gene62195:CDS 35.0%
! GTTTCTGCTATCCGTTTTAT+CGG + chr3.2:62755400-62755419 None:intergenic 35.0%
! TGTATAGACATCCCATTTTC+AGG + chr3.2:62754582-62754601 None:intergenic 35.0%
!! CAAGTTATTTCTGTTGATGG+AGG - chr3.2:62755481-62755500 MS.gene62195:CDS 35.0%
!! GGACAAGTTATTTCTGTTGA+TGG - chr3.2:62755478-62755497 MS.gene62195:CDS 35.0%
AAGGTGGCTTCTGATTTCAA+TGG - chr3.2:62754135-62754154 MS.gene62195:intron 40.0%
ATCACTTCTTATGGTCATGC+TGG + chr3.2:62755530-62755549 None:intergenic 40.0%
GACTTCTTCTTCTCAAAGAG+AGG - chr3.2:62754101-62754120 MS.gene62195:intron 40.0%
GATATGTCAGTTGGCATAGA+TGG + chr3.2:62754843-62754862 None:intergenic 40.0%
TCACTTCTTATGGTCATGCT+GGG + chr3.2:62755529-62755548 None:intergenic 40.0%
TGAATGAACGCTTGAATGAG+TGG - chr3.2:62754037-62754056 MS.gene62195:CDS 40.0%
TTGAATGAGTGGAAGGAGAA+AGG - chr3.2:62754048-62754067 MS.gene62195:CDS 40.0%
! AACACATGAAGTGTCTTCCT+TGG - chr3.2:62755417-62755436 MS.gene62195:CDS 40.0%
! AGTGGCGTTTTTGTATACCA+CGG + chr3.2:62755146-62755165 None:intergenic 40.0%
!! CACTTGTTCTAGGAATGAAG+AGG - chr3.2:62754011-62754030 MS.gene62195:CDS 40.0%
ACAGTAGCAGAAGCTCAAGA+TGG - chr3.2:62753893-62753912 MS.gene62195:CDS 45.0%
ACCATATACGCAGCGTGTAA+AGG - chr3.2:62754940-62754959 MS.gene62195:intron 45.0%
ACCTTTACACGCTGCGTATA+TGG + chr3.2:62754944-62754963 None:intergenic 45.0%
GATGGAGGATTTACTGCGAA+TGG - chr3.2:62755496-62755515 MS.gene62195:CDS 45.0%
GTTGCATCTCTGACAAACGT+AGG - chr3.2:62754910-62754929 MS.gene62195:intron 45.0%
GTTTGTCAGAGATGCAACAG+AGG + chr3.2:62754908-62754927 None:intergenic 45.0%
TCTCTGACAAACGTAGGTTC+TGG - chr3.2:62754916-62754935 MS.gene62195:intron 45.0%
TGAACGCTTGAATGAGTGGA+AGG - chr3.2:62754041-62754060 MS.gene62195:CDS 45.0%
TGCAGCTGAAGAAAACAGCA+CGG + chr3.2:62755054-62755073 None:intergenic 45.0%
! AAGAGAGGAGCTTGTTCGAA+AGG - chr3.2:62754116-62754135 MS.gene62195:intron 45.0%
! ACATGAAGTGTCTTCCTTGG+TGG - chr3.2:62755420-62755439 MS.gene62195:CDS 45.0%
!! ATCCCATTTTCAGGCTTCTG+AGG + chr3.2:62754573-62754592 None:intergenic 45.0%
!! GTAGAGGAACTTGCTGAGTT+TGG - chr3.2:62753976-62753995 MS.gene62195:CDS 45.0%
!! TCCCATTTTCAGGCTTCTGA+GGG + chr3.2:62754572-62754591 None:intergenic 45.0%
AAGCTCAAGATGGTCCCTCA+AGG - chr3.2:62753903-62753922 MS.gene62195:CDS 50.0%
AGCTCAAGATGGTCCCTCAA+GGG - chr3.2:62753904-62753923 MS.gene62195:CDS 50.0%
CAGACAAAGGAAAGCCACCA+AGG + chr3.2:62755437-62755456 None:intergenic 50.0%
GAGAGCTGTGAATCCCTTGA+GGG + chr3.2:62753920-62753939 None:intergenic 50.0%
GATCGGTCATGCTATCGTAG+AGG - chr3.2:62753960-62753979 MS.gene62195:CDS 50.0%
GCCCTCAGAAGCCTGAAAAT+GGG - chr3.2:62754568-62754587 MS.gene62195:CDS 50.0%
TGCCCTCAGAAGCCTGAAAA+TGG - chr3.2:62754567-62754586 MS.gene62195:CDS 50.0%
! AGAGGAGCTTGTTCGAAAGG+TGG - chr3.2:62754119-62754138 MS.gene62195:intron 50.0%
! AGGGATTGGTGTTCTAACGC+CGG - chr3.2:62754440-62754459 MS.gene62195:intron 50.0%
AGGAAGCAGCTGGCAGACAA+AGG + chr3.2:62755450-62755469 None:intergenic 55.0%
CCAGCTGCTTCCTACATCAC+TGG - chr3.2:62755457-62755476 MS.gene62195:CDS 55.0%
CCAGTGATGTAGGAAGCAGC+TGG + chr3.2:62755460-62755479 None:intergenic 55.0%
CGAGAGCTGTGAATCCCTTG+AGG + chr3.2:62753921-62753940 None:intergenic 55.0%
GGATTCACAGCTCTCGTCAC+CGG - chr3.2:62753925-62753944 MS.gene62195:CDS 55.0%
ACCGATCCCACGAGTTCCAC+CGG + chr3.2:62753947-62753966 None:intergenic 60.0%
ACCGGTGGAACTCGTGGGAT+CGG - chr3.2:62753943-62753962 MS.gene62195:CDS 60.0%
GGAGCAACTGTGTTGCACCG+TGG - chr3.2:62755126-62755145 MS.gene62195:intron 60.0%
TCGTCACCGGTGGAACTCGT+GGG - chr3.2:62753938-62753957 MS.gene62195:CDS 60.0%
TTCACAGCTCTCGTCACCGG+TGG - chr3.2:62753928-62753947 MS.gene62195:CDS 60.0%
CTCGTCACCGGTGGAACTCG+TGG - chr3.2:62753937-62753956 MS.gene62195:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 62753877 62755552 62753877 ID=MS.gene62195
chr3.2 mRNA 62753877 62755552 62753877 ID=MS.gene62195.t1;Parent=MS.gene62195
chr3.2 exon 62755256 62755552 62755256 ID=MS.gene62195.t1.exon1;Parent=MS.gene62195.t1
chr3.2 CDS 62755256 62755552 62755256 ID=cds.MS.gene62195.t1;Parent=MS.gene62195.t1
chr3.2 exon 62754468 62754684 62754468 ID=MS.gene62195.t1.exon2;Parent=MS.gene62195.t1
chr3.2 CDS 62754468 62754684 62754468 ID=cds.MS.gene62195.t1;Parent=MS.gene62195.t1
chr3.2 exon 62754254 62754360 62754254 ID=MS.gene62195.t1.exon3;Parent=MS.gene62195.t1
chr3.2 CDS 62754254 62754360 62754254 ID=cds.MS.gene62195.t1;Parent=MS.gene62195.t1
chr3.2 exon 62753877 62754077 62753877 ID=MS.gene62195.t1.exon4;Parent=MS.gene62195.t1
chr3.2 CDS 62753877 62754077 62753877 ID=cds.MS.gene62195.t1;Parent=MS.gene62195.t1
Gene Sequence

>MS.gene62195

ATGGCAAAGCAAGAGAACAGTAGCAGAAGCTCAAGATGGTCCCTCAAGGGATTCACAGCTCTCGTCACCGGTGGAACTCGTGGGATCGGTCATGCTATCGTAGAGGAACTTGCTGAGTTTGGTGCTATAGTGTACACTTGTTCTAGGAATGAAGAGGAGCTGAATGAACGCTTGAATGAGTGGAAGGAGAAAGGTTTTTCTGTTTATGGATCGGTTTGTGATGTGACTTCTTCTTCTCAAAGAGAGGAGCTTGTTCGAAAGGTGGCTTCTGATTTCAATGGCAAGCTCAACATACTTGTGAGTTTTTTCTTTTGTATATATTTTGTTTTGCATTTCTATATTATGTTGATTTTAAATAGGTCTAAATCAGCTTTTAATTCATGAAAGTGACTCATACAATACATATATTCGTTTTTCAACTTATTGTAAAAAATTTAGTGGAATTTTTATTTGAGAATATATTTTCATACACGTCCAAATTCCAATCATGTGTAAACGAGTCATTTAAAAAACTCTTAAACGTGTCATGAGCTCAGTTGTTAAGAACATTGCATTACATATGAAGGGATTGGTGTTCTAACGCCGGATTTCCACTTATTCACCTTAAAATGTAAGTATGCTTAACAAAATTGTAATCTTTTGATGCACTTTGTCTTTGGCCATTTAATATTTTCTTATGCTTTCTTCAAATGCCCTCAGAAGCCTGAAAATGGGATGTCTATACATATTCTCTATTTGTATTTAACAATTTTAGCATAAAGCTTAAAACAAGAAATGTTCAAATTGCTAGACTTCTTTTCTGTCACGCGTGACTTCAGCTCATACTAAATTGTGCTCATTTCATAATCTTAAATTCTAATGAACTTAGGTAAACAATGTTGGAACAAATGTGAGGAAGCCAACAATTGAGTATACAACGGAAGATTATTCAAAATTGATGAGTATTAACTTGGATTCTGCATACCATCTATGCCAACTGACATATCCTCTTCTTAAAGAATCTGGAAATGGAAGCATTGTCTTCAATTCCTCTGTTGCATCTCTGACAAACGTAGGTTCTGGAACCATATACGCAGCGTGTAAAGGTAACTATATATATCATTATGTCTTTGTTTGCTTAAACATGATTGATGGATACAAACTATTTTGACATTTACTAAAGAGATTCGATTCACCGTGCTGTTTTCTTCAGCTGCAATCAATCAGCTGACAAAAAGTCTTGCTTGTGAATGGGCAAAAGACAATATAAGGAGCAACTGTGTTGCACCGTGGTATACAAAAACGCCACTTAACGATTATGTAATGTTCTTTTCATACCTTTAATTATCCATTCAGATCCCTTATCATTTTTTTCTTTCTGAAGTTAGTTAAGTTTGTGCTGATAATAATTTGATTTGGATGAAAAAAGTGAGTAATCTTCAAATGGCAATGTTATGTTCATAACTTATGTTGCTAACTGTTTACCTTTCTTACAGCTGTATGCTAACAAAGAGTTTGTGAATGAAGTACTATCTCGAACTCCGATAAAACGGATAGCAGAAACACATGAAGTGTCTTCCTTGGTGGCTTTCCTTTGTCTGCCAGCTGCTTCCTACATCACTGGACAAGTTATTTCTGTTGATGGAGGATTTACTGCGAATGGATTTCAACCCAGCATGACCATAAGAAGTGATTAA
Protein sequence

>MS.gene62195.t1

MAKQENSSRSSRWSLKGFTALVTGGTRGIGHAIVEELAEFGAIVYTCSRNEEELNERLNEWKEKGFSVYGSVCDVTSSSQREELVRKVASDFNGKLNILVNNVGTNVRKPTIEYTTEDYSKLMSINLDSAYHLCQLTYPLLKESGNGSIVFNSSVASLTNVGSGTIYAACKAAINQLTKSLACEWAKDNIRSNCVAPWYTKTPLNDYLYANKEFVNEVLSRTPIKRIAETHEVSSLVAFLCLPAASYITGQVISVDGGFTANGFQPSMTIRSD