AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033685


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033685.t1 MTR_1g051165 81.455 275 46 1 10 279 7 281 4.82e-167 464
MS.gene033685.t1 MTR_4g058840 71.111 270 78 0 10 279 4 273 1.02e-142 402
MS.gene033685.t1 MTR_4g058820 71.111 270 78 0 10 279 4 273 1.02e-142 402
MS.gene033685.t1 MTR_4g058810 69.231 273 84 0 7 279 1 273 5.41e-141 397
MS.gene033685.t1 MTR_4g058830 67.456 169 55 0 111 279 51 219 4.64e-79 238
MS.gene033685.t1 MTR_3g085740 33.206 262 161 10 12 270 70 320 9.07e-31 117
MS.gene033685.t1 MTR_4g052320 30.038 263 171 7 11 270 2 254 5.32e-28 108
MS.gene033685.t1 MTR_4g052300 30.038 263 170 8 11 270 2 253 3.75e-26 103
MS.gene033685.t1 MTR_4g052350 30.888 259 163 9 16 270 13 259 2.67e-25 101
MS.gene033685.t1 MTR_7g110130 29.588 267 160 8 16 270 5 255 7.18e-25 100
MS.gene033685.t1 MTR_4g052340 31.274 259 162 9 16 270 13 259 1.75e-24 99.8
MS.gene033685.t1 MTR_7g110140 29.457 258 171 5 16 270 5 254 3.56e-24 98.6
MS.gene033685.t1 MTR_2g090165 28.958 259 173 5 15 270 4 254 1.25e-23 97.1
MS.gene033685.t1 MTR_1g007800 28.340 247 175 2 20 265 6 251 3.88e-23 95.9
MS.gene033685.t1 MTR_6g023590 25.882 255 180 5 16 267 12 260 7.04e-23 95.1
MS.gene033685.t1 MTR_6g035395 26.538 260 165 5 15 270 3 240 7.05e-22 92.0
MS.gene033685.t1 MTR_7g083870 29.167 264 169 7 15 269 33 287 1.08e-21 92.4
MS.gene033685.t1 MTR_7g105460 25.581 258 181 5 16 270 12 261 1.90e-21 91.3
MS.gene033685.t1 MTR_6g023610 28.016 257 168 6 16 265 12 258 2.42e-21 90.9
MS.gene033685.t1 MTR_6g023910 26.054 261 184 5 8 265 4 258 9.44e-21 89.4
MS.gene033685.t1 MTR_7g110160 28.679 265 148 8 15 270 4 236 5.47e-20 87.0
MS.gene033685.t1 MTR_6g023950 26.459 257 176 6 16 267 12 260 1.89e-19 85.9
MS.gene033685.t1 MTR_7g071680 29.348 276 164 11 16 269 28 294 2.28e-19 86.3
MS.gene033685.t1 MTR_7g094510 27.799 259 168 7 17 267 6 253 8.32e-19 84.0
MS.gene033685.t1 MTR_3g020670 28.253 269 171 7 13 269 12 270 1.89e-18 83.2
MS.gene033685.t1 MTR_3g087850 32.990 194 115 7 21 212 30 210 3.46e-18 82.8
MS.gene033685.t1 MTR_7g094520 31.841 201 126 6 17 212 11 205 3.96e-18 82.0
MS.gene033685.t1 MTR_6g023990 25.581 258 177 6 16 267 13 261 5.04e-18 82.0
MS.gene033685.t1 MTR_7g105590 32.292 192 121 5 16 206 7 190 7.24e-18 80.1
MS.gene033685.t1 MTR_4g097510 31.034 203 129 6 18 219 3 195 1.38e-17 80.9
MS.gene033685.t1 MTR_6g023600 24.706 255 183 5 16 267 12 260 1.62e-17 80.5
MS.gene033685.t1 MTR_3g087860 33.152 184 107 6 29 212 28 195 1.64e-17 80.9
MS.gene033685.t1 MTR_7g105580 27.925 265 160 7 16 276 7 244 8.23e-17 78.2
MS.gene033685.t1 MTR_8g442750 30.303 264 164 8 17 270 14 267 1.39e-16 78.6
MS.gene033685.t1 MTR_4g064883 27.206 272 183 10 7 273 2 263 2.33e-16 77.4
MS.gene033685.t1 MTR_4g078630 30.216 278 161 11 8 269 11 271 2.66e-16 77.4
MS.gene033685.t1 MTR_4g105310 28.632 234 135 7 2 212 32 256 8.47e-16 75.9
MS.gene033685.t1 MTR_4g131740 29.851 201 127 4 13 206 36 229 9.03e-16 75.9
MS.gene033685.t1 MTR_1g082760 28.856 201 130 6 12 206 35 228 1.01e-15 75.9
MS.gene033685.t1 MTR_3g068070 26.592 267 169 13 17 273 15 264 3.57e-15 73.9
MS.gene033685.t1 MTR_4g105310 28.632 234 135 7 2 212 32 256 3.93e-15 74.7
MS.gene033685.t1 MTR_3g068085 26.316 266 171 10 17 273 15 264 5.87e-15 73.6
MS.gene033685.t1 MTR_7g107670 26.415 265 174 8 15 269 31 284 1.88e-14 72.4
MS.gene033685.t1 MTR_7g113650 26.038 265 160 10 12 259 35 280 1.92e-14 72.4
MS.gene033685.t1 MTR_6g023600 23.922 255 179 6 16 267 12 254 3.97e-13 68.2
MS.gene033685.t1 MTR_3g068155 24.809 262 180 9 17 273 19 268 1.22e-12 67.0
MS.gene033685.t1 MTR_3g068175 27.692 260 175 12 17 273 17 266 1.47e-12 66.6
MS.gene033685.t1 MTR_7g105570 24.468 188 132 4 86 270 38 218 2.28e-12 65.5
MS.gene033685.t1 MTR_6g088500 24.082 245 165 6 11 236 172 414 3.00e-12 67.0
MS.gene033685.t1 MTR_3g086210 27.168 173 119 4 23 192 57 225 3.11e-12 66.2
MS.gene033685.t1 MTR_4g064887 24.710 259 178 8 17 270 15 261 3.26e-12 65.5
MS.gene033685.t1 MTR_3g068065 25.581 258 171 11 23 273 23 266 3.38e-12 65.5
MS.gene033685.t1 MTR_4g086400 26.699 206 124 8 23 212 10 204 1.97e-11 64.3
MS.gene033685.t1 MTR_4g134660 28.426 197 135 4 17 212 6 197 2.01e-11 62.8
MS.gene033685.t1 MTR_1g068955 27.308 260 166 9 11 260 9 255 4.45e-11 62.4
MS.gene033685.t1 MTR_6g088500 23.502 217 149 4 11 212 172 386 4.55e-11 63.2
MS.gene033685.t1 MTR_8g089575 24.339 189 130 4 23 205 51 232 7.02e-11 62.0
MS.gene033685.t1 MTR_8g096580 28.922 204 123 9 17 212 45 234 7.71e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033685.t1 AT1G63380 62.319 276 101 2 6 279 4 278 1.40e-125 359
MS.gene033685.t1 AT3G55290 64.444 270 94 2 11 279 12 280 1.89e-125 358
MS.gene033685.t1 AT3G55290 64.444 270 94 2 11 279 11 279 2.34e-125 358
MS.gene033685.t1 AT1G63380 62.319 276 101 2 6 279 8 282 2.56e-125 358
MS.gene033685.t1 AT1G62610 62.681 276 100 2 6 279 2 276 3.38e-125 358
MS.gene033685.t1 AT1G62610 62.681 276 100 2 6 279 3 277 3.78e-125 358
MS.gene033685.t1 AT1G62610 62.681 276 100 2 6 279 4 278 3.79e-125 358
MS.gene033685.t1 AT1G63380 62.319 276 101 2 6 279 11 285 5.23e-125 358
MS.gene033685.t1 AT1G62610 62.681 276 100 2 6 279 8 282 6.04e-125 357
MS.gene033685.t1 AT1G63380 62.868 272 98 2 10 279 10 280 6.74e-125 357
MS.gene033685.t1 AT3G55310 63.469 271 97 2 10 279 10 279 2.28e-124 356
MS.gene033685.t1 AT3G46170 63.100 271 98 2 10 279 19 288 9.33e-121 347
MS.gene033685.t1 AT2G17845 62.921 267 96 2 16 279 46 312 1.67e-117 340
MS.gene033685.t1 AT3G01980 31.801 261 173 4 20 276 6 265 1.26e-35 129
MS.gene033685.t1 AT3G01980 31.801 261 173 4 20 276 6 265 1.26e-35 129
MS.gene033685.t1 AT3G01980 32.444 225 148 3 56 276 17 241 2.36e-31 117
MS.gene033685.t1 AT3G01980 28.522 291 173 5 20 276 6 295 3.76e-29 112
MS.gene033685.t1 AT1G24360 30.566 265 164 11 12 270 69 319 5.92e-28 110
MS.gene033685.t1 AT3G51680 29.044 272 168 5 16 269 31 295 1.89e-23 97.4
MS.gene033685.t1 AT3G01980 32.749 171 112 3 20 188 6 175 3.79e-23 94.0
MS.gene033685.t1 AT3G26770 28.623 276 172 9 16 277 40 304 1.75e-22 94.7
MS.gene033685.t1 AT5G06060 31.679 262 162 9 17 273 9 258 2.81e-22 93.6
MS.gene033685.t1 AT2G47120 25.391 256 182 4 16 270 5 252 5.32e-22 92.8
MS.gene033685.t1 AT2G47120 25.391 256 182 4 16 270 6 253 5.47e-22 92.8
MS.gene033685.t1 AT2G47140 28.352 261 170 7 16 270 5 254 7.62e-21 89.4
MS.gene033685.t1 AT5G65205 33.333 201 121 7 18 217 7 195 7.87e-21 90.1
MS.gene033685.t1 AT3G26760 26.792 265 174 6 16 269 35 290 2.22e-20 89.0
MS.gene033685.t1 AT5G10050 30.882 204 122 9 18 217 6 194 9.65e-20 87.0
MS.gene033685.t1 AT2G29150 25.641 273 194 6 1 273 1 264 1.31e-18 83.6
MS.gene033685.t1 AT2G47130 25.581 258 180 5 16 270 5 253 1.75e-18 83.2
MS.gene033685.t1 AT5G18210 29.961 257 164 9 17 265 8 256 5.00e-18 82.0
MS.gene033685.t1 AT3G29250 24.903 257 184 4 16 270 5 254 2.38e-17 80.1
MS.gene033685.t1 AT5G18210 33.824 204 121 7 17 212 8 205 2.40e-17 80.1
MS.gene033685.t1 AT3G03980 27.574 272 169 9 12 267 9 268 2.66e-17 80.1
MS.gene033685.t1 AT3G29250 24.903 257 184 4 16 270 41 290 2.82e-17 80.5
MS.gene033685.t1 AT3G29260 26.236 263 174 7 15 270 4 253 6.98e-17 78.6
MS.gene033685.t1 AT3G29250 25.000 256 183 4 17 270 44 292 7.59e-17 79.3
MS.gene033685.t1 AT1G52340 26.894 264 180 6 15 269 16 275 2.47e-16 77.4
MS.gene033685.t1 AT3G42960 28.358 268 165 8 16 269 7 261 2.33e-15 74.7
MS.gene033685.t1 AT1G54870 27.570 214 139 8 1 206 65 270 2.73e-15 75.1
MS.gene033685.t1 AT1G54870 27.570 214 139 8 1 206 67 272 3.32e-15 75.1
MS.gene033685.t1 AT1G10310 29.534 193 128 5 20 212 18 202 6.25e-15 72.8
MS.gene033685.t1 AT3G47350 27.536 207 143 5 20 226 47 246 1.44e-14 72.8
MS.gene033685.t1 AT1G67730 27.692 195 134 4 23 214 55 245 1.74e-14 72.8
MS.gene033685.t1 AT2G29370 26.119 268 183 8 12 275 11 267 1.85e-14 72.0
MS.gene033685.t1 AT3G47350 27.189 217 150 6 10 226 38 246 2.00e-14 72.4
MS.gene033685.t1 AT2G29260 26.592 267 178 12 12 273 64 317 2.69e-14 72.0
MS.gene033685.t1 AT3G05260 26.038 265 169 10 8 260 28 277 3.85e-14 71.2
MS.gene033685.t1 AT4G03140 28.679 265 168 9 15 269 76 329 1.21e-13 70.5
MS.gene033685.t1 AT2G30670 25.769 260 180 8 17 273 7 256 3.00e-13 68.6
MS.gene033685.t1 AT3G47360 29.381 194 130 5 20 213 48 234 3.26e-13 68.9
MS.gene033685.t1 AT3G04000 23.345 287 188 10 1 270 1 272 4.01e-13 68.2
MS.gene033685.t1 AT1G07440 25.483 259 181 9 17 273 12 260 2.24e-12 66.2
MS.gene033685.t1 AT5G50690 28.500 200 126 7 16 210 44 231 2.70e-12 65.5
MS.gene033685.t1 AT5G50590 28.500 200 126 7 16 210 44 231 2.70e-12 65.5
MS.gene033685.t1 AT5G50130 25.974 231 144 7 2 212 21 244 2.75e-12 65.9
MS.gene033685.t1 AT4G13180 28.643 199 135 6 17 212 13 207 3.19e-12 65.5
MS.gene033685.t1 AT5G50130 25.974 231 144 7 2 212 21 244 3.59e-12 65.9
MS.gene033685.t1 AT5G50130 26.636 214 132 6 19 212 3 211 4.42e-12 65.5
MS.gene033685.t1 AT1G24470 25.789 190 124 5 23 205 56 235 4.84e-12 65.5
MS.gene033685.t1 AT5G50690 28.358 201 127 7 15 210 43 231 5.78e-12 65.1
MS.gene033685.t1 AT5G50590 28.358 201 127 7 15 210 43 231 5.78e-12 65.1
MS.gene033685.t1 AT5G50130 26.636 214 132 6 19 212 3 211 8.32e-12 64.7
MS.gene033685.t1 AT2G29330 25.573 262 178 10 17 273 7 256 9.94e-12 64.3
MS.gene033685.t1 AT2G29310 26.616 263 168 13 17 270 7 253 3.36e-11 62.8
MS.gene033685.t1 AT5G50130 25.431 232 145 8 2 212 21 245 5.28e-11 62.0
MS.gene033685.t1 AT5G50130 25.862 232 144 8 2 212 21 245 6.01e-11 62.4
MS.gene033685.t1 AT2G29320 25.385 260 182 9 17 273 13 263 6.11e-11 62.0
MS.gene033685.t1 AT5G50130 26.512 215 132 7 19 212 3 212 7.61e-11 62.0

Find 77 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGATGATTCGTGAATT+AGG 0.225010 7.1:+21560055 None:intergenic
TTCCATATAGACTATTTATT+TGG 0.229313 7.1:+21561054 None:intergenic
CAGGTCTTGGCTTTCGAATT+GGG 0.253467 7.1:-21560240 MS.gene033685:CDS
AAGGGATCAGTTATTAATAT+TGG 0.259756 7.1:-21560526 MS.gene033685:CDS
AATAACCCCTTTGAGAAGTT+TGG 0.278914 7.1:-21560115 MS.gene033685:CDS
GGATCCTGCATTAATATCTT+TGG 0.326150 7.1:-21560085 MS.gene033685:CDS
ACAGGTCTTGGCTTTCGAAT+TGG 0.326886 7.1:-21560241 MS.gene033685:intron
CACCAAATAAATAGTCTATA+TGG 0.352174 7.1:-21561056 MS.gene033685:CDS
GATGATTCTGCAGCCGGCTT+TGG 0.353435 7.1:+21561118 None:intergenic
ATTAATATTGGTTCAACTGC+TGG 0.369585 7.1:-21560514 MS.gene033685:CDS
ATTTCAGATTTGAAAATTCC+CGG 0.374736 7.1:+21560186 None:intergenic
TGTTAATCAAAGTATCAATA+TGG 0.379618 7.1:+21560943 None:intergenic
ATTAACAATGCTGGTATAAG+AGG 0.382317 7.1:-21560927 MS.gene033685:intron
GTTCAACTGCTGGTTTAAAT+CGG 0.404531 7.1:-21560504 MS.gene033685:CDS
AAACAAACTTAACTGGTTGT+TGG 0.411777 7.1:-21560594 MS.gene033685:CDS
GACAAAGTCGTGTTGGTAAC+CGG 0.419966 7.1:-21561182 MS.gene033685:CDS
TGATTGCGGAGTAACTTTAC+CGG 0.420972 7.1:-21560007 MS.gene033685:CDS
GACTATTTATTTGGTGGCAG+AGG 0.425706 7.1:+21561063 None:intergenic
AGCAGCGATGATTCTGCAGC+CGG 0.444243 7.1:+21561112 None:intergenic
ACCGGCGCTTCCTCCGGCCT+CGG 0.446868 7.1:-21561164 MS.gene033685:CDS
ATTCATAAAGAAGAATAAAT+CGG 0.457661 7.1:+21559979 None:intergenic
ACATAACCAAACTTCTCAAA+GGG 0.461366 7.1:+21560109 None:intergenic
TCATCTTCAGACAAATTCAA+TGG 0.465773 7.1:+21560634 None:intergenic
TGAATTTGTCTGAAGATGAA+TGG 0.466321 7.1:-21560630 MS.gene033685:CDS
CATATAGACTATTTATTTGG+TGG 0.466746 7.1:+21561057 None:intergenic
CAGAAGGCATGGGATGCCTT+TGG 0.469268 7.1:-21560966 MS.gene033685:CDS
TATGTGTGATGCCAAACAAA+AGG 0.471451 7.1:-21560545 MS.gene033685:CDS
TTGGTAACCGGCGCTTCCTC+CGG 0.479164 7.1:-21561170 MS.gene033685:CDS
GAATTTGTCTGAAGATGAAT+GGG 0.494596 7.1:-21560629 MS.gene033685:CDS
GCAGAACTCACGGCCGAGGC+CGG 0.497053 7.1:+21561151 None:intergenic
AGGTCTTGGCTTTCGAATTG+GGG 0.503529 7.1:-21560239 MS.gene033685:CDS
AAGAGTGAATTCAATATCCC+CGG 0.512539 7.1:-21560205 MS.gene033685:CDS
CAAGCTTGTGCCATGGCTCA+AGG 0.522329 7.1:+21561207 None:intergenic
GATACTTTGATTAACAATGC+TGG 0.522623 7.1:-21560936 MS.gene033685:CDS
TTTGAGAAGTTTGGTTATGT+CGG 0.526924 7.1:-21560106 MS.gene033685:CDS
CATCGATAAGTCTGTGCAGA+AGG 0.530934 7.1:-21560982 MS.gene033685:CDS
GATTGCGGAGTAACTTTACC+GGG 0.534190 7.1:-21560006 MS.gene033685:CDS
TCAGTGGCAGCACAACTCTC+AGG 0.539277 7.1:-21561233 MS.gene033685:CDS
GCCGAGGCCGGAGGAAGCGC+CGG 0.539734 7.1:+21561163 None:intergenic
CGAGCCAAAGATATTAATGC+AGG 0.544544 7.1:+21560081 None:intergenic
ACTATTTATTTGGTGGCAGA+GGG 0.545066 7.1:+21561064 None:intergenic
CGATGCAGAACTCACGGCCG+AGG 0.545395 7.1:+21561147 None:intergenic
TGCATCGATCTTGCCAAAGC+CGG 0.547428 7.1:-21561131 MS.gene033685:CDS
ATGTGTGATGCCAAACAAAA+GGG 0.551871 7.1:-21560544 MS.gene033685:CDS
TTCAACAGCCACCGCACGGA+GGG 0.552062 7.1:+21561031 None:intergenic
ATAAGTCTGTGCAGAAGGCA+TGG 0.553691 7.1:-21560977 MS.gene033685:CDS
GCATATACAACTTCAAAGGC+AGG 0.559797 7.1:-21560460 MS.gene033685:CDS
TTGTCGTCAAGCTTGTGCCA+TGG 0.562927 7.1:+21561200 None:intergenic
GACATAACCAAACTTCTCAA+AGG 0.565130 7.1:+21560108 None:intergenic
GAAGAATAAATCGGCAAACC+CGG 0.568159 7.1:+21559988 None:intergenic
TTTCAGATTTGAAAATTCCC+GGG 0.569016 7.1:+21560187 None:intergenic
GAACTCACGGCCGAGGCCGG+AGG 0.569271 7.1:+21561154 None:intergenic
CACAGACTTATCGATGGCGC+TGG 0.572793 7.1:+21560989 None:intergenic
ATATGGAACCCTCCGTGCGG+TGG 0.576855 7.1:-21561039 MS.gene033685:CDS
CGAATCATCTGAATATGTCA+CGG 0.579040 7.1:-21560046 MS.gene033685:CDS
CAAAGTATCAATATGGCCAA+AGG 0.579167 7.1:+21560950 None:intergenic
TAAGTCTGTGCAGAAGGCAT+GGG 0.585736 7.1:-21560976 MS.gene033685:CDS
TCTCAGGACACCTTGAGCCA+TGG 0.588303 7.1:-21561217 MS.gene033685:CDS
AAACTTAACTGGTTGTTGGT+TGG 0.591028 7.1:-21560590 MS.gene033685:CDS
TTAAATCGGACTCAACATCA+TGG 0.606344 7.1:-21560490 MS.gene033685:CDS
AGAGGGAATGAAGACGGTCA+AGG 0.611736 7.1:+21561081 None:intergenic
TTACCATTGTGAGCATGTTG+AGG 0.611780 7.1:+21560437 None:intergenic
GGTCTTGGCTTTCGAATTGG+GGG 0.617653 7.1:-21560238 MS.gene033685:CDS
GAATCATCTGAATATGTCAC+GGG 0.618360 7.1:-21560045 MS.gene033685:CDS
GCTTGACGACAAAGTCGTGT+TGG 0.622965 7.1:-21561189 MS.gene033685:CDS
AGAGTGAATTCAATATCCCC+GGG 0.625630 7.1:-21560204 MS.gene033685:CDS
CAAGATCGATGCAGAACTCA+CGG 0.628198 7.1:+21561141 None:intergenic
CTTCTGCACAGACTTATCGA+TGG 0.628962 7.1:+21560983 None:intergenic
AGTTGCATATACAACTTCAA+AGG 0.629235 7.1:-21560464 MS.gene033685:CDS
GGTGGCAGAGGGAATGAAGA+CGG 0.643098 7.1:+21561075 None:intergenic
CGAGTTCAACAGCCACCGCA+CGG 0.645391 7.1:+21561027 None:intergenic
TTCAGATTTGAAAATTCCCG+GGG 0.666183 7.1:+21560188 None:intergenic
AGGCCTCAACATGCTCACAA+TGG 0.683299 7.1:-21560440 MS.gene033685:intron
GTTCAACAGCCACCGCACGG+AGG 0.693363 7.1:+21561030 None:intergenic
CATAACCAAACTTCTCAAAG+GGG 0.706124 7.1:+21560110 None:intergenic
GGGAATGAAGACGGTCAAGG+CGG 0.722749 7.1:+21561084 None:intergenic
TCTATATGGAACCCTCCGTG+CGG 0.767246 7.1:-21561042 MS.gene033685:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAACTTTTTTTTTTTTTTTA+AGG + chr7.1:21560855-21560874 None:intergenic 10.0%
!! ATTGATTATATAATTAGTAG+CGG + chr7.1:21560282-21560301 None:intergenic 15.0%
!! TATACTATACAAGTAAATAA+AGG + chr7.1:21560351-21560370 None:intergenic 15.0%
!!! AATAATTTTATTGTTGATTG+CGG - chr7.1:21561636-21561655 MS.gene033685:intron 15.0%
!!! GTGTTTTATTTTTTATGTTT+AGG + chr7.1:21560199-21560218 None:intergenic 15.0%
!!! TGCTTAAATAATTTTGATTT+AGG + chr7.1:21559996-21560015 None:intergenic 15.0%
!!! TTTTTCTTTTTTGACATTTT+CGG + chr7.1:21560106-21560125 None:intergenic 15.0%
!! AAACATTAATACAAAAAGCT+TGG - chr7.1:21561499-21561518 MS.gene033685:intron 20.0%
!! AACATAAAAAATAAAACACG+AGG - chr7.1:21560200-21560219 MS.gene033685:CDS 20.0%
!! TAAAAAATTCACATCAAAGT+TGG - chr7.1:21560317-21560336 MS.gene033685:intron 20.0%
!! TTCCATATAGACTATTTATT+TGG + chr7.1:21560606-21560625 None:intergenic 20.0%
!! TTGATTATATAATTAGTAGC+GGG + chr7.1:21560281-21560300 None:intergenic 20.0%
!!! AATTTTCAAATCTGAAATCA+CGG - chr7.1:21561476-21561495 MS.gene033685:intron 20.0%
!!! CGTGTTTTATTTTTTATGTT+TGG + chr7.1:21560200-21560219 None:intergenic 20.0%
!!! TGTGATATTTGATTTTTAAG+TGG + chr7.1:21561341-21561360 None:intergenic 20.0%
!!! TGTTAATCAAAGTATCAATA+TGG + chr7.1:21560717-21560736 None:intergenic 20.0%
! AAGGGATCAGTTATTAATAT+TGG - chr7.1:21561131-21561150 MS.gene033685:CDS 25.0%
! ACTATACAAGTAAATAAAGG+TGG + chr7.1:21560348-21560367 None:intergenic 25.0%
! ATGTTTCTTATCAATATGAC+CGG - chr7.1:21560932-21560951 MS.gene033685:CDS 25.0%
! ATTTCAGATTTGAAAATTCC+CGG + chr7.1:21561474-21561493 None:intergenic 25.0%
! CACCAAATAAATAGTCTATA+TGG - chr7.1:21560601-21560620 MS.gene033685:CDS 25.0%
! CATATAGACTATTTATTTGG+TGG + chr7.1:21560603-21560622 None:intergenic 25.0%
! GAATTGGAATTAACAGTTAA+AGG + chr7.1:21560394-21560413 None:intergenic 25.0%
! TTGCTAGAAAATACTTTAAC+CGG + chr7.1:21560954-21560973 None:intergenic 25.0%
!! GTTTTCAAAACAAACTTAAC+TGG - chr7.1:21561056-21561075 MS.gene033685:CDS 25.0%
!!! AAAGTTGATGTTGATGTATT+TGG - chr7.1:21560868-21560887 MS.gene033685:intron 25.0%
!!! ATCGTTTTAAATTATCTTCG+TGG - chr7.1:21561287-21561306 MS.gene033685:intron 25.0%
!!! TAATGAGAGTGATTTTTAAG+TGG + chr7.1:21561314-21561333 None:intergenic 25.0%
AAACAAACTTAACTGGTTGT+TGG - chr7.1:21561063-21561082 MS.gene033685:CDS 30.0%
ACATAACCAAACTTCTCAAA+GGG + chr7.1:21561551-21561570 None:intergenic 30.0%
AGTTGCATATACAACTTCAA+AGG - chr7.1:21561193-21561212 MS.gene033685:CDS 30.0%
ATAAAAAAGACTAGAGAGAG+TGG + chr7.1:21560794-21560813 None:intergenic 30.0%
ATTAACAATGCTGGTATAAG+AGG - chr7.1:21560730-21560749 MS.gene033685:intron 30.0%
ATTCAGATGATTCGTGAATT+AGG + chr7.1:21561605-21561624 None:intergenic 30.0%
GAATTTGTCTGAAGATGAAT+GGG - chr7.1:21561028-21561047 MS.gene033685:CDS 30.0%
GATACTTTGATTAACAATGC+TGG - chr7.1:21560721-21560740 MS.gene033685:intron 30.0%
TAGTGACACAAACTTGAAAA+AGG + chr7.1:21560071-21560090 None:intergenic 30.0%
TCATCTTCAGACAAATTCAA+TGG + chr7.1:21561026-21561045 None:intergenic 30.0%
TGAATTTGTCTGAAGATGAA+TGG - chr7.1:21561027-21561046 MS.gene033685:CDS 30.0%
TTATGTTTAGGAGATGAACA+TGG + chr7.1:21560187-21560206 None:intergenic 30.0%
TTTCAGATTTGAAAATTCCC+GGG + chr7.1:21561473-21561492 None:intergenic 30.0%
TTTGAGAAGTTTGGTTATGT+CGG - chr7.1:21561551-21561570 MS.gene033685:intron 30.0%
! AATAACTGATCCCTTTTGTT+TGG + chr7.1:21561126-21561145 None:intergenic 30.0%
!! ATTAATATTGGTTCAACTGC+TGG - chr7.1:21561143-21561162 MS.gene033685:CDS 30.0%
!!! TTGTCTTGTTTTGTTTGTGT+AGG - chr7.1:21560987-21561006 MS.gene033685:CDS 30.0%
AAACTTAACTGGTTGTTGGT+TGG - chr7.1:21561067-21561086 MS.gene033685:CDS 35.0%
AAGAGTGAATTCAATATCCC+CGG - chr7.1:21561452-21561471 MS.gene033685:intron 35.0%
ACAAAACAAGACAAGCTTGT+TGG + chr7.1:21560981-21561000 None:intergenic 35.0%
ATGTGTGATGCCAAACAAAA+GGG - chr7.1:21561113-21561132 MS.gene033685:CDS 35.0%
CAATTCTATTCACAAGTCAG+TGG - chr7.1:21560408-21560427 MS.gene033685:intron 35.0%
CATAACCAAACTTCTCAAAG+GGG + chr7.1:21561550-21561569 None:intergenic 35.0%
CGAATCATCTGAATATGTCA+CGG - chr7.1:21561611-21561630 MS.gene033685:intron 35.0%
GAATCATCTGAATATGTCAC+GGG - chr7.1:21561612-21561631 MS.gene033685:intron 35.0%
GACATAACCAAACTTCTCAA+AGG + chr7.1:21561552-21561571 None:intergenic 35.0%
GGATCCTGCATTAATATCTT+TGG - chr7.1:21561572-21561591 MS.gene033685:intron 35.0%
TATGTGTGATGCCAAACAAA+AGG - chr7.1:21561112-21561131 MS.gene033685:CDS 35.0%
TTAAATCGGACTCAACATCA+TGG - chr7.1:21561167-21561186 MS.gene033685:CDS 35.0%
TTCAGATTTGAAAATTCCCG+GGG + chr7.1:21561472-21561491 None:intergenic 35.0%
! AATAACCCCTTTGAGAAGTT+TGG - chr7.1:21561542-21561561 MS.gene033685:intron 35.0%
! ACTATTTATTTGGTGGCAGA+GGG + chr7.1:21560596-21560615 None:intergenic 35.0%
! CAAAGTATCAATATGGCCAA+AGG + chr7.1:21560710-21560729 None:intergenic 35.0%
!! CACTGACTTGTGAATAGAAT+TGG + chr7.1:21560410-21560429 None:intergenic 35.0%
!! GTTCAACTGCTGGTTTAAAT+CGG - chr7.1:21561153-21561172 MS.gene033685:CDS 35.0%
AGAGTGAATTCAATATCCCC+GGG - chr7.1:21561453-21561472 MS.gene033685:intron 40.0%
CGAGCCAAAGATATTAATGC+AGG + chr7.1:21561579-21561598 None:intergenic 40.0%
GAAGAATAAATCGGCAAACC+CGG + chr7.1:21561672-21561691 None:intergenic 40.0%
GCATATACAACTTCAAAGGC+AGG - chr7.1:21561197-21561216 MS.gene033685:CDS 40.0%
TATTTGACAGGTCTTGGCTT+TGG - chr7.1:21561378-21561397 MS.gene033685:intron 40.0%
TGATTGCGGAGTAACTTTAC+CGG - chr7.1:21561650-21561669 MS.gene033685:intron 40.0%
TGGAATTGGGGATATTTGAC+AGG - chr7.1:21561398-21561417 MS.gene033685:intron 40.0%
TTACCATTGTGAGCATGTTG+AGG + chr7.1:21561223-21561242 None:intergenic 40.0%
! GACTATTTATTTGGTGGCAG+AGG + chr7.1:21560597-21560616 None:intergenic 40.0%
!! AAACAAGACAAGCTTGTTGG+AGG + chr7.1:21560978-21560997 None:intergenic 40.0%
ATAAGTCTGTGCAGAAGGCA+TGG - chr7.1:21560680-21560699 MS.gene033685:intron 45.0%
CAAGATCGATGCAGAACTCA+CGG + chr7.1:21560519-21560538 None:intergenic 45.0%
CATCGATAAGTCTGTGCAGA+AGG - chr7.1:21560675-21560694 MS.gene033685:intron 45.0%
CTTCTGCACAGACTTATCGA+TGG + chr7.1:21560677-21560696 None:intergenic 45.0%
GATTGCGGAGTAACTTTACC+GGG - chr7.1:21561651-21561670 MS.gene033685:intron 45.0%
TGGGGATATTTGACAGGTCT+TGG - chr7.1:21561404-21561423 MS.gene033685:intron 45.0%
! ACAGGTCTTGGCTTTCGAAT+TGG - chr7.1:21561416-21561435 MS.gene033685:intron 45.0%
! AGGTCTTGGCTTTCGAATTG+GGG - chr7.1:21561418-21561437 MS.gene033685:intron 45.0%
! CAGGTCTTGGCTTTCGAATT+GGG - chr7.1:21561417-21561436 MS.gene033685:intron 45.0%
! TAAGTCTGTGCAGAAGGCAT+GGG - chr7.1:21560681-21560700 MS.gene033685:intron 45.0%
!! ACAGGTCTTGGCTTTGGAAT+TGG - chr7.1:21561384-21561403 MS.gene033685:intron 45.0%
!! AGGTCTTGGCTTTGGAATTG+GGG - chr7.1:21561386-21561405 MS.gene033685:intron 45.0%
!! CAGGTCTTGGCTTTGGAATT+GGG - chr7.1:21561385-21561404 MS.gene033685:intron 45.0%
!! GACAAAGTCGTGTTGGTAAC+CGG - chr7.1:21560475-21560494 MS.gene033685:CDS 45.0%
!!! TTTTATTAAATTGTTTTTTA+TGG - chr7.1:21560043-21560062 MS.gene033685:CDS 5.0%
AGAGGGAATGAAGACGGTCA+AGG + chr7.1:21560579-21560598 None:intergenic 50.0%
AGGCCTCAACATGCTCACAA+TGG - chr7.1:21561217-21561236 MS.gene033685:CDS 50.0%
CAAATATCGCGCTACTGGAG+AGG + chr7.1:21561364-21561383 None:intergenic 50.0%
CCAGTAGCGCGATATTTGAC+AGG - chr7.1:21561366-21561385 MS.gene033685:intron 50.0%
CCTGTCAAATATCGCGCTAC+TGG + chr7.1:21561369-21561388 None:intergenic 50.0%
GCGCGATATTTGACAGGTCT+TGG - chr7.1:21561372-21561391 MS.gene033685:intron 50.0%
GCTTGACGACAAAGTCGTGT+TGG - chr7.1:21560468-21560487 MS.gene033685:CDS 50.0%
TCTATATGGAACCCTCCGTG+CGG - chr7.1:21560615-21560634 MS.gene033685:CDS 50.0%
TTGTCGTCAAGCTTGTGCCA+TGG + chr7.1:21560460-21560479 None:intergenic 50.0%
! GGTCTTGGCTTTCGAATTGG+GGG - chr7.1:21561419-21561438 MS.gene033685:intron 50.0%
! TGCATCGATCTTGCCAAAGC+CGG - chr7.1:21560526-21560545 MS.gene033685:CDS 50.0%
AGCAGCGATGATTCTGCAGC+CGG + chr7.1:21560548-21560567 None:intergenic 55.0%
CAAGCTTGTGCCATGGCTCA+AGG + chr7.1:21560453-21560472 None:intergenic 55.0%
CACAGACTTATCGATGGCGC+TGG + chr7.1:21560671-21560690 None:intergenic 55.0%
GGGAATGAAGACGGTCAAGG+CGG + chr7.1:21560576-21560595 None:intergenic 55.0%
GGTGGCAGAGGGAATGAAGA+CGG + chr7.1:21560585-21560604 None:intergenic 55.0%
TCAGTGGCAGCACAACTCTC+AGG - chr7.1:21560424-21560443 MS.gene033685:intron 55.0%
TCTCAGGACACCTTGAGCCA+TGG - chr7.1:21560440-21560459 MS.gene033685:intron 55.0%
! CAGAAGGCATGGGATGCCTT+TGG - chr7.1:21560691-21560710 MS.gene033685:intron 55.0%
! GATGATTCTGCAGCCGGCTT+TGG + chr7.1:21560542-21560561 None:intergenic 55.0%
ATATGGAACCCTCCGTGCGG+TGG - chr7.1:21560618-21560637 MS.gene033685:CDS 60.0%
CGAGTTCAACAGCCACCGCA+CGG + chr7.1:21560633-21560652 None:intergenic 60.0%
TTCAACAGCCACCGCACGGA+GGG + chr7.1:21560629-21560648 None:intergenic 60.0%
! TTGGTAACCGGCGCTTCCTC+CGG - chr7.1:21560487-21560506 MS.gene033685:CDS 60.0%
CGATGCAGAACTCACGGCCG+AGG + chr7.1:21560513-21560532 None:intergenic 65.0%
GTTCAACAGCCACCGCACGG+AGG + chr7.1:21560630-21560649 None:intergenic 65.0%
GCAGAACTCACGGCCGAGGC+CGG + chr7.1:21560509-21560528 None:intergenic 70.0%
ACCGGCGCTTCCTCCGGCCT+CGG - chr7.1:21560493-21560512 MS.gene033685:CDS 75.0%
GAACTCACGGCCGAGGCCGG+AGG + chr7.1:21560506-21560525 None:intergenic 75.0%
!! GCCGAGGCCGGAGGAAGCGC+CGG + chr7.1:21560497-21560516 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 21559981 21561698 21559981 ID=MS.gene033685
chr7.1 mRNA 21559981 21561698 21559981 ID=MS.gene033685.t1;Parent=MS.gene033685
chr7.1 exon 21561696 21561698 21561696 ID=MS.gene033685.t1.exon1;Parent=MS.gene033685.t1
chr7.1 CDS 21561696 21561698 21561696 ID=cds.MS.gene033685.t1;Parent=MS.gene033685.t1
chr7.1 exon 21560928 21561255 21560928 ID=MS.gene033685.t1.exon2;Parent=MS.gene033685.t1
chr7.1 CDS 21560928 21561255 21560928 ID=cds.MS.gene033685.t1;Parent=MS.gene033685.t1
chr7.1 exon 21560441 21560670 21560441 ID=MS.gene033685.t1.exon3;Parent=MS.gene033685.t1
chr7.1 CDS 21560441 21560670 21560441 ID=cds.MS.gene033685.t1;Parent=MS.gene033685.t1
chr7.1 exon 21559981 21560259 21559981 ID=MS.gene033685.t1.exon4;Parent=MS.gene033685.t1
chr7.1 CDS 21559981 21560259 21559981 ID=cds.MS.gene033685.t1;Parent=MS.gene033685.t1
Gene Sequence

>MS.gene033685

ATGGTTACAAAGCCTAAATCAAAATTATTTAAGCACATTTGATTTAATTGTGACAAAATACATTTTATTAAATTGTTTTTTATGGCACCTTTTTCAAGTTTGTGTCACTATAATTATATAATCCGAAAATGTCAAAAAAGAAAAAGTAACAAAAAAAAAAAGTTTGTGTGACTATCTAAATGAATTATACTTAAGAGTTGTGACCATGTTCATCTCCTAAACATAAAAAATAAAACACGAGAAAGCTGTTACTAATAATCAATTGCAATCCAAACATAAAAAATAAAACACGAGGAACCCGCTACTAATTATATAATCAATTGCAATTTATCTATATAAAAAATTCACATCAAAGTTGGTGTGTCCACCTTTATTTACTTGTATAGTATAAATAACTAAACATCTCTTTGCCTTTAACTGTTAATTCCAATTCTATTCACAAGTCAGTGGCAGCACAACTCTCAGGACACCTTGAGCCATGGCACAAGCTTGACGACAAAGTCGTGTTGGTAACCGGCGCTTCCTCCGGCCTCGGCCGTGAGTTCTGCATCGATCTTGCCAAAGCCGGCTGCAGAATCATCGCTGCTGCTCGCCGCCTTGACCGTCTTCATTCCCTCTGCCACCAAATAAATAGTCTATATGGAACCCTCCGTGCGGTGGCTGTTGAACTCGACGTCTCTGCAGATGCCAGCGCCATCGATAAGTCTGTGCAGAAGGCATGGGATGCCTTTGGCCATATTGATACTTTGATTAACAATGCTGGTATAAGAGGTATAATAAAGATAATTTTCAACTAAGCAAATTATTTTTCCACTCTCTCTAGTCTTTTTTATACATGACATTTGAGTTAACAAAAGTTGATGTTGATGTTCCTTAAAAAAAAAAAAAAAGTTGATGTTGATGTATTTGGTTTAAAATTTAGATCAAATACGTCAGCTTTTATTGACTCAAATGTTTCTTATCAATATGACCGGTTAAAGTATTTTCTAGCAAACCTCCAACAAGCTTGTCTTGTTTTGTTTGTGTAGGAAGTGTTAATTCTCCATTGAATTTGTCTGAAGATGAATGGGATAATGTTTTCAAAACAAACTTAACTGGTTGTTGGTTGGTGTCAAAATATGTATGCAAACGTATGTGTGATGCCAAACAAAAGGGATCAGTTATTAATATTGGTTCAACTGCTGGTTTAAATCGGACTCAACATCATGGAGCAGTTGCATATACAACTTCAAAGGCAGGCCTCAACATGCTCACAATGGTAATATTATTTGACACGTCTGATTTTTATTTTCTTTTAAATAAGAACATCGTTTTAAATTATCTTCGTGGTCCACTTAAAAATCACTCTCATTATGATCCACTTAAAAATCAAATATCACACCTCTCCAGTAGCGCGATATTTGACAGGTCTTGGCTTTGGAATTGGGGATATTTGACAGGTCTTGGCTTTCGAATTGGGGGTTTACAAAATAAGAGTGAATTCAATATCCCCGGGAATTTTCAAATCTGAAATCACGGAAACATTAATACAAAAAGCTTGGCTGAATAATGTGATCGCAAAAATAACCCCTTTGAGAAGTTTGGTTATGTCGGATCCTGCATTAATATCTTTGGCTCGTTACCTAATTCACGAATCATCTGAATATGTCACGGGTAATAATTTTATTGTTGATTGCGGAGTAACTTTACCGGGTTTGCCGATTTATTCTTCTTTATGA

Protein sequence

>MS.gene033685.t1

MSVAAQLSGHLEPWHKLDDKVVLVTGASSGLGREFCIDLAKAGCRIIAAARRLDRLHSLCHQINSLYGTLRAVAVELDVSADASAIDKSVQKAWDAFGHIDTLINNAGIRGSVNSPLNLSEDEWDNVFKTNLTGCWLVSKYVCKRMCDAKQKGSVINIGSTAGLNRTQHHGAVAYTTSKAGLNMLTMVLAFELGVYKIRVNSISPGIFKSEITETLIQKAWLNNVIAKITPLRSLVMSDPALISLARYLIHESSEYVTGNNFIVDCGVTLPGLPIYSSL