Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74575.t1 | RHN72831.1 | 92.9 | 547 | 19 | 1 | 1 | 527 | 1 | 547 | 1.60E-282 | 981.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74575.t1 | P54769 | 65.9 | 522 | 153 | 5 | 2 | 518 | 20 | 521 | 3.4e-201 | 702.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74575.t1 | A0A396J8B4 | 92.9 | 547 | 19 | 1 | 1 | 527 | 1 | 547 | 1.1e-282 | 981.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene74575 | 0.87011 | 1.87E-66 | -1.69E-46 |
MS.gene049222 | MS.gene74575 | 0.839484 | 1.54E-57 | -1.69E-46 |
MS.gene049232 | MS.gene74575 | 0.802814 | 4.69E-49 | -1.69E-46 |
MS.gene049285 | MS.gene74575 | 0.827574 | 1.45E-54 | -1.69E-46 |
MS.gene049320 | MS.gene74575 | 0.814743 | 1.32E-51 | -1.69E-46 |
MS.gene04932 | MS.gene74575 | -0.804957 | 1.68E-49 | -1.69E-46 |
MS.gene049373 | MS.gene74575 | 0.809683 | 1.68E-50 | -1.69E-46 |
MS.gene049609 | MS.gene74575 | 0.848359 | 6.45E-60 | -1.69E-46 |
MS.gene049633 | MS.gene74575 | 0.865816 | 4.49E-65 | -1.69E-46 |
MS.gene049656 | MS.gene74575 | 0.801913 | 7.19E-49 | -1.69E-46 |
MS.gene049805 | MS.gene74575 | 0.819963 | 8.81E-53 | -1.69E-46 |
MS.gene049865 | MS.gene74575 | 0.812467 | 4.18E-51 | -1.69E-46 |
MS.gene05010 | MS.gene74575 | 0.812536 | 4.03E-51 | -1.69E-46 |
MS.gene050170 | MS.gene74575 | 0.901541 | 2.41E-78 | -1.69E-46 |
MS.gene050323 | MS.gene74575 | 0.870144 | 1.82E-66 | -1.69E-46 |
MS.gene050328 | MS.gene74575 | -0.806062 | 9.87E-50 | -1.69E-46 |
MS.gene050338 | MS.gene74575 | -0.823318 | 1.48E-53 | -1.69E-46 |
MS.gene050444 | MS.gene74575 | 0.805963 | 1.04E-49 | -1.69E-46 |
MS.gene050496 | MS.gene74575 | 0.864401 | 1.25E-64 | -1.69E-46 |
MS.gene050504 | MS.gene74575 | 0.818485 | 1.91E-52 | -1.69E-46 |
MS.gene050553 | MS.gene74575 | 0.802278 | 6.05E-49 | -1.69E-46 |
MS.gene050577 | MS.gene74575 | 0.844043 | 9.65E-59 | -1.69E-46 |
MS.gene050593 | MS.gene74575 | 0.820177 | 7.87E-53 | -1.69E-46 |
MS.gene050612 | MS.gene74575 | 0.828224 | 1.01E-54 | -1.69E-46 |
MS.gene050675 | MS.gene74575 | 0.816288 | 5.98E-52 | -1.69E-46 |
MS.gene050697 | MS.gene74575 | 0.836671 | 8.16E-57 | -1.69E-46 |
MS.gene050699 | MS.gene74575 | 0.843406 | 1.43E-58 | -1.69E-46 |
MS.gene050747 | MS.gene74575 | 0.857766 | 1.30E-62 | -1.69E-46 |
MS.gene050772 | MS.gene74575 | 0.842779 | 2.10E-58 | -1.69E-46 |
MS.gene05080 | MS.gene74575 | 0.853463 | 2.35E-61 | -1.69E-46 |
MS.gene05081 | MS.gene74575 | 0.882406 | 1.07E-70 | -1.69E-46 |
MS.gene050868 | MS.gene74575 | 0.867529 | 1.28E-65 | -1.69E-46 |
MS.gene050871 | MS.gene74575 | 0.865131 | 7.38E-65 | -1.69E-46 |
MS.gene050904 | MS.gene74575 | 0.818646 | 1.76E-52 | -1.69E-46 |
MS.gene050950 | MS.gene74575 | 0.851497 | 8.54E-61 | -1.69E-46 |
MS.gene050986 | MS.gene74575 | 0.812148 | 4.91E-51 | -1.69E-46 |
MS.gene051268 | MS.gene74575 | 0.800882 | 1.17E-48 | -1.69E-46 |
MS.gene051317 | MS.gene74575 | 0.821018 | 5.05E-53 | -1.69E-46 |
MS.gene051439 | MS.gene74575 | -0.80217 | 6.37E-49 | -1.69E-46 |
MS.gene051651 | MS.gene74575 | -0.815242 | 1.02E-51 | -1.69E-46 |
MS.gene051838 | MS.gene74575 | 0.901217 | 3.35E-78 | -1.69E-46 |
MS.gene051941 | MS.gene74575 | 0.855535 | 5.91E-62 | -1.69E-46 |
MS.gene052164 | MS.gene74575 | 0.824047 | 9.97E-54 | -1.69E-46 |
MS.gene052318 | MS.gene74575 | 0.843771 | 1.14E-58 | -1.69E-46 |
MS.gene052346 | MS.gene74575 | 0.845527 | 3.84E-59 | -1.69E-46 |
MS.gene05240 | MS.gene74575 | -0.809669 | 1.69E-50 | -1.69E-46 |
MS.gene052482 | MS.gene74575 | 0.826015 | 3.42E-54 | -1.69E-46 |
MS.gene052486 | MS.gene74575 | 0.835413 | 1.70E-56 | -1.69E-46 |
MS.gene052494 | MS.gene74575 | -0.821931 | 3.11E-53 | -1.69E-46 |
MS.gene052501 | MS.gene74575 | 0.844837 | 5.90E-59 | -1.69E-46 |
MS.gene052503 | MS.gene74575 | 0.894679 | 1.97E-75 | -1.69E-46 |
MS.gene052504 | MS.gene74575 | 0.826211 | 3.07E-54 | -1.69E-46 |
MS.gene052505 | MS.gene74575 | 0.830512 | 2.82E-55 | -1.69E-46 |
MS.gene052506 | MS.gene74575 | 0.867827 | 1.03E-65 | -1.69E-46 |
MS.gene052606 | MS.gene74575 | -0.806415 | 8.32E-50 | -1.69E-46 |
MS.gene052615 | MS.gene74575 | 0.842988 | 1.85E-58 | -1.69E-46 |
MS.gene052820 | MS.gene74575 | 0.830749 | 2.46E-55 | -1.69E-46 |
MS.gene052822 | MS.gene74575 | 0.864594 | 1.09E-64 | -1.69E-46 |
MS.gene052823 | MS.gene74575 | 0.890669 | 8.00E-74 | -1.69E-46 |
MS.gene052825 | MS.gene74575 | 0.89015 | 1.28E-73 | -1.69E-46 |
MS.gene052870 | MS.gene74575 | 0.808507 | 2.99E-50 | -1.69E-46 |
MS.gene052872 | MS.gene74575 | 0.82162 | 3.67E-53 | -1.69E-46 |
MS.gene052966 | MS.gene74575 | 0.856392 | 3.32E-62 | -1.69E-46 |
MS.gene052986 | MS.gene74575 | 0.805623 | 1.22E-49 | -1.69E-46 |
MS.gene052987 | MS.gene74575 | 0.807065 | 6.06E-50 | -1.69E-46 |
MS.gene053117 | MS.gene74575 | 0.837421 | 5.25E-57 | -1.69E-46 |
MS.gene053203 | MS.gene74575 | 0.854837 | 9.43E-62 | -1.69E-46 |
MS.gene053213 | MS.gene74575 | 0.811625 | 6.38E-51 | -1.69E-46 |
MS.gene053286 | MS.gene74575 | 0.806531 | 7.86E-50 | -1.69E-46 |
MS.gene053436 | MS.gene74575 | 0.85124 | 1.01E-60 | -1.69E-46 |
MS.gene053479 | MS.gene74575 | 0.87653 | 1.30E-68 | -1.69E-46 |
MS.gene053480 | MS.gene74575 | 0.875092 | 4.04E-68 | -1.69E-46 |
MS.gene053574 | MS.gene74575 | 0.830684 | 2.56E-55 | -1.69E-46 |
MS.gene053632 | MS.gene74575 | 0.806838 | 6.77E-50 | -1.69E-46 |
MS.gene053824 | MS.gene74575 | 0.883133 | 5.81E-71 | -1.69E-46 |
MS.gene053916 | MS.gene74575 | 0.809647 | 1.71E-50 | -1.69E-46 |
MS.gene054107 | MS.gene74575 | 0.824634 | 7.26E-54 | -1.69E-46 |
MS.gene054343 | MS.gene74575 | 0.840326 | 9.30E-58 | -1.69E-46 |
MS.gene054344 | MS.gene74575 | 0.875057 | 4.16E-68 | -1.69E-46 |
MS.gene054408 | MS.gene74575 | 0.832503 | 9.11E-56 | -1.69E-46 |
MS.gene054595 | MS.gene74575 | 0.84221 | 2.97E-58 | -1.69E-46 |
MS.gene054600 | MS.gene74575 | 0.819596 | 1.07E-52 | -1.69E-46 |
MS.gene054706 | MS.gene74575 | -0.825706 | 4.05E-54 | -1.69E-46 |
MS.gene05470 | MS.gene74575 | 0.84871 | 5.15E-60 | -1.69E-46 |
MS.gene054884 | MS.gene74575 | -0.82885 | 7.15E-55 | -1.69E-46 |
MS.gene054927 | MS.gene74575 | 0.804118 | 2.52E-49 | -1.69E-46 |
MS.gene05494 | MS.gene74575 | 0.841707 | 4.04E-58 | -1.69E-46 |
MS.gene054954 | MS.gene74575 | 0.828448 | 8.94E-55 | -1.69E-46 |
MS.gene055206 | MS.gene74575 | 0.850769 | 1.37E-60 | -1.69E-46 |
MS.gene055224 | MS.gene74575 | 0.825006 | 5.93E-54 | -1.69E-46 |
MS.gene055289 | MS.gene74575 | 0.820961 | 5.20E-53 | -1.69E-46 |
MS.gene055362 | MS.gene74575 | 0.834042 | 3.77E-56 | -1.69E-46 |
MS.gene055502 | MS.gene74575 | 0.855018 | 8.36E-62 | -1.69E-46 |
MS.gene055577 | MS.gene74575 | 0.839588 | 1.45E-57 | -1.69E-46 |
MS.gene055616 | MS.gene74575 | -0.80689 | 6.60E-50 | -1.69E-46 |
MS.gene055741 | MS.gene74575 | 0.829483 | 5.02E-55 | -1.69E-46 |
MS.gene055744 | MS.gene74575 | 0.821109 | 4.81E-53 | -1.69E-46 |
MS.gene055748 | MS.gene74575 | 0.837537 | 4.90E-57 | -1.69E-46 |
MS.gene055750 | MS.gene74575 | 0.8336 | 4.86E-56 | -1.69E-46 |
MS.gene055751 | MS.gene74575 | 0.829551 | 4.83E-55 | -1.69E-46 |
MS.gene05589 | MS.gene74575 | 0.899179 | 2.56E-77 | -1.69E-46 |
MS.gene055941 | MS.gene74575 | 0.839185 | 1.84E-57 | -1.69E-46 |
MS.gene056040 | MS.gene74575 | 0.808884 | 2.49E-50 | -1.69E-46 |
MS.gene056046 | MS.gene74575 | 0.810006 | 1.43E-50 | -1.69E-46 |
MS.gene056166 | MS.gene74575 | 0.83682 | 7.48E-57 | -1.69E-46 |
MS.gene056266 | MS.gene74575 | 0.809267 | 2.06E-50 | -1.69E-46 |
MS.gene056387 | MS.gene74575 | 0.857231 | 1.88E-62 | -1.69E-46 |
MS.gene056446 | MS.gene74575 | 0.817992 | 2.47E-52 | -1.69E-46 |
MS.gene056504 | MS.gene74575 | 0.877671 | 5.21E-69 | -1.69E-46 |
MS.gene056510 | MS.gene74575 | 0.83471 | 2.56E-56 | -1.69E-46 |
MS.gene056590 | MS.gene74575 | -0.803902 | 2.79E-49 | -1.69E-46 |
MS.gene056591 | MS.gene74575 | -0.803484 | 3.41E-49 | -1.69E-46 |
MS.gene056618 | MS.gene74575 | -0.806776 | 6.98E-50 | -1.69E-46 |
MS.gene056657 | MS.gene74575 | 0.819661 | 1.03E-52 | -1.69E-46 |
MS.gene056688 | MS.gene74575 | -0.802124 | 6.51E-49 | -1.69E-46 |
MS.gene056692 | MS.gene74575 | 0.812256 | 4.65E-51 | -1.69E-46 |
MS.gene056694 | MS.gene74575 | -0.828954 | 6.74E-55 | -1.69E-46 |
MS.gene056697 | MS.gene74575 | -0.841419 | 4.81E-58 | -1.69E-46 |
MS.gene056877 | MS.gene74575 | 0.835688 | 1.45E-56 | -1.69E-46 |
MS.gene056878 | MS.gene74575 | 0.803193 | 3.92E-49 | -1.69E-46 |
MS.gene057019 | MS.gene74575 | 0.822208 | 2.68E-53 | -1.69E-46 |
MS.gene057076 | MS.gene74575 | 0.839365 | 1.65E-57 | -1.69E-46 |
MS.gene057086 | MS.gene74575 | 0.819248 | 1.28E-52 | -1.69E-46 |
MS.gene057332 | MS.gene74575 | 0.838824 | 2.29E-57 | -1.69E-46 |
MS.gene057416 | MS.gene74575 | 0.80426 | 2.35E-49 | -1.69E-46 |
MS.gene057658 | MS.gene74575 | 0.855151 | 7.65E-62 | -1.69E-46 |
MS.gene057734 | MS.gene74575 | 0.808825 | 2.56E-50 | -1.69E-46 |
MS.gene057831 | MS.gene74575 | 0.833473 | 5.23E-56 | -1.69E-46 |
MS.gene057856 | MS.gene74575 | 0.825417 | 4.74E-54 | -1.69E-46 |
MS.gene057857 | MS.gene74575 | 0.804759 | 1.85E-49 | -1.69E-46 |
MS.gene05787 | MS.gene74575 | 0.826279 | 2.96E-54 | -1.69E-46 |
MS.gene058157 | MS.gene74575 | 0.8326 | 8.62E-56 | -1.69E-46 |
MS.gene058334 | MS.gene74575 | -0.84487 | 5.78E-59 | -1.69E-46 |
MS.gene058338 | MS.gene74575 | 0.864679 | 1.02E-64 | -1.69E-46 |
MS.gene05837 | MS.gene74575 | 0.872989 | 2.08E-67 | -1.69E-46 |
MS.gene058382 | MS.gene74575 | -0.856866 | 2.41E-62 | -1.69E-46 |
MS.gene058418 | MS.gene74575 | -0.818301 | 2.11E-52 | -1.69E-46 |
MS.gene058419 | MS.gene74575 | 0.841289 | 5.20E-58 | -1.69E-46 |
MS.gene058444 | MS.gene74575 | 0.804573 | 2.02E-49 | -1.69E-46 |
MS.gene058544 | MS.gene74575 | 0.85005 | 2.18E-60 | -1.69E-46 |
MS.gene058773 | MS.gene74575 | 0.815258 | 1.01E-51 | -1.69E-46 |
MS.gene058838 | MS.gene74575 | 0.897159 | 1.84E-76 | -1.69E-46 |
MS.gene059022 | MS.gene74575 | 0.826634 | 2.44E-54 | -1.69E-46 |
MS.gene059023 | MS.gene74575 | 0.882815 | 7.59E-71 | -1.69E-46 |
MS.gene059103 | MS.gene74575 | -0.803069 | 4.16E-49 | -1.69E-46 |
MS.gene05914 | MS.gene74575 | 0.815322 | 9.81E-52 | -1.69E-46 |
MS.gene05926 | MS.gene74575 | -0.835323 | 1.79E-56 | -1.69E-46 |
MS.gene059303 | MS.gene74575 | 0.843728 | 1.17E-58 | -1.69E-46 |
MS.gene059455 | MS.gene74575 | 0.801427 | 9.05E-49 | -1.69E-46 |
MS.gene059480 | MS.gene74575 | -0.802608 | 5.17E-49 | -1.69E-46 |
MS.gene059512 | MS.gene74575 | 0.805478 | 1.31E-49 | -1.69E-46 |
MS.gene05960 | MS.gene74575 | -0.840772 | 7.11E-58 | -1.69E-46 |
MS.gene059667 | MS.gene74575 | 0.860011 | 2.78E-63 | -1.69E-46 |
MS.gene059677 | MS.gene74575 | 0.828748 | 7.56E-55 | -1.69E-46 |
MS.gene059699 | MS.gene74575 | -0.8031 | 4.10E-49 | -1.69E-46 |
MS.gene059703 | MS.gene74575 | -0.812599 | 3.91E-51 | -1.69E-46 |
MS.gene059718 | MS.gene74575 | 0.832469 | 9.29E-56 | -1.69E-46 |
MS.gene059756 | MS.gene74575 | 0.828684 | 7.84E-55 | -1.69E-46 |
MS.gene059801 | MS.gene74575 | 0.80764 | 4.58E-50 | -1.69E-46 |
MS.gene059865 | MS.gene74575 | 0.821369 | 4.19E-53 | -1.69E-46 |
MS.gene05995 | MS.gene74575 | 0.80165 | 8.15E-49 | -1.69E-46 |
MS.gene05996 | MS.gene74575 | 0.828927 | 6.85E-55 | -1.69E-46 |
MS.gene06000 | MS.gene74575 | 0.874395 | 6.99E-68 | -1.69E-46 |
MS.gene06027 | MS.gene74575 | 0.868296 | 7.26E-66 | -1.69E-46 |
MS.gene060485 | MS.gene74575 | 0.825665 | 4.14E-54 | -1.69E-46 |
MS.gene060593 | MS.gene74575 | -0.808437 | 3.10E-50 | -1.69E-46 |
MS.gene060595 | MS.gene74575 | -0.800349 | 1.50E-48 | -1.69E-46 |
MS.gene060762 | MS.gene74575 | 0.844399 | 7.75E-59 | -1.69E-46 |
MS.gene060778 | MS.gene74575 | 0.837539 | 4.90E-57 | -1.69E-46 |
MS.gene06077 | MS.gene74575 | 0.850762 | 1.38E-60 | -1.69E-46 |
MS.gene060835 | MS.gene74575 | 0.843053 | 1.77E-58 | -1.69E-46 |
MS.gene06092 | MS.gene74575 | 0.832139 | 1.12E-55 | -1.69E-46 |
MS.gene06097 | MS.gene74575 | 0.812847 | 3.45E-51 | -1.69E-46 |
MS.gene060982 | MS.gene74575 | 0.869448 | 3.07E-66 | -1.69E-46 |
MS.gene061044 | MS.gene74575 | -0.841859 | 3.68E-58 | -1.69E-46 |
MS.gene061150 | MS.gene74575 | 0.801742 | 7.80E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74575.t1 | MTR_2g029430 | 94.497 | 527 | 26 | 1 | 1 | 527 | 1 | 524 | 0.0 | 1009 |
MS.gene74575.t1 | MTR_2g029450 | 94.497 | 527 | 26 | 1 | 1 | 527 | 1 | 524 | 0.0 | 1009 |
MS.gene74575.t1 | MTR_7g058700 | 91.082 | 527 | 27 | 1 | 1 | 527 | 1 | 507 | 0.0 | 979 |
MS.gene74575.t1 | MTR_8g028060 | 63.148 | 521 | 149 | 6 | 1 | 518 | 17 | 497 | 0.0 | 669 |
MS.gene74575.t1 | MTR_7g098730 | 52.794 | 519 | 207 | 2 | 1 | 519 | 24 | 504 | 0.0 | 588 |
MS.gene74575.t1 | MTR_7g098700 | 52.794 | 519 | 207 | 2 | 1 | 519 | 50 | 530 | 0.0 | 585 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74575.t1 | AT2G20340 | 51.737 | 518 | 212 | 2 | 1 | 518 | 9 | 488 | 0.0 | 588 |
MS.gene74575.t1 | AT4G28680 | 51.145 | 524 | 214 | 5 | 1 | 520 | 57 | 542 | 0.0 | 560 |
MS.gene74575.t1 | AT4G28680 | 51.141 | 526 | 213 | 6 | 1 | 520 | 48 | 535 | 0.0 | 557 |
MS.gene74575.t1 | AT4G28680 | 51.141 | 526 | 213 | 6 | 1 | 520 | 57 | 544 | 0.0 | 557 |
MS.gene74575.t1 | AT4G28680 | 51.141 | 526 | 213 | 6 | 1 | 520 | 57 | 544 | 0.0 | 557 |
MS.gene74575.t1 | AT4G28680 | 48.556 | 554 | 213 | 7 | 1 | 520 | 48 | 563 | 0.0 | 542 |
MS.gene74575.t1 | AT2G20340 | 47.297 | 518 | 208 | 2 | 1 | 518 | 9 | 461 | 0.0 | 529 |
MS.gene74575.t1 | AT4G28680 | 56.047 | 339 | 142 | 3 | 1 | 333 | 48 | 385 | 1.02e-138 | 408 |
MS.gene74575.t1 | AT4G28680 | 55.763 | 321 | 136 | 2 | 1 | 315 | 48 | 368 | 9.90e-133 | 390 |
Find 71 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAGGTAAACTTGTTGTTTA+TGG | 0.117744 | 2.3:-60215633 | MS.gene74575:CDS |
TCGCGAAAGATTATGGAATT+TGG | 0.139532 | 2.3:-60215377 | MS.gene74575:CDS |
TACAACCTGTGAAGGTATTT+TGG | 0.146910 | 2.3:-60215709 | MS.gene74575:CDS |
AAACACTTTATCAAAGAATT+TGG | 0.150243 | 2.3:+60215201 | None:intergenic |
GATAAAATTCTTAGCAAAAT+TGG | 0.200556 | 2.3:-60215666 | MS.gene74575:CDS |
TGCAATGTCGCGAAAGATTA+TGG | 0.240155 | 2.3:-60215384 | MS.gene74575:CDS |
ATTTAGATTGTTGTTGTCTT+TGG | 0.242997 | 2.3:-60215233 | MS.gene74575:CDS |
AACGACGAATTCTGAGTATT+TGG | 0.245937 | 2.3:-60215175 | MS.gene74575:CDS |
GGTAGCACAGCAGGGTTCTT+AGG | 0.266911 | 2.3:-60215891 | MS.gene74575:CDS |
GGAAAATAAGCAAAGTAATT+AGG | 0.271671 | 2.3:+60215921 | None:intergenic |
TTAGTCTTAATGCTCATAAA+TGG | 0.276313 | 2.3:-60215266 | MS.gene74575:CDS |
ATTGTTGATAACAATGATTC+AGG | 0.282223 | 2.3:+60215501 | None:intergenic |
TTGTTGTTGTCTTTGGTTAA+AGG | 0.284413 | 2.3:-60215226 | MS.gene74575:CDS |
CGCGAAAGATTATGGAATTT+GGG | 0.294467 | 2.3:-60215376 | MS.gene74575:CDS |
TGAACGTTGTTGGATTTAAC+TGG | 0.304439 | 2.3:-60215848 | MS.gene74575:CDS |
TAGAAAATGTTGTTATAGAT+TGG | 0.319360 | 2.3:-60215800 | MS.gene74575:CDS |
CAGAGGAAATGCATGTGATT+AGG | 0.320772 | 2.3:-60214657 | MS.gene74575:CDS |
TTGGATTCTATCAATGGTTC+AGG | 0.342114 | 2.3:-60214751 | MS.gene74575:CDS |
CCTGCTGTGCTACCACTTGA+TGG | 0.350739 | 2.3:+60215900 | None:intergenic |
GAAGATGTTATTGTTGCTAA+TGG | 0.351139 | 2.3:-60214847 | MS.gene74575:CDS |
AGAGGAAATGCATGTGATTA+GGG | 0.354844 | 2.3:-60214656 | MS.gene74575:CDS |
TTGAATTCTGTAGTATCTAG+TGG | 0.355450 | 2.3:+60216143 | None:intergenic |
TGAAATTAATCGTAAGTTGT+TGG | 0.367956 | 2.3:-60214770 | MS.gene74575:CDS |
GCTATGGTGTTGATAATCTT+AGG | 0.377963 | 2.3:-60215050 | MS.gene74575:CDS |
TTTAAGGAACCATGTTGAAA+TGG | 0.378514 | 2.3:-60215022 | MS.gene74575:CDS |
CCGAAGATTTCGCGCTTTGA+AGG | 0.381530 | 2.3:-60215091 | MS.gene74575:CDS |
CCTTCAAAGCGCGAAATCTT+CGG | 0.384803 | 2.3:+60215091 | None:intergenic |
CCATCAAGTGGTAGCACAGC+AGG | 0.386882 | 2.3:-60215900 | MS.gene74575:CDS |
GAGTTTAGATATTTGATTGA+TGG | 0.395614 | 2.3:-60215309 | MS.gene74575:CDS |
AGGATGGTTTCAATAGGTTC+AGG | 0.403995 | 2.3:+60215993 | None:intergenic |
AGCACTGGATTGAACGTTGT+TGG | 0.408006 | 2.3:-60215858 | MS.gene74575:CDS |
TCTTCAAGGATGGTTTCAAT+AGG | 0.409255 | 2.3:+60215987 | None:intergenic |
AAGTTGTTGGATTCTATCAA+TGG | 0.412524 | 2.3:-60214757 | MS.gene74575:CDS |
TGGTTTGTTCTTAGAAGCTA+TGG | 0.413847 | 2.3:-60215066 | MS.gene74575:CDS |
GATTTCGCGCTTTGAAGGTA+TGG | 0.415981 | 2.3:-60215086 | MS.gene74575:CDS |
CATGTTGATGCTGCCTATGC+TGG | 0.416728 | 2.3:-60215351 | MS.gene74575:CDS |
CTTTGCCAATGTGTTATACC+TGG | 0.443144 | 2.3:+60215945 | None:intergenic |
AAGTGGTTGATTACAAAGAT+TGG | 0.455962 | 2.3:-60215128 | MS.gene74575:CDS |
TGCTTTCTTTGTGTAACTGT+TGG | 0.466597 | 2.3:-60215447 | MS.gene74575:CDS |
TTAGGAGAAATGTTAAGCAC+TGG | 0.472185 | 2.3:-60215873 | MS.gene74575:CDS |
TTCAACGACCGCAATTGATC+CGG | 0.477720 | 2.3:-60215418 | MS.gene74575:CDS |
AGTTTGGTTCTACTTGACTT+AGG | 0.478980 | 2.3:+60216054 | None:intergenic |
ATGACTCATGCTGTGGTTGA+AGG | 0.487228 | 2.3:-60214718 | MS.gene74575:CDS |
GCTAATGGAAAGGTAACAAA+TGG | 0.487672 | 2.3:-60214892 | MS.gene74575:CDS |
AAATGCATGTGATTAGGGCT+TGG | 0.493317 | 2.3:-60214651 | MS.gene74575:CDS |
AGTTCCCAAAATACCTTCAC+AGG | 0.500257 | 2.3:+60215704 | None:intergenic |
TGAATTCTGTAGTATCTAGT+GGG | 0.505218 | 2.3:+60216144 | None:intergenic |
GGTTGGTGAAAATGGACAAA+AGG | 0.505578 | 2.3:-60214984 | MS.gene74575:CDS |
GGATTTGAAGGTGCAAAAGA+AGG | 0.506622 | 2.3:+60216014 | None:intergenic |
ACTTATCAGTCTTAATAGCC+CGG | 0.511731 | 2.3:+60215544 | None:intergenic |
TCAATAGGTTCAGGATTTGA+AGG | 0.516728 | 2.3:+60216002 | None:intergenic |
GGTTGATTACAAAGATTGGC+AGG | 0.516909 | 2.3:-60215124 | MS.gene74575:CDS |
GGTTCTACTTGACTTAGGAC+AGG | 0.523508 | 2.3:+60216059 | None:intergenic |
TTTGTGATTAGGTGTGCAGT+TGG | 0.533057 | 2.3:-60214691 | MS.gene74575:CDS |
TGCTTCTGATTCAAAACAAG+TGG | 0.538782 | 2.3:-60215145 | MS.gene74575:CDS |
GCTAATGGAAAGGTGACAAA+TGG | 0.553773 | 2.3:-60214832 | MS.gene74575:CDS |
TTATTAGGTACAACCTGTGA+AGG | 0.556540 | 2.3:-60215717 | MS.gene74575:CDS |
AATGTTGTTATAGATTGGCT+TGG | 0.556855 | 2.3:-60215795 | MS.gene74575:CDS |
TTTGCCAATGTGTTATACCT+GGG | 0.567911 | 2.3:+60215946 | None:intergenic |
AAAATTGGTAGTGAAAATGT+AGG | 0.570092 | 2.3:-60215651 | MS.gene74575:CDS |
GCATGTGATTAGGGCTTGGA+AGG | 0.593106 | 2.3:-60214647 | MS.gene74575:CDS |
AATACAAGCACTACCAGCAT+AGG | 0.595481 | 2.3:+60215338 | None:intergenic |
CATCAAGTGGTAGCACAGCA+GGG | 0.607312 | 2.3:-60215899 | MS.gene74575:CDS |
TCAATCAAATATCTAAACTC+AGG | 0.607405 | 2.3:+60215312 | None:intergenic |
ACAGTTACACAAAGAAAGCA+AGG | 0.627492 | 2.3:+60215450 | None:intergenic |
TGTTATTGTTGCTAATGGAA+AGG | 0.631501 | 2.3:-60214842 | MS.gene74575:CDS |
AGTTGGAGCAACTTTAACAG+AGG | 0.632037 | 2.3:-60214674 | MS.gene74575:CDS |
TAATCCCAGGTATAACACAT+TGG | 0.657713 | 2.3:-60215950 | MS.gene74575:CDS |
TGTGTACATGACTCATGCTG+TGG | 0.661042 | 2.3:-60214725 | MS.gene74575:CDS |
ACTACAGAATTCAAGAAACA+AGG | 0.665050 | 2.3:-60216134 | MS.gene74575:CDS |
ACGACCGCAATTGATCCGGT+AGG | 0.680678 | 2.3:-60215414 | MS.gene74575:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACAAAATGATTTGAAAAA+TGG | - | chr2.3:60215257-60215276 | MS.gene74575:CDS | 15.0% |
!!! | ATAATCTTAGGAATTTTTTA+AGG | - | chr2.3:60215699-60215718 | MS.gene74575:CDS | 15.0% |
!! | AAACACTTTATCAAAGAATT+TGG | + | chr2.3:60215539-60215558 | None:intergenic | 20.0% |
!! | AAATGATTTGAAAAATGGTT+TGG | - | chr2.3:60215262-60215281 | MS.gene74575:CDS | 20.0% |
!! | GATAAAATTCTTAGCAAAAT+TGG | - | chr2.3:60215071-60215090 | MS.gene74575:CDS | 20.0% |
!! | TAGAAAATGTTGTTATAGAT+TGG | - | chr2.3:60214937-60214956 | MS.gene74575:CDS | 20.0% |
! | GAGTTTAGATATTTGATTGA+TGG | - | chr2.3:60215428-60215447 | MS.gene74575:CDS | 25.0% |
! | GGAAAATAAGCAAAGTAATT+AGG | + | chr2.3:60214819-60214838 | None:intergenic | 25.0% |
! | TAAAAAAGTTGCTAATGGAA+AGG | - | chr2.3:60215835-60215854 | MS.gene74575:CDS | 25.0% |
! | TATGGTAAAAAAGTTGCTAA+TGG | - | chr2.3:60215830-60215849 | MS.gene74575:CDS | 25.0% |
! | TCAATCAAATATCTAAACTC+AGG | + | chr2.3:60215428-60215447 | None:intergenic | 25.0% |
! | TGAAATTAATCGTAAGTTGT+TGG | - | chr2.3:60215967-60215986 | MS.gene74575:CDS | 25.0% |
!! | AAATGGCTAAAACTTTTGAA+GGG | - | chr2.3:60215732-60215751 | MS.gene74575:CDS | 25.0% |
!! | ATTTAGATTGTTGTTGTCTT+TGG | - | chr2.3:60215504-60215523 | MS.gene74575:CDS | 25.0% |
!! | CCTAAGAGTTTTCTTTTTAA+AGG | - | chr2.3:60214981-60215000 | MS.gene74575:CDS | 25.0% |
!! | CCTTTAAAAAGAAAACTCTT+AGG | + | chr2.3:60214984-60215003 | None:intergenic | 25.0% |
!! | TGTTTTCATAATAATCAGCT+AGG | + | chr2.3:60214647-60214666 | None:intergenic | 25.0% |
!!! | AAAATTGGTAGTGAAAATGT+AGG | - | chr2.3:60215086-60215105 | MS.gene74575:CDS | 25.0% |
!!! | AACTTTCTCTTGTTTGTTTT+AGG | - | chr2.3:60215798-60215817 | MS.gene74575:CDS | 25.0% |
!!! | AAGAGTTTTCTTTTTAAAGG+TGG | - | chr2.3:60214984-60215003 | MS.gene74575:CDS | 25.0% |
!!! | ATTGTTGATAACAATGATTC+AGG | + | chr2.3:60215239-60215258 | None:intergenic | 25.0% |
!!! | TGTGTTTTTGATAATCTTCA+AGG | + | chr2.3:60214767-60214786 | None:intergenic | 25.0% |
!!! | TGTTTTAGGATTTTACCATA+TGG | - | chr2.3:60215812-60215831 | MS.gene74575:CDS | 25.0% |
!!! | TTAGCAACTTTTTTACCATA+TGG | + | chr2.3:60215830-60215849 | None:intergenic | 25.0% |
!!! | TTAGTCTTAATGCTCATAAA+TGG | - | chr2.3:60215471-60215490 | MS.gene74575:CDS | 25.0% |
!!! | TTTTTGATAATCTTCAAGGA+TGG | + | chr2.3:60214763-60214782 | None:intergenic | 25.0% |
AAGTGGTTGATTACAAAGAT+TGG | - | chr2.3:60215609-60215628 | MS.gene74575:CDS | 30.0% | |
AAGTTGTTGGATTCTATCAA+TGG | - | chr2.3:60215980-60215999 | MS.gene74575:CDS | 30.0% | |
ACTACAGAATTCAAGAAACA+AGG | - | chr2.3:60214603-60214622 | MS.gene74575:CDS | 30.0% | |
CAAAAAGCAGCTCATATAAT+AGG | - | chr2.3:60215152-60215171 | MS.gene74575:CDS | 30.0% | |
GAAGATGTTATTGTTGCTAA+TGG | - | chr2.3:60215890-60215909 | MS.gene74575:CDS | 30.0% | |
TATCAAAAACACATAATCCC+AGG | - | chr2.3:60214774-60214793 | MS.gene74575:CDS | 30.0% | |
TGAATTCTGTAGTATCTAGT+GGG | + | chr2.3:60214596-60214615 | None:intergenic | 30.0% | |
TGTTATTGTTGCTAATGGAA+AGG | - | chr2.3:60215895-60215914 | MS.gene74575:CDS | 30.0% | |
TTGAATTCTGTAGTATCTAG+TGG | + | chr2.3:60214597-60214616 | None:intergenic | 30.0% | |
TTTAAGGAACCATGTTGAAA+TGG | - | chr2.3:60215715-60215734 | MS.gene74575:CDS | 30.0% | |
! | AATGTTGTTATAGATTGGCT+TGG | - | chr2.3:60214942-60214961 | MS.gene74575:CDS | 30.0% |
! | CAAACAAGAGAAAGTTTTCT+AGG | + | chr2.3:60215794-60215813 | None:intergenic | 30.0% |
! | GAAATGGCTAAAACTTTTGA+AGG | - | chr2.3:60215731-60215750 | MS.gene74575:CDS | 30.0% |
! | TTAATAGCCCGGAAATTTTT+CGG | + | chr2.3:60215185-60215204 | None:intergenic | 30.0% |
! | TTGAAGGAGTTTTTGTGATT+AGG | - | chr2.3:60216035-60216054 | MS.gene74575:CDS | 30.0% |
! | TTGTTGTTGTCTTTGGTTAA+AGG | - | chr2.3:60215511-60215530 | MS.gene74575:CDS | 30.0% |
!! | AAGTTTTAGCCATTTCAACA+TGG | + | chr2.3:60215727-60215746 | None:intergenic | 30.0% |
!! | AGTTTTCTTTTTAAAGGTGG+TGG | - | chr2.3:60214987-60215006 | MS.gene74575:CDS | 30.0% |
!! | GTAGGTAAACTTGTTGTTTA+TGG | - | chr2.3:60215104-60215123 | MS.gene74575:CDS | 30.0% |
!! | TTTGCTTATTTTCCATCAAG+TGG | - | chr2.3:60214825-60214844 | MS.gene74575:CDS | 30.0% |
!!! | AACAGTTTTTTGAGGTAGTT+TGG | + | chr2.3:60214702-60214721 | None:intergenic | 30.0% |
!!! | AAGAAGGTAACAGTTTTTTG+AGG | + | chr2.3:60214710-60214729 | None:intergenic | 30.0% |
AACGACGAATTCTGAGTATT+TGG | - | chr2.3:60215562-60215581 | MS.gene74575:CDS | 35.0% | |
AATAGACCCGAAAAATTTCC+GGG | - | chr2.3:60215175-60215194 | MS.gene74575:CDS | 35.0% | |
ACAGTTACACAAAGAAAGCA+AGG | + | chr2.3:60215290-60215309 | None:intergenic | 35.0% | |
ACTTATCAGTCTTAATAGCC+CGG | + | chr2.3:60215196-60215215 | None:intergenic | 35.0% | |
AGAGGAAATGCATGTGATTA+GGG | - | chr2.3:60216081-60216100 | MS.gene74575:CDS | 35.0% | |
CGCGAAAGATTATGGAATTT+GGG | - | chr2.3:60215361-60215380 | MS.gene74575:CDS | 35.0% | |
GAATAGACCCGAAAAATTTC+CGG | - | chr2.3:60215174-60215193 | MS.gene74575:CDS | 35.0% | |
GCTAATGGAAAGGTAACAAA+TGG | - | chr2.3:60215845-60215864 | MS.gene74575:CDS | 35.0% | |
TAATCCCAGGTATAACACAT+TGG | - | chr2.3:60214787-60214806 | MS.gene74575:CDS | 35.0% | |
TCAATAGGTTCAGGATTTGA+AGG | + | chr2.3:60214738-60214757 | None:intergenic | 35.0% | |
TCGCGAAAGATTATGGAATT+TGG | - | chr2.3:60215360-60215379 | MS.gene74575:CDS | 35.0% | |
TCTTCAAGGATGGTTTCAAT+AGG | + | chr2.3:60214753-60214772 | None:intergenic | 35.0% | |
TGAACGTTGTTGGATTTAAC+TGG | - | chr2.3:60214889-60214908 | MS.gene74575:CDS | 35.0% | |
TGCTTCTGATTCAAAACAAG+TGG | - | chr2.3:60215592-60215611 | MS.gene74575:CDS | 35.0% | |
TGCTTTCTTTGTGTAACTGT+TGG | - | chr2.3:60215290-60215309 | MS.gene74575:CDS | 35.0% | |
TTAGGAGAAATGTTAAGCAC+TGG | - | chr2.3:60214864-60214883 | MS.gene74575:CDS | 35.0% | |
TTATTAGGTACAACCTGTGA+AGG | - | chr2.3:60215020-60215039 | MS.gene74575:CDS | 35.0% | |
TTGGATTCTATCAATGGTTC+AGG | - | chr2.3:60215986-60216005 | MS.gene74575:CDS | 35.0% | |
TTTGCCAATGTGTTATACCT+GGG | + | chr2.3:60214794-60214813 | None:intergenic | 35.0% | |
! | ACATTGCACAATTTTCCTAC+CGG | + | chr2.3:60215341-60215360 | None:intergenic | 35.0% |
! | TAATAGCCCGGAAATTTTTC+GGG | + | chr2.3:60215184-60215203 | None:intergenic | 35.0% |
!! | AGTTTGGTTCTACTTGACTT+AGG | + | chr2.3:60214686-60214705 | None:intergenic | 35.0% |
!! | GCTATGGTGTTGATAATCTT+AGG | - | chr2.3:60215687-60215706 | MS.gene74575:CDS | 35.0% |
!! | TGGTTTGTTCTTAGAAGCTA+TGG | - | chr2.3:60215671-60215690 | MS.gene74575:CDS | 35.0% |
!! | TTTCTTTTTAAAGGTGGTGG+CGG | - | chr2.3:60214990-60215009 | MS.gene74575:CDS | 35.0% |
!!! | ACAACCTGTGAAGGTATTTT+GGG | - | chr2.3:60215029-60215048 | MS.gene74575:CDS | 35.0% |
!!! | TACAACCTGTGAAGGTATTT+TGG | - | chr2.3:60215028-60215047 | MS.gene74575:CDS | 35.0% |
!!! | TTTTGAAGGGTTGGTGAAAA+TGG | - | chr2.3:60215745-60215764 | MS.gene74575:CDS | 35.0% |
AAATGCATGTGATTAGGGCT+TGG | - | chr2.3:60216086-60216105 | MS.gene74575:CDS | 40.0% | |
AATACAAGCACTACCAGCAT+AGG | + | chr2.3:60215402-60215421 | None:intergenic | 40.0% | |
AGGATGGTTTCAATAGGTTC+AGG | + | chr2.3:60214747-60214766 | None:intergenic | 40.0% | |
AGTTCCCAAAATACCTTCAC+AGG | + | chr2.3:60215036-60215055 | None:intergenic | 40.0% | |
AGTTGGAGCAACTTTAACAG+AGG | - | chr2.3:60216063-60216082 | MS.gene74575:CDS | 40.0% | |
CAGAGGAAATGCATGTGATT+AGG | - | chr2.3:60216080-60216099 | MS.gene74575:CDS | 40.0% | |
CTTTGCCAATGTGTTATACC+TGG | + | chr2.3:60214795-60214814 | None:intergenic | 40.0% | |
GCTAATGGAAAGGTGACAAA+TGG | - | chr2.3:60215905-60215924 | MS.gene74575:CDS | 40.0% | |
GGTTGATTACAAAGATTGGC+AGG | - | chr2.3:60215613-60215632 | MS.gene74575:CDS | 40.0% | |
TGCAATGTCGCGAAAGATTA+TGG | - | chr2.3:60215353-60215372 | MS.gene74575:CDS | 40.0% | |
TTTGTGATTAGGTGTGCAGT+TGG | - | chr2.3:60216046-60216065 | MS.gene74575:CDS | 40.0% | |
! | GGATTTGAAGGTGCAAAAGA+AGG | + | chr2.3:60214726-60214745 | None:intergenic | 40.0% |
! | TTTTCCTACCGGATCAATTG+CGG | + | chr2.3:60215330-60215349 | None:intergenic | 40.0% |
!! | GGCTAAAACTTTTGAAGGGT+TGG | - | chr2.3:60215736-60215755 | MS.gene74575:CDS | 40.0% |
!! | GGTTGGTGAAAATGGACAAA+AGG | - | chr2.3:60215753-60215772 | MS.gene74575:CDS | 40.0% |
!!! | TTTTCTAGTTCTGTAGCAGC+TGG | + | chr2.3:60214924-60214943 | None:intergenic | 40.0% |
ATGACTCATGCTGTGGTTGA+AGG | - | chr2.3:60216019-60216038 | MS.gene74575:CDS | 45.0% | |
CCTTCAAAGCGCGAAATCTT+CGG | + | chr2.3:60215649-60215668 | None:intergenic | 45.0% | |
GGTTCTACTTGACTTAGGAC+AGG | + | chr2.3:60214681-60214700 | None:intergenic | 45.0% | |
TGTGTACATGACTCATGCTG+TGG | - | chr2.3:60216012-60216031 | MS.gene74575:CDS | 45.0% | |
TTCAACGACCGCAATTGATC+CGG | - | chr2.3:60215319-60215338 | MS.gene74575:CDS | 45.0% | |
! | AGCACTGGATTGAACGTTGT+TGG | - | chr2.3:60214879-60214898 | MS.gene74575:CDS | 45.0% |
!! | GATTTCGCGCTTTGAAGGTA+TGG | - | chr2.3:60215651-60215670 | MS.gene74575:CDS | 45.0% |
CATCAAGTGGTAGCACAGCA+GGG | - | chr2.3:60214838-60214857 | MS.gene74575:CDS | 50.0% | |
CATGTTGATGCTGCCTATGC+TGG | - | chr2.3:60215386-60215405 | MS.gene74575:CDS | 50.0% | |
CCGAAGATTTCGCGCTTTGA+AGG | - | chr2.3:60215646-60215665 | MS.gene74575:CDS | 50.0% | |
GCATGTGATTAGGGCTTGGA+AGG | - | chr2.3:60216090-60216109 | MS.gene74575:CDS | 50.0% | |
!!! | CTTTTTAAAGGTGGTGGCGG+CGG | - | chr2.3:60214993-60215012 | MS.gene74575:CDS | 50.0% |
ACGACCGCAATTGATCCGGT+AGG | - | chr2.3:60215323-60215342 | MS.gene74575:CDS | 55.0% | |
CCATCAAGTGGTAGCACAGC+AGG | - | chr2.3:60214837-60214856 | MS.gene74575:CDS | 55.0% | |
CCTGCTGTGCTACCACTTGA+TGG | + | chr2.3:60214840-60214859 | None:intergenic | 55.0% | |
GGTAGCACAGCAGGGTTCTT+AGG | - | chr2.3:60214846-60214865 | MS.gene74575:CDS | 55.0% | |
!! | GGTGGCGGCGGTGTTTTATT+AGG | - | chr2.3:60215005-60215024 | MS.gene74575:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 60214588 | 60216171 | 60214588 | ID=MS.gene74575 |
chr2.3 | mRNA | 60214588 | 60216171 | 60214588 | ID=MS.gene74575.t1;Parent=MS.gene74575 |
chr2.3 | exon | 60214588 | 60216171 | 60214588 | ID=MS.gene74575.t1.exon1;Parent=MS.gene74575.t1 |
chr2.3 | CDS | 60214588 | 60216171 | 60214588 | ID=cds.MS.gene74575.t1;Parent=MS.gene74575.t1 |
Gene Sequence |
Protein sequence |