AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008162

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008162.t1 MTR_3g068065 95.604 273 10 1 1 271 1 273 0.0 535
MS.gene008162.t1 MTR_3g068085 84.444 270 42 0 1 270 1 270 9.20e-166 461
MS.gene008162.t1 MTR_3g068070 81.818 264 48 0 1 264 1 264 2.46e-161 450
MS.gene008162.t1 MTR_3g068155 72.587 259 71 0 12 270 16 274 1.03e-141 401
MS.gene008162.t1 MTR_3g068175 70.769 260 76 0 11 270 13 272 1.40e-135 385
MS.gene008162.t1 MTR_3g068175 69.697 264 76 1 11 270 13 276 2.01e-133 380
MS.gene008162.t1 MTR_4g064883 59.375 256 104 0 12 267 11 266 5.96e-115 333
MS.gene008162.t1 MTR_4g064887 59.924 262 105 0 1 262 1 262 1.52e-114 332
MS.gene008162.t1 MTR_7g063270 57.915 259 106 1 6 261 7 265 5.47e-101 297
MS.gene008162.t1 MTR_7g063320 55.894 263 112 1 1 259 1 263 6.30e-101 297
MS.gene008162.t1 MTR_7g063260 56.154 260 110 1 6 261 7 266 5.12e-99 292
MS.gene008162.t1 MTR_7g063330 56.641 256 108 2 9 261 9 264 1.17e-96 286
MS.gene008162.t1 MTR_7g063360 56.371 259 109 2 6 260 7 265 2.04e-96 285
MS.gene008162.t1 MTR_7g063390 54.054 259 115 1 6 260 7 265 3.14e-95 283
MS.gene008162.t1 MTR_4g064887 61.765 204 78 0 1 204 1 204 3.15e-90 268
MS.gene008162.t1 MTR_4g064883 60.104 193 77 0 12 204 11 203 1.27e-84 254
MS.gene008162.t1 MTR_7g063270 48.649 259 81 3 6 261 7 216 2.47e-73 225
MS.gene008162.t1 MTR_4g132850 32.927 246 160 4 15 259 7 248 1.47e-33 124
MS.gene008162.t1 MTR_7g094510 32.540 252 160 8 15 259 6 254 6.68e-27 106
MS.gene008162.t1 MTR_7g094520 33.074 257 152 10 15 259 11 259 7.43e-27 106
MS.gene008162.t1 MTR_3g085740 29.508 244 161 5 21 259 81 318 7.94e-26 105
MS.gene008162.t1 MTR_7g083870 31.022 274 161 9 9 261 22 288 5.49e-25 102
MS.gene008162.t1 MTR_7g071680 30.282 284 160 8 8 262 22 296 5.76e-25 102
MS.gene008162.t1 MTR_4g058810 29.231 260 171 9 15 264 11 267 6.84e-23 95.9
MS.gene008162.t1 MTR_4g058840 28.846 260 172 9 15 264 11 267 9.67e-23 95.5
MS.gene008162.t1 MTR_4g058820 28.846 260 172 9 15 264 11 267 9.67e-23 95.5
MS.gene008162.t1 MTR_1196s0010 30.864 243 157 6 20 259 279 513 1.03e-22 98.6
MS.gene008162.t1 MTR_3g068075 88.000 50 5 1 123 171 1 50 4.19e-22 88.6
MS.gene008162.t1 MTR_7g107670 27.925 265 176 7 7 261 26 285 4.63e-21 91.7
MS.gene008162.t1 MTR_6g023590 28.195 266 173 8 5 259 3 261 3.31e-19 85.9
MS.gene008162.t1 MTR_4g078630 30.000 260 163 10 15 261 19 272 5.92e-19 85.5
MS.gene008162.t1 MTR_4g131740 27.715 267 181 6 6 263 31 294 6.98e-19 85.5
MS.gene008162.t1 MTR_4g052350 29.231 260 165 10 15 264 14 264 3.23e-18 83.2
MS.gene008162.t1 MTR_8g442750 27.099 262 164 7 15 259 14 265 6.13e-18 82.8
MS.gene008162.t1 MTR_6g023990 28.409 264 171 9 7 259 6 262 1.37e-17 81.3
MS.gene008162.t1 MTR_4g052320 27.451 255 177 6 15 264 8 259 1.70e-17 80.9
MS.gene008162.t1 MTR_6g023910 28.571 266 172 9 5 259 3 261 3.43e-17 80.1
MS.gene008162.t1 MTR_3g020670 29.856 278 169 11 1 260 1 270 4.70e-17 80.1
MS.gene008162.t1 MTR_1g068955 29.457 258 169 8 15 263 14 267 7.75e-17 79.3
MS.gene008162.t1 MTR_7g105590 29.570 186 124 4 15 197 8 189 1.00e-16 77.4
MS.gene008162.t1 MTR_6g023600 28.195 266 173 8 5 259 3 261 1.43e-16 78.6
MS.gene008162.t1 MTR_8g089575 31.188 202 112 5 17 202 47 237 1.83e-16 79.0
MS.gene008162.t1 MTR_4g052340 29.478 268 156 12 15 265 14 265 2.49e-16 77.8
MS.gene008162.t1 MTR_2g090165 26.792 265 183 7 11 268 2 262 6.15e-16 76.6
MS.gene008162.t1 MTR_6g023610 27.715 267 173 9 5 259 3 261 8.87e-16 76.3
MS.gene008162.t1 MTR_4g052300 25.969 258 176 7 15 264 8 258 3.44e-15 74.3
MS.gene008162.t1 MTR_4g058830 31.098 164 106 6 106 264 52 213 6.53e-15 72.8
MS.gene008162.t1 MTR_7g110130 28.727 275 173 11 11 272 2 266 1.11e-14 73.2
MS.gene008162.t1 MTR_6g023950 27.675 271 168 10 5 259 3 261 1.18e-14 72.8
MS.gene008162.t1 MTR_6g023600 27.444 266 169 8 5 259 3 255 1.66e-14 72.4
MS.gene008162.t1 MTR_1g051165 25.292 257 176 10 21 263 20 274 2.78e-14 72.0
MS.gene008162.t1 MTR_1g082760 26.459 257 178 6 15 263 40 293 3.06e-14 72.0
MS.gene008162.t1 MTR_5g098650 66.000 50 17 0 221 270 124 173 6.35e-14 68.9
MS.gene008162.t1 MTR_7g110140 25.954 262 186 6 11 267 2 260 1.43e-13 69.7
MS.gene008162.t1 MTR_7g105460 27.969 261 160 10 15 260 13 260 1.45e-13 70.1
MS.gene008162.t1 MTR_3g098470 32.653 147 97 2 8 154 25 169 5.21e-13 68.9
MS.gene008162.t1 MTR_7g110160 28.125 256 156 7 11 260 2 235 6.86e-13 67.8
MS.gene008162.t1 MTR_3g086210 27.228 202 124 4 17 204 53 245 2.30e-12 67.0
MS.gene008162.t1 MTR_1579s0020 34.091 88 57 1 181 268 1 87 1.08e-11 60.5
MS.gene008162.t1 MTR_8g044240 26.131 199 137 5 15 204 69 266 2.12e-11 64.3
MS.gene008162.t1 MTR_7g080410 26.230 183 125 4 22 197 45 224 3.45e-11 63.5
MS.gene008162.t1 MTR_7g080410 26.178 191 131 4 22 205 45 232 3.82e-11 63.2
MS.gene008162.t1 MTR_3g113870 26.257 179 126 3 28 204 34 208 7.24e-11 61.6
MS.gene008162.t1 MTR_1563s0010 27.815 151 103 2 6 151 100 249 9.67e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008162.t1 AT5G06060 67.315 257 84 0 12 268 6 262 5.26e-128 365
MS.gene008162.t1 AT2G29150 60.385 260 102 1 5 264 6 264 8.76e-115 332
MS.gene008162.t1 AT2G29290 61.479 257 97 1 12 266 4 260 3.16e-113 328
MS.gene008162.t1 AT2G29350 60.000 265 103 2 1 264 1 263 4.20e-112 325
MS.gene008162.t1 AT2G29260 60.000 255 102 0 12 266 65 319 2.64e-111 325
MS.gene008162.t1 AT2G29360 58.491 265 109 1 1 264 1 265 7.80e-110 320
MS.gene008162.t1 AT1G07440 58.397 262 106 2 7 266 4 264 4.81e-108 315
MS.gene008162.t1 AT2G29370 56.226 265 115 1 1 264 1 265 1.01e-104 307
MS.gene008162.t1 AT2G29340 57.529 259 108 1 12 268 4 262 1.56e-103 303
MS.gene008162.t1 AT2G29340 57.977 257 106 1 12 266 4 260 5.60e-103 304
MS.gene008162.t1 AT1G07450 58.498 253 104 1 12 264 5 256 1.46e-102 301
MS.gene008162.t1 AT2G30670 58.103 253 106 0 12 264 4 256 4.12e-102 300
MS.gene008162.t1 AT2G29330 58.915 258 102 3 12 266 4 260 1.09e-101 299
MS.gene008162.t1 AT2G29290 60.338 237 92 1 32 266 7 243 1.22e-100 295
MS.gene008162.t1 AT2G29310 56.522 253 110 0 12 264 4 256 5.00e-99 292
MS.gene008162.t1 AT2G29320 57.198 257 107 2 13 266 11 267 6.53e-98 290
MS.gene008162.t1 AT2G29300 55.426 258 112 2 12 266 4 261 1.30e-96 286
MS.gene008162.t1 AT2G29350 59.735 226 88 2 40 264 2 225 7.72e-94 278
MS.gene008162.t1 AT2G29300 55.600 250 110 1 12 260 4 253 1.25e-93 279
MS.gene008162.t1 AT2G29320 56.067 239 102 2 31 266 11 249 4.76e-87 261
MS.gene008162.t1 AT2G29310 55.128 234 105 0 31 264 21 254 1.61e-86 260
MS.gene008162.t1 AT2G29350 59.709 206 83 0 1 206 1 206 2.23e-86 258
MS.gene008162.t1 AT2G29340 57.732 194 82 0 12 205 4 197 1.05e-76 233
MS.gene008162.t1 AT2G29340 57.732 194 82 0 12 205 4 197 1.05e-76 233
MS.gene008162.t1 AT2G29310 56.923 195 84 0 12 206 4 198 6.83e-75 228
MS.gene008162.t1 AT2G29320 58.115 191 79 1 13 202 11 201 4.08e-73 224
MS.gene008162.t1 AT1G07440 58.282 163 68 0 9 171 6 168 7.02e-65 202
MS.gene008162.t1 AT2G29310 55.114 176 79 0 31 206 21 196 3.48e-62 196
MS.gene008162.t1 AT2G29170 59.804 102 40 1 1 101 1 102 1.41e-34 122
MS.gene008162.t1 AT4G05530 33.333 246 159 5 15 259 9 250 1.67e-33 124
MS.gene008162.t1 AT5G18210 33.716 261 158 8 10 259 3 259 1.16e-29 114
MS.gene008162.t1 AT3G03980 32.046 259 159 7 15 259 14 269 2.01e-27 108
MS.gene008162.t1 AT4G13180 33.208 265 162 10 5 259 2 261 3.89e-27 107
MS.gene008162.t1 AT1G24360 30.204 245 158 7 21 259 80 317 1.29e-26 107
MS.gene008162.t1 AT5G18210 32.567 261 148 9 10 259 3 246 5.18e-25 102
MS.gene008162.t1 AT3G04000 32.714 269 161 9 6 258 5 269 4.54e-23 96.7
MS.gene008162.t1 AT3G55310 28.185 259 175 7 15 264 17 273 1.07e-22 95.5
MS.gene008162.t1 AT3G55290 28.185 259 175 7 15 264 18 274 1.82e-22 95.1
MS.gene008162.t1 AT3G55290 28.185 259 175 7 15 264 17 273 1.96e-22 95.1
MS.gene008162.t1 AT1G54870 31.128 257 166 6 15 263 82 335 9.88e-22 94.0
MS.gene008162.t1 AT1G54870 31.128 257 166 6 15 263 84 337 1.06e-21 94.0
MS.gene008162.t1 AT3G46170 28.682 258 173 7 15 263 26 281 2.06e-21 92.4
MS.gene008162.t1 AT1G63380 27.106 273 187 6 1 263 1 271 6.25e-21 90.9
MS.gene008162.t1 AT1G63380 27.413 259 176 6 15 263 17 273 7.82e-21 90.5
MS.gene008162.t1 AT1G63380 27.413 259 176 6 15 263 19 275 8.48e-21 90.5
MS.gene008162.t1 AT1G62610 26.740 273 188 6 1 263 1 271 8.53e-21 90.5
MS.gene008162.t1 AT1G62610 27.027 259 177 6 15 263 19 275 1.06e-20 90.1
MS.gene008162.t1 AT1G62610 27.027 259 177 6 15 263 13 269 1.06e-20 90.1
MS.gene008162.t1 AT1G62610 27.027 259 177 6 15 263 14 270 1.16e-20 90.1
MS.gene008162.t1 AT3G26760 28.839 267 170 7 8 260 30 290 1.27e-20 90.5
MS.gene008162.t1 AT1G63380 27.413 259 176 6 15 263 22 278 1.28e-20 90.1
MS.gene008162.t1 AT2G17845 27.099 262 177 7 15 264 47 306 3.48e-20 89.4
MS.gene008162.t1 AT3G05260 30.469 256 168 6 15 263 37 289 1.84e-18 84.0
MS.gene008162.t1 AT2G47130 28.906 256 171 7 11 260 2 252 3.68e-18 82.8
MS.gene008162.t1 AT2G47120 27.444 266 173 11 11 267 2 256 1.70e-17 80.9
MS.gene008162.t1 AT2G47120 27.481 262 170 11 15 267 7 257 2.54e-17 80.5
MS.gene008162.t1 AT3G12800 25.098 255 179 6 15 259 10 262 3.19e-17 80.9
MS.gene008162.t1 AT1G52340 29.008 262 166 8 15 260 18 275 9.64e-17 79.3
MS.gene008162.t1 AT3G26770 27.519 258 172 5 15 261 41 294 1.56e-16 79.0
MS.gene008162.t1 AT3G51680 25.940 266 175 7 15 260 32 295 6.34e-16 77.0
MS.gene008162.t1 AT3G42960 29.455 275 163 11 20 278 13 272 6.53e-16 76.6
MS.gene008162.t1 AT4G03140 24.609 256 179 5 15 260 78 329 1.06e-13 71.2
MS.gene008162.t1 AT3G29260 27.237 257 174 7 11 260 2 252 1.29e-13 70.1
MS.gene008162.t1 AT2G47140 27.165 254 171 8 15 260 6 253 6.38e-13 67.8
MS.gene008162.t1 AT3G06060 26.768 198 138 2 9 203 31 224 1.98e-12 67.4
MS.gene008162.t1 AT3G06060 26.768 198 138 2 9 203 48 241 2.22e-12 67.4
MS.gene008162.t1 AT1G49670 28.436 211 130 7 17 211 6 211 2.69e-12 67.8
MS.gene008162.t1 AT1G49670 28.436 211 130 7 17 211 6 211 2.72e-12 67.8
MS.gene008162.t1 AT1G10310 28.641 206 139 5 19 223 19 217 5.12e-12 65.1
MS.gene008162.t1 AT5G04900 29.444 180 119 5 18 191 80 257 6.38e-12 65.9
MS.gene008162.t1 AT4G13250 25.391 256 152 8 21 243 165 414 7.69e-12 66.2
MS.gene008162.t1 AT1G67730 24.201 219 137 5 1 205 41 244 3.51e-11 63.5

Find 61 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTACACGCTGCGTATA+TGG 0.258151 3.4:+69091606 None:intergenic
ACTTAATTAATCACTTCTTA+TGG 0.284170 3.4:+69091012 None:intergenic
GGACAAGTTATTTCTGTTGA+TGG 0.321935 3.4:-69091070 MS.gene008162:CDS
TATCCTCTTCTTAAAGAATC+TGG 0.324082 3.4:-69091688 MS.gene008162:CDS
AATGGGCAGAAGACAATATA+AGG 0.355538 3.4:-69091442 MS.gene008162:CDS
GTAGAGGAACTTGCTGAGTT+TGG 0.369806 3.4:-69092589 MS.gene008162:CDS
AAAGGGTCACATACTCTTGC+TGG 0.374350 3.4:-69090752 MS.gene008162:CDS
ATCACTTCTTATGGTCATGC+TGG 0.390380 3.4:+69091021 None:intergenic
TCCGTTGTATACTCAATTGT+TGG 0.398000 3.4:+69091772 None:intergenic
CTTCTTAAAGAATCTGGAAA+TGG 0.409640 3.4:-69091682 MS.gene008162:CDS
ATAACATATGTAGTATCATT+AGG 0.417501 3.4:+69090794 None:intergenic
GATATGTCAGTTGGCATAGA+TGG 0.418094 3.4:+69091707 None:intergenic
TGTATCGAACACCGATAAAA+CGG 0.428989 3.4:-69091162 MS.gene008162:CDS
ACATATGTTATTCTTGAAAG+TGG 0.434147 3.4:-69090782 MS.gene008162:CDS
AAAATTGATGAGTATTAACT+TGG 0.439582 3.4:-69091740 MS.gene008162:CDS
ACAAAGGTCTTGCTTGTGAA+TGG 0.464150 3.4:-69091460 MS.gene008162:CDS
CTCGTCACCGGTGGAACTCG+TGG 0.467504 3.4:-69092628 MS.gene008162:CDS
TTGAATGAGTGGAAGGAGAA+AGG 0.480371 3.4:-69092517 MS.gene008162:CDS
TCACTTCTTATGGTCATGCT+GGG 0.488997 3.4:+69091022 None:intergenic
TCTCTGACAAACGTAGGTTC+TGG 0.495804 3.4:-69091631 MS.gene008162:CDS
AACATTACATAATCGTTAAG+TGG 0.496146 3.4:+69091386 None:intergenic
CCTGCTGCTTCTTACATCAC+TGG 0.498085 3.4:-69091091 MS.gene008162:CDS
TGAGCTTAGGTAAACAATGT+TGG 0.501292 3.4:-69091811 MS.gene008162:intron
ACCGGTGGAACTCGTGGGAT+CGG 0.503309 3.4:-69092622 MS.gene008162:CDS
TTTCCAGATTCTTTAAGAAG+AGG 0.503369 3.4:+69091685 None:intergenic
GGATCAACTGCGTTGCGCCT+TGG 0.504412 3.4:-69091421 MS.gene008162:CDS
CTATAGTGTACACTTGTTCT+CGG 0.505035 3.4:-69092564 MS.gene008162:CDS
ACATGAAGTGTCTTCCTTGG+TGG 0.509451 3.4:-69091128 MS.gene008162:CDS
TTGAAAGTGGAAAGCTCAAA+GGG 0.515668 3.4:-69090769 MS.gene008162:CDS
ACCATATACGCAGCGTGTAA+AGG 0.519622 3.4:-69091607 MS.gene008162:intron
CTTGAAAGTGGAAAGCTCAA+AGG 0.520748 3.4:-69090770 MS.gene008162:CDS
AACACATGAAGTGTCTTCCT+TGG 0.529357 3.4:-69091131 MS.gene008162:CDS
TAAGAAGAGGATATGTCAGT+TGG 0.546406 3.4:+69091698 None:intergenic
CAAGTTATTTCTGTTGATGG+AGG 0.549415 3.4:-69091067 MS.gene008162:CDS
CAAAGGTCTTGCTTGTGAAT+GGG 0.550102 3.4:-69091459 MS.gene008162:CDS
ACCGATCCCACGAGTTCCAC+CGG 0.553414 3.4:+69092621 None:intergenic
GATGGAGGATTTACTGCGAA+TGG 0.556013 3.4:-69091052 MS.gene008162:CDS
GACTTCTTCTTCTCAAAGAG+AGG 0.564516 3.4:-69092464 MS.gene008162:CDS
AAGAGAGGAGCTTGTTCGAA+AGG 0.571197 3.4:-69092449 MS.gene008162:CDS
GGATTCACAGCTCTCGTCAC+CGG 0.571734 3.4:-69092640 MS.gene008162:CDS
AAGCTCAAGATGGTCCCTCA+AGG 0.573784 3.4:-69092662 MS.gene008162:CDS
AAGAAGCAGCAGGCAGACAA+AGG 0.575487 3.4:+69091101 None:intergenic
GAGAGCTGTGAATCCCTTGA+GGG 0.579284 3.4:+69092648 None:intergenic
CAGACAAAGGAAAGCCACCA+AGG 0.581621 3.4:+69091114 None:intergenic
AGAGGAGCTTGTTCGAAAGG+TGG 0.587374 3.4:-69092446 MS.gene008162:CDS
AGCTCAAGATGGTCCCTCAA+GGG 0.601552 3.4:-69092661 MS.gene008162:CDS
TATGATGAGATGCTTGATGA+AGG 0.602448 3.4:-69090824 MS.gene008162:CDS
CCAGTGATGTAAGAAGCAGC+AGG 0.610041 3.4:+69091091 None:intergenic
TCGTCACCGGTGGAACTCGT+GGG 0.613856 3.4:-69092627 MS.gene008162:CDS
GCAATCAATCAGCTGAACAA+AGG 0.614458 3.4:-69091476 MS.gene008162:CDS
TTCACAGCTCTCGTCACCGG+TGG 0.616296 3.4:-69092637 MS.gene008162:CDS
CGAGAGCTGTGAATCCCTTG+AGG 0.617629 3.4:+69092647 None:intergenic
ACAGTAGCAGAAGCTCAAGA+TGG 0.618803 3.4:-69092672 MS.gene008162:CDS
TGAATGAACGCTTGAATGAG+TGG 0.642583 3.4:-69092528 MS.gene008162:CDS
TGAACGCTTGAATGAGTGGA+AGG 0.643639 3.4:-69092524 MS.gene008162:CDS
CACTTGTTCTCGGAATGAAG+AGG 0.661115 3.4:-69092554 MS.gene008162:CDS
ACCAACAATTGAGTATACAA+CGG 0.674590 3.4:-69091773 MS.gene008162:CDS
GTTGCATCTCTGACAAACGT+AGG 0.677603 3.4:-69091637 MS.gene008162:CDS
ACAATGTTGGAACAAATGTG+AGG 0.690959 3.4:-69091798 MS.gene008162:CDS
GTTTGTCAGAGATGCAACAG+AGG 0.693930 3.4:+69091642 None:intergenic
GATCGGTCATGCTATCGTAG+AGG 0.705413 3.4:-69092605 MS.gene008162:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGATGAGTATTAACT+TGG - chr3.4:69091693-69091712 MS.gene008162:CDS 20.0%
!! AAGCATAAGAAAATCTTAAA+TGG + chr3.4:69091425-69091444 None:intergenic 20.0%
!! ACTTAATTAATCACTTCTTA+TGG + chr3.4:69092424-69092443 None:intergenic 20.0%
!! ACTTATTGTAGAAAATTTAG+TGG - chr3.4:69091167-69091186 MS.gene008162:CDS 20.0%
!! ATAACATATGTAGTATCATT+AGG + chr3.4:69092642-69092661 None:intergenic 20.0%
!! TCAGAAAGAAAAAATGATAA+GGG + chr3.4:69092103-69092122 None:intergenic 20.0%
!! TTCAGAAAGAAAAAATGATA+AGG + chr3.4:69092104-69092123 None:intergenic 20.0%
! AACATTACATAATCGTTAAG+TGG + chr3.4:69092050-69092069 None:intergenic 25.0%
! ACATATGTTATTCTTGAAAG+TGG - chr3.4:69092651-69092670 MS.gene008162:CDS 25.0%
! TCTAATATTCTTATGAGCTT+AGG - chr3.4:69091609-69091628 MS.gene008162:CDS 25.0%
! TTAAGAACATTGCATTACAT+AGG - chr3.4:69091286-69091305 MS.gene008162:intron 25.0%
! TTAGCATATAACTGTAAGAA+AGG + chr3.4:69092228-69092247 None:intergenic 25.0%
! TTCATGACTTATGTATAAGT+TGG - chr3.4:69092454-69092473 MS.gene008162:CDS 25.0%
!! GTGCTGATAATAATTTGATT+TGG - chr3.4:69092137-69092156 MS.gene008162:intron 25.0%
AACATTGCATTACATAGGTA+GGG - chr3.4:69091291-69091310 MS.gene008162:intron 30.0%
ACCAACAATTGAGTATACAA+CGG - chr3.4:69091660-69091679 MS.gene008162:CDS 30.0%
CTTCTTAAAGAATCTGGAAA+TGG - chr3.4:69091751-69091770 MS.gene008162:CDS 30.0%
GTATGCTTAAACATGATTGA+TGG - chr3.4:69091874-69091893 MS.gene008162:intron 30.0%
GTTTACACATGATTGGAATT+TGG + chr3.4:69091225-69091244 None:intergenic 30.0%
TATCCTCTTCTTAAAGAATC+TGG - chr3.4:69091745-69091764 MS.gene008162:CDS 30.0%
! ATGATGCAGAAATAGTCTTA+TGG + chr3.4:69092542-69092561 None:intergenic 30.0%
! TTTCCAGATTCTTTAAGAAG+AGG + chr3.4:69091751-69091770 None:intergenic 30.0%
!! GAAATAGTCTTATGGTACTA+TGG + chr3.4:69092534-69092553 None:intergenic 30.0%
AATGGGCAGAAGACAATATA+AGG - chr3.4:69091991-69092010 MS.gene008162:intron 35.0%
ACAATGTTGGAACAAATGTG+AGG - chr3.4:69091635-69091654 MS.gene008162:CDS 35.0%
ATGACTCGTTTACACATGAT+TGG + chr3.4:69091232-69091251 None:intergenic 35.0%
CTATAGTGTACACTTGTTCT+CGG - chr3.4:69090869-69090888 MS.gene008162:intron 35.0%
GAACATTGCATTACATAGGT+AGG - chr3.4:69091290-69091309 MS.gene008162:intron 35.0%
GACATGAATAAGTGGAAATC+CGG + chr3.4:69091332-69091351 None:intergenic 35.0%
TAAGAAGAGGATATGTCAGT+TGG + chr3.4:69091738-69091757 None:intergenic 35.0%
TATGATGAGATGCTTGATGA+AGG - chr3.4:69092609-69092628 MS.gene008162:CDS 35.0%
TCCGTTGTATACTCAATTGT+TGG + chr3.4:69091664-69091683 None:intergenic 35.0%
TGAGCTTAGGTAAACAATGT+TGG - chr3.4:69091622-69091641 MS.gene008162:CDS 35.0%
TGTATCGAACACCGATAAAA+CGG - chr3.4:69092271-69092290 MS.gene008162:intron 35.0%
TTGAAAGTGGAAAGCTCAAA+GGG - chr3.4:69092664-69092683 MS.gene008162:CDS 35.0%
! AAGGTGGCTTCTGATTTTAA+TGG - chr3.4:69091003-69091022 MS.gene008162:intron 35.0%
! CTTTTGATGCACTTTGTCTT+TGG - chr3.4:69091399-69091418 MS.gene008162:CDS 35.0%
! GAGAAAGGTTTTTCTGTTCA+TGG - chr3.4:69090931-69090950 MS.gene008162:intron 35.0%
! GTTTCTGCTATCCGTTTTAT+CGG + chr3.4:69092285-69092304 None:intergenic 35.0%
!! AAAATGATAAGGGCTCTGAA+TGG + chr3.4:69092093-69092112 None:intergenic 35.0%
!! CAAGTTATTTCTGTTGATGG+AGG - chr3.4:69092366-69092385 MS.gene008162:intron 35.0%
!! GGACAAGTTATTTCTGTTGA+TGG - chr3.4:69092363-69092382 MS.gene008162:intron 35.0%
!! GGCTCTGAATGGATAATTAA+AGG + chr3.4:69092082-69092101 None:intergenic 35.0%
ACAAAGGTCTTGCTTGTGAA+TGG - chr3.4:69091973-69091992 MS.gene008162:intron 40.0%
AGACCTTCTGATGATTGACA+TGG + chr3.4:69092582-69092601 None:intergenic 40.0%
ATCACTTCTTATGGTCATGC+TGG + chr3.4:69092415-69092434 None:intergenic 40.0%
CAAAGGTCTTGCTTGTGAAT+GGG - chr3.4:69091974-69091993 MS.gene008162:intron 40.0%
CATTACATAGGTAGGGACTA+GGG - chr3.4:69091298-69091317 MS.gene008162:intron 40.0%
CTTGAAAGTGGAAAGCTCAA+AGG - chr3.4:69092663-69092682 MS.gene008162:CDS 40.0%
GACTTCTTCTTCTCAAAGAG+AGG - chr3.4:69090969-69090988 MS.gene008162:intron 40.0%
GATATGTCAGTTGGCATAGA+TGG + chr3.4:69091729-69091748 None:intergenic 40.0%
GCAATCAATCAGCTGAACAA+AGG - chr3.4:69091957-69091976 MS.gene008162:intron 40.0%
TCACTTCTTATGGTCATGCT+GGG + chr3.4:69092414-69092433 None:intergenic 40.0%
TCTCCATGTCAATCATCAGA+AGG - chr3.4:69092576-69092595 MS.gene008162:CDS 40.0%
TGAATGAACGCTTGAATGAG+TGG - chr3.4:69090905-69090924 MS.gene008162:intron 40.0%
TGATGATTGACATGGAGACA+CGG + chr3.4:69092574-69092593 None:intergenic 40.0%
TGCGACAAGACATGAATAAG+TGG + chr3.4:69091340-69091359 None:intergenic 40.0%
TTGAATGAGTGGAAGGAGAA+AGG - chr3.4:69090916-69090935 MS.gene008162:intron 40.0%
! AACACATGAAGTGTCTTCCT+TGG - chr3.4:69092302-69092321 MS.gene008162:intron 40.0%
! AGTGGCGTTTTTGTATACCA+AGG + chr3.4:69092032-69092051 None:intergenic 40.0%
!! ATCGCATTTTCAAGCTTCTG+AGG + chr3.4:69091459-69091478 None:intergenic 40.0%
!! TCGCATTTTCAAGCTTCTGA+GGG + chr3.4:69091458-69091477 None:intergenic 40.0%
AAAGGGTCACATACTCTTGC+TGG - chr3.4:69092681-69092700 MS.gene008162:CDS 45.0%
ACAGTAGCAGAAGCTCAAGA+TGG - chr3.4:69090761-69090780 MS.gene008162:CDS 45.0%
ACCATATACGCAGCGTGTAA+AGG - chr3.4:69091826-69091845 MS.gene008162:intron 45.0%
ACCTTTACACGCTGCGTATA+TGG + chr3.4:69091830-69091849 None:intergenic 45.0%
CACTTGTTCTCGGAATGAAG+AGG - chr3.4:69090879-69090898 MS.gene008162:intron 45.0%
GATGATTGACATGGAGACAC+GGG + chr3.4:69092573-69092592 None:intergenic 45.0%
GATGGAGGATTTACTGCGAA+TGG - chr3.4:69092381-69092400 MS.gene008162:intron 45.0%
GCATTACATAGGTAGGGACT+AGG - chr3.4:69091297-69091316 MS.gene008162:intron 45.0%
GTTGCATCTCTGACAAACGT+AGG - chr3.4:69091796-69091815 MS.gene008162:CDS 45.0%
GTTTGTCAGAGATGCAACAG+AGG + chr3.4:69091794-69091813 None:intergenic 45.0%
TCTCTGACAAACGTAGGTTC+TGG - chr3.4:69091802-69091821 MS.gene008162:CDS 45.0%
TGAACGCTTGAATGAGTGGA+AGG - chr3.4:69090909-69090928 MS.gene008162:intron 45.0%
TGCAGCTGAAGAAAACAGCA+CGG + chr3.4:69091940-69091959 None:intergenic 45.0%
! AAGAGAGGAGCTTGTTCGAA+AGG - chr3.4:69090984-69091003 MS.gene008162:intron 45.0%
! ACATGAAGTGTCTTCCTTGG+TGG - chr3.4:69092305-69092324 MS.gene008162:intron 45.0%
!! GTAGAGGAACTTGCTGAGTT+TGG - chr3.4:69090844-69090863 MS.gene008162:intron 45.0%
AAGAAGCAGCAGGCAGACAA+AGG + chr3.4:69092335-69092354 None:intergenic 50.0%
AAGCTCAAGATGGTCCCTCA+AGG - chr3.4:69090771-69090790 MS.gene008162:CDS 50.0%
AGCTCAAGATGGTCCCTCAA+GGG - chr3.4:69090772-69090791 MS.gene008162:CDS 50.0%
CAGACAAAGGAAAGCCACCA+AGG + chr3.4:69092322-69092341 None:intergenic 50.0%
CCAGTGATGTAAGAAGCAGC+AGG + chr3.4:69092345-69092364 None:intergenic 50.0%
GAGAGCTGTGAATCCCTTGA+GGG + chr3.4:69090788-69090807 None:intergenic 50.0%
GATCGGTCATGCTATCGTAG+AGG - chr3.4:69090828-69090847 MS.gene008162:CDS 50.0%
TGAGCTGAAGTCATGCGTGA+CGG + chr3.4:69091565-69091584 None:intergenic 50.0%
! AGAGGAGCTTGTTCGAAAGG+TGG - chr3.4:69090987-69091006 MS.gene008162:intron 50.0%
! CCTGCTGCTTCTTACATCAC+TGG - chr3.4:69092342-69092361 MS.gene008162:intron 50.0%
CGAGAGCTGTGAATCCCTTG+AGG + chr3.4:69090789-69090808 None:intergenic 55.0%
GGATTCACAGCTCTCGTCAC+CGG - chr3.4:69090793-69090812 MS.gene008162:CDS 55.0%
! AGGGACTAGGGTTCTAACGC+CGG - chr3.4:69091310-69091329 MS.gene008162:intron 55.0%
ACCGATCCCACGAGTTCCAC+CGG + chr3.4:69090815-69090834 None:intergenic 60.0%
ACCGGTGGAACTCGTGGGAT+CGG - chr3.4:69090811-69090830 MS.gene008162:CDS 60.0%
GGATCAACTGCGTTGCGCCT+TGG - chr3.4:69092012-69092031 MS.gene008162:intron 60.0%
TCGTCACCGGTGGAACTCGT+GGG - chr3.4:69090806-69090825 MS.gene008162:CDS 60.0%
TTCACAGCTCTCGTCACCGG+TGG - chr3.4:69090796-69090815 MS.gene008162:CDS 60.0%
CTCGTCACCGGTGGAACTCG+TGG - chr3.4:69090805-69090824 MS.gene008162:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 69090745 69092710 69090745 ID=MS.gene008162
chr3.4 mRNA 69090745 69092710 69090745 ID=MS.gene008162.t1;Parent=MS.gene008162
chr3.4 exon 69092414 69092710 69092414 ID=MS.gene008162.t1.exon1;Parent=MS.gene008162.t1
chr3.4 CDS 69092414 69092710 69092414 ID=cds.MS.gene008162.t1;Parent=MS.gene008162.t1
chr3.4 exon 69091608 69091824 69091608 ID=MS.gene008162.t1.exon2;Parent=MS.gene008162.t1
chr3.4 CDS 69091608 69091824 69091608 ID=cds.MS.gene008162.t1;Parent=MS.gene008162.t1
chr3.4 exon 69091394 69091500 69091394 ID=MS.gene008162.t1.exon3;Parent=MS.gene008162.t1
chr3.4 CDS 69091394 69091500 69091394 ID=cds.MS.gene008162.t1;Parent=MS.gene008162.t1
chr3.4 exon 69091026 69091218 69091026 ID=MS.gene008162.t1.exon4;Parent=MS.gene008162.t1
chr3.4 CDS 69091026 69091218 69091026 ID=cds.MS.gene008162.t1;Parent=MS.gene008162.t1
chr3.4 exon 69090745 69090860 69090745 ID=MS.gene008162.t1.exon5;Parent=MS.gene008162.t1
chr3.4 CDS 69090745 69090860 69090745 ID=cds.MS.gene008162.t1;Parent=MS.gene008162.t1
Gene Sequence

>MS.gene008162

ATGTCAAAGCAAGAGAACAGTAGCAGAAGCTCAAGATGGTCCCTCAAGGGATTCACAGCTCTCGTCACCGGTGGAACTCGTGGGATCGGTCATGCTATCGTAGAGGAACTTGCTGAGTTTGGTGCTATAGTGTACACTTGTTCTCGGAATGAAGAGGAGCTGAATGAACGCTTGAATGAGTGGAAGGAGAAAGGTTTTTCTGTTCATGGATCAGTTTGTGATGTGACTTCTTCTTCTCAAAGAGAGGAGCTTGTTCGAAAGGTGGCTTCTGATTTTAATGGCAAGCTCAACATACTTGTGAGTTTTTTCTTTTCTATATATTTTGTTTTGCATTTCTATATTATGTTGATCATGTTTAAATAAGTCTAAATCAGCTTTTAATTCATGAAAGTGACTCATACAATACATATATTCGTTTTTCAACTTATTGTAGAAAATTTAGTGGAATTTTTTTTCAGAATATATTTTCATACACGTCCAAATTCCAATCATGTGTAAACGAGTCATTAAAAGACTCTTAATCGTGTCATGAACTCAGTTGTTAAGAACATTGCATTACATAGGTAGGGACTAGGGTTCTAACGCCGGATTTCCACTTATTCATGTCTTGTCGCACACATTTTAACTTGCAAGTATGCGTAACAAAATTGTAATCTTTTGATGCACTTTGTCTTTGGCCATTTAAGATTTTCTTATGCTTGCTTCAAATGCCCTCAGAAGCTTGAAAATGCGATCTCTATACATACTCTCTATTTGTATTTAACAATTTTAGCATAAAGCTTAAAACAAGAAATGTTCAAATTGCTAGACTTCTTTTCCGTCACGCATGACTTCAGCTCATACTAAATTGTGCTCATTTCATAATCTAATATTCTTATGAGCTTAGGTAAACAATGTTGGAACAAATGTGAGGAAACCAACAATTGAGTATACAACGGAAGATTATTCAAAATTGATGAGTATTAACTTGGATTCTGCATACCATCTATGCCAACTGACATATCCTCTTCTTAAAGAATCTGGAAATGGAAGCATTGTATTCAATTCCTCTGTTGCATCTCTGACAAACGTAGGTTCTGGAACCATATACGCAGCGTGTAAAGGTAACTCTATGTATCATTATGTCATTGTATGCTTAAACATGATTGATGGACACAAACTATTTTGACATTTACTAAAGAGATTCGATTCACCGTGCTGTTTTCTTCAGCTGCAATCAATCAGCTGAACAAAGGTCTTGCTTGTGAATGGGCAGAAGACAATATAAGGATCAACTGCGTTGCGCCTTGGTATACAAAAACGCCACTTAACGATTATGTAATGTTCTTTTCATACCTTTAATTATCCATTCAGAGCCCTTATCATTTTTTCTTTCTGAAGTTAGTTAAGTTTGTGCTGATAATAATTTGATTTGGATGAAAAAAGTGAGTAATCTTCAAATGACAATGTTATGTTCATATCTTGTGTTGCTAATTGTTTACCTTTCTTACAGTTATATGCTAACAAAGAGTTTGTGAATGAAGTACTGTATCGAACACCGATAAAACGGATAGCAGAAACACATGAAGTGTCTTCCTTGGTGGCTTTCCTTTGTCTGCCTGCTGCTTCTTACATCACTGGACAAGTTATTTCTGTTGATGGAGGATTTACTGCGAATGGATTTCAACCCAGCATGACCATAAGAAGTGATTAATTAAGTGTATGAATAATTCATGACTTATGTATAAGTTGGTTTGAAATTTTATTTTAATAAGTCTCTCAAAATAAAGCTTGTTTTATTGTAAGACCATAGTACCATAAGACTATTTCTGCATCATATCATAATCCCGTGTCTCCATGTCAATCATCAGAAGGTCTATTTCTGTATGATGAGATGCTTGATGAAGGTCTTGTACCTAATGATACTACATATGTTATTCTTGAAAGTGGAAAGCTCAAAGGGTCACATACTCTTGCTGGAGCTTAA
Protein sequence

>MS.gene008162.t1

MSKQENSSRSSRWSLKGFTALVTGGTRGIGHAIVEELAEFGAIVYTCSRNEEELNERLNEWKEKGFSVHGSVCDVTSSSQREELVRKVASDFNGKLNILVNNVGTNVRKPTIEYTTEDYSKLMSINLDSAYHLCQLTYPLLKESGNGSIVFNSSVASLTNVGSGTIYAACKAAINQLNKGLACEWAEDNIRINCVAPWYTKTPLNDYLYANKEFVNEVLYRTPIKRIAETHEVSSLVAFLCLPAASYITGQVISVDGGFTANGFQPSMTIRKGLFLYDEMLDEGLVPNDTTYVILESGKLKGSHTLAGA