Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54548.t1 | XP_003588491.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 4.80E-131 | 477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54548.t1 | Q9LBG2 | 28.8 | 271 | 165 | 9 | 2 | 255 | 5 | 264 | 3.0e-17 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54548.t1 | G7I3F7 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 3.4e-131 | 477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene54548 | 0.856471 | 3.15E-62 | -1.69E-46 |
| MS.gene04918 | MS.gene54548 | 0.824084 | 9.78E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene54548 | 0.813027 | 3.15E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene54548 | 0.822918 | 1.83E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene54548 | 0.818745 | 1.67E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene54548 | 0.807313 | 5.37E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene54548 | 0.829552 | 4.83E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene54548 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene54548 | 0.839529 | 1.50E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene54548 | 0.832721 | 8.04E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene54548 | 0.839805 | 1.27E-57 | -1.69E-46 |
| MS.gene050224 | MS.gene54548 | 0.806494 | 8.00E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene54548 | 0.827812 | 1.27E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene54548 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene54548 | 0.817058 | 4.01E-52 | -1.69E-46 |
| MS.gene050657 | MS.gene54548 | 0.814056 | 1.87E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene54548 | 0.821683 | 3.54E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene54548 | 0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene54548 | 0.822911 | 1.84E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene54548 | 0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene54548 | 0.805252 | 1.46E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene54548 | 0.822912 | 1.84E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene54548 | 0.807452 | 5.02E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene54548 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene54548 | 0.844325 | 8.11E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene54548 | 0.837943 | 3.86E-57 | -1.69E-46 |
| MS.gene051832 | MS.gene54548 | 0.804507 | 2.09E-49 | -1.69E-46 |
| MS.gene051848 | MS.gene54548 | -0.806092 | 9.73E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene54548 | 0.841267 | 5.27E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene54548 | 0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene54548 | 0.846179 | 2.55E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene54548 | 0.836413 | 9.50E-57 | -1.69E-46 |
| MS.gene052335 | MS.gene54548 | 0.806302 | 8.79E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene54548 | 0.8519 | 6.57E-61 | -1.69E-46 |
| MS.gene052516 | MS.gene54548 | 0.826302 | 2.92E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene54548 | 0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene54548 | 0.831071 | 2.05E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene54548 | 0.818092 | 2.35E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene54548 | 0.827167 | 1.82E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene54548 | 0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene54548 | 0.806375 | 8.48E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene54548 | 0.81362 | 2.33E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene54548 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene54548 | 0.815221 | 1.03E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene54548 | 0.819681 | 1.02E-52 | -1.69E-46 |
| MS.gene054554 | MS.gene54548 | 0.804586 | 2.01E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene54548 | 0.849334 | 3.46E-60 | -1.69E-46 |
| MS.gene054584 | MS.gene54548 | 0.802098 | 6.59E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene54548 | 0.812557 | 3.99E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene54548 | 0.816543 | 5.24E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene54548 | 0.835039 | 2.12E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene54548 | 0.840049 | 1.10E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene54548 | 0.813131 | 2.99E-51 | -1.69E-46 |
| MS.gene05539 | MS.gene54548 | 0.800234 | 1.59E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene54548 | 0.806159 | 9.42E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene54548 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene54548 | 0.815908 | 7.26E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene54548 | 0.816765 | 4.67E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene54548 | 0.849849 | 2.48E-60 | -1.69E-46 |
| MS.gene05552 | MS.gene54548 | 0.808752 | 2.65E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene54548 | 0.814227 | 1.72E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene54548 | 0.809422 | 1.91E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene54548 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene54548 | 0.818936 | 1.51E-52 | -1.69E-46 |
| MS.gene056390 | MS.gene54548 | 0.803333 | 3.67E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene54548 | 0.800675 | 1.29E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene54548 | 0.842635 | 2.29E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene54548 | 0.842971 | 1.87E-58 | -1.69E-46 |
| MS.gene05686 | MS.gene54548 | 0.819641 | 1.04E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene54548 | 0.813693 | 2.25E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene54548 | 0.810084 | 1.37E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene54548 | 0.837034 | 6.59E-57 | -1.69E-46 |
| MS.gene057890 | MS.gene54548 | -0.827968 | 1.17E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene54548 | 0.808413 | 3.13E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene54548 | 0.810019 | 1.42E-50 | -1.69E-46 |
| MS.gene058330 | MS.gene54548 | 0.801451 | 8.95E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene54548 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene54548 | 0.811159 | 8.05E-51 | -1.69E-46 |
| MS.gene058668 | MS.gene54548 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene54548 | 0.803168 | 3.96E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene54548 | 0.968088 | 3.50E-128 | -1.69E-46 |
| MS.gene05952 | MS.gene54548 | 0.808009 | 3.82E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene54548 | 0.835727 | 1.42E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene54548 | -0.810465 | 1.14E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene54548 | 0.824451 | 8.01E-54 | -1.69E-46 |
| MS.gene060259 | MS.gene54548 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene54548 | 0.807345 | 5.29E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene54548 | 0.819055 | 1.42E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene54548 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene54548 | 0.833014 | 6.80E-56 | -1.69E-46 |
| MS.gene060777 | MS.gene54548 | 0.807104 | 5.95E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene54548 | 0.82975 | 4.32E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene54548 | 0.850187 | 2.00E-60 | -1.69E-46 |
| MS.gene060933 | MS.gene54548 | 0.807627 | 4.61E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene54548 | 0.807359 | 5.25E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene54548 | 0.820994 | 5.11E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene54548 | 0.816374 | 5.72E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene54548 | 0.871086 | 8.93E-67 | -1.69E-46 |
| MS.gene061160 | MS.gene54548 | 0.811155 | 8.07E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene54548 | 0.811665 | 6.25E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54548.t1 | MTR_1g007800 | 97.358 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 0.0 | 536 |
| MS.gene54548.t1 | MTR_4g058840 | 32.540 | 252 | 168 | 2 | 6 | 256 | 14 | 264 | 4.27e-36 | 129 |
| MS.gene54548.t1 | MTR_4g058820 | 32.540 | 252 | 168 | 2 | 6 | 256 | 14 | 264 | 4.27e-36 | 129 |
| MS.gene54548.t1 | MTR_4g058810 | 32.143 | 252 | 169 | 2 | 6 | 256 | 14 | 264 | 4.91e-36 | 129 |
| MS.gene54548.t1 | MTR_1g051165 | 30.556 | 252 | 168 | 3 | 6 | 251 | 17 | 267 | 7.29e-32 | 119 |
| MS.gene54548.t1 | MTR_4g058830 | 35.294 | 170 | 110 | 0 | 87 | 256 | 41 | 210 | 5.50e-29 | 109 |
| MS.gene54548.t1 | MTR_8g442750 | 27.820 | 266 | 170 | 9 | 6 | 260 | 17 | 271 | 1.13e-13 | 69.7 |
| MS.gene54548.t1 | MTR_4g052350 | 26.538 | 260 | 165 | 8 | 6 | 256 | 17 | 259 | 3.54e-13 | 68.2 |
| MS.gene54548.t1 | MTR_6g035395 | 29.050 | 179 | 119 | 4 | 84 | 258 | 68 | 242 | 1.10e-12 | 66.2 |
| MS.gene54548.t1 | MTR_4g052340 | 25.373 | 268 | 174 | 8 | 6 | 264 | 17 | 267 | 1.17e-12 | 66.6 |
| MS.gene54548.t1 | MTR_4g052300 | 25.769 | 260 | 167 | 8 | 6 | 256 | 11 | 253 | 4.74e-11 | 62.0 |
| MS.gene54548.t1 | MTR_7g105460 | 22.932 | 266 | 186 | 7 | 6 | 264 | 16 | 269 | 5.89e-11 | 61.6 |
| MS.gene54548.t1 | MTR_4g132850 | 27.386 | 241 | 157 | 7 | 18 | 252 | 18 | 246 | 5.89e-11 | 61.6 |
| MS.gene54548.t1 | MTR_7g094520 | 24.706 | 255 | 167 | 7 | 9 | 252 | 17 | 257 | 6.47e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54548.t1 | AT3G01980 | 59.774 | 266 | 106 | 1 | 1 | 265 | 1 | 266 | 4.04e-119 | 341 |
| MS.gene54548.t1 | AT3G01980 | 59.774 | 266 | 106 | 1 | 1 | 265 | 1 | 266 | 4.04e-119 | 341 |
| MS.gene54548.t1 | AT3G01980 | 53.716 | 296 | 106 | 2 | 1 | 265 | 1 | 296 | 6.74e-112 | 324 |
| MS.gene54548.t1 | AT3G01980 | 58.650 | 237 | 97 | 1 | 30 | 265 | 6 | 242 | 1.18e-101 | 296 |
| MS.gene54548.t1 | AT3G01980 | 54.598 | 174 | 78 | 1 | 1 | 173 | 1 | 174 | 5.17e-66 | 203 |
| MS.gene54548.t1 | AT3G01980 | 46.569 | 204 | 78 | 2 | 1 | 173 | 1 | 204 | 5.29e-59 | 187 |
| MS.gene54548.t1 | AT2G17845 | 33.594 | 256 | 163 | 6 | 6 | 256 | 50 | 303 | 6.94e-38 | 135 |
| MS.gene54548.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 22 | 273 | 8.87e-38 | 134 |
| MS.gene54548.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 18 | 269 | 9.07e-38 | 134 |
| MS.gene54548.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 20 | 271 | 1.05e-37 | 134 |
| MS.gene54548.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 25 | 276 | 1.18e-37 | 134 |
| MS.gene54548.t1 | AT3G55290 | 33.992 | 253 | 163 | 4 | 6 | 256 | 20 | 270 | 1.24e-37 | 134 |
| MS.gene54548.t1 | AT3G55290 | 33.992 | 253 | 163 | 4 | 6 | 256 | 21 | 271 | 1.25e-37 | 134 |
| MS.gene54548.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 18 | 269 | 1.04e-36 | 131 |
| MS.gene54548.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 16 | 267 | 1.10e-36 | 131 |
| MS.gene54548.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 17 | 268 | 1.18e-36 | 131 |
| MS.gene54548.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 22 | 273 | 1.45e-36 | 131 |
| MS.gene54548.t1 | AT3G55310 | 32.016 | 253 | 168 | 4 | 6 | 256 | 20 | 270 | 1.85e-34 | 125 |
| MS.gene54548.t1 | AT3G46170 | 30.830 | 253 | 171 | 4 | 6 | 256 | 29 | 279 | 2.40e-33 | 123 |
| MS.gene54548.t1 | AT2G29150 | 29.480 | 173 | 116 | 4 | 84 | 256 | 95 | 261 | 1.89e-13 | 68.9 |
| MS.gene54548.t1 | AT2G47140 | 25.954 | 262 | 173 | 7 | 6 | 259 | 9 | 257 | 6.07e-12 | 64.3 |
Find 63 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAAGCTTGTAAAATTT+TGG | 0.076813 | 1.3:-11902747 | MS.gene54548:CDS |
| CGTATTTATAACGTCGATAA+TGG | 0.183464 | 1.3:-11901326 | MS.gene54548:CDS |
| CTTTCCCTTCCCACCGATAA+TGG | 0.206019 | 1.3:+11899345 | None:intergenic |
| GGAAGTGGTTGAATTGGATA+TGG | 0.334118 | 1.3:-11902804 | MS.gene54548:CDS |
| TTCACACCTGCATCCTTGTT+TGG | 0.341452 | 1.3:+11902986 | None:intergenic |
| AAGGGAAAGGGCAGAGAAGT+TGG | 0.349755 | 1.3:-11899331 | MS.gene54548:CDS |
| CTGTGCTCCATCAACATATA+TGG | 0.350340 | 1.3:+11899203 | None:intergenic |
| CTGGAGTTCAGCAGTTAGTT+CGG | 0.353967 | 1.3:-11901252 | MS.gene54548:CDS |
| CTGTTAACTCAAGATGATCT+TGG | 0.368618 | 1.3:+11901452 | None:intergenic |
| GTATTTATAACGTCGATAAT+GGG | 0.370711 | 1.3:-11901325 | MS.gene54548:CDS |
| AGAAATATCGTCGCCATTAG+AGG | 0.371340 | 1.3:+11903031 | None:intergenic |
| TGTTGAAGTTCCGCATCCTT+TGG | 0.387285 | 1.3:+11901362 | None:intergenic |
| TTTCCCTTCCCACCGATAAT+GGG | 0.391273 | 1.3:+11899346 | None:intergenic |
| TGTTGTGGAAGTGGTTGAAT+TGG | 0.391516 | 1.3:-11902810 | MS.gene54548:CDS |
| GCATATGCCTCAGCCTTGGC+TGG | 0.394449 | 1.3:-11901271 | MS.gene54548:CDS |
| TGCTGCATATGCCTCAGCCT+TGG | 0.396535 | 1.3:-11901275 | MS.gene54548:CDS |
| GTGAGTAATACTCTCTTTGT+TGG | 0.410502 | 1.3:+11903053 | None:intergenic |
| GTTAATTGTTATTCTTATGA+AGG | 0.411867 | 1.3:-11902707 | MS.gene54548:intron |
| AGAGTATTACTCACCTCTAA+TGG | 0.413408 | 1.3:-11903044 | MS.gene54548:CDS |
| GAGGCATATGCAGCAGCTCC+TGG | 0.414436 | 1.3:+11901283 | None:intergenic |
| TGGAGTTCAGCAGTTAGTTC+GGG | 0.420239 | 1.3:-11901251 | MS.gene54548:intron |
| CAGGCATCGGCTATGGAGAT+AGG | 0.432742 | 1.3:-11899426 | MS.gene54548:CDS |
| ATAATGGGAATTCATCTTCC+AGG | 0.433329 | 1.3:+11899361 | None:intergenic |
| TACTGATTCTGTTGTGGAAG+TGG | 0.440619 | 1.3:-11902819 | MS.gene54548:CDS |
| GGAAGATGAATTCCCATTAT+CGG | 0.455189 | 1.3:-11899358 | MS.gene54548:CDS |
| GGCAGAGAAGTTGGTGAAAG+AGG | 0.458842 | 1.3:-11899322 | MS.gene54548:CDS |
| CAATAGCATTAACTCTGATC+TGG | 0.461612 | 1.3:+11899397 | None:intergenic |
| CACATAAAGGAACGCATCCT+AGG | 0.467073 | 1.3:+11899168 | None:intergenic |
| TCAGAAAGAGGGCTTTATCC+AGG | 0.475145 | 1.3:-11901301 | MS.gene54548:CDS |
| GTGGAAGAACAATCACATAA+AGG | 0.476583 | 1.3:+11899155 | None:intergenic |
| GGAACAACCATATATGTTGA+TGG | 0.493494 | 1.3:-11899210 | MS.gene54548:CDS |
| GTCATCTATCTAATCAGTGA+TGG | 0.511788 | 1.3:-11899249 | MS.gene54548:CDS |
| ATTATCGGTGGGAAGGGAAA+GGG | 0.515455 | 1.3:-11899343 | MS.gene54548:CDS |
| CATTATCGGTGGGAAGGGAA+AGG | 0.521918 | 1.3:-11899344 | MS.gene54548:CDS |
| TCGATAATGGGTTCAGAAAG+AGG | 0.524746 | 1.3:-11901313 | MS.gene54548:CDS |
| ATTTAGCCAAACAAGGATGC+AGG | 0.531939 | 1.3:-11902992 | MS.gene54548:intron |
| AGGCTGTTGGCCAAAGGATG+CGG | 0.532056 | 1.3:-11901372 | MS.gene54548:CDS |
| TTCAGTTACTGATTCTGTTG+TGG | 0.546092 | 1.3:-11902825 | MS.gene54548:CDS |
| AAAGGAACGCATCCTAGGCC+TGG | 0.552291 | 1.3:+11899173 | None:intergenic |
| CTGAACTCCAGCCAAGGCTG+AGG | 0.556384 | 1.3:+11901264 | None:intergenic |
| TATTAAAGGCTGTTGGCCAA+AGG | 0.558624 | 1.3:-11901378 | MS.gene54548:CDS |
| GATGGGTCATGCTACATGAC+AGG | 0.564383 | 1.3:-11899231 | MS.gene54548:CDS |
| AATTCCCATTATCGGTGGGA+AGG | 0.575283 | 1.3:-11899350 | MS.gene54548:CDS |
| ATTCCCATTATCGGTGGGAA+GGG | 0.578456 | 1.3:-11899349 | MS.gene54548:CDS |
| AGAGTTAATGCTATTGCAAG+AGG | 0.584311 | 1.3:-11899390 | MS.gene54548:CDS |
| AGGCAGCACCACTTGAGAGA+TGG | 0.586030 | 1.3:-11899302 | MS.gene54548:CDS |
| CACAGTCTATAACCAGGCCT+AGG | 0.587077 | 1.3:-11899185 | MS.gene54548:CDS |
| CGATAATGGGTTCAGAAAGA+GGG | 0.588137 | 1.3:-11901312 | MS.gene54548:CDS |
| GGAATTCATCTTCCAGGTGA+AGG | 0.588874 | 1.3:+11899367 | None:intergenic |
| TCATCTATCTAATCAGTGAT+GGG | 0.590549 | 1.3:-11899248 | MS.gene54548:CDS |
| TATTGCAAGAGGCCTTCACC+TGG | 0.592366 | 1.3:-11899379 | MS.gene54548:CDS |
| TGCGGAACTTCAACAAGGGT+GGG | 0.594166 | 1.3:-11901354 | MS.gene54548:CDS |
| ACATCAAGCCATCTCTCAAG+TGG | 0.599720 | 1.3:+11899294 | None:intergenic |
| GCTTTCAATTTAGCCAAACA+AGG | 0.601130 | 1.3:-11902999 | MS.gene54548:CDS |
| ATGCGGAACTTCAACAAGGG+TGG | 0.606430 | 1.3:-11901355 | MS.gene54548:CDS |
| AGATGAATTCCCATTATCGG+TGG | 0.607123 | 1.3:-11899355 | MS.gene54548:CDS |
| AATGGCGACGATATTTCTCA+TGG | 0.613815 | 1.3:-11903026 | MS.gene54548:CDS |
| TATCGACGTTATAAATACGA+TGG | 0.625720 | 1.3:+11901330 | None:intergenic |
| AGGATGCGGAACTTCAACAA+GGG | 0.642788 | 1.3:-11901358 | MS.gene54548:CDS |
| GATGAATTCCCATTATCGGT+GGG | 0.643626 | 1.3:-11899354 | MS.gene54548:CDS |
| AAGGATGCGGAACTTCAACA+AGG | 0.644362 | 1.3:-11901359 | MS.gene54548:CDS |
| ATGGAGCACAGTCTATAACC+AGG | 0.654617 | 1.3:-11899191 | MS.gene54548:CDS |
| TAACTGCTGAACTCCAGCCA+AGG | 0.675105 | 1.3:+11901258 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAATCAAATAAAATAA+TGG | + | chr1.3:11899559-11899578 | None:intergenic | 10.0% |
| !! | TGAAATAATAAATCTTTAAA+AGG | - | chr1.3:11901825-11901844 | MS.gene54548:intron | 10.0% |
| !! | TTAAAATAATAATTATGAGA+AGG | - | chr1.3:11901709-11901728 | MS.gene54548:intron | 10.0% |
| !!! | AAATTTTTTGTGTATTTTTA+GGG | - | chr1.3:11899326-11899345 | MS.gene54548:CDS | 10.0% |
| !!! | GAAATAATAAATCTTTAAAA+GGG | - | chr1.3:11901826-11901845 | MS.gene54548:intron | 10.0% |
| !!! | TAAATTTTTTGTGTATTTTT+AGG | - | chr1.3:11899325-11899344 | MS.gene54548:CDS | 10.0% |
| !!! | TCTCATAATTATTATTTTAA+CGG | + | chr1.3:11901709-11901728 | None:intergenic | 10.0% |
| !! | AAATCGAAAAAAAAAAATGA+AGG | + | chr1.3:11899288-11899307 | None:intergenic | 15.0% |
| !! | TAGCTTAATTAAGTATAAAT+TGG | - | chr1.3:11902637-11902656 | MS.gene54548:intron | 15.0% |
| !!! | AATAGTGAAGATAAATTTTA+TGG | - | chr1.3:11900816-11900835 | MS.gene54548:intron | 15.0% |
| !! | AATTAAGCTGTTTATTCAAA+TGG | - | chr1.3:11900030-11900049 | MS.gene54548:intron | 20.0% |
| !! | AATTTCTTACTAATGAGATA+GGG | - | chr1.3:11902293-11902312 | MS.gene54548:intron | 20.0% |
| !! | ATATTTATCACAAACTTGAT+AGG | + | chr1.3:11900144-11900163 | None:intergenic | 20.0% |
| !! | ATTAAGCTGTTTATTCAAAT+GGG | - | chr1.3:11900031-11900050 | MS.gene54548:intron | 20.0% |
| !! | CAAATTAATCTATTCAAACA+GGG | - | chr1.3:11899731-11899750 | MS.gene54548:intron | 20.0% |
| !! | GAAAAAGCTTATAGTTTATA+GGG | - | chr1.3:11899624-11899643 | MS.gene54548:intron | 20.0% |
| !! | TAATTTCTTACTAATGAGAT+AGG | - | chr1.3:11902292-11902311 | MS.gene54548:intron | 20.0% |
| !! | TCAGTAATAAGTTAAGTTAT+AGG | - | chr1.3:11899583-11899602 | MS.gene54548:intron | 20.0% |
| !! | TGAAAAAGCTTATAGTTTAT+AGG | - | chr1.3:11899623-11899642 | MS.gene54548:intron | 20.0% |
| !! | TTTATCTTGTGTAATAGAAA+TGG | - | chr1.3:11899960-11899979 | MS.gene54548:intron | 20.0% |
| !!! | AACTTTTATAGCAGATAATA+AGG | + | chr1.3:11902761-11902780 | None:intergenic | 20.0% |
| !!! | ATAAAGCTTGTAAAATTTTG+GGG | - | chr1.3:11899484-11899503 | MS.gene54548:intron | 20.0% |
| !!! | CTTATTTAGAGTTTCTTTTT+TGG | + | chr1.3:11901146-11901165 | None:intergenic | 20.0% |
| !!! | GATAAAGCTTGTAAAATTTT+GGG | - | chr1.3:11899483-11899502 | MS.gene54548:intron | 20.0% |
| !!! | GGCATGATATAATTTTTTAT+GGG | - | chr1.3:11902467-11902486 | MS.gene54548:intron | 20.0% |
| !!! | GTTAATTGTTATTCTTATGA+AGG | - | chr1.3:11899522-11899541 | MS.gene54548:intron | 20.0% |
| !!! | TGATAAAGCTTGTAAAATTT+TGG | - | chr1.3:11899482-11899501 | MS.gene54548:intron | 20.0% |
| !!! | TGGCATGATATAATTTTTTA+TGG | - | chr1.3:11902466-11902485 | MS.gene54548:intron | 20.0% |
| !!! | TTTTACTTGCTTTTCATATT+TGG | - | chr1.3:11902682-11902701 | MS.gene54548:intron | 20.0% |
| ! | ACAAGAAAATAGTCTCTAAA+TGG | + | chr1.3:11900655-11900674 | None:intergenic | 25.0% |
| ! | ACTCCAATGATGATAATTAA+CGG | + | chr1.3:11902114-11902133 | None:intergenic | 25.0% |
| ! | ATCAAAGATTGTTTCAGTTA+GGG | + | chr1.3:11900430-11900449 | None:intergenic | 25.0% |
| ! | ATTATCTGCTATAAAAGTTG+AGG | - | chr1.3:11902762-11902781 | MS.gene54548:CDS | 25.0% |
| ! | GACTTATTCATGAGTTTATA+TGG | - | chr1.3:11899686-11899705 | MS.gene54548:intron | 25.0% |
| ! | GATTGATAAAAGTAAAGAAC+AGG | + | chr1.3:11901116-11901135 | None:intergenic | 25.0% |
| ! | GCAAATTAATCTATTCAAAC+AGG | - | chr1.3:11899730-11899749 | MS.gene54548:intron | 25.0% |
| ! | GTATTTATAACGTCGATAAT+GGG | - | chr1.3:11900904-11900923 | MS.gene54548:intron | 25.0% |
| ! | GTTTAAAAACACCTAAACTT+AGG | + | chr1.3:11899757-11899776 | None:intergenic | 25.0% |
| ! | TAATTGGGTTAAATCAATGT+GGG | + | chr1.3:11901462-11901481 | None:intergenic | 25.0% |
| ! | TCAAAATCAAGGAAGTAATA+AGG | + | chr1.3:11902215-11902234 | None:intergenic | 25.0% |
| ! | TCATTTATTTGAAAATCAGC+TGG | - | chr1.3:11901080-11901099 | MS.gene54548:intron | 25.0% |
| ! | TCCTCTATTAAAGAATTCTT+CGG | + | chr1.3:11901329-11901348 | None:intergenic | 25.0% |
| ! | TGTAACAAAGGTTTAATGTT+AGG | - | chr1.3:11902142-11902161 | MS.gene54548:intron | 25.0% |
| ! | TTAAGCTGTTTATTCAAATG+GGG | - | chr1.3:11900032-11900051 | MS.gene54548:intron | 25.0% |
| ! | TTTGGAAATATTAGAAAGTC+TGG | - | chr1.3:11902700-11902719 | MS.gene54548:intron | 25.0% |
| !! | AAGTATTGCACGAAAAATAA+CGG | - | chr1.3:11899380-11899399 | MS.gene54548:CDS | 25.0% |
| !! | AATAAATCTTTAAAAGGGAC+AGG | - | chr1.3:11901831-11901850 | MS.gene54548:intron | 25.0% |
| !! | AATACACTCTAACATGATTT+TGG | - | chr1.3:11900203-11900222 | MS.gene54548:intron | 25.0% |
| !! | AGTGAAGATAAATTTTATGG+CGG | - | chr1.3:11900819-11900838 | MS.gene54548:intron | 25.0% |
| !! | ATAAGAAGATTTTCATGACT+TGG | - | chr1.3:11901161-11901180 | MS.gene54548:intron | 25.0% |
| !! | ATTTTGTATAGTAACTGAGA+TGG | + | chr1.3:11901907-11901926 | None:intergenic | 25.0% |
| !! | GTATTGAAAGTGATTTTGAA+GGG | + | chr1.3:11900188-11900207 | None:intergenic | 25.0% |
| !! | TGTATTGAAAGTGATTTTGA+AGG | + | chr1.3:11900189-11900208 | None:intergenic | 25.0% |
| !! | TTAGAAGCAGATATACTTTT+AGG | - | chr1.3:11901612-11901631 | MS.gene54548:intron | 25.0% |
| !! | TTGTCATTTGGATTATATCT+TGG | - | chr1.3:11901558-11901577 | MS.gene54548:intron | 25.0% |
| !!! | CAAAAGAAAAAGGTACTATT+TGG | - | chr1.3:11902369-11902388 | MS.gene54548:intron | 25.0% |
| !!! | GTAAATTCTTTTGACTTTCA+TGG | - | chr1.3:11901237-11901256 | MS.gene54548:intron | 25.0% |
| !!! | TGATTTTGGCAAAAATTTAG+AGG | - | chr1.3:11900217-11900236 | MS.gene54548:intron | 25.0% |
| !!! | TGTGATAAATATGACTTGTT+TGG | - | chr1.3:11900152-11900171 | MS.gene54548:intron | 25.0% |
| !!! | TTGTAAAATTTTGGGGAAAT+TGG | - | chr1.3:11899491-11899510 | MS.gene54548:intron | 25.0% |
| !!! | TTTTTTGTGTATTTTTAGGG+TGG | - | chr1.3:11899329-11899348 | MS.gene54548:CDS | 25.0% |
| AATGTTATCTGCAGAACAAA+AGG | + | chr1.3:11901043-11901062 | None:intergenic | 30.0% | |
| ACTACTTGAATCTAAGCATT+TGG | + | chr1.3:11900358-11900377 | None:intergenic | 30.0% | |
| AGAAGTTTGAACAGATAGTT+AGG | + | chr1.3:11902536-11902555 | None:intergenic | 30.0% | |
| AGCTGACAAATGAATTTCTA+TGG | - | chr1.3:11902429-11902448 | MS.gene54548:intron | 30.0% | |
| ATAGATTCACACAAACAAAG+TGG | + | chr1.3:11900713-11900732 | None:intergenic | 30.0% | |
| ATGCAAGATTGAGTAGTTTA+AGG | - | chr1.3:11899783-11899802 | MS.gene54548:intron | 30.0% | |
| CAGTTAGGTGATTAAATGAT+TGG | + | chr1.3:11902018-11902037 | None:intergenic | 30.0% | |
| CCTCTATTAAAGAATTCTTC+GGG | + | chr1.3:11901328-11901347 | None:intergenic | 30.0% | |
| CGTATTTATAACGTCGATAA+TGG | - | chr1.3:11900903-11900922 | MS.gene54548:intron | 30.0% | |
| CTAAAAAACTTCATCACACA+AGG | + | chr1.3:11901209-11901228 | None:intergenic | 30.0% | |
| CTAATTGGGTTAAATCAATG+TGG | + | chr1.3:11901463-11901482 | None:intergenic | 30.0% | |
| GATCAAAGATTGTTTCAGTT+AGG | + | chr1.3:11900431-11900450 | None:intergenic | 30.0% | |
| GATTGTTCATAACTCATAAG+TGG | - | chr1.3:11899858-11899877 | MS.gene54548:intron | 30.0% | |
| GTGAAGTTTAAAGACAAAAG+TGG | - | chr1.3:11900098-11900117 | MS.gene54548:intron | 30.0% | |
| TAAGTTAGGGTAGAGATTAA+TGG | + | chr1.3:11901972-11901991 | None:intergenic | 30.0% | |
| TAGATTCACACAAACAAAGT+GGG | + | chr1.3:11900712-11900731 | None:intergenic | 30.0% | |
| TATCGACGTTATAAATACGA+TGG | + | chr1.3:11900902-11900921 | None:intergenic | 30.0% | |
| TCAATTTCCTATTACAGTAG+AGG | + | chr1.3:11902246-11902265 | None:intergenic | 30.0% | |
| TCATCTATCTAATCAGTGAT+GGG | - | chr1.3:11902981-11903000 | MS.gene54548:intron | 30.0% | |
| TCATTTGGATTATATCTTGG+TGG | - | chr1.3:11901561-11901580 | MS.gene54548:intron | 30.0% | |
| TCTACTGTAATAGGAAATTG+AGG | - | chr1.3:11902245-11902264 | MS.gene54548:intron | 30.0% | |
| TGAGATGATTATGTCAAACT+GGG | - | chr1.3:11902397-11902416 | MS.gene54548:intron | 30.0% | |
| TGCAAGATTGAGTAGTTTAA+GGG | - | chr1.3:11899784-11899803 | MS.gene54548:intron | 30.0% | |
| TGGTTGTAAATAACAGTAGT+TGG | + | chr1.3:11901998-11902017 | None:intergenic | 30.0% | |
| TGTCCGTTAATTATCATCAT+TGG | - | chr1.3:11902108-11902127 | MS.gene54548:intron | 30.0% | |
| TTGAGATGATTATGTCAAAC+TGG | - | chr1.3:11902396-11902415 | MS.gene54548:intron | 30.0% | |
| TTTCGCTAAGCAAAAGAAAA+AGG | - | chr1.3:11902359-11902378 | MS.gene54548:intron | 30.0% | |
| TTTGGCAAAAATTTAGAGGT+CGG | - | chr1.3:11900221-11900240 | MS.gene54548:intron | 30.0% | |
| ! | ACTTCTGTAATTTTATCCTG+CGG | - | chr1.3:11902550-11902569 | MS.gene54548:intron | 30.0% |
| ! | AGATTTTTCATACGCTATCT+TGG | + | chr1.3:11899909-11899928 | None:intergenic | 30.0% |
| ! | ATGATGATAATTAACGGACA+AGG | + | chr1.3:11902108-11902127 | None:intergenic | 30.0% |
| ! | ATTACTTCCTTGATTTTGAG+TGG | - | chr1.3:11902216-11902235 | MS.gene54548:intron | 30.0% |
| ! | TGGTTTTTATTAAAGGCTGT+TGG | - | chr1.3:11900844-11900863 | MS.gene54548:intron | 30.0% |
| !! | ACAGTAGTTGGTAATAAGTT+AGG | + | chr1.3:11901986-11902005 | None:intergenic | 30.0% |
| !! | AGTGTTGCTTGGTTAATTTA+TGG | - | chr1.3:11901489-11901508 | MS.gene54548:intron | 30.0% |
| !! | CAGTAGTTGGTAATAAGTTA+GGG | + | chr1.3:11901985-11902004 | None:intergenic | 30.0% |
| !! | GCAATTTAGTCTTTTGCATT+AGG | - | chr1.3:11900298-11900317 | MS.gene54548:intron | 30.0% |
| !! | TGAATCTGTTTTTCATGATG+CGG | - | chr1.3:11899458-11899477 | MS.gene54548:intron | 30.0% |
| !! | TTAATGGGGTATTGGTAAAA+AGG | - | chr1.3:11901763-11901782 | MS.gene54548:intron | 30.0% |
| !!! | AATTTGTTTTGTTCAGGCAT+CGG | - | chr1.3:11902790-11902809 | MS.gene54548:CDS | 30.0% |
| !!! | AGCTTTTTCATAAGCTATCT+TGG | + | chr1.3:11899613-11899632 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGGTGGTTTTGAT+GGG | - | chr1.3:11899339-11899358 | MS.gene54548:CDS | 30.0% |
| !!! | GACTATTTTCTTGTTTTCGT+TGG | - | chr1.3:11900661-11900680 | MS.gene54548:intron | 30.0% |
| !!! | GCTATCAATTTGTTTTGTTC+AGG | - | chr1.3:11902784-11902803 | MS.gene54548:CDS | 30.0% |
| !!! | TAGAGTTTCTTTTTTGGCAA+CGG | + | chr1.3:11901140-11901159 | None:intergenic | 30.0% |
| !!! | TATTTTTAGGGTGGTTTTGA+TGG | - | chr1.3:11899338-11899357 | MS.gene54548:CDS | 30.0% |
| AACGAATAGAGTTGTCAGTT+AGG | + | chr1.3:11902033-11902052 | None:intergenic | 35.0% | |
| AATCTATGAGCTGAACGAAT+TGG | - | chr1.3:11900726-11900745 | MS.gene54548:intron | 35.0% | |
| AATTATGAGAAGGATGACGA+TGG | - | chr1.3:11901719-11901738 | MS.gene54548:intron | 35.0% | |
| ACGCTATCTTGGAAAACTTA+TGG | + | chr1.3:11899898-11899917 | None:intergenic | 35.0% | |
| AGAGTTAATGCTATTGCAAG+AGG | - | chr1.3:11902839-11902858 | MS.gene54548:CDS | 35.0% | |
| AGGATTACCACTCAAAATCA+AGG | + | chr1.3:11902226-11902245 | None:intergenic | 35.0% | |
| AGTTACTGCATTGTTTGTGT+TGG | - | chr1.3:11901529-11901548 | MS.gene54548:intron | 35.0% | |
| ATAATGCCTAACATGTTGAC+AGG | + | chr1.3:11900530-11900549 | None:intergenic | 35.0% | |
| ATCTATGAGCTGAACGAATT+GGG | - | chr1.3:11900727-11900746 | MS.gene54548:intron | 35.0% | |
| ATTATGAGAAGGATGACGAT+GGG | - | chr1.3:11901720-11901739 | MS.gene54548:intron | 35.0% | |
| ATTCATCAAAACAGTCCTGA+AGG | + | chr1.3:11900578-11900597 | None:intergenic | 35.0% | |
| CAATAGCATTAACTCTGATC+TGG | + | chr1.3:11902835-11902854 | None:intergenic | 35.0% | |
| CCCGAAGAATTCTTTAATAG+AGG | - | chr1.3:11901325-11901344 | MS.gene54548:CDS | 35.0% | |
| CTAGCTAATTCTCTTCTCAA+GGG | - | chr1.3:11901866-11901885 | MS.gene54548:intron | 35.0% | |
| CTGTTAACTCAAGATGATCT+TGG | + | chr1.3:11900780-11900799 | None:intergenic | 35.0% | |
| CTTGGTTAATTTATGGCTCA+TGG | - | chr1.3:11901496-11901515 | MS.gene54548:intron | 35.0% | |
| GAAATGGAACCCACATAAAA+TGG | + | chr1.3:11901427-11901446 | None:intergenic | 35.0% | |
| GAAGAGTTCACAATAGAGAT+AGG | + | chr1.3:11901935-11901954 | None:intergenic | 35.0% | |
| GCTTTCAATTTAGCCAAACA+AGG | - | chr1.3:11899230-11899249 | MS.gene54548:CDS | 35.0% | |
| GGAACAACCATATATGTTGA+TGG | - | chr1.3:11903019-11903038 | MS.gene54548:CDS | 35.0% | |
| GGAACTTCAAGTACTAGTAT+TGG | + | chr1.3:11902515-11902534 | None:intergenic | 35.0% | |
| GGAAGATGAATTCCCATTAT+CGG | - | chr1.3:11902871-11902890 | MS.gene54548:CDS | 35.0% | |
| GGTTCAGCATATACTATACA+AGG | + | chr1.3:11900496-11900515 | None:intergenic | 35.0% | |
| GTCATCTATCTAATCAGTGA+TGG | - | chr1.3:11902980-11902999 | MS.gene54548:intron | 35.0% | |
| GTGAGTAATACTCTCTTTGT+TGG | + | chr1.3:11899179-11899198 | None:intergenic | 35.0% | |
| GTTACTGCATTGTTTGTGTT+GGG | - | chr1.3:11901530-11901549 | MS.gene54548:intron | 35.0% | |
| TAACTAATGTATGCACCTTC+AGG | - | chr1.3:11900560-11900579 | MS.gene54548:intron | 35.0% | |
| TCAACATGTTAGGCATTATG+AGG | - | chr1.3:11900531-11900550 | MS.gene54548:intron | 35.0% | |
| TGGTAATCCTCTACTGTAAT+AGG | - | chr1.3:11902236-11902255 | MS.gene54548:intron | 35.0% | |
| TGTTGGGTATACTTGTCATT+TGG | - | chr1.3:11901546-11901565 | MS.gene54548:intron | 35.0% | |
| TTCTTTGATCTGCTTGAGAA+TGG | - | chr1.3:11900685-11900704 | MS.gene54548:intron | 35.0% | |
| ! | AGAGTATTACTCACCTCTAA+TGG | - | chr1.3:11899185-11899204 | MS.gene54548:CDS | 35.0% |
| ! | AGATAAATTTTATGGCGGCA+TGG | - | chr1.3:11900824-11900843 | MS.gene54548:intron | 35.0% |
| ! | ATAATGGGAATTCATCTTCC+AGG | + | chr1.3:11902871-11902890 | None:intergenic | 35.0% |
| ! | GGATTCTATTCATCTGAAAC+AGG | - | chr1.3:11900748-11900767 | MS.gene54548:intron | 35.0% |
| ! | TATGTCCCACCATTTTATGT+GGG | - | chr1.3:11901415-11901434 | MS.gene54548:CDS | 35.0% |
| ! | TTATGTCCCACCATTTTATG+TGG | - | chr1.3:11901414-11901433 | MS.gene54548:CDS | 35.0% |
| !! | TCAAGTACTAGTATTGGCTT+CGG | + | chr1.3:11902509-11902528 | None:intergenic | 35.0% |
| !! | TTCAGTTACTGATTCTGTTG+TGG | - | chr1.3:11899404-11899423 | MS.gene54548:CDS | 35.0% |
| !!! | AGAGTTTCTTTTTTGGCAAC+GGG | + | chr1.3:11901139-11901158 | None:intergenic | 35.0% |
| AATAAACAGTGCACTCTAGG+AGG | + | chr1.3:11902066-11902085 | None:intergenic | 40.0% | |
| AATGGCGACGATATTTCTCA+TGG | - | chr1.3:11899203-11899222 | MS.gene54548:CDS | 40.0% | |
| AGAAATATCGTCGCCATTAG+AGG | + | chr1.3:11899201-11899220 | None:intergenic | 40.0% | |
| AGATGAATTCCCATTATCGG+TGG | - | chr1.3:11902874-11902893 | MS.gene54548:CDS | 40.0% | |
| AGCAACACTCACTCTCTAAT+TGG | + | chr1.3:11901478-11901497 | None:intergenic | 40.0% | |
| AGTAACTGAGATGGTTGCAA+GGG | + | chr1.3:11901898-11901917 | None:intergenic | 40.0% | |
| ATATAGTGTCCGGGGTTAAT+GGG | - | chr1.3:11901748-11901767 | MS.gene54548:intron | 40.0% | |
| ATGGAACCCACATAAAATGG+TGG | + | chr1.3:11901424-11901443 | None:intergenic | 40.0% | |
| ATTCAAATGGGGCCTAAGTT+TGG | - | chr1.3:11900043-11900062 | MS.gene54548:intron | 40.0% | |
| ATTTAGCCAAACAAGGATGC+AGG | - | chr1.3:11899237-11899256 | MS.gene54548:CDS | 40.0% | |
| CAAACACTCGCTCTCTTATT+GGG | - | chr1.3:11901381-11901400 | MS.gene54548:CDS | 40.0% | |
| CAATGAAGATCGAATCGATC+CGG | - | chr1.3:11900388-11900407 | MS.gene54548:intron | 40.0% | |
| CTATAACAGAGAAACTGCAC+AGG | + | chr1.3:11902610-11902629 | None:intergenic | 40.0% | |
| CTGTGCTCCATCAACATATA+TGG | + | chr1.3:11903029-11903048 | None:intergenic | 40.0% | |
| GAGAATAAACAGTGCACTCT+AGG | + | chr1.3:11902069-11902088 | None:intergenic | 40.0% | |
| GAGTTGCATCGTTGTAACAA+AGG | - | chr1.3:11902130-11902149 | MS.gene54548:intron | 40.0% | |
| GATGAATTCCCATTATCGGT+GGG | - | chr1.3:11902875-11902894 | MS.gene54548:CDS | 40.0% | |
| GCAACACTCACTCTCTAATT+GGG | + | chr1.3:11901477-11901496 | None:intergenic | 40.0% | |
| GCTAGCTAATTCTCTTCTCA+AGG | - | chr1.3:11901865-11901884 | MS.gene54548:intron | 40.0% | |
| GGAAGTGGTTGAATTGGATA+TGG | - | chr1.3:11899425-11899444 | MS.gene54548:CDS | 40.0% | |
| GGGTTCCATTTCCAAAATGT+AGG | - | chr1.3:11901435-11901454 | MS.gene54548:CDS | 40.0% | |
| TAGTAACTGAGATGGTTGCA+AGG | + | chr1.3:11901899-11901918 | None:intergenic | 40.0% | |
| TATTAAAGGCTGTTGGCCAA+AGG | - | chr1.3:11900851-11900870 | MS.gene54548:intron | 40.0% | |
| TCAAACACTCGCTCTCTTAT+TGG | - | chr1.3:11901380-11901399 | MS.gene54548:CDS | 40.0% | |
| TCAAGGAAGTAATAAGGTGC+AGG | + | chr1.3:11902209-11902228 | None:intergenic | 40.0% | |
| TGGAACCCACATAAAATGGT+GGG | + | chr1.3:11901423-11901442 | None:intergenic | 40.0% | |
| TGTTGTGGAAGTGGTTGAAT+TGG | - | chr1.3:11899419-11899438 | MS.gene54548:CDS | 40.0% | |
| TTCAAACAGGGCCTAAGTTT+AGG | - | chr1.3:11899743-11899762 | MS.gene54548:intron | 40.0% | |
| ! | AAGACAAAAGTGGTTCTGCT+TGG | - | chr1.3:11900108-11900127 | MS.gene54548:intron | 40.0% |
| ! | AGACAAAAGTGGTTCTGCTT+GGG | - | chr1.3:11900109-11900128 | MS.gene54548:intron | 40.0% |
| ! | ATATTGACTAATCCAACCGC+AGG | + | chr1.3:11902569-11902588 | None:intergenic | 40.0% |
| ! | ATTAGAGAGTGAGTGTTGCT+TGG | - | chr1.3:11901478-11901497 | MS.gene54548:intron | 40.0% |
| ! | CTGTAATTTTATCCTGCGGT+TGG | - | chr1.3:11902554-11902573 | MS.gene54548:intron | 40.0% |
| ! | GATAATTAACGGACAAGGTG+CGG | + | chr1.3:11902103-11902122 | None:intergenic | 40.0% |
| ! | GGCGGCATGGTTTTTATTAA+AGG | - | chr1.3:11900837-11900856 | MS.gene54548:intron | 40.0% |
| ! | TCAATGTGGGTCCTACATTT+TGG | + | chr1.3:11901449-11901468 | None:intergenic | 40.0% |
| !! | ACTAGTATTGGCTTCGGAAT+AGG | + | chr1.3:11902503-11902522 | None:intergenic | 40.0% |
| !! | CGATAATGGGTTCAGAAAGA+GGG | - | chr1.3:11900917-11900936 | MS.gene54548:intron | 40.0% |
| !! | TACTGATTCTGTTGTGGAAG+TGG | - | chr1.3:11899410-11899429 | MS.gene54548:CDS | 40.0% |
| !! | TCGATAATGGGTTCAGAAAG+AGG | - | chr1.3:11900916-11900935 | MS.gene54548:intron | 40.0% |
| !! | TGGGTCCTACATTTTGGAAA+TGG | + | chr1.3:11901443-11901462 | None:intergenic | 40.0% |
| !! | TTTTAGGAGTTGTCTCTGCA+TGG | - | chr1.3:11901628-11901647 | MS.gene54548:intron | 40.0% |
| !!! | GAGTTTCTTTTTTGGCAACG+GGG | + | chr1.3:11901138-11901157 | None:intergenic | 40.0% |
| AAGGATGCGGAACTTCAACA+AGG | - | chr1.3:11900870-11900889 | MS.gene54548:intron | 45.0% | |
| AATTCCCATTATCGGTGGGA+AGG | - | chr1.3:11902879-11902898 | MS.gene54548:CDS | 45.0% | |
| ACATCAAGCCATCTCTCAAG+TGG | + | chr1.3:11902938-11902957 | None:intergenic | 45.0% | |
| AGGATGCGGAACTTCAACAA+GGG | - | chr1.3:11900871-11900890 | MS.gene54548:intron | 45.0% | |
| ATGGAGCACAGTCTATAACC+AGG | - | chr1.3:11903038-11903057 | MS.gene54548:CDS | 45.0% | |
| ATTATCGGTGGGAAGGGAAA+GGG | - | chr1.3:11902886-11902905 | MS.gene54548:intron | 45.0% | |
| ATTCCCATTATCGGTGGGAA+GGG | - | chr1.3:11902880-11902899 | MS.gene54548:CDS | 45.0% | |
| CACATAAAGGAACGCATCCT+AGG | + | chr1.3:11903064-11903083 | None:intergenic | 45.0% | |
| CCAAGTCCTGTCAACATGTT+AGG | - | chr1.3:11900521-11900540 | MS.gene54548:intron | 45.0% | |
| CCTAACATGTTGACAGGACT+TGG | + | chr1.3:11900524-11900543 | None:intergenic | 45.0% | |
| CTATGGCTGTGATATCGATG+TGG | - | chr1.3:11902446-11902465 | MS.gene54548:intron | 45.0% | |
| CTGGAGTTCAGCAGTTAGTT+CGG | - | chr1.3:11900977-11900996 | MS.gene54548:intron | 45.0% | |
| GAGTAGTTTAAGGGTCTGCT+TGG | - | chr1.3:11899793-11899812 | MS.gene54548:intron | 45.0% | |
| GATATAGTGTCCGGGGTTAA+TGG | - | chr1.3:11901747-11901766 | MS.gene54548:intron | 45.0% | |
| GGAATTCATCTTCCAGGTGA+AGG | + | chr1.3:11902865-11902884 | None:intergenic | 45.0% | |
| TAAGAGAGCGAGTGTTTGAG+AGG | + | chr1.3:11901379-11901398 | None:intergenic | 45.0% | |
| TACCAATACCCCATTAACCC+CGG | + | chr1.3:11901760-11901779 | None:intergenic | 45.0% | |
| TATAGTGTCCGGGGTTAATG+GGG | - | chr1.3:11901749-11901768 | MS.gene54548:intron | 45.0% | |
| TCACTGTCACCACCAAACTT+AGG | + | chr1.3:11900058-11900077 | None:intergenic | 45.0% | |
| TGGAGTTCAGCAGTTAGTTC+GGG | - | chr1.3:11900978-11900997 | MS.gene54548:intron | 45.0% | |
| TGTTGAAGTTCCGCATCCTT+TGG | + | chr1.3:11900870-11900889 | None:intergenic | 45.0% | |
| TGTTGACAGGACTTGGCATT+TGG | + | chr1.3:11900517-11900536 | None:intergenic | 45.0% | |
| TTCACACCTGCATCCTTGTT+TGG | + | chr1.3:11899246-11899265 | None:intergenic | 45.0% | |
| TTTCCCTTCCCACCGATAAT+GGG | + | chr1.3:11902886-11902905 | None:intergenic | 45.0% | |
| ! | TCAGAAAGAGGGCTTTATCC+AGG | - | chr1.3:11900928-11900947 | MS.gene54548:intron | 45.0% |
| !! | ATGGGCACTGATATAGTGTC+CGG | - | chr1.3:11901738-11901757 | MS.gene54548:intron | 45.0% |
| !!! | TTTTGTTCAGGCATCGGCTA+TGG | - | chr1.3:11902796-11902815 | MS.gene54548:CDS | 45.0% |
| AAGGGAAAGGGCAGAGAAGT+TGG | - | chr1.3:11902898-11902917 | MS.gene54548:intron | 50.0% | |
| AAGGTGCAGGAAAGCCACTT+CGG | + | chr1.3:11902196-11902215 | None:intergenic | 50.0% | |
| AGTGACTCTATCCTCCGAAG+TGG | - | chr1.3:11902179-11902198 | MS.gene54548:intron | 50.0% | |
| ATGCGGAACTTCAACAAGGG+TGG | - | chr1.3:11900874-11900893 | MS.gene54548:intron | 50.0% | |
| CAAATGGGGCCTAAGTTTGG+TGG | - | chr1.3:11900046-11900065 | MS.gene54548:intron | 50.0% | |
| CACAGTCTATAACCAGGCCT+AGG | - | chr1.3:11903044-11903063 | MS.gene54548:CDS | 50.0% | |
| CAGAGAAACTGCACAGGACA+TGG | + | chr1.3:11902604-11902623 | None:intergenic | 50.0% | |
| CATTATCGGTGGGAAGGGAA+AGG | - | chr1.3:11902885-11902904 | MS.gene54548:CDS | 50.0% | |
| CTTTCCCTTCCCACCGATAA+TGG | + | chr1.3:11902887-11902906 | None:intergenic | 50.0% | |
| GATGGGTCATGCTACATGAC+AGG | - | chr1.3:11902998-11903017 | MS.gene54548:CDS | 50.0% | |
| GGGTTCCAACTCAGATACTC+CGG | + | chr1.3:11900410-11900429 | None:intergenic | 50.0% | |
| TAACTGCTGAACTCCAGCCA+AGG | + | chr1.3:11900974-11900993 | None:intergenic | 50.0% | |
| TATTGCAAGAGGCCTTCACC+TGG | - | chr1.3:11902850-11902869 | MS.gene54548:CDS | 50.0% | |
| TGCGGAACTTCAACAAGGGT+GGG | - | chr1.3:11900875-11900894 | MS.gene54548:intron | 50.0% | |
| ! | AAACAGTGCACTCTAGGAGG+AGG | + | chr1.3:11902063-11902082 | None:intergenic | 50.0% |
| ! | TCGATCCGGAGTATCTGAGT+TGG | - | chr1.3:11900402-11900421 | MS.gene54548:intron | 50.0% |
| !! | GGCAGAGAAGTTGGTGAAAG+AGG | - | chr1.3:11902907-11902926 | MS.gene54548:intron | 50.0% |
| !! | TGGGCACTGATATAGTGTCC+GGG | - | chr1.3:11901739-11901758 | MS.gene54548:intron | 50.0% |
| !!! | TAGGGTGGTTTTGATGGGAG+AGG | - | chr1.3:11899344-11899363 | MS.gene54548:CDS | 50.0% |
| AAAGGAACGCATCCTAGGCC+TGG | + | chr1.3:11903059-11903078 | None:intergenic | 55.0% | |
| AGGCAGCACCACTTGAGAGA+TGG | - | chr1.3:11902927-11902946 | MS.gene54548:intron | 55.0% | |
| AGGCTGTTGGCCAAAGGATG+CGG | - | chr1.3:11900857-11900876 | MS.gene54548:intron | 55.0% | |
| GTCCGGGGTTAATGGGGTAT+TGG | - | chr1.3:11901755-11901774 | MS.gene54548:intron | 55.0% | |
| TGCTGCATATGCCTCAGCCT+TGG | - | chr1.3:11900954-11900973 | MS.gene54548:intron | 55.0% | |
| ! | AGTGCACTCTAGGAGGAGGA+GGG | + | chr1.3:11902059-11902078 | None:intergenic | 55.0% |
| !! | CAGGCATCGGCTATGGAGAT+AGG | - | chr1.3:11902803-11902822 | MS.gene54548:CDS | 55.0% |
| !! | GGGCACTGATATAGTGTCCG+GGG | - | chr1.3:11901740-11901759 | MS.gene54548:intron | 55.0% |
| CTGAACTCCAGCCAAGGCTG+AGG | + | chr1.3:11900968-11900987 | None:intergenic | 60.0% | |
| GAGGCATATGCAGCAGCTCC+TGG | + | chr1.3:11900949-11900968 | None:intergenic | 60.0% | |
| GCATATGCCTCAGCCTTGGC+TGG | - | chr1.3:11900958-11900977 | MS.gene54548:intron | 60.0% | |
| GTGCAGGAAAGCCACTTCGG+AGG | + | chr1.3:11902193-11902212 | None:intergenic | 60.0% | |
| ! | CAGTGCACTCTAGGAGGAGG+AGG | + | chr1.3:11902060-11902079 | None:intergenic | 60.0% |
| ! | GTGCACTCTAGGAGGAGGAG+GGG | + | chr1.3:11902058-11902077 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11899167 | 11903084 | 11899167 | ID=MS.gene54548 |
| chr1.3 | mRNA | 11899167 | 11903084 | 11899167 | ID=MS.gene54548.t1;Parent=MS.gene54548 |
| chr1.3 | exon | 11902993 | 11903084 | 11902993 | ID=MS.gene54548.t1.exon1;Parent=MS.gene54548.t1 |
| chr1.3 | CDS | 11902993 | 11903084 | 11902993 | ID=cds.MS.gene54548.t1;Parent=MS.gene54548.t1 |
| chr1.3 | exon | 11902708 | 11902904 | 11902708 | ID=MS.gene54548.t1.exon2;Parent=MS.gene54548.t1 |
| chr1.3 | CDS | 11902708 | 11902904 | 11902708 | ID=cds.MS.gene54548.t1;Parent=MS.gene54548.t1 |
| chr1.3 | exon | 11901252 | 11901481 | 11901252 | ID=MS.gene54548.t1.exon3;Parent=MS.gene54548.t1 |
| chr1.3 | CDS | 11901252 | 11901481 | 11901252 | ID=cds.MS.gene54548.t1;Parent=MS.gene54548.t1 |
| chr1.3 | exon | 11899167 | 11899445 | 11899167 | ID=MS.gene54548.t1.exon4;Parent=MS.gene54548.t1 |
| chr1.3 | CDS | 11899167 | 11899445 | 11899167 | ID=cds.MS.gene54548.t1;Parent=MS.gene54548.t1 |
| Gene Sequence |
| Protein sequence |
