AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63484


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63484.t1 MTR_3g068085 96.310 271 10 0 1 271 1 271 0.0 522
MS.gene63484.t1 MTR_3g068070 88.636 264 30 0 1 264 1 264 2.13e-176 487
MS.gene63484.t1 MTR_3g068065 85.547 256 37 0 15 270 17 272 7.64e-166 460
MS.gene63484.t1 MTR_3g068155 76.692 266 62 0 6 271 10 275 1.76e-155 434
MS.gene63484.t1 MTR_3g068175 73.626 273 70 1 1 271 1 273 2.71e-148 416
MS.gene63484.t1 MTR_3g068175 72.563 277 70 2 1 271 1 277 4.14e-146 410
MS.gene63484.t1 MTR_4g064883 61.719 256 98 0 12 267 11 266 1.23e-124 355
MS.gene63484.t1 MTR_4g064887 60.305 262 104 0 1 262 1 262 1.39e-120 345
MS.gene63484.t1 MTR_7g063320 60.311 257 98 1 9 261 9 265 1.59e-112 325
MS.gene63484.t1 MTR_7g063270 60.853 258 98 1 6 260 7 264 2.18e-110 319
MS.gene63484.t1 MTR_7g063390 59.615 260 101 2 6 261 7 266 6.52e-110 318
MS.gene63484.t1 MTR_7g063360 60.385 260 99 2 6 261 7 266 9.81e-109 315
MS.gene63484.t1 MTR_7g063330 57.795 263 108 1 1 260 1 263 2.64e-108 314
MS.gene63484.t1 MTR_7g063260 58.687 259 103 1 6 260 7 265 1.05e-105 308
MS.gene63484.t1 MTR_4g064887 60.766 209 82 0 1 209 1 209 9.87e-94 276
MS.gene63484.t1 MTR_4g064883 62.626 198 74 0 12 209 11 208 6.46e-93 273
MS.gene63484.t1 MTR_7g063270 50.775 258 75 3 6 260 7 215 5.92e-81 243
MS.gene63484.t1 MTR_4g132850 32.114 246 162 4 15 259 7 248 1.79e-32 120
MS.gene63484.t1 MTR_3g085740 30.488 246 160 6 21 261 81 320 2.07e-30 116
MS.gene63484.t1 MTR_7g094510 32.400 250 153 9 20 259 11 254 1.13e-28 110
MS.gene63484.t1 MTR_7g094520 33.068 251 150 9 20 259 16 259 4.63e-28 108
MS.gene63484.t1 MTR_4g058810 30.651 261 168 9 14 264 10 267 3.72e-27 106
MS.gene63484.t1 MTR_7g071680 31.560 282 155 8 8 260 22 294 6.18e-27 106
MS.gene63484.t1 MTR_4g058840 29.730 259 171 7 15 264 11 267 3.81e-26 103
MS.gene63484.t1 MTR_4g058820 29.730 259 171 7 15 264 11 267 3.81e-26 103
MS.gene63484.t1 MTR_1196s0010 32.510 243 153 6 20 259 279 513 5.01e-25 103
MS.gene63484.t1 MTR_7g083870 30.216 278 172 8 1 260 14 287 6.03e-23 95.9
MS.gene63484.t1 MTR_4g052350 30.502 259 163 10 15 264 14 264 3.57e-22 93.2
MS.gene63484.t1 MTR_4g131740 31.154 260 161 8 15 262 40 293 9.95e-22 92.4
MS.gene63484.t1 MTR_4g052320 29.020 255 173 7 15 264 8 259 1.71e-20 88.6
MS.gene63484.t1 MTR_7g107670 28.016 257 159 7 20 260 38 284 3.61e-20 88.2
MS.gene63484.t1 MTR_3g020670 31.136 273 165 11 3 260 6 270 6.18e-20 87.0
MS.gene63484.t1 MTR_8g442750 28.125 256 169 6 15 259 14 265 2.75e-19 85.9
MS.gene63484.t1 MTR_7g113650 30.739 257 165 8 15 262 40 292 3.05e-19 85.5
MS.gene63484.t1 MTR_6g023990 29.323 266 173 8 4 259 2 262 3.97e-19 84.7
MS.gene63484.t1 MTR_3g068075 82.000 50 8 1 123 171 1 50 4.12e-19 80.1
MS.gene63484.t1 MTR_6g023590 27.925 265 177 7 4 259 2 261 6.81e-19 84.0
MS.gene63484.t1 MTR_4g058830 34.146 164 101 6 106 264 52 213 8.53e-19 82.8
MS.gene63484.t1 MTR_1g051165 26.172 256 175 8 21 263 20 274 1.11e-18 84.0
MS.gene63484.t1 MTR_4g052300 28.235 255 174 8 15 264 8 258 1.44e-18 83.2
MS.gene63484.t1 MTR_4g052340 27.652 264 164 7 15 264 14 264 2.09e-18 82.8
MS.gene63484.t1 MTR_1g068955 30.350 257 158 9 20 263 19 267 4.04e-18 82.4
MS.gene63484.t1 MTR_4g078630 29.304 273 169 10 3 260 8 271 1.09e-17 81.3
MS.gene63484.t1 MTR_1g082760 27.907 258 173 7 15 263 40 293 1.22e-17 81.3
MS.gene63484.t1 MTR_7g105460 27.338 278 180 10 4 270 2 268 7.31e-17 78.6
MS.gene63484.t1 MTR_6g023600 28.302 265 176 7 4 259 2 261 1.33e-16 77.8
MS.gene63484.t1 MTR_7g105590 30.645 186 122 5 15 197 8 189 1.70e-16 76.3
MS.gene63484.t1 MTR_5g098650 68.627 51 16 0 221 271 124 174 2.04e-16 75.5
MS.gene63484.t1 MTR_6g023950 27.376 263 181 7 4 259 2 261 9.41e-16 75.5
MS.gene63484.t1 MTR_6g023610 27.473 273 180 9 4 265 2 267 2.92e-15 73.9
MS.gene63484.t1 MTR_7g105580 27.059 255 152 8 15 260 8 237 4.17e-15 73.6
MS.gene63484.t1 MTR_8g044240 27.350 234 142 8 15 233 69 289 6.57e-15 73.9
MS.gene63484.t1 MTR_7g110140 27.863 262 181 7 11 267 2 260 7.04e-15 72.8
MS.gene63484.t1 MTR_8g089575 30.348 201 131 5 20 213 50 248 8.99e-15 73.2
MS.gene63484.t1 MTR_2g090165 26.692 266 184 7 11 269 2 263 1.31e-14 72.0
MS.gene63484.t1 MTR_4g134660 31.138 167 112 2 21 184 12 178 2.21e-14 71.2
MS.gene63484.t1 MTR_6g023600 27.925 265 171 7 4 259 2 255 3.71e-14 70.9
MS.gene63484.t1 MTR_1579s0020 35.227 88 56 1 181 268 1 87 4.96e-14 66.6
MS.gene63484.t1 MTR_7g110130 26.255 259 178 7 11 261 2 255 8.81e-14 69.7
MS.gene63484.t1 MTR_7g110160 27.626 257 158 7 11 261 2 236 5.51e-13 67.4
MS.gene63484.t1 MTR_6g041980 34.932 146 83 5 15 154 64 203 8.46e-13 67.0
MS.gene63484.t1 MTR_6g041980 30.622 209 121 6 15 205 64 266 1.52e-12 67.0
MS.gene63484.t1 MTR_6g035395 27.059 255 165 7 12 261 2 240 3.93e-12 65.1
MS.gene63484.t1 MTR_6g088500 23.643 258 158 8 19 243 182 433 9.99e-12 65.1
MS.gene63484.t1 MTR_3g086210 27.368 190 133 3 20 204 56 245 1.05e-11 64.3
MS.gene63484.t1 MTR_3g113870 26.667 180 126 4 28 205 34 209 1.46e-11 63.2
MS.gene63484.t1 MTR_7g105570 28.191 188 116 7 94 270 46 225 1.72e-11 62.8
MS.gene63484.t1 MTR_1275s0010 25.200 250 146 6 10 250 153 370 1.81e-11 64.3
MS.gene63484.t1 MTR_3g098470 33.784 148 95 3 8 154 25 170 2.28e-11 63.5
MS.gene63484.t1 MTR_7g080410 26.111 180 129 3 22 197 45 224 2.60e-11 63.2
MS.gene63484.t1 MTR_7g080410 26.111 180 129 3 22 197 45 224 3.12e-11 62.8
MS.gene63484.t1 MTR_6g088500 25.000 212 128 6 19 205 182 387 5.83e-11 62.4
MS.gene63484.t1 MTR_3g087850 26.761 213 142 4 21 232 32 231 7.93e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63484.t1 AT5G06060 69.380 258 79 0 12 269 6 263 6.58e-138 389
MS.gene63484.t1 AT2G29290 60.311 257 100 1 12 266 4 260 1.24e-118 340
MS.gene63484.t1 AT2G29260 61.176 255 99 0 12 266 65 319 3.18e-117 339
MS.gene63484.t1 AT2G29150 60.000 265 104 2 1 264 1 264 4.94e-115 331
MS.gene63484.t1 AT2G29360 59.004 261 107 0 4 264 5 265 7.27e-115 331
MS.gene63484.t1 AT1G07440 59.701 268 102 3 1 266 1 264 1.21e-114 330
MS.gene63484.t1 AT2G29350 59.091 264 107 1 1 264 1 263 7.36e-114 328
MS.gene63484.t1 AT1G07450 59.289 253 102 1 12 264 5 256 7.86e-111 320
MS.gene63484.t1 AT2G29330 60.465 258 98 3 12 266 4 260 4.62e-110 318
MS.gene63484.t1 AT2G29340 57.143 259 109 1 12 268 4 262 5.42e-109 316
MS.gene63484.t1 AT2G29340 57.588 257 107 1 12 266 4 260 2.18e-108 316
MS.gene63484.t1 AT2G30670 58.498 253 105 0 12 264 4 256 7.15e-108 313
MS.gene63484.t1 AT2G29370 54.789 261 118 0 4 264 5 265 2.03e-107 312
MS.gene63484.t1 AT2G29320 58.366 257 104 2 13 266 11 267 3.54e-105 306
MS.gene63484.t1 AT2G29310 56.917 253 109 0 12 264 4 256 8.99e-105 305
MS.gene63484.t1 AT2G29290 58.403 238 97 1 31 266 6 243 1.01e-104 304
MS.gene63484.t1 AT2G29300 56.589 258 109 2 12 266 4 261 8.95e-103 300
MS.gene63484.t1 AT2G29300 56.400 250 108 1 12 260 4 253 5.59e-99 291
MS.gene63484.t1 AT2G29350 59.111 225 91 1 40 264 2 225 1.08e-96 283
MS.gene63484.t1 AT2G29320 57.741 239 98 2 31 266 11 249 4.41e-95 280
MS.gene63484.t1 AT2G29310 55.983 234 103 0 31 264 21 254 3.07e-93 276
MS.gene63484.t1 AT2G29350 60.294 204 81 0 1 204 1 204 8.11e-89 263
MS.gene63484.t1 AT2G29340 56.061 198 87 0 12 209 4 201 5.83e-80 240
MS.gene63484.t1 AT2G29340 56.061 198 87 0 12 209 4 201 5.83e-80 240
MS.gene63484.t1 AT2G29310 56.061 198 87 0 12 209 4 201 5.69e-78 235
MS.gene63484.t1 AT2G29320 58.639 191 78 1 13 202 11 201 3.56e-77 233
MS.gene63484.t1 AT1G07440 58.140 172 69 1 1 172 1 169 9.38e-68 208
MS.gene63484.t1 AT2G29310 54.749 179 81 0 31 209 21 199 3.74e-66 205
MS.gene63484.t1 AT2G29170 57.843 102 42 1 1 101 1 102 8.85e-35 121
MS.gene63484.t1 AT4G05530 32.520 246 161 5 15 259 9 250 1.06e-32 120
MS.gene63484.t1 AT5G18210 32.950 261 160 7 10 259 3 259 3.62e-31 117
MS.gene63484.t1 AT3G03980 30.855 269 167 7 6 259 5 269 9.89e-30 113
MS.gene63484.t1 AT1G24360 30.364 247 159 7 21 261 80 319 6.36e-29 112
MS.gene63484.t1 AT4G13180 32.819 259 164 8 10 261 8 263 1.02e-28 110
MS.gene63484.t1 AT5G18210 32.234 273 156 9 10 271 3 257 2.61e-27 107
MS.gene63484.t1 AT3G46170 29.457 258 171 7 15 263 26 281 3.55e-25 101
MS.gene63484.t1 AT3G55310 30.116 259 168 9 15 263 17 272 1.14e-24 100
MS.gene63484.t1 AT1G54870 33.852 257 157 8 15 262 84 336 1.56e-24 100
MS.gene63484.t1 AT1G54870 33.852 257 157 8 15 262 82 334 1.78e-24 100
MS.gene63484.t1 AT3G55290 29.344 259 170 9 15 263 18 273 4.67e-24 98.6
MS.gene63484.t1 AT3G55290 29.344 259 170 9 15 263 17 272 5.09e-24 98.2
MS.gene63484.t1 AT1G63380 28.571 259 173 8 15 263 15 271 1.11e-23 97.4
MS.gene63484.t1 AT1G63380 28.571 259 173 8 15 263 17 273 1.15e-23 97.4
MS.gene63484.t1 AT1G63380 28.571 259 173 8 15 263 19 275 1.18e-23 97.4
MS.gene63484.t1 AT1G63380 28.571 259 173 8 15 263 22 278 1.70e-23 97.1
MS.gene63484.t1 AT1G62610 28.185 259 174 8 15 263 15 271 1.83e-23 96.7
MS.gene63484.t1 AT1G62610 28.185 259 174 8 15 263 14 270 1.85e-23 96.7
MS.gene63484.t1 AT1G62610 28.185 259 174 8 15 263 13 269 1.91e-23 96.7
MS.gene63484.t1 AT1G62610 28.185 259 174 8 15 263 19 275 1.92e-23 96.7
MS.gene63484.t1 AT3G05260 33.208 265 165 7 6 262 28 288 2.82e-23 96.7
MS.gene63484.t1 AT2G17845 28.897 263 171 9 15 264 47 306 1.05e-22 95.5
MS.gene63484.t1 AT3G04000 31.734 271 165 8 4 258 3 269 1.05e-22 94.7
MS.gene63484.t1 AT3G26760 29.323 266 170 7 8 260 30 290 2.20e-21 91.7
MS.gene63484.t1 AT3G51680 33.166 199 123 5 15 205 32 228 3.56e-21 90.9
MS.gene63484.t1 AT2G47120 28.947 266 169 13 11 267 2 256 1.10e-19 86.3
MS.gene63484.t1 AT2G47120 29.008 262 166 13 15 267 7 257 1.81e-19 85.5
MS.gene63484.t1 AT3G12800 26.070 257 174 7 15 259 10 262 2.48e-19 85.9
MS.gene63484.t1 AT4G03140 26.562 256 174 6 15 260 78 329 1.55e-18 84.3
MS.gene63484.t1 AT1G52340 29.278 263 164 8 15 260 18 275 1.63e-18 83.6
MS.gene63484.t1 AT2G47130 29.457 258 169 9 11 261 2 253 1.30e-17 80.5
MS.gene63484.t1 AT5G04900 29.778 225 141 8 18 233 80 296 2.17e-16 78.2
MS.gene63484.t1 AT1G10310 33.939 165 106 3 21 184 21 183 5.72e-15 72.8
MS.gene63484.t1 AT4G13250 25.581 258 153 8 19 243 163 414 5.65e-14 72.0
MS.gene63484.t1 AT3G42960 28.794 257 159 9 20 260 13 261 6.79e-14 70.5
MS.gene63484.t1 AT2G47140 27.843 255 170 8 15 261 6 254 1.02e-13 69.7
MS.gene63484.t1 AT5G10050 26.291 213 143 4 21 232 11 210 1.46e-13 69.3
MS.gene63484.t1 AT5G65205 30.000 180 115 5 21 197 12 183 1.99e-13 69.3
MS.gene63484.t1 AT3G26770 25.940 266 175 7 15 264 41 300 5.58e-13 68.2
MS.gene63484.t1 AT4G09750 30.622 209 121 6 15 205 41 243 1.48e-12 67.0
MS.gene63484.t1 AT3G06060 25.743 202 143 2 9 207 31 228 4.68e-12 65.5
MS.gene63484.t1 AT3G06060 25.743 202 143 2 9 207 48 245 5.97e-12 65.5
MS.gene63484.t1 AT3G47350 26.540 211 140 7 20 221 49 253 2.72e-11 63.2
MS.gene63484.t1 AT3G47350 26.540 211 140 7 20 221 49 253 3.52e-11 62.8
MS.gene63484.t1 AT3G03330 26.904 197 139 3 6 197 32 228 3.66e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGTTTACACTTGTTCT+AGG 0.259656 3.1:-56380057 MS.gene63484:CDS
CATCCTCTGCTTAAAGAATC+TGG 0.325649 3.1:-56379579 MS.gene63484:CDS
AATGGGCGAAAGACAATATA+AGG 0.356013 3.1:-56379351 MS.gene63484:CDS
GGACAGATTGTTTCTGTTGA+TGG 0.357615 3.1:-56377738 MS.gene63484:CDS
GGTTCTGCTATACGCTTTAT+CGG 0.380929 3.1:+56377819 None:intergenic
GTTGAAGAACTCGCTGAGTT+TGG 0.389672 3.1:-56380082 MS.gene63484:CDS
CTGCTTAAAGAATCTGGAAA+TGG 0.406314 3.1:-56379573 MS.gene63484:CDS
CATCACTTTCGAATAATCTT+CGG 0.431430 3.1:+56379644 None:intergenic
TCGGCTGTATACTCAATTGT+TGG 0.433889 3.1:+56379663 None:intergenic
CGAGAGCGTTGAATCCTTTG+AGG 0.442296 3.1:+56380140 None:intergenic
ACCGGCGGAACGCGTGGAAT+CGG 0.443421 3.1:-56380115 MS.gene63484:CDS
GATGGAGGATTTACTGTGAA+TGG 0.451398 3.1:-56377720 MS.gene63484:CDS
TCTCTCACAAGCATAGGTTC+TGG 0.458121 3.1:-56379522 MS.gene63484:CDS
TGCATACCATCTATGTCAAT+TGG 0.460251 3.1:-56379604 MS.gene63484:CDS
TGAAATTAGGTGAACAATGC+TGG 0.465684 3.1:-56379702 MS.gene63484:intron
AGCGTTTATTCAGCTCCTCT+TGG 0.468728 3.1:+56380032 None:intergenic
GAAAGTGATGACTACTAACT+TGG 0.480086 3.1:-56379631 MS.gene63484:CDS
CTCGTCACCGGCGGAACGCG+TGG 0.489333 3.1:-56380121 MS.gene63484:CDS
TCCGATTCCACGCGTTCCGC+CGG 0.497124 3.1:+56380114 None:intergenic
GTATTAGGTAATCCTCATGC+TGG 0.506409 3.1:+56377689 None:intergenic
CCAGCTGCTTCCTACATCAC+TGG 0.520639 3.1:-56377759 MS.gene63484:CDS
GGATTCAACGCTCTCGTCAC+CGG 0.529505 3.1:-56380133 MS.gene63484:CDS
ACCACATGAAGTGTCTTCCT+TGG 0.531653 3.1:-56377799 MS.gene63484:CDS
AACGTGGCTTCTTCTTTCAA+CGG 0.542163 3.1:-56379923 MS.gene63484:CDS
TGATGTAGGAAGCAGCTGGC+AGG 0.543439 3.1:+56377763 None:intergenic
TTAAACGAGTGGAAAGAGAA+AGG 0.546612 3.1:-56380010 MS.gene63484:CDS
AGCGTCTATGCAGCAAGTAA+AGG 0.551642 3.1:-56379498 MS.gene63484:intron
AACAATCTGTCCAGTGATGT+AGG 0.551671 3.1:+56377749 None:intergenic
GATGTACCAATTGACATAGA+TGG 0.556385 3.1:+56379598 None:intergenic
TTTCCAGATTCTTTAAGCAG+AGG 0.567292 3.1:+56379576 None:intergenic
TATTAGGTAATCCTCATGCT+GGG 0.570838 3.1:+56377690 None:intergenic
CAGATTGTTTCTGTTGATGG+AGG 0.575569 3.1:-56377735 MS.gene63484:CDS
GAGAGCGTTGAATCCTTTGA+GGG 0.575644 3.1:+56380141 None:intergenic
AGCTCAAGATGGTCCCTCAA+AGG 0.580641 3.1:-56380154 MS.gene63484:CDS
AGGAAGCAGCTGGCAGGCAA+AGG 0.580855 3.1:+56377769 None:intergenic
CCAGTGATGTAGGAAGCAGC+TGG 0.595402 3.1:+56377759 None:intergenic
ATCATCTTCTTCTCAAAGAG+AGG 0.596910 3.1:-56379957 MS.gene63484:CDS
AGCATTACATGTTCCACAAG+TGG 0.604747 3.1:+56379295 None:intergenic
GTTGCATCTCTCACAAGCAT+AGG 0.610660 3.1:-56379528 MS.gene63484:CDS
GCAGTAGCAGAAGCTCAAGA+TGG 0.612756 3.1:-56380165 MS.gene63484:CDS
ATGGATTTCAACCCAGCATG+AGG 0.617391 3.1:-56377701 MS.gene63484:CDS
TGAATAAACGCTTAAACGAG+TGG 0.622975 3.1:-56380021 MS.gene63484:CDS
GGAGCAACTGCGTTGCACCC+TGG 0.632107 3.1:-56379330 MS.gene63484:CDS
TTCAACGCTCTCGTCACCGG+CGG 0.643369 3.1:-56380130 MS.gene63484:CDS
GTATACGAAAACACCACTTG+TGG 0.645433 3.1:-56379308 MS.gene63484:CDS
AGAGGAGCTTATTCGAAACG+TGG 0.683344 3.1:-56379939 MS.gene63484:CDS
CACTTGTTCTAGGAACCAAG+AGG 0.692789 3.1:-56380047 MS.gene63484:CDS
ACCAAGGAAGACACTTCATG+TGG 0.707139 3.1:+56377798 None:intergenic
CAGGCAAAGGAAAGTCACCA+AGG 0.712267 3.1:+56377782 None:intergenic
CCTAGAACAAGTGTAAACTG+TGG 0.737540 3.1:+56380057 None:intergenic
ACAATGCTGGAACAAATGTG+AGG 0.761871 3.1:-56379689 MS.gene63484:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAGTATTAATCTATATA+TGG - chr3.1:56379938-56379957 MS.gene63484:CDS 15.0%
!! CAAAAGAAAATATATAGAAA+AGG + chr3.1:56378002-56378021 None:intergenic 15.0%
!!! TATTCTTCTATTTTGTTATT+AGG - chr3.1:56378730-56378749 MS.gene63484:intron 15.0%
!!! TTTGTAATCATGATTTTATT+TGG - chr3.1:56378663-56378682 MS.gene63484:intron 15.0%
!! AATTCTTTAGATAATTGAAC+AGG - chr3.1:56378873-56378892 MS.gene63484:intron 20.0%
!! ATCCATTATATTTAAGCAAA+AGG + chr3.1:56378431-56378450 None:intergenic 20.0%
!! TAGAACCAAAAAGAATAAAT+TGG - chr3.1:56379141-56379160 MS.gene63484:intron 20.0%
!!! AACCTTTTGCTTAAATATAA+TGG - chr3.1:56378426-56378445 MS.gene63484:intron 20.0%
!!! AGTAACCAATTTATTCTTTT+TGG + chr3.1:56379149-56379168 None:intergenic 20.0%
!!! TTTTGCTTAAATATAATGGA+TGG - chr3.1:56378430-56378449 MS.gene63484:intron 20.0%
! AAAAAATCTTGCTTGTGAAT+GGG - chr3.1:56378505-56378524 MS.gene63484:intron 25.0%
! ATCAAAATTGCTTGCATATT+TGG - chr3.1:56378899-56378918 MS.gene63484:intron 25.0%
! ATGTATATGATACACAATTG+TGG - chr3.1:56379476-56379495 MS.gene63484:intron 25.0%
! ATTCATTTAGTATTGCATAC+AGG - chr3.1:56379374-56379393 MS.gene63484:CDS 25.0%
! ATTGAAGATATATCCAATGT+CGG + chr3.1:56378095-56378114 None:intergenic 25.0%
! CAATGTAATTACTTCCATAA+AGG - chr3.1:56379039-56379058 MS.gene63484:intron 25.0%
! CATACGAATAAGAAATGAAT+TGG - chr3.1:56379682-56379701 MS.gene63484:CDS 25.0%
! TAAAAAAAATGACAAAGCCA+TGG + chr3.1:56378628-56378647 None:intergenic 25.0%
! TACTCTTATCACAAGTTTAA+TGG - chr3.1:56378968-56378987 MS.gene63484:intron 25.0%
! TATGATGTTCTTGTGAAATT+AGG - chr3.1:56378158-56378177 MS.gene63484:intron 25.0%
! TCAAAATTGCTTGCATATTT+GGG - chr3.1:56378900-56378919 MS.gene63484:intron 25.0%
! TGATTATCAAATGACCTTTA+TGG + chr3.1:56379056-56379075 None:intergenic 25.0%
! TTCATTTAGTATTGCATACA+GGG - chr3.1:56379375-56379394 MS.gene63484:CDS 25.0%
!! GACATACTAAAACATGATTT+TGG + chr3.1:56379536-56379555 None:intergenic 25.0%
!!! ACATTCATACTCATTTTTGT+AGG - chr3.1:56378792-56378811 MS.gene63484:intron 25.0%
AATTCACAATATTTGCACCT+AGG - chr3.1:56379100-56379119 MS.gene63484:intron 30.0%
ACCTTCAATTATTCATTCCA+TGG - chr3.1:56378608-56378627 MS.gene63484:intron 30.0%
AGTCCTCAACTATAAAAGAT+TGG + chr3.1:56379558-56379577 None:intergenic 30.0%
ATAGTTGAGGACTGTATATT+TGG - chr3.1:56379565-56379584 MS.gene63484:CDS 30.0%
ATTAATACTACATGAGCACA+CGG + chr3.1:56379931-56379950 None:intergenic 30.0%
ATTCACAATATTTGCACCTA+GGG - chr3.1:56379101-56379120 MS.gene63484:intron 30.0%
ATTGGTCATTGTTTAATCAG+GGG - chr3.1:56378700-56378719 MS.gene63484:intron 30.0%
ATTGTTTAATCAGGGGAATA+TGG - chr3.1:56378707-56378726 MS.gene63484:intron 30.0%
CAAAAAATCTTGCTTGTGAA+TGG - chr3.1:56378504-56378523 MS.gene63484:intron 30.0%
CATCACTTTCGAATAATCTT+CGG + chr3.1:56378232-56378251 None:intergenic 30.0%
TTAAACAATGACCAATCAGT+CGG + chr3.1:56378696-56378715 None:intergenic 30.0%
! ATATCTTCAATCAGAAGTGT+CGG - chr3.1:56378104-56378123 MS.gene63484:intron 30.0%
! GAGAAAGGTTTTTCTGTTTA+TGG - chr3.1:56377878-56377897 MS.gene63484:intron 30.0%
! GATTGGTCATTGTTTAATCA+GGG - chr3.1:56378699-56378718 MS.gene63484:intron 30.0%
! TGATTGGTCATTGTTTAATC+AGG - chr3.1:56378698-56378717 MS.gene63484:intron 30.0%
! TGTCCAATCTTTTATAGTTG+AGG - chr3.1:56379552-56379571 MS.gene63484:CDS 30.0%
! TTAATGGTTTTCCATGTTGA+CGG - chr3.1:56378984-56379003 MS.gene63484:intron 30.0%
!! AAGAAATGAATTGGCTTTGA+GGG - chr3.1:56379691-56379710 MS.gene63484:CDS 30.0%
!! TAAGAAATGAATTGGCTTTG+AGG - chr3.1:56379690-56379709 MS.gene63484:CDS 30.0%
!!! ACTTTTTTGTTAAGACGCAT+GGG - chr3.1:56379734-56379753 MS.gene63484:intron 30.0%
!!! TTTTGGTTCTAACTGACAAA+TGG + chr3.1:56379132-56379151 None:intergenic 30.0%
AATGGGCGAAAGACAATATA+AGG - chr3.1:56378522-56378541 MS.gene63484:intron 35.0%
AATTGCTTGCATATTTGGGA+TGG - chr3.1:56378904-56378923 MS.gene63484:intron 35.0%
ACATACGTGAATCAAACAGA+AGG + chr3.1:56379460-56379479 None:intergenic 35.0%
ATCATCTTCTTCTCAAAGAG+AGG - chr3.1:56377916-56377935 MS.gene63484:intron 35.0%
ATCCCTTCACAAATTGTCTA+TGG - chr3.1:56379275-56379294 MS.gene63484:intron 35.0%
CTGCTTAAAGAATCTGGAAA+TGG - chr3.1:56378300-56378319 MS.gene63484:intron 35.0%
GAAAGTGATGACTACTAACT+TGG - chr3.1:56378242-56378261 MS.gene63484:intron 35.0%
GAGGACTGTATATTTGGATA+TGG - chr3.1:56379571-56379590 MS.gene63484:CDS 35.0%
GATGTACCAATTGACATAGA+TGG + chr3.1:56378278-56378297 None:intergenic 35.0%
GCCATGGAATGAATAATTGA+AGG + chr3.1:56378612-56378631 None:intergenic 35.0%
TAATCGTCAGTGTTGTCAAA+TGG + chr3.1:56379340-56379359 None:intergenic 35.0%
TGAAATTAGGTGAACAATGC+TGG - chr3.1:56378171-56378190 MS.gene63484:intron 35.0%
TGAATAAACGCTTAAACGAG+TGG - chr3.1:56377852-56377871 MS.gene63484:CDS 35.0%
TGCATACCATCTATGTCAAT+TGG - chr3.1:56378269-56378288 MS.gene63484:intron 35.0%
TTAAACGAGTGGAAAGAGAA+AGG - chr3.1:56377863-56377882 MS.gene63484:CDS 35.0%
TTGGTTTATCTGTGTATGGA+GGG - chr3.1:56379840-56379859 MS.gene63484:intron 35.0%
TTTCCAGATTCTTTAAGCAG+AGG + chr3.1:56378300-56378319 None:intergenic 35.0%
! GATACATTTTTCCGTCAACA+TGG + chr3.1:56378998-56379017 None:intergenic 35.0%
! TGGCTCTTTAACATTTTTCC+TGG - chr3.1:56379759-56379778 MS.gene63484:intron 35.0%
!! ATGATTTTGGCATCTTCACA+TGG + chr3.1:56379523-56379542 None:intergenic 35.0%
!!! GACTTTTTTGTTAAGACGCA+TGG - chr3.1:56379733-56379752 MS.gene63484:intron 35.0%
AACAATCTGTCCAGTGATGT+AGG + chr3.1:56380127-56380146 None:intergenic 40.0%
AACAGAAGGCAGTGGAATTA+TGG + chr3.1:56379446-56379465 None:intergenic 40.0%
AACGTGGCTTCTTCTTTCAA+CGG - chr3.1:56377950-56377969 MS.gene63484:intron 40.0%
ACAATGCTGGAACAAATGTG+AGG - chr3.1:56378184-56378203 MS.gene63484:intron 40.0%
ACAGTTGTAGCAAGTGATTC+TGG - chr3.1:56379626-56379645 MS.gene63484:CDS 40.0%
AGCATTACATGTTCCACAAG+TGG + chr3.1:56378581-56378600 None:intergenic 40.0%
CACATGGATCAAGGTAACAT+TGG + chr3.1:56379507-56379526 None:intergenic 40.0%
CAGTTGTAGCAAGTGATTCT+GGG - chr3.1:56379627-56379646 MS.gene63484:CDS 40.0%
CATCCTCTGCTTAAAGAATC+TGG - chr3.1:56378294-56378313 MS.gene63484:intron 40.0%
CCACAGTTTACACTTGTTCT+AGG - chr3.1:56377816-56377835 MS.gene63484:CDS 40.0%
CCTAGAACAAGTGTAAACTG+TGG + chr3.1:56377819-56377838 None:intergenic 40.0%
CCTTCACAAATTGTCTATGG+CGG - chr3.1:56379278-56379297 MS.gene63484:intron 40.0%
CGCCATAGACAATTTGTGAA+GGG + chr3.1:56379280-56379299 None:intergenic 40.0%
GATGGAGGATTTACTGTGAA+TGG - chr3.1:56380153-56380172 MS.gene63484:CDS 40.0%
GGGCATCAATATGGCAAATA+TGG - chr3.1:56379711-56379730 MS.gene63484:intron 40.0%
GGTTCTGCTATACGCTTTAT+CGG + chr3.1:56380057-56380076 None:intergenic 40.0%
GTACTTGTCTGTAGTCTTTG+AGG - chr3.1:56378844-56378863 MS.gene63484:intron 40.0%
GTATACGAAAACACCACTTG+TGG - chr3.1:56378565-56378584 MS.gene63484:intron 40.0%
TCGGCTGTATACTCAATTGT+TGG + chr3.1:56378213-56378232 None:intergenic 40.0%
TTTGTTAAGACGCATGGGTT+TGG - chr3.1:56379739-56379758 MS.gene63484:intron 40.0%
! AAGTGGTGTTTTCGTATACC+AGG + chr3.1:56378564-56378583 None:intergenic 40.0%
! AGTGGTGTTTTCGTATACCA+GGG + chr3.1:56378563-56378582 None:intergenic 40.0%
! GTTGGTTTATCTGTGTATGG+AGG - chr3.1:56379839-56379858 MS.gene63484:intron 40.0%
! TGGAGGGTTTTCTGCTATAT+AGG - chr3.1:56379856-56379875 MS.gene63484:intron 40.0%
!! CAGATTGTTTCTGTTGATGG+AGG - chr3.1:56380138-56380157 MS.gene63484:CDS 40.0%
!! GGACAGATTGTTTCTGTTGA+TGG - chr3.1:56380135-56380154 MS.gene63484:CDS 40.0%
!! GTGGTTGGTTTATCTGTGTA+TGG - chr3.1:56379836-56379855 MS.gene63484:intron 40.0%
ACCAAGGAAGACACTTCATG+TGG + chr3.1:56380078-56380097 None:intergenic 45.0%
AGAGGAGCTTATTCGAAACG+TGG - chr3.1:56377934-56377953 MS.gene63484:intron 45.0%
AGCGTCTATGCAGCAAGTAA+AGG - chr3.1:56378375-56378394 MS.gene63484:intron 45.0%
AGCGTTTATTCAGCTCCTCT+TGG + chr3.1:56377844-56377863 None:intergenic 45.0%
ATGGATTTCAACCCAGCATG+AGG - chr3.1:56380172-56380191 MS.gene63484:CDS 45.0%
CCGCCATAGACAATTTGTGA+AGG + chr3.1:56379281-56379300 None:intergenic 45.0%
CGATGGTGCAATATGACAGA+AGG - chr3.1:56379198-56379217 MS.gene63484:intron 45.0%
GTGAATCAAACAGAAGGCAG+TGG + chr3.1:56379454-56379473 None:intergenic 45.0%
GTGATTACCAGTGTTGTCGA+TGG - chr3.1:56379181-56379200 MS.gene63484:intron 45.0%
GTTGAAGAACTCGCTGAGTT+TGG - chr3.1:56377791-56377810 MS.gene63484:CDS 45.0%
GTTGCATCTCTCACAAGCAT+AGG - chr3.1:56378345-56378364 MS.gene63484:intron 45.0%
TATTGCACCATCGACAACAC+TGG + chr3.1:56379191-56379210 None:intergenic 45.0%
TCTCTCACAAGCATAGGTTC+TGG - chr3.1:56378351-56378370 MS.gene63484:intron 45.0%
TGGCATCTTCACATGGATCA+AGG + chr3.1:56379516-56379535 None:intergenic 45.0%
TTGTAGCAAGTGATTCTGGG+TGG - chr3.1:56379630-56379649 MS.gene63484:CDS 45.0%
! ACCACATGAAGTGTCTTCCT+TGG - chr3.1:56380074-56380093 MS.gene63484:CDS 45.0%
! GCTGCAATGGCGTATTTCTA+TGG + chr3.1:56379234-56379253 None:intergenic 45.0%
! TTGGATGAACACCGACTGAT+TGG - chr3.1:56378682-56378701 MS.gene63484:intron 45.0%
!! CACTTGTTCTAGGAACCAAG+AGG - chr3.1:56377826-56377845 MS.gene63484:CDS 45.0%
!! GAGAGCGTTGAATCCTTTGA+GGG + chr3.1:56377735-56377754 None:intergenic 45.0%
!! TGGCTTTGAGGGCATCAATA+TGG - chr3.1:56379702-56379721 MS.gene63484:intron 45.0%
AACCACACGTCATTCTGCCA+TGG - chr3.1:56379311-56379330 MS.gene63484:CDS 50.0%
ACCACCTACACAAACACAGC+AGG + chr3.1:56379821-56379840 None:intergenic 50.0%
ACTAGAGCATGTGCAGATCC+AGG + chr3.1:56379780-56379799 None:intergenic 50.0%
AGCTCAAGATGGTCCCTCAA+AGG - chr3.1:56377719-56377738 MS.gene63484:CDS 50.0%
CAGGCAAAGGAAAGTCACCA+AGG + chr3.1:56380094-56380113 None:intergenic 50.0%
CATGTGTCTGTGTCCGACAT+TGG - chr3.1:56378079-56378098 MS.gene63484:intron 50.0%
GCAGTAGCAGAAGCTCAAGA+TGG - chr3.1:56377708-56377727 MS.gene63484:CDS 50.0%
GCTGTGTTTGTGTAGGTGGT+TGG - chr3.1:56379821-56379840 MS.gene63484:intron 50.0%
GTGTTGTCAAATGGCTGCCA+TGG + chr3.1:56379331-56379350 None:intergenic 50.0%
TGTGCCTGCTGTGTTTGTGT+AGG - chr3.1:56379814-56379833 MS.gene63484:intron 50.0%
!! CGAGAGCGTTGAATCCTTTG+AGG + chr3.1:56377736-56377755 None:intergenic 50.0%
CCAGCTGCTTCCTACATCAC+TGG - chr3.1:56380114-56380133 MS.gene63484:CDS 55.0%
CCAGTGATGTAGGAAGCAGC+TGG + chr3.1:56380117-56380136 None:intergenic 55.0%
CTGACAAATGGCGCTTCCCT+AGG + chr3.1:56379120-56379139 None:intergenic 55.0%
GCCTGCTGTGTTTGTGTAGG+TGG - chr3.1:56379817-56379836 MS.gene63484:intron 55.0%
GGATTCAACGCTCTCGTCAC+CGG - chr3.1:56377740-56377759 MS.gene63484:CDS 55.0%
TGATGTAGGAAGCAGCTGGC+AGG + chr3.1:56380113-56380132 None:intergenic 55.0%
TGCCATGGCAGAATGACGTG+TGG + chr3.1:56379316-56379335 None:intergenic 55.0%
TGGCATGGCATAGGCTGCAA+TGG + chr3.1:56379247-56379266 None:intergenic 55.0%
TTGCAGCCTATGCCATGCCA+TGG - chr3.1:56379247-56379266 MS.gene63484:intron 55.0%
TTGTGAAGGGATGCCTGCCA+TGG + chr3.1:56379267-56379286 None:intergenic 55.0%
AAGGGATGCCTGCCATGGCA+TGG + chr3.1:56379262-56379281 None:intergenic 60.0%
AGCCTATGCCATGCCATGGC+AGG - chr3.1:56379251-56379270 MS.gene63484:intron 60.0%
AGGAAGCAGCTGGCAGGCAA+AGG + chr3.1:56380107-56380126 None:intergenic 60.0%
TGCCTGCCATGGCATGGCAT+AGG + chr3.1:56379256-56379275 None:intergenic 60.0%
TTCAACGCTCTCGTCACCGG+CGG - chr3.1:56377743-56377762 MS.gene63484:CDS 60.0%
ACCGGCGGAACGCGTGGAAT+CGG - chr3.1:56377758-56377777 MS.gene63484:CDS 65.0%
GGAGCAACTGCGTTGCACCC+TGG - chr3.1:56378543-56378562 MS.gene63484:intron 65.0%
TCCGATTCCACGCGTTCCGC+CGG + chr3.1:56377762-56377781 None:intergenic 65.0%
CTCGTCACCGGCGGAACGCG+TGG - chr3.1:56377752-56377771 MS.gene63484:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 56377692 56380203 56377692 ID=MS.gene63484
chr3.1 mRNA 56377692 56380203 56377692 ID=MS.gene63484.t1;Parent=MS.gene63484
chr3.1 exon 56379907 56380203 56379907 ID=MS.gene63484.t1.exon1;Parent=MS.gene63484.t1
chr3.1 CDS 56379907 56380203 56379907 ID=cds.MS.gene63484.t1;Parent=MS.gene63484.t1
chr3.1 exon 56379499 56379715 56379499 ID=MS.gene63484.t1.exon2;Parent=MS.gene63484.t1
chr3.1 CDS 56379499 56379715 56379499 ID=cds.MS.gene63484.t1;Parent=MS.gene63484.t1
chr3.1 exon 56379303 56379409 56379303 ID=MS.gene63484.t1.exon3;Parent=MS.gene63484.t1
chr3.1 CDS 56379303 56379409 56379303 ID=cds.MS.gene63484.t1;Parent=MS.gene63484.t1
chr3.1 exon 56377692 56377886 56377692 ID=MS.gene63484.t1.exon4;Parent=MS.gene63484.t1
chr3.1 CDS 56377692 56377886 56377692 ID=cds.MS.gene63484.t1;Parent=MS.gene63484.t1
Gene Sequence

>MS.gene63484

ATGGCGAACGCAGAGAGCAGTAGCAGAAGCTCAAGATGGTCCCTCAAAGGATTCAACGCTCTCGTCACCGGCGGAACGCGTGGAATCGGACATGCTATCGTTGAAGAACTCGCTGAGTTTGGTGCCACAGTTTACACTTGTTCTAGGAACCAAGAGGAGCTGAATAAACGCTTAAACGAGTGGAAAGAGAAAGGTTTTTCTGTTTATGGATCAGTTTGTGATGCATCATCTTCTTCTCAAAGAGAGGAGCTTATTCGAAACGTGGCTTCTTCTTTCAACGGCAAACTCAACATATTTGTGAGTTTTTCCTTTTCTATATATTTTCTTTTGCATTTGTATATAATGTTGATATTGAAATTAAGAAAATGACGTAATTGTATGTAATCACATGTGTCTGTGTCCGACATTGGATATATCTTCAATCAGAAGTGTCGGTGTTATGTTATGACTTCAGCTCATATGTTGATATGATGTTCTTGTGAAATTAGGTGAACAATGCTGGAACAAATGTGAGGAAGCCAACAATTGAGTATACAGCCGAAGATTATTCGAAAGTGATGACTACTAACTTGGATTCTGCATACCATCTATGTCAATTGGTACATCCTCTGCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCATCTCTCACAAGCATAGGTTCTGGAAGCGTCTATGCAGCAAGTAAAGGTAATTCAATGTATCATTATGTTATCTTTAACCTTTTGCTTAAATATAATGGATGGAAACTAAAAAATTCACTGTGTTGTTTTCTTCAGCTGCAATCAATCAGTTGACAAAAAATCTTGCTTGTGAATGGGCGAAAGACAATATAAGGAGCAACTGCGTTGCACCCTGGTATACGAAAACACCACTTGTGGAACATGTAATGCTCTTTCACACCTTCAATTATTCATTCCATGGCTTTGTCATTTTTTTTATGAATATTGTTTGAATTTGTAATCATGATTTTATTTGGATGAACACCGACTGATTGGTCATTGTTTAATCAGGGGAATATGGTATTCTTCTATTTTGTTATTAGGTTCTTCATAGTAAATAATGATCTGTTCTTTGATGTTTTTACATTCATACTCATTTTTGTAGGATTAGTAAGAATTAAGATACAACTTAGAAGTACTTGTCTGTAGTCTTTGAGGCTCGATAATTCTTTAGATAATTGAACAGGAAAATCAAAATTGCTTGCATATTTGGGATGGCTCATATAGAGTCTTGTATAGCTGCATTGTGATTTCATTAGTACTCTTATCACAAGTTTAATGGTTTTCCATGTTGACGGAAAAATGTATCTTTTAGTGTTTTGTTTTCAATCAATGTAATTACTTCCATAAAGGTCATTTGATAATCAGACACTTTAAAGCATTAACAAACAAATTCACAATATTTGCACCTAGGGAAGCGCCATTTGTCAGTTAGAACCAAAAAGAATAAATTGGTTACTTCTTTCTTCTCAGTGATTACCAGTGTTGTCGATGGTGCAATATGACAGAAGGCTAAAATACGCCATAGAAATACGCCATTGCAGCCTATGCCATGCCATGGCAGGCATCCCTTCACAAATTGTCTATGGCGGTTGTCATAAAAACCACACGTCATTCTGCCATGGCAGCCATTTGACAACACTGACGATTACTTGCATTACATAAATTCATTTAGTATTGCATACAGGGTGACTTAAATGACAACTTTTTAACTGATCTGACAGTTTTTCTTCTCCATAATTCCACTGCCTTCTGTTTGATTCACGTATGTATATGATACACAATTGTGGCTCATCCAATGTTACCTTGATCCATGTGAAGATGCCAAAATCATGTTTTAGTATGTCCAATCTTTTATAGTTGAGGACTGTATATTTGGATATGGAACATTGATCTTTCTATGTGTTATTGTATTACACAGTTGTAGCAAGTGATTCTGGGTGGTCGTTTAGAATAAACTTCTTAAATTAATACATACGAATAAGAAATGAATTGGCTTTGAGGGCATCAATATGGCAAATATGGACTTTTTTGTTAAGACGCATGGGTTTGGCTCTTTAACATTTTTCCTGGATCTGCACATGCTCTAGTGTAGTGTGCTGTGCTGTGCCTGCTGTGTTTGTGTAGGTGGTTGGTTTATCTGTGTATGGAGGGTTTTCTGCTATATAGGCTAACTCATTAAGTGCTGATGAATCAAAACACATCTGTGACTCTAATGTCCGTGTGCTCATGTAGTATTAATCTATATATGGCAATGTTATGTTCATAACTTGTGTTGCGAATTGTTGTCTTTCTTACAGTTAATTGCTAACGAAGAGTTTGTGAATCAAGTGCTGTCTCGAACACCGATAAAGCGTATAGCAGAACCACATGAAGTGTCTTCCTTGGTGACTTTCCTTTGCCTGCCAGCTGCTTCCTACATCACTGGACAGATTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCATGAGGATTACCTAA

Protein sequence

>MS.gene63484.t1

MANAESSSRSSRWSLKGFNALVTGGTRGIGHAIVEELAEFGATVYTCSRNQEELNKRLNEWKEKGFSVYGSVCDASSSSQREELIRNVASSFNGKLNIFVNNAGTNVRKPTIEYTAEDYSKVMTTNLDSAYHLCQLVHPLLKESGNGSIVFISSVASLTSIGSGSVYAASKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTPLVEHLIANEEFVNQVLSRTPIKRIAEPHEVSSLVTFLCLPAASYITGQIVSVDGGFTVNGFQPSMRIT