AlfalfaGEDB | MS.gene63403

M. sativa cultivar XinJiangDaYe / MS.gene63403

KEGG: K08081
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF13561.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63403.t1	XP_013460705.1	95.9	271	11	0	1	271	1	271	9.50E-143	516.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63403.t1	Q9LHT0	69.4	258	79	0	12	269	6	263	2.4e-102	373.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63403.t1	A0A072UY55	95.9	271	11	0	1	271	1	271	6.9e-143	516.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene63403	0.811622	6.39E-51	-1.69E-46
MS.gene050301	MS.gene63403	0.811512	6.75E-51	-1.69E-46
MS.gene050558	MS.gene63403	0.835809	1.35E-56	-1.69E-46
MS.gene051663	MS.gene63403	0.809817	1.57E-50	-1.69E-46
MS.gene051860	MS.gene63403	0.807145	5.83E-50	-1.69E-46
MS.gene053630	MS.gene63403	0.808672	2.76E-50	-1.69E-46
MS.gene053836	MS.gene63403	0.84601	2.84E-59	-1.69E-46
MS.gene055422	MS.gene63403	0.804885	1.74E-49	-1.69E-46
MS.gene057121	MS.gene63403	0.856537	3.01E-62	-1.69E-46
MS.gene057260	MS.gene63403	0.815221	1.03E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003926	MS.gene63403	PPI
MS.gene007006	MS.gene63403	PPI
MS.gene012681	MS.gene63403	PPI
MS.gene012794	MS.gene63403	PPI
MS.gene033685	MS.gene63403	PPI
MS.gene050431	MS.gene63403	PPI
MS.gene050432	MS.gene63403	PPI
MS.gene056339	MS.gene63403	PPI
MS.gene073684	MS.gene63403	PPI
MS.gene08694	MS.gene63403	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63403.t1	MTR_3g068085	95.941	271	11	0	1	271	1	271	0.0	520
MS.gene63403.t1	MTR_3g068070	88.258	264	31	0	1	264	1	264	9.76e-176	485
MS.gene63403.t1	MTR_3g068065	85.156	256	38	0	15	270	17	272	2.85e-165	459
MS.gene63403.t1	MTR_3g068155	76.692	266	62	0	6	271	10	275	2.50e-155	434
MS.gene63403.t1	MTR_3g068175	73.626	273	70	1	1	271	1	273	2.57e-148	416
MS.gene63403.t1	MTR_3g068175	72.563	277	70	2	1	271	1	277	3.71e-146	410
MS.gene63403.t1	MTR_4g064883	61.719	256	98	0	12	267	11	266	1.66e-124	355
MS.gene63403.t1	MTR_4g064887	60.305	262	104	0	1	262	1	262	1.81e-120	345
MS.gene63403.t1	MTR_7g063320	60.311	257	98	1	9	261	9	265	1.86e-112	325
MS.gene63403.t1	MTR_7g063270	60.853	258	98	1	6	260	7	264	2.46e-110	319

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63403.t1	AT5G06060	69.380	258	79	0	12	269	6	263	4.68e-138	389
MS.gene63403.t1	AT2G29290	60.311	257	100	1	12	266	4	260	2.00e-118	340
MS.gene63403.t1	AT2G29260	61.176	255	99	0	12	266	65	319	2.85e-117	339
MS.gene63403.t1	AT2G29150	60.000	265	104	2	1	264	1	264	4.88e-115	331
MS.gene63403.t1	AT2G29360	59.004	261	107	0	4	264	5	265	1.11e-114	330
MS.gene63403.t1	AT1G07440	59.701	268	102	3	1	266	1	264	1.25e-114	330
MS.gene63403.t1	AT2G29350	59.091	264	107	1	1	264	1	263	7.95e-114	328
MS.gene63403.t1	AT1G07450	59.289	253	102	1	12	264	5	256	3.90e-111	321
MS.gene63403.t1	AT2G29330	60.465	258	98	3	12	266	4	260	2.98e-110	319
MS.gene63403.t1	AT2G29340	57.143	259	109	1	12	268	4	262	3.31e-109	316

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Find 50 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATCTGTCCAGTGATGT+AGG	0.551671	3.4:+69109827	None:intergenic
AATGGGCGAAAGACAATATA+AGG	0.356013	3.4:-69111430	MS.gene63403:CDS
AATGTTGCTTCTTCTTTCAA+CGG	0.501278	3.4:-69112002	MS.gene63403:CDS
ACAATGCTGGAACAAATGTG+AGG	0.761871	3.4:-69111768	MS.gene63403:CDS
ACCAAGGAAGACACTTCATG+TGG	0.707139	3.4:+69109876	None:intergenic
ACCACATGAAGTGTCTTCCT+TGG	0.531653	3.4:-69109877	MS.gene63403:CDS
ACCGGCGGAACGCGTGGAAT+CGG	0.443421	3.4:-69112194	MS.gene63403:CDS
AGCATTACATGTTCCACAAG+TGG	0.604747	3.4:+69111374	None:intergenic
AGCGTCTATGCAGCAAGTAA+AGG	0.551642	3.4:-69111577	MS.gene63403:intron
AGCGTTTATTCAGCTCCTCT+TGG	0.468728	3.4:+69112111	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCACAATATTTGCACCT+AGG	-	chr3.4:69111178-69111197	MS.gene63403:intron	30.0%
ACCTTCAATTATTCATTCCA+TGG	-	chr3.4:69110686-69110705	MS.gene63403:intron	30.0%
AGTCCTCAACTATAAAAGAT+TGG	+	chr3.4:69111637-69111656	None:intergenic	30.0%
ATAGTTGAGGACTGTATATT+TGG	-	chr3.4:69111644-69111663	MS.gene63403:CDS	30.0%
ATTAATACTACATGAGCACA+CGG	+	chr3.4:69112010-69112029	None:intergenic	30.0%
ATTCACAATATTTGCACCTA+GGG	-	chr3.4:69111179-69111198	MS.gene63403:intron	30.0%
CAAAAAATCTTGCTTGTGAA+TGG	-	chr3.4:69110582-69110601	MS.gene63403:intron	30.0%
TATGATGTTCTTGTGAGTTT+AGG	-	chr3.4:69110236-69110255	MS.gene63403:intron	30.0%
TTAAACAATGACCAATCAGT+CGG	+	chr3.4:69110774-69110793	None:intergenic	30.0%
AATGGGCGAAAGACAATATA+AGG	-	chr3.4:69110600-69110619	MS.gene63403:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	69109770	69112282	69109770	ID=MS.gene63403
chr3.4	mRNA	69109770	69112282	69109770	ID=MS.gene63403.t1;Parent=MS.gene63403
chr3.4	exon	69111986	69112282	69111986	ID=MS.gene63403.t1.exon1;Parent=MS.gene63403.t1
chr3.4	CDS	69111986	69112282	69111986	ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
chr3.4	exon	69111578	69111794	69111578	ID=MS.gene63403.t1.exon2;Parent=MS.gene63403.t1
chr3.4	CDS	69111578	69111794	69111578	ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
chr3.4	exon	69111382	69111488	69111382	ID=MS.gene63403.t1.exon3;Parent=MS.gene63403.t1
chr3.4	CDS	69111382	69111488	69111382	ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1
chr3.4	exon	69109770	69109964	69109770	ID=MS.gene63403.t1.exon4;Parent=MS.gene63403.t1
chr3.4	CDS	69109770	69109964	69109770	ID=cds.MS.gene63403.t1;Parent=MS.gene63403.t1

Gene Sequence

>MS.gene63403

ATGGCGAACGCAGAGAGCAGTAGCAGAAGCTCAAGATGGTCCCTCAAAGGATTCAACGCTCTCGTCACCGGCGGAACGCGTGGAATCGGACATGCTATCGTGGAAGAACTCGCTGAGTTTGGTGCCACAGTTTACACTTGTTCTAGAAACCAAGAGGAGCTGAATAAACGCTTAAACGAGTGGAAAGAGAAAGGTTTTTCTGTTCATGGATCTGTTTGTGATGCATCTTCTTCTTCTCAAAGAGAGGAGCTTATTCGAAATGTTGCTTCTTCTTTCAACGGCAAACTCAACATATTTGTGAGTTTTTCCTTTTCTATATATTTTCTTTTGCATTTGTATATAATGTTGATATTGAAATTAAGAAAATGACGTAATTGTATGTAATCACATGTGTCTGTGTCCGACATTGGATATATCTTCAATCAGAAGTGTCGGTGTTATGTTATGACTTCAGCTCATATGTTGATATGATGTTCTTGTGAGTTTAGGTGAACAATGCTGGAACAAATGTGAGGAAGCCAACAATTGAGTATACGGCTGAAGATTATTCGAAAGTGATGACTACTAACTTGGATTCTGCATACCATCTATGTCAATTGGTACATCCTCTGCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCATCTCTCACAAGCATAGGTTCTGGAAGCGTCTATGCAGCAAGTAAAGGTAATTCAATGTATCATTATGTTATCTTTAACCTTTTGCTTAAATATAATGGATGGAAACTAAAAAATTCATTGTGTTGTTTTCTTCAGCTGCAATCAATCAGTTGACAAAAAATCTTGCTTGTGAATGGGCGAAAGACAATATAAGGAGCAACTGCGTTGCACCCTGGTATACGAAAACACCACTTGTGGAACATGTAATGCTCTTTCACACCTTCAATTATTCATTCCATGGCTTTGTCATTTTTTTTATGAATATTGTTTGAATTTGTAATCATGATTTGATTTGGATGAACACCGACTGATTGGTCATTGTTTAATCAAGGGAATATGGTATTCTTCTATTTTGTTATTAGGTTCTTCATAGTAAATAATGATCTGTTCTTTGATGTTTTTACATTCATACTCATTTTTGTAGGATTAGTAAGAATTAAGATACAACTTAGAAGTACTTGTCTGTAGTCTTTGAGGCTCGATAATTCTTTAGATTATTGAACAGGAAAATCAAAATTGCTTGCATATTTGGGATGGCTCATATAGAGTCTTGTATAGCTGCATTGTGATTTCATTAGTACTCTTATCACAAGTTTAATGGTTTTCCATGTTGACGGAAAAATGTATCTTTTAGTGTTTTGTTTTCAATCAATGTAATTACTTCCATAAAGGTCATTTGATAATCAGACACTTTAAAGCATTAACAAACAAATTCACAATATTTGCACCTAGGGAAGCGCCATTTGTCAGTTAGAACCAAAAAGAATAAATTGGTTACTTCTTTCTTCTCAGTGATTACCAGTGTTGTCGATGGTGCAATATGACAGAAGGCTAAAATACGCCATAGAAATACGCCATTGCAGCCTATGCCATGCCATGGCAGGCATCCCTTCACAAATTGTCTATGGCGGTTGTCATAAAAACCGACACGTCATTCTGCCATGGCAGCCATTTGACAACACTGACGATTACTTGCATTACATAAATTCATTTAGTATTGCATACAGGGTGACTTAAATGACAACTTTTTAACTGATCTGACAGTTTTTCTTCTCCATAATTCCACTGCCTTCTGTTTGATTCACGTATGTATATGATACACAATTGTGGCTCATCCAATGTTACCTTGATCCATGTGAAGATGCCAAAATCATGTTTTAGTATGTCCAATCTTTTATAGTTGAGGACTGTATATTTGGATATGGAACATTGATCTTTCTATGTGTTATTGTATTACACAGTTGTAGCAAGTGATTCTGGGTGGTCGTTTAGAATAAACTTCTTAAATTAATACATACGAATAAGAAATGAATTGGCTTTGAGGGCATCAATATGGCAAATATGGACTTTTTTGTTAAGACGCATGGGTTTGGCTCTTTAACATTTTTCCTGGATCTGCACATGCTCTAGTGTAGTGTGCTGTGCTGTGCCTGCTGTGTTTGTGTAGGTGGTTGGTTTATCTGTGTATGGAGGGTTTTCTGCTATATAGGCTAACTCATTAAGTGCTGATGAATCAAAACACATCTGTGACTCTAATGTCCGTGTGCTCATGTAGTATTAATCTATAAATGGCAATGTTATGTTCATAACTTGTGTTGCGAATTGTTGTCTTTCTTACAGTTAATTGCTAACGAAGAGTTTGTGAATCAAGTGCTGTCTCGAACACCGATAAAGCGTATAGCAGAACCACATGAAGTGTCTTCCTTGGTGACTTTCCTTTGCCTGCCAGCTGCTTCCTACATCACTGGACAGATTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCATGAGGATTACCTAA

Protein sequence

>MS.gene63403.t1

MANAESSSRSSRWSLKGFNALVTGGTRGIGHAIVEELAEFGATVYTCSRNQEELNKRLNEWKEKGFSVHGSVCDASSSSQREELIRNVASSFNGKLNIFVNNAGTNVRKPTIEYTAEDYSKVMTTNLDSAYHLCQLVHPLLKESGNGSIVFISSVASLTSIGSGSVYAASKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTPLVEHLIANEEFVNQVLSRTPIKRIAEPHEVSSLVTFLCLPAASYITGQIVSVDGGFTVNGFQPSMRIT