AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63403


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63403.t1 MTR_3g068085 95.941 271 11 0 1 271 1 271 0.0 520
MS.gene63403.t1 MTR_3g068070 88.258 264 31 0 1 264 1 264 9.76e-176 485
MS.gene63403.t1 MTR_3g068065 85.156 256 38 0 15 270 17 272 2.85e-165 459
MS.gene63403.t1 MTR_3g068155 76.692 266 62 0 6 271 10 275 2.50e-155 434
MS.gene63403.t1 MTR_3g068175 73.626 273 70 1 1 271 1 273 2.57e-148 416
MS.gene63403.t1 MTR_3g068175 72.563 277 70 2 1 271 1 277 3.71e-146 410
MS.gene63403.t1 MTR_4g064883 61.719 256 98 0 12 267 11 266 1.66e-124 355
MS.gene63403.t1 MTR_4g064887 60.305 262 104 0 1 262 1 262 1.81e-120 345
MS.gene63403.t1 MTR_7g063320 60.311 257 98 1 9 261 9 265 1.86e-112 325
MS.gene63403.t1 MTR_7g063270 60.853 258 98 1 6 260 7 264 2.46e-110 319
MS.gene63403.t1 MTR_7g063390 59.615 260 101 2 6 261 7 266 6.89e-110 318
MS.gene63403.t1 MTR_7g063360 60.385 260 99 2 6 261 7 266 9.70e-109 315
MS.gene63403.t1 MTR_7g063330 57.795 263 108 1 1 260 1 263 3.55e-108 314
MS.gene63403.t1 MTR_7g063260 58.687 259 103 1 6 260 7 265 1.07e-105 308
MS.gene63403.t1 MTR_4g064887 60.766 209 82 0 1 209 1 209 9.35e-94 276
MS.gene63403.t1 MTR_4g064883 62.626 198 74 0 12 209 11 208 8.13e-93 273
MS.gene63403.t1 MTR_7g063270 50.775 258 75 3 6 260 7 215 6.60e-81 243
MS.gene63403.t1 MTR_4g132850 32.114 246 162 4 15 259 7 248 8.02e-32 118
MS.gene63403.t1 MTR_3g085740 30.081 246 161 5 21 261 81 320 1.60e-30 116
MS.gene63403.t1 MTR_7g094510 32.283 254 148 10 20 259 11 254 2.08e-28 109
MS.gene63403.t1 MTR_7g094520 33.068 251 150 9 20 259 16 259 2.89e-28 109
MS.gene63403.t1 MTR_7g071680 31.915 282 154 8 8 260 22 294 9.39e-28 108
MS.gene63403.t1 MTR_4g058810 30.651 261 168 9 14 264 10 267 2.35e-27 107
MS.gene63403.t1 MTR_4g058840 29.730 259 171 7 15 264 11 267 2.00e-26 104
MS.gene63403.t1 MTR_4g058820 29.730 259 171 7 15 264 11 267 2.00e-26 104
MS.gene63403.t1 MTR_1196s0010 32.510 243 153 6 20 259 279 513 1.06e-24 103
MS.gene63403.t1 MTR_7g083870 30.216 278 172 8 1 260 14 287 2.78e-23 96.7
MS.gene63403.t1 MTR_4g131740 30.739 257 166 7 15 262 40 293 9.36e-22 92.4
MS.gene63403.t1 MTR_4g052350 30.651 261 160 11 15 264 14 264 1.42e-21 91.7
MS.gene63403.t1 MTR_7g107670 28.016 257 159 7 20 260 38 284 3.79e-20 88.2
MS.gene63403.t1 MTR_4g052320 28.235 255 175 6 15 264 8 259 4.49e-20 87.4
MS.gene63403.t1 MTR_3g020670 31.636 275 161 12 3 260 6 270 8.37e-20 87.0
MS.gene63403.t1 MTR_6g023990 29.104 268 171 9 4 259 2 262 1.26e-19 86.3
MS.gene63403.t1 MTR_6g023590 27.715 267 175 8 4 259 2 261 1.79e-19 85.5
MS.gene63403.t1 MTR_7g113650 31.641 256 164 8 15 262 40 292 2.32e-19 85.9
MS.gene63403.t1 MTR_3g068075 82.000 50 8 1 123 171 1 50 3.95e-19 80.1
MS.gene63403.t1 MTR_8g442750 28.125 256 169 6 15 259 14 265 5.76e-19 84.7
MS.gene63403.t1 MTR_1g051165 26.172 256 175 8 21 263 20 274 7.65e-19 84.3
MS.gene63403.t1 MTR_4g058830 34.146 164 101 6 106 264 52 213 8.36e-19 82.8
MS.gene63403.t1 MTR_4g052340 28.125 256 173 7 15 264 14 264 9.51e-19 84.0
MS.gene63403.t1 MTR_4g078630 29.670 273 168 10 3 260 8 271 1.90e-18 83.2
MS.gene63403.t1 MTR_4g052300 28.405 257 171 9 15 264 8 258 3.36e-18 82.0
MS.gene63403.t1 MTR_1g068955 30.859 256 158 9 20 263 19 267 9.54e-18 81.3
MS.gene63403.t1 MTR_1g082760 27.907 258 173 7 15 263 40 293 1.22e-17 81.3
MS.gene63403.t1 MTR_6g023600 28.090 267 174 8 4 259 2 261 3.52e-17 79.3
MS.gene63403.t1 MTR_7g105590 31.551 187 119 6 15 197 8 189 3.99e-17 77.8
MS.gene63403.t1 MTR_5g098650 68.627 51 16 0 221 271 124 174 1.98e-16 75.5
MS.gene63403.t1 MTR_6g023950 27.170 265 179 8 4 259 2 261 2.51e-16 77.0
MS.gene63403.t1 MTR_7g105460 27.500 280 177 11 4 270 2 268 2.61e-16 77.0
MS.gene63403.t1 MTR_7g105580 27.451 255 151 8 15 260 8 237 4.11e-16 76.3
MS.gene63403.t1 MTR_6g023610 27.636 275 177 10 4 265 2 267 4.54e-16 76.3
MS.gene63403.t1 MTR_2g090165 27.068 266 183 7 11 269 2 263 1.80e-15 74.7
MS.gene63403.t1 MTR_8g044240 27.632 228 149 7 15 233 69 289 5.69e-15 73.9
MS.gene63403.t1 MTR_8g089575 30.348 201 131 5 20 213 50 248 5.98e-15 73.9
MS.gene63403.t1 MTR_7g110140 27.481 262 182 6 11 267 2 260 6.13e-15 73.2
MS.gene63403.t1 MTR_6g023600 27.715 267 169 8 4 259 2 255 1.12e-14 72.4
MS.gene63403.t1 MTR_7g110130 26.641 259 177 7 11 261 2 255 1.48e-14 72.0
MS.gene63403.t1 MTR_1579s0020 35.227 88 56 1 181 268 1 87 4.96e-14 66.6
MS.gene63403.t1 MTR_4g134660 31.138 167 112 2 21 184 12 178 5.73e-14 70.1
MS.gene63403.t1 MTR_7g110160 28.016 257 157 7 11 261 2 236 9.69e-14 69.3
MS.gene63403.t1 MTR_6g041980 34.247 146 84 5 15 154 64 203 3.55e-12 65.5
MS.gene63403.t1 MTR_6g035395 27.059 255 165 7 12 261 2 240 3.75e-12 65.1
MS.gene63403.t1 MTR_3g098470 34.459 148 94 3 8 154 25 170 3.80e-12 65.9
MS.gene63403.t1 MTR_6g041980 30.144 209 122 6 15 205 64 266 6.69e-12 65.1
MS.gene63403.t1 MTR_3g113870 26.667 180 126 4 28 205 34 209 1.39e-11 63.2
MS.gene63403.t1 MTR_1275s0010 23.600 250 150 5 10 250 153 370 1.71e-11 64.3
MS.gene63403.t1 MTR_7g105570 28.191 188 116 7 94 270 46 225 1.82e-11 62.8
MS.gene63403.t1 MTR_7g080410 26.519 181 127 4 22 197 45 224 2.00e-11 63.5
MS.gene63403.t1 MTR_7g080410 26.519 181 127 4 22 197 45 224 2.76e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63403.t1 AT5G06060 69.380 258 79 0 12 269 6 263 4.68e-138 389
MS.gene63403.t1 AT2G29290 60.311 257 100 1 12 266 4 260 2.00e-118 340
MS.gene63403.t1 AT2G29260 61.176 255 99 0 12 266 65 319 2.85e-117 339
MS.gene63403.t1 AT2G29150 60.000 265 104 2 1 264 1 264 4.88e-115 331
MS.gene63403.t1 AT2G29360 59.004 261 107 0 4 264 5 265 1.11e-114 330
MS.gene63403.t1 AT1G07440 59.701 268 102 3 1 266 1 264 1.25e-114 330
MS.gene63403.t1 AT2G29350 59.091 264 107 1 1 264 1 263 7.95e-114 328
MS.gene63403.t1 AT1G07450 59.289 253 102 1 12 264 5 256 3.90e-111 321
MS.gene63403.t1 AT2G29330 60.465 258 98 3 12 266 4 260 2.98e-110 319
MS.gene63403.t1 AT2G29340 57.143 259 109 1 12 268 4 262 3.31e-109 316
MS.gene63403.t1 AT2G29340 57.588 257 107 1 12 266 4 260 1.07e-108 317
MS.gene63403.t1 AT2G30670 58.498 253 105 0 12 264 4 256 3.67e-108 314
MS.gene63403.t1 AT2G29370 54.789 261 118 0 4 264 5 265 2.42e-107 312
MS.gene63403.t1 AT2G29320 58.366 257 104 2 13 266 11 267 2.52e-105 307
MS.gene63403.t1 AT2G29310 56.917 253 109 0 12 264 4 256 4.82e-105 306
MS.gene63403.t1 AT2G29290 58.403 238 97 1 31 266 6 243 1.29e-104 304
MS.gene63403.t1 AT2G29300 56.589 258 109 2 12 266 4 261 5.97e-103 300
MS.gene63403.t1 AT2G29300 56.400 250 108 1 12 260 4 253 3.28e-99 292
MS.gene63403.t1 AT2G29350 59.111 225 91 1 40 264 2 225 1.13e-96 283
MS.gene63403.t1 AT2G29320 57.741 239 98 2 31 266 11 249 3.22e-95 280
MS.gene63403.t1 AT2G29310 55.983 234 103 0 31 264 21 254 2.02e-93 276
MS.gene63403.t1 AT2G29350 60.294 204 81 0 1 204 1 204 1.03e-88 263
MS.gene63403.t1 AT2G29340 56.061 198 87 0 12 209 4 201 4.16e-80 240
MS.gene63403.t1 AT2G29340 56.061 198 87 0 12 209 4 201 4.16e-80 240
MS.gene63403.t1 AT2G29310 56.061 198 87 0 12 209 4 201 4.19e-78 235
MS.gene63403.t1 AT2G29320 58.639 191 78 1 13 202 11 201 2.83e-77 233
MS.gene63403.t1 AT1G07440 58.140 172 69 1 1 172 1 169 1.14e-67 207
MS.gene63403.t1 AT2G29310 54.749 179 81 0 31 209 21 199 2.91e-66 205
MS.gene63403.t1 AT2G29170 57.843 102 42 1 1 101 1 102 1.09e-34 121
MS.gene63403.t1 AT4G05530 32.114 246 162 5 15 259 9 250 6.69e-32 118
MS.gene63403.t1 AT5G18210 32.950 261 160 7 10 259 3 259 1.48e-30 115
MS.gene63403.t1 AT3G03980 31.227 269 166 8 6 259 5 269 1.59e-29 112
MS.gene63403.t1 AT1G24360 30.364 247 159 7 21 261 80 319 3.91e-29 112
MS.gene63403.t1 AT4G13180 32.432 259 165 8 10 261 8 263 1.65e-28 110
MS.gene63403.t1 AT5G18210 32.234 273 156 9 10 271 3 257 1.04e-26 105
MS.gene63403.t1 AT3G46170 29.457 258 171 7 15 263 26 281 2.95e-25 101
MS.gene63403.t1 AT3G55310 30.769 260 165 11 15 263 17 272 1.10e-24 100
MS.gene63403.t1 AT1G54870 33.463 257 158 8 15 262 84 336 1.17e-24 101
MS.gene63403.t1 AT1G54870 33.463 257 158 8 15 262 82 334 1.24e-24 100
MS.gene63403.t1 AT3G55290 29.344 259 170 9 15 263 18 273 3.96e-24 98.6
MS.gene63403.t1 AT3G55290 30.000 260 167 11 15 263 17 272 4.27e-24 98.6
MS.gene63403.t1 AT1G63380 28.571 259 173 8 15 263 15 271 4.92e-24 98.6
MS.gene63403.t1 AT1G63380 28.571 259 173 8 15 263 19 275 4.96e-24 98.6
MS.gene63403.t1 AT1G63380 28.571 259 173 8 15 263 17 273 5.53e-24 98.2
MS.gene63403.t1 AT1G62610 28.185 259 174 8 15 263 13 269 6.91e-24 97.8
MS.gene63403.t1 AT1G63380 28.571 259 173 8 15 263 22 278 7.04e-24 98.2
MS.gene63403.t1 AT1G62610 28.185 259 174 8 15 263 15 271 7.16e-24 97.8
MS.gene63403.t1 AT1G62610 28.185 259 174 8 15 263 14 270 7.64e-24 97.8
MS.gene63403.t1 AT1G62610 28.185 259 174 8 15 263 19 275 9.25e-24 97.8
MS.gene63403.t1 AT3G05260 33.208 265 165 7 6 262 28 288 2.03e-23 97.1
MS.gene63403.t1 AT2G17845 28.897 263 171 9 15 264 47 306 4.49e-23 96.3
MS.gene63403.t1 AT3G04000 31.734 271 165 8 4 258 3 269 1.10e-22 94.7
MS.gene63403.t1 AT3G26760 29.699 266 169 7 8 260 30 290 3.89e-22 93.6
MS.gene63403.t1 AT3G51680 33.166 199 123 5 15 205 32 228 2.30e-20 89.0
MS.gene63403.t1 AT1G52340 29.658 263 163 8 15 260 18 275 2.56e-19 85.5
MS.gene63403.t1 AT2G47120 28.195 266 171 12 11 267 2 256 4.18e-19 84.7
MS.gene63403.t1 AT3G12800 26.070 257 174 7 15 259 10 262 4.52e-19 85.1
MS.gene63403.t1 AT2G47120 28.244 262 168 12 15 267 7 257 6.05e-19 84.3
MS.gene63403.t1 AT4G03140 26.562 256 174 6 15 260 78 329 1.55e-18 84.3
MS.gene63403.t1 AT2G47130 28.682 258 171 8 11 261 2 253 3.97e-17 79.3
MS.gene63403.t1 AT5G04900 29.778 225 141 8 18 233 80 296 1.03e-15 76.3
MS.gene63403.t1 AT3G42960 29.183 257 158 9 20 260 13 261 1.08e-14 72.8
MS.gene63403.t1 AT1G10310 33.939 165 106 3 21 184 21 183 1.24e-14 72.0
MS.gene63403.t1 AT2G47140 27.734 256 169 8 15 261 6 254 4.89e-14 70.5
MS.gene63403.t1 AT4G13250 25.581 258 153 8 19 243 163 414 1.21e-13 70.9
MS.gene63403.t1 AT1G24470 26.961 204 132 6 20 213 55 251 1.57e-13 69.7
MS.gene63403.t1 AT3G26770 25.940 266 175 7 15 264 41 300 3.63e-13 68.6
MS.gene63403.t1 AT5G10050 26.291 213 143 4 21 232 11 210 6.38e-13 67.8
MS.gene63403.t1 AT5G65205 30.556 180 114 6 21 197 12 183 6.54e-13 67.8
MS.gene63403.t1 AT3G06060 25.743 202 143 2 9 207 31 228 5.50e-12 65.5
MS.gene63403.t1 AT4G09750 30.144 209 122 6 15 205 41 243 6.20e-12 65.1
MS.gene63403.t1 AT3G06060 25.743 202 143 2 9 207 48 245 6.62e-12 65.1
MS.gene63403.t1 AT3G47350 26.540 211 140 7 20 221 49 253 1.79e-11 63.9
MS.gene63403.t1 AT3G03330 26.904 197 139 3 6 197 32 228 2.22e-11 63.5
MS.gene63403.t1 AT3G47350 26.540 211 140 7 20 221 49 253 2.35e-11 63.5

Find 50 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTCTGCTTAAAGAATC+TGG 0.325649 3.4:-69111658 MS.gene63403:CDS
AATGGGCGAAAGACAATATA+AGG 0.356013 3.4:-69111430 MS.gene63403:CDS
GGACAGATTGTTTCTGTTGA+TGG 0.357615 3.4:-69109816 MS.gene63403:CDS
GGTTCTGCTATACGCTTTAT+CGG 0.380929 3.4:+69109897 None:intergenic
GTGGAAGAACTCGCTGAGTT+TGG 0.400596 3.4:-69112161 MS.gene63403:CDS
CTGCTTAAAGAATCTGGAAA+TGG 0.406314 3.4:-69111652 MS.gene63403:CDS
GAAGCCAACAATTGAGTATA+CGG 0.419549 3.4:-69111746 MS.gene63403:CDS
CGAGAGCGTTGAATCCTTTG+AGG 0.442296 3.4:+69112219 None:intergenic
ACCGGCGGAACGCGTGGAAT+CGG 0.443421 3.4:-69112194 MS.gene63403:CDS
GGATTAGGTAATCCTCATGC+TGG 0.447027 3.4:+69109767 None:intergenic
GATGGAGGATTTACTGTGAA+TGG 0.451398 3.4:-69109798 MS.gene63403:CDS
TCAGCCGTATACTCAATTGT+TGG 0.456707 3.4:+69111742 None:intergenic
TCTCTCACAAGCATAGGTTC+TGG 0.458121 3.4:-69111601 MS.gene63403:CDS
TGCATACCATCTATGTCAAT+TGG 0.460251 3.4:-69111683 MS.gene63403:CDS
AGCGTTTATTCAGCTCCTCT+TGG 0.468728 3.4:+69112111 None:intergenic
GAAAGTGATGACTACTAACT+TGG 0.480086 3.4:-69111710 MS.gene63403:CDS
CTCGTCACCGGCGGAACGCG+TGG 0.489333 3.4:-69112200 MS.gene63403:CDS
TCCGATTCCACGCGTTCCGC+CGG 0.497124 3.4:+69112193 None:intergenic
TGAGTTTAGGTGAACAATGC+TGG 0.497981 3.4:-69111781 MS.gene63403:intron
AATGTTGCTTCTTCTTTCAA+CGG 0.501278 3.4:-69112002 MS.gene63403:CDS
CCAGCTGCTTCCTACATCAC+TGG 0.520639 3.4:-69109837 MS.gene63403:CDS
GGATTCAACGCTCTCGTCAC+CGG 0.529505 3.4:-69112212 MS.gene63403:CDS
ACCACATGAAGTGTCTTCCT+TGG 0.531653 3.4:-69109877 MS.gene63403:CDS
TGATGTAGGAAGCAGCTGGC+AGG 0.543439 3.4:+69109841 None:intergenic
TTAAACGAGTGGAAAGAGAA+AGG 0.546612 3.4:-69112089 MS.gene63403:CDS
AGCGTCTATGCAGCAAGTAA+AGG 0.551642 3.4:-69111577 MS.gene63403:intron
AACAATCTGTCCAGTGATGT+AGG 0.551671 3.4:+69109827 None:intergenic
GATGTACCAATTGACATAGA+TGG 0.556385 3.4:+69111677 None:intergenic
ATCTTCTTCTTCTCAAAGAG+AGG 0.556668 3.4:-69112036 MS.gene63403:CDS
TTTCCAGATTCTTTAAGCAG+AGG 0.567292 3.4:+69111655 None:intergenic
GATTAGGTAATCCTCATGCT+GGG 0.570838 3.4:+69109768 None:intergenic
CAGATTGTTTCTGTTGATGG+AGG 0.575569 3.4:-69109813 MS.gene63403:CDS
GAGAGCGTTGAATCCTTTGA+GGG 0.575644 3.4:+69112220 None:intergenic
AGCTCAAGATGGTCCCTCAA+AGG 0.580641 3.4:-69112233 MS.gene63403:CDS
AGGAAGCAGCTGGCAGGCAA+AGG 0.580855 3.4:+69109847 None:intergenic
CACTTGTTCTAGAAACCAAG+AGG 0.591688 3.4:-69112126 MS.gene63403:CDS
CCAGTGATGTAGGAAGCAGC+TGG 0.595402 3.4:+69109837 None:intergenic
AGCATTACATGTTCCACAAG+TGG 0.604747 3.4:+69111374 None:intergenic
GTTGCATCTCTCACAAGCAT+AGG 0.610660 3.4:-69111607 MS.gene63403:CDS
GCAGTAGCAGAAGCTCAAGA+TGG 0.612756 3.4:-69112244 MS.gene63403:CDS
ATGGATTTCAACCCAGCATG+AGG 0.617391 3.4:-69109779 MS.gene63403:CDS
TGAATAAACGCTTAAACGAG+TGG 0.622975 3.4:-69112100 MS.gene63403:CDS
GGAGCAACTGCGTTGCACCC+TGG 0.632107 3.4:-69111409 MS.gene63403:CDS
TGGAATCGGACATGCTATCG+TGG 0.642183 3.4:-69112180 MS.gene63403:CDS
TTCAACGCTCTCGTCACCGG+CGG 0.643369 3.4:-69112209 MS.gene63403:CDS
GTATACGAAAACACCACTTG+TGG 0.645433 3.4:-69111387 MS.gene63403:CDS
ACCAAGGAAGACACTTCATG+TGG 0.707139 3.4:+69109876 None:intergenic
CAGGCAAAGGAAAGTCACCA+AGG 0.712267 3.4:+69109860 None:intergenic
TCTAGAACAAGTGTAAACTG+TGG 0.727754 3.4:+69112136 None:intergenic
ACAATGCTGGAACAAATGTG+AGG 0.761871 3.4:-69111768 MS.gene63403:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAGTATTAATCTATAAA+TGG - chr3.4:69112017-69112036 MS.gene63403:CDS 15.0%
!! CAAAAGAAAATATATAGAAA+AGG + chr3.4:69110080-69110099 None:intergenic 15.0%
!!! TATTCTTCTATTTTGTTATT+AGG - chr3.4:69110808-69110827 MS.gene63403:intron 15.0%
!! AATTCTTTAGATTATTGAAC+AGG - chr3.4:69110951-69110970 MS.gene63403:intron 20.0%
!! ATCCATTATATTTAAGCAAA+AGG + chr3.4:69110509-69110528 None:intergenic 20.0%
!! TAGAACCAAAAAGAATAAAT+TGG - chr3.4:69111219-69111238 MS.gene63403:intron 20.0%
!! TTTGTAATCATGATTTGATT+TGG - chr3.4:69110741-69110760 MS.gene63403:intron 20.0%
!!! AACCTTTTGCTTAAATATAA+TGG - chr3.4:69110504-69110523 MS.gene63403:intron 20.0%
!!! AGTAACCAATTTATTCTTTT+TGG + chr3.4:69111227-69111246 None:intergenic 20.0%
!!! TTTTGCTTAAATATAATGGA+TGG - chr3.4:69110508-69110527 MS.gene63403:intron 20.0%
! AAAAAATCTTGCTTGTGAAT+GGG - chr3.4:69110583-69110602 MS.gene63403:intron 25.0%
! ATCAAAATTGCTTGCATATT+TGG - chr3.4:69110977-69110996 MS.gene63403:intron 25.0%
! ATGTATATGATACACAATTG+TGG - chr3.4:69111555-69111574 MS.gene63403:intron 25.0%
! ATTCATTTAGTATTGCATAC+AGG - chr3.4:69111453-69111472 MS.gene63403:CDS 25.0%
! ATTGAAGATATATCCAATGT+CGG + chr3.4:69110173-69110192 None:intergenic 25.0%
! ATTGGTCATTGTTTAATCAA+GGG - chr3.4:69110778-69110797 MS.gene63403:intron 25.0%
! ATTGTTTAATCAAGGGAATA+TGG - chr3.4:69110785-69110804 MS.gene63403:intron 25.0%
! CAATGTAATTACTTCCATAA+AGG - chr3.4:69111117-69111136 MS.gene63403:intron 25.0%
! CATACGAATAAGAAATGAAT+TGG - chr3.4:69111761-69111780 MS.gene63403:CDS 25.0%
! TAAAAAAAATGACAAAGCCA+TGG + chr3.4:69110706-69110725 None:intergenic 25.0%
! TACTCTTATCACAAGTTTAA+TGG - chr3.4:69111046-69111065 MS.gene63403:intron 25.0%
! TCAAAATTGCTTGCATATTT+GGG - chr3.4:69110978-69110997 MS.gene63403:intron 25.0%
! TGATTATCAAATGACCTTTA+TGG + chr3.4:69111134-69111153 None:intergenic 25.0%
! TTCATTTAGTATTGCATACA+GGG - chr3.4:69111454-69111473 MS.gene63403:CDS 25.0%
!! GACATACTAAAACATGATTT+TGG + chr3.4:69111615-69111634 None:intergenic 25.0%
!!! ACATTCATACTCATTTTTGT+AGG - chr3.4:69110870-69110889 MS.gene63403:intron 25.0%
AATTCACAATATTTGCACCT+AGG - chr3.4:69111178-69111197 MS.gene63403:intron 30.0%
ACCTTCAATTATTCATTCCA+TGG - chr3.4:69110686-69110705 MS.gene63403:intron 30.0%
AGTCCTCAACTATAAAAGAT+TGG + chr3.4:69111637-69111656 None:intergenic 30.0%
ATAGTTGAGGACTGTATATT+TGG - chr3.4:69111644-69111663 MS.gene63403:CDS 30.0%
ATTAATACTACATGAGCACA+CGG + chr3.4:69112010-69112029 None:intergenic 30.0%
ATTCACAATATTTGCACCTA+GGG - chr3.4:69111179-69111198 MS.gene63403:intron 30.0%
CAAAAAATCTTGCTTGTGAA+TGG - chr3.4:69110582-69110601 MS.gene63403:intron 30.0%
TATGATGTTCTTGTGAGTTT+AGG - chr3.4:69110236-69110255 MS.gene63403:intron 30.0%
TTAAACAATGACCAATCAGT+CGG + chr3.4:69110774-69110793 None:intergenic 30.0%
! AATGTTGCTTCTTCTTTCAA+CGG - chr3.4:69110028-69110047 MS.gene63403:intron 30.0%
! ATATCTTCAATCAGAAGTGT+CGG - chr3.4:69110182-69110201 MS.gene63403:intron 30.0%
! GATTGGTCATTGTTTAATCA+AGG - chr3.4:69110777-69110796 MS.gene63403:intron 30.0%
! TGTCCAATCTTTTATAGTTG+AGG - chr3.4:69111631-69111650 MS.gene63403:CDS 30.0%
! TTAATGGTTTTCCATGTTGA+CGG - chr3.4:69111062-69111081 MS.gene63403:intron 30.0%
!! AAGAAATGAATTGGCTTTGA+GGG - chr3.4:69111770-69111789 MS.gene63403:CDS 30.0%
!! TAAGAAATGAATTGGCTTTG+AGG - chr3.4:69111769-69111788 MS.gene63403:CDS 30.0%
!!! ACTTTTTTGTTAAGACGCAT+GGG - chr3.4:69111813-69111832 MS.gene63403:intron 30.0%
!!! TTTTGGTTCTAACTGACAAA+TGG + chr3.4:69111210-69111229 None:intergenic 30.0%
AATGGGCGAAAGACAATATA+AGG - chr3.4:69110600-69110619 MS.gene63403:intron 35.0%
AATTGCTTGCATATTTGGGA+TGG - chr3.4:69110982-69111001 MS.gene63403:intron 35.0%
ACATACGTGAATCAAACAGA+AGG + chr3.4:69111539-69111558 None:intergenic 35.0%
ATCCCTTCACAAATTGTCTA+TGG - chr3.4:69111353-69111372 MS.gene63403:intron 35.0%
ATCTTCTTCTTCTCAAAGAG+AGG - chr3.4:69109994-69110013 MS.gene63403:intron 35.0%
CTGCTTAAAGAATCTGGAAA+TGG - chr3.4:69110378-69110397 MS.gene63403:intron 35.0%
GAAAGTGATGACTACTAACT+TGG - chr3.4:69110320-69110339 MS.gene63403:intron 35.0%
GAAGCCAACAATTGAGTATA+CGG - chr3.4:69110284-69110303 MS.gene63403:intron 35.0%
GAGGACTGTATATTTGGATA+TGG - chr3.4:69111650-69111669 MS.gene63403:CDS 35.0%
GATGTACCAATTGACATAGA+TGG + chr3.4:69110356-69110375 None:intergenic 35.0%
GCCATGGAATGAATAATTGA+AGG + chr3.4:69110690-69110709 None:intergenic 35.0%
TAATCGTCAGTGTTGTCAAA+TGG + chr3.4:69111419-69111438 None:intergenic 35.0%
TGAATAAACGCTTAAACGAG+TGG - chr3.4:69109930-69109949 MS.gene63403:CDS 35.0%
TGCATACCATCTATGTCAAT+TGG - chr3.4:69110347-69110366 MS.gene63403:intron 35.0%
TTAAACGAGTGGAAAGAGAA+AGG - chr3.4:69109941-69109960 MS.gene63403:CDS 35.0%
TTGGTTTATCTGTGTATGGA+GGG - chr3.4:69111919-69111938 MS.gene63403:intron 35.0%
TTTCCAGATTCTTTAAGCAG+AGG + chr3.4:69110378-69110397 None:intergenic 35.0%
! GAGAAAGGTTTTTCTGTTCA+TGG - chr3.4:69109956-69109975 MS.gene63403:intron 35.0%
! GATACATTTTTCCGTCAACA+TGG + chr3.4:69111076-69111095 None:intergenic 35.0%
! TCTAGAACAAGTGTAAACTG+TGG + chr3.4:69109897-69109916 None:intergenic 35.0%
! TGGCTCTTTAACATTTTTCC+TGG - chr3.4:69111838-69111857 MS.gene63403:intron 35.0%
!! ATGATTTTGGCATCTTCACA+TGG + chr3.4:69111602-69111621 None:intergenic 35.0%
!!! GACTTTTTTGTTAAGACGCA+TGG - chr3.4:69111812-69111831 MS.gene63403:intron 35.0%
AACAATCTGTCCAGTGATGT+AGG + chr3.4:69112206-69112225 None:intergenic 40.0%
AACAGAAGGCAGTGGAATTA+TGG + chr3.4:69111525-69111544 None:intergenic 40.0%
ACAATGCTGGAACAAATGTG+AGG - chr3.4:69110262-69110281 MS.gene63403:intron 40.0%
ACAGTTGTAGCAAGTGATTC+TGG - chr3.4:69111705-69111724 MS.gene63403:CDS 40.0%
AGCATTACATGTTCCACAAG+TGG + chr3.4:69110659-69110678 None:intergenic 40.0%
CACATGGATCAAGGTAACAT+TGG + chr3.4:69111586-69111605 None:intergenic 40.0%
CAGTTGTAGCAAGTGATTCT+GGG - chr3.4:69111706-69111725 MS.gene63403:CDS 40.0%
CATCCTCTGCTTAAAGAATC+TGG - chr3.4:69110372-69110391 MS.gene63403:intron 40.0%
CCTTCACAAATTGTCTATGG+CGG - chr3.4:69111356-69111375 MS.gene63403:intron 40.0%
CGCCATAGACAATTTGTGAA+GGG + chr3.4:69111358-69111377 None:intergenic 40.0%
GATGGAGGATTTACTGTGAA+TGG - chr3.4:69112232-69112251 MS.gene63403:CDS 40.0%
GGGCATCAATATGGCAAATA+TGG - chr3.4:69111790-69111809 MS.gene63403:intron 40.0%
GGTTCTGCTATACGCTTTAT+CGG + chr3.4:69112136-69112155 None:intergenic 40.0%
GTACTTGTCTGTAGTCTTTG+AGG - chr3.4:69110922-69110941 MS.gene63403:intron 40.0%
GTATACGAAAACACCACTTG+TGG - chr3.4:69110643-69110662 MS.gene63403:intron 40.0%
TCAGCCGTATACTCAATTGT+TGG + chr3.4:69110291-69110310 None:intergenic 40.0%
TGAGTTTAGGTGAACAATGC+TGG - chr3.4:69110249-69110268 MS.gene63403:intron 40.0%
TTTGTTAAGACGCATGGGTT+TGG - chr3.4:69111818-69111837 MS.gene63403:intron 40.0%
! AAGTGGTGTTTTCGTATACC+AGG + chr3.4:69110642-69110661 None:intergenic 40.0%
! AGTGGTGTTTTCGTATACCA+GGG + chr3.4:69110641-69110660 None:intergenic 40.0%
! GTTGGTTTATCTGTGTATGG+AGG - chr3.4:69111918-69111937 MS.gene63403:intron 40.0%
! TGGAGGGTTTTCTGCTATAT+AGG - chr3.4:69111935-69111954 MS.gene63403:intron 40.0%
!! CACTTGTTCTAGAAACCAAG+AGG - chr3.4:69109904-69109923 MS.gene63403:CDS 40.0%
!! CAGATTGTTTCTGTTGATGG+AGG - chr3.4:69112217-69112236 MS.gene63403:CDS 40.0%
!! GGACAGATTGTTTCTGTTGA+TGG - chr3.4:69112214-69112233 MS.gene63403:CDS 40.0%
!! GTGGTTGGTTTATCTGTGTA+TGG - chr3.4:69111915-69111934 MS.gene63403:intron 40.0%
ACCAAGGAAGACACTTCATG+TGG + chr3.4:69112157-69112176 None:intergenic 45.0%
AGCGTCTATGCAGCAAGTAA+AGG - chr3.4:69110453-69110472 MS.gene63403:intron 45.0%
AGCGTTTATTCAGCTCCTCT+TGG + chr3.4:69109922-69109941 None:intergenic 45.0%
ATGGATTTCAACCCAGCATG+AGG - chr3.4:69112251-69112270 MS.gene63403:CDS 45.0%
CCGCCATAGACAATTTGTGA+AGG + chr3.4:69111359-69111378 None:intergenic 45.0%
CGATGGTGCAATATGACAGA+AGG - chr3.4:69111276-69111295 MS.gene63403:intron 45.0%
GTGAATCAAACAGAAGGCAG+TGG + chr3.4:69111533-69111552 None:intergenic 45.0%
GTGATTACCAGTGTTGTCGA+TGG - chr3.4:69111259-69111278 MS.gene63403:intron 45.0%
GTTGCATCTCTCACAAGCAT+AGG - chr3.4:69110423-69110442 MS.gene63403:intron 45.0%
TATTGCACCATCGACAACAC+TGG + chr3.4:69111269-69111288 None:intergenic 45.0%
TCTCTCACAAGCATAGGTTC+TGG - chr3.4:69110429-69110448 MS.gene63403:intron 45.0%
TGGCATCTTCACATGGATCA+AGG + chr3.4:69111595-69111614 None:intergenic 45.0%
TTGTAGCAAGTGATTCTGGG+TGG - chr3.4:69111709-69111728 MS.gene63403:CDS 45.0%
! ACCACATGAAGTGTCTTCCT+TGG - chr3.4:69112153-69112172 MS.gene63403:CDS 45.0%
! GCTGCAATGGCGTATTTCTA+TGG + chr3.4:69111312-69111331 None:intergenic 45.0%
! TTGGATGAACACCGACTGAT+TGG - chr3.4:69110760-69110779 MS.gene63403:intron 45.0%
!! GAGAGCGTTGAATCCTTTGA+GGG + chr3.4:69109813-69109832 None:intergenic 45.0%
!! TGGCTTTGAGGGCATCAATA+TGG - chr3.4:69111781-69111800 MS.gene63403:intron 45.0%
ACCACCTACACAAACACAGC+AGG + chr3.4:69111900-69111919 None:intergenic 50.0%
ACTAGAGCATGTGCAGATCC+AGG + chr3.4:69111859-69111878 None:intergenic 50.0%
AGCTCAAGATGGTCCCTCAA+AGG - chr3.4:69109797-69109816 MS.gene63403:CDS 50.0%
CAGGCAAAGGAAAGTCACCA+AGG + chr3.4:69112173-69112192 None:intergenic 50.0%
CATGTGTCTGTGTCCGACAT+TGG - chr3.4:69110157-69110176 MS.gene63403:intron 50.0%
GCAGTAGCAGAAGCTCAAGA+TGG - chr3.4:69109786-69109805 MS.gene63403:CDS 50.0%
GCTGTGTTTGTGTAGGTGGT+TGG - chr3.4:69111900-69111919 MS.gene63403:intron 50.0%
GTGGAAGAACTCGCTGAGTT+TGG - chr3.4:69109869-69109888 MS.gene63403:CDS 50.0%
GTGTTGTCAAATGGCTGCCA+TGG + chr3.4:69111410-69111429 None:intergenic 50.0%
TGGAATCGGACATGCTATCG+TGG - chr3.4:69109850-69109869 MS.gene63403:CDS 50.0%
TGTGCCTGCTGTGTTTGTGT+AGG - chr3.4:69111893-69111912 MS.gene63403:intron 50.0%
!! CGAGAGCGTTGAATCCTTTG+AGG + chr3.4:69109814-69109833 None:intergenic 50.0%
ACCGACACGTCATTCTGCCA+TGG - chr3.4:69111390-69111409 MS.gene63403:CDS 55.0%
CCAGCTGCTTCCTACATCAC+TGG - chr3.4:69112193-69112212 MS.gene63403:CDS 55.0%
CCAGTGATGTAGGAAGCAGC+TGG + chr3.4:69112196-69112215 None:intergenic 55.0%
CTGACAAATGGCGCTTCCCT+AGG + chr3.4:69111198-69111217 None:intergenic 55.0%
GCCATGGCAGAATGACGTGT+CGG + chr3.4:69111394-69111413 None:intergenic 55.0%
GCCTGCTGTGTTTGTGTAGG+TGG - chr3.4:69111896-69111915 MS.gene63403:intron 55.0%
GGATTCAACGCTCTCGTCAC+CGG - chr3.4:69109818-69109837 MS.gene63403:CDS 55.0%
TGATGTAGGAAGCAGCTGGC+AGG + chr3.4:69112192-69112211 None:intergenic 55.0%
TGGCATGGCATAGGCTGCAA+TGG + chr3.4:69111325-69111344 None:intergenic 55.0%
TTGCAGCCTATGCCATGCCA+TGG - chr3.4:69111325-69111344 MS.gene63403:intron 55.0%
TTGTGAAGGGATGCCTGCCA+TGG + chr3.4:69111345-69111364 None:intergenic 55.0%
AAGGGATGCCTGCCATGGCA+TGG + chr3.4:69111340-69111359 None:intergenic 60.0%
AGCCTATGCCATGCCATGGC+AGG - chr3.4:69111329-69111348 MS.gene63403:intron 60.0%
AGGAAGCAGCTGGCAGGCAA+AGG + chr3.4:69112186-69112205 None:intergenic 60.0%
TGCCTGCCATGGCATGGCAT+AGG + chr3.4:69111334-69111353 None:intergenic 60.0%
TTCAACGCTCTCGTCACCGG+CGG - chr3.4:69109821-69109840 MS.gene63403:CDS 60.0%
ACCGGCGGAACGCGTGGAAT+CGG - chr3.4:69109836-69109855 MS.gene63403:CDS 65.0%
GGAGCAACTGCGTTGCACCC+TGG - chr3.4:69110621-69110640 MS.gene63403:intron 65.0%
TCCGATTCCACGCGTTCCGC+CGG + chr3.4:69109840-69109859 None:intergenic 65.0%
CTCGTCACCGGCGGAACGCG+TGG - chr3.4:69109830-69109849 MS.gene63403:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 69109770 69112282 69109770 ID=MS.gene63403
chr3.4 mRNA 69109770 69112282 69109770 ID=MS.gene63403.t1;Parent=MS.gene63403
chr3.4 exon 69111986 69112282 69111986 ID=MS.gene63403.t1.exon1;Parent=MS.gene63403.t1
chr3.4 CDS 69111986 69112282 69111986 ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
chr3.4 exon 69111578 69111794 69111578 ID=MS.gene63403.t1.exon2;Parent=MS.gene63403.t1
chr3.4 CDS 69111578 69111794 69111578 ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
chr3.4 exon 69111382 69111488 69111382 ID=MS.gene63403.t1.exon3;Parent=MS.gene63403.t1
chr3.4 CDS 69111382 69111488 69111382 ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
chr3.4 exon 69109770 69109964 69109770 ID=MS.gene63403.t1.exon4;Parent=MS.gene63403.t1
chr3.4 CDS 69109770 69109964 69109770 ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
Gene Sequence

>MS.gene63403

ATGGCGAACGCAGAGAGCAGTAGCAGAAGCTCAAGATGGTCCCTCAAAGGATTCAACGCTCTCGTCACCGGCGGAACGCGTGGAATCGGACATGCTATCGTGGAAGAACTCGCTGAGTTTGGTGCCACAGTTTACACTTGTTCTAGAAACCAAGAGGAGCTGAATAAACGCTTAAACGAGTGGAAAGAGAAAGGTTTTTCTGTTCATGGATCTGTTTGTGATGCATCTTCTTCTTCTCAAAGAGAGGAGCTTATTCGAAATGTTGCTTCTTCTTTCAACGGCAAACTCAACATATTTGTGAGTTTTTCCTTTTCTATATATTTTCTTTTGCATTTGTATATAATGTTGATATTGAAATTAAGAAAATGACGTAATTGTATGTAATCACATGTGTCTGTGTCCGACATTGGATATATCTTCAATCAGAAGTGTCGGTGTTATGTTATGACTTCAGCTCATATGTTGATATGATGTTCTTGTGAGTTTAGGTGAACAATGCTGGAACAAATGTGAGGAAGCCAACAATTGAGTATACGGCTGAAGATTATTCGAAAGTGATGACTACTAACTTGGATTCTGCATACCATCTATGTCAATTGGTACATCCTCTGCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCATCTCTCACAAGCATAGGTTCTGGAAGCGTCTATGCAGCAAGTAAAGGTAATTCAATGTATCATTATGTTATCTTTAACCTTTTGCTTAAATATAATGGATGGAAACTAAAAAATTCATTGTGTTGTTTTCTTCAGCTGCAATCAATCAGTTGACAAAAAATCTTGCTTGTGAATGGGCGAAAGACAATATAAGGAGCAACTGCGTTGCACCCTGGTATACGAAAACACCACTTGTGGAACATGTAATGCTCTTTCACACCTTCAATTATTCATTCCATGGCTTTGTCATTTTTTTTATGAATATTGTTTGAATTTGTAATCATGATTTGATTTGGATGAACACCGACTGATTGGTCATTGTTTAATCAAGGGAATATGGTATTCTTCTATTTTGTTATTAGGTTCTTCATAGTAAATAATGATCTGTTCTTTGATGTTTTTACATTCATACTCATTTTTGTAGGATTAGTAAGAATTAAGATACAACTTAGAAGTACTTGTCTGTAGTCTTTGAGGCTCGATAATTCTTTAGATTATTGAACAGGAAAATCAAAATTGCTTGCATATTTGGGATGGCTCATATAGAGTCTTGTATAGCTGCATTGTGATTTCATTAGTACTCTTATCACAAGTTTAATGGTTTTCCATGTTGACGGAAAAATGTATCTTTTAGTGTTTTGTTTTCAATCAATGTAATTACTTCCATAAAGGTCATTTGATAATCAGACACTTTAAAGCATTAACAAACAAATTCACAATATTTGCACCTAGGGAAGCGCCATTTGTCAGTTAGAACCAAAAAGAATAAATTGGTTACTTCTTTCTTCTCAGTGATTACCAGTGTTGTCGATGGTGCAATATGACAGAAGGCTAAAATACGCCATAGAAATACGCCATTGCAGCCTATGCCATGCCATGGCAGGCATCCCTTCACAAATTGTCTATGGCGGTTGTCATAAAAACCGACACGTCATTCTGCCATGGCAGCCATTTGACAACACTGACGATTACTTGCATTACATAAATTCATTTAGTATTGCATACAGGGTGACTTAAATGACAACTTTTTAACTGATCTGACAGTTTTTCTTCTCCATAATTCCACTGCCTTCTGTTTGATTCACGTATGTATATGATACACAATTGTGGCTCATCCAATGTTACCTTGATCCATGTGAAGATGCCAAAATCATGTTTTAGTATGTCCAATCTTTTATAGTTGAGGACTGTATATTTGGATATGGAACATTGATCTTTCTATGTGTTATTGTATTACACAGTTGTAGCAAGTGATTCTGGGTGGTCGTTTAGAATAAACTTCTTAAATTAATACATACGAATAAGAAATGAATTGGCTTTGAGGGCATCAATATGGCAAATATGGACTTTTTTGTTAAGACGCATGGGTTTGGCTCTTTAACATTTTTCCTGGATCTGCACATGCTCTAGTGTAGTGTGCTGTGCTGTGCCTGCTGTGTTTGTGTAGGTGGTTGGTTTATCTGTGTATGGAGGGTTTTCTGCTATATAGGCTAACTCATTAAGTGCTGATGAATCAAAACACATCTGTGACTCTAATGTCCGTGTGCTCATGTAGTATTAATCTATAAATGGCAATGTTATGTTCATAACTTGTGTTGCGAATTGTTGTCTTTCTTACAGTTAATTGCTAACGAAGAGTTTGTGAATCAAGTGCTGTCTCGAACACCGATAAAGCGTATAGCAGAACCACATGAAGTGTCTTCCTTGGTGACTTTCCTTTGCCTGCCAGCTGCTTCCTACATCACTGGACAGATTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCATGAGGATTACCTAA

Protein sequence

>MS.gene63403.t1

MANAESSSRSSRWSLKGFNALVTGGTRGIGHAIVEELAEFGATVYTCSRNQEELNKRLNEWKEKGFSVHGSVCDASSSSQREELIRNVASSFNGKLNIFVNNAGTNVRKPTIEYTAEDYSKVMTTNLDSAYHLCQLVHPLLKESGNGSIVFISSVASLTSIGSGSVYAASKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTPLVEHLIANEEFVNQVLSRTPIKRIAEPHEVSSLVTFLCLPAASYITGQIVSVDGGFTVNGFQPSMRIT