Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25981.t1 | XP_003601236.2 | 99.2 | 123 | 1 | 0 | 1 | 123 | 254 | 376 | 1.30E-59 | 238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25981.t1 | G7J4W9 | 99.2 | 123 | 1 | 0 | 1 | 123 | 254 | 376 | 9.6e-60 | 238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25981 | -0.82284 | 1.91E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene25981 | -0.827112 | 1.87E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene25981 | -0.811587 | 6.50E-51 | -1.69E-46 |
| MS.gene049227 | MS.gene25981 | -0.804649 | 1.95E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene25981 | -0.822082 | 2.87E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene25981 | -0.845989 | 2.88E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene25981 | -0.813213 | 2.87E-51 | -1.69E-46 |
| MS.gene049411 | MS.gene25981 | -0.823027 | 1.73E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene25981 | -0.82324 | 1.54E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene25981 | -0.832282 | 1.03E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene25981 | -0.871539 | 6.33E-67 | -1.69E-46 |
| MS.gene049887 | MS.gene25981 | -0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene25981 | -0.804239 | 2.38E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene25981 | -0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene05035 | MS.gene25981 | -0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene25981 | -0.845076 | 5.09E-59 | -1.69E-46 |
| MS.gene050559 | MS.gene25981 | -0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene25981 | -0.868583 | 5.86E-66 | -1.69E-46 |
| MS.gene050654 | MS.gene25981 | -0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene25981 | -0.818151 | 2.28E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene25981 | -0.816823 | 4.53E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene25981 | -0.849797 | 2.57E-60 | -1.69E-46 |
| MS.gene050901 | MS.gene25981 | -0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene25981 | -0.863414 | 2.53E-64 | -1.69E-46 |
| MS.gene050955 | MS.gene25981 | -0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene25981 | -0.828778 | 7.44E-55 | -1.69E-46 |
| MS.gene051043 | MS.gene25981 | -0.834564 | 2.79E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene25981 | -0.878209 | 3.38E-69 | -1.69E-46 |
| MS.gene051279 | MS.gene25981 | -0.821947 | 3.08E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene25981 | -0.848699 | 5.19E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene25981 | -0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene051642 | MS.gene25981 | -0.8067 | 7.24E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene25981 | -0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene25981 | -0.82975 | 4.32E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene25981 | -0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene25981 | -0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene25981 | -0.809046 | 2.30E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene25981 | -0.814605 | 1.41E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene25981 | -0.838108 | 3.50E-57 | -1.69E-46 |
| MS.gene052016 | MS.gene25981 | -0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene25981 | -0.859044 | 5.43E-63 | -1.69E-46 |
| MS.gene052239 | MS.gene25981 | 0.861979 | 7.01E-64 | -1.69E-46 |
| MS.gene052242 | MS.gene25981 | 0.859656 | 3.56E-63 | -1.69E-46 |
| MS.gene052307 | MS.gene25981 | -0.853805 | 1.87E-61 | -1.69E-46 |
| MS.gene052335 | MS.gene25981 | -0.833239 | 5.98E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene25981 | -0.814275 | 1.67E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene25981 | -0.843138 | 1.68E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene25981 | -0.85273 | 3.81E-61 | -1.69E-46 |
| MS.gene052628 | MS.gene25981 | -0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene052793 | MS.gene25981 | -0.840268 | 9.63E-58 | -1.69E-46 |
| MS.gene052932 | MS.gene25981 | -0.809574 | 1.77E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene25981 | -0.813112 | 3.02E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene25981 | -0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene25981 | -0.806056 | 9.90E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene25981 | -0.870391 | 1.51E-66 | -1.69E-46 |
| MS.gene053144 | MS.gene25981 | -0.820621 | 6.23E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene25981 | -0.804714 | 1.89E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene25981 | 0.807267 | 5.50E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene25981 | -0.830696 | 2.54E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene25981 | -0.825418 | 4.74E-54 | -1.69E-46 |
| MS.gene054004 | MS.gene25981 | -0.822065 | 2.89E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene25981 | -0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene25981 | -0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene25981 | -0.82168 | 3.55E-53 | -1.69E-46 |
| MS.gene054413 | MS.gene25981 | -0.819768 | 9.77E-53 | -1.69E-46 |
| MS.gene054554 | MS.gene25981 | -0.807526 | 4.84E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene25981 | -0.805971 | 1.03E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene25981 | -0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene054709 | MS.gene25981 | -0.836915 | 7.07E-57 | -1.69E-46 |
| MS.gene054824 | MS.gene25981 | -0.817774 | 2.77E-52 | -1.69E-46 |
| MS.gene055220 | MS.gene25981 | -0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene055221 | MS.gene25981 | -0.828132 | 1.07E-54 | -1.69E-46 |
| MS.gene055229 | MS.gene25981 | -0.817354 | 3.44E-52 | -1.69E-46 |
| MS.gene05538 | MS.gene25981 | -0.806837 | 6.78E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene25981 | -0.802387 | 5.75E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene25981 | -0.816976 | 4.19E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene25981 | -0.833535 | 5.04E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene25981 | 0.821988 | 3.01E-53 | -1.69E-46 |
| MS.gene055765 | MS.gene25981 | -0.801355 | 9.36E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene25981 | 0.822443 | 2.36E-53 | -1.69E-46 |
| MS.gene056082 | MS.gene25981 | -0.821632 | 3.64E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene25981 | -0.818766 | 1.65E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene25981 | -0.845113 | 4.97E-59 | -1.69E-46 |
| MS.gene056578 | MS.gene25981 | -0.828662 | 7.94E-55 | -1.69E-46 |
| MS.gene056677 | MS.gene25981 | -0.845594 | 3.68E-59 | -1.69E-46 |
| MS.gene056699 | MS.gene25981 | -0.824574 | 7.50E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene25981 | -0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene25981 | -0.891791 | 2.88E-74 | -1.69E-46 |
| MS.gene057694 | MS.gene25981 | -0.814259 | 1.69E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene25981 | -0.822198 | 2.69E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene25981 | -0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene25981 | 0.838931 | 2.15E-57 | -1.69E-46 |
| MS.gene058008 | MS.gene25981 | -0.806728 | 7.15E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene25981 | -0.802899 | 4.51E-49 | -1.69E-46 |
| MS.gene058149 | MS.gene25981 | -0.843509 | 1.34E-58 | -1.69E-46 |
| MS.gene058159 | MS.gene25981 | -0.82069 | 6.00E-53 | -1.69E-46 |
| MS.gene058261 | MS.gene25981 | -0.834731 | 2.53E-56 | -1.69E-46 |
| MS.gene058279 | MS.gene25981 | -0.81741 | 3.35E-52 | -1.69E-46 |
| MS.gene058330 | MS.gene25981 | -0.843982 | 1.00E-58 | -1.69E-46 |
| MS.gene058492 | MS.gene25981 | -0.823991 | 1.03E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene25981 | -0.800709 | 1.27E-48 | -1.69E-46 |
| MS.gene058852 | MS.gene25981 | -0.824557 | 7.57E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene25981 | -0.837269 | 5.74E-57 | -1.69E-46 |
| MS.gene059170 | MS.gene25981 | -0.829174 | 5.96E-55 | -1.69E-46 |
| MS.gene059171 | MS.gene25981 | -0.827181 | 1.80E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene25981 | -0.842921 | 1.92E-58 | -1.69E-46 |
| MS.gene059778 | MS.gene25981 | -0.843096 | 1.73E-58 | -1.69E-46 |
| MS.gene05985 | MS.gene25981 | 0.867986 | 9.13E-66 | -1.69E-46 |
| MS.gene059901 | MS.gene25981 | 0.818532 | 1.87E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene25981 | -0.812523 | 4.06E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene25981 | -0.809631 | 1.72E-50 | -1.69E-46 |
| MS.gene060343 | MS.gene25981 | 0.825225 | 5.26E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene25981 | -0.817413 | 3.34E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene25981 | -0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene25981 | -0.81792 | 2.57E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene25981 | -0.830243 | 3.28E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene25981 | -0.828425 | 9.05E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene25981 | -0.842835 | 2.03E-58 | -1.69E-46 |
| MS.gene061006 | MS.gene25981 | -0.814333 | 1.63E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene25981 | -0.907241 | 6.27E-81 | -1.69E-46 |
| MS.gene061160 | MS.gene25981 | -0.81929 | 1.26E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene25981 | -0.831316 | 1.79E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25981.t1 | MTR_3g077500 | 99.187 | 123 | 1 | 0 | 1 | 123 | 254 | 376 | 8.24e-83 | 247 |
| MS.gene25981.t1 | MTR_3g111540 | 38.393 | 112 | 69 | 0 | 6 | 117 | 236 | 347 | 1.65e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25981.t1 | AT5G63040 | 84.821 | 112 | 17 | 0 | 1 | 112 | 245 | 356 | 3.68e-56 | 178 |
| MS.gene25981.t1 | AT5G63040 | 84.821 | 112 | 17 | 0 | 1 | 112 | 245 | 356 | 5.42e-56 | 178 |
| MS.gene25981.t1 | AT1G48460 | 41.071 | 112 | 66 | 0 | 6 | 117 | 185 | 296 | 1.25e-22 | 90.1 |
| MS.gene25981.t1 | AT1G48460 | 41.071 | 112 | 66 | 0 | 6 | 117 | 222 | 333 | 2.11e-22 | 90.1 |
Find 42 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTACTTGAAAGATTAA+TGG | 0.186826 | 3.3:-65764473 | None:intergenic |
| GCTTTATCATTCACAGTTAG+AGG | 0.284069 | 3.3:+65765062 | MS.gene25981:CDS |
| CATACTGCTCAAATGCAAAT+TGG | 0.318732 | 3.3:-65764415 | None:intergenic |
| CATGGCTATAAACAGCTCTT+TGG | 0.321164 | 3.3:+65765106 | MS.gene25981:CDS |
| GGAATTGTAGGACATTTAGA+AGG | 0.334567 | 3.3:-65765133 | None:intergenic |
| TGTAATTCCCATGGTCACTA+TGG | 0.335205 | 3.3:+65764322 | None:intergenic |
| TCCCATGGTCACTATGGGTT+TGG | 0.348807 | 3.3:+65764328 | None:intergenic |
| CGCAACTCTTGCTCCGTACC+TGG | 0.368258 | 3.3:+65764379 | MS.gene25981:CDS |
| GCAAGAGTTGCGGAGGCTGC+GGG | 0.391097 | 3.3:-65764368 | None:intergenic |
| TCCTTGGTGTGATTTGCATC+TGG | 0.400119 | 3.3:+65765153 | MS.gene25981:CDS |
| ACTAAATAGAGCAGCACAAC+TGG | 0.402095 | 3.3:+65765034 | MS.gene25981:CDS |
| ATTCTGGACTTCACTGCATC+GGG | 0.403109 | 3.3:-65765220 | None:intergenic |
| ATCTCATGAGGAAGCTTGAC+AGG | 0.413139 | 3.3:-65765178 | None:intergenic |
| GTTGTTATTTACAGGTGTAT+AGG | 0.423319 | 3.3:+65765003 | MS.gene25981:intron |
| AGCAAGAGTTGCGGAGGCTG+CGG | 0.424504 | 3.3:-65764369 | None:intergenic |
| GGTTTGGTCTGGCCATGGAC+TGG | 0.426393 | 3.3:+65764344 | MS.gene25981:CDS |
| GTTGTGCTGCTCTATTTAGT+TGG | 0.426838 | 3.3:-65765031 | None:intergenic |
| ATGGCTATAAACAGCTCTTT+GGG | 0.429410 | 3.3:+65765107 | MS.gene25981:CDS |
| GATATCGGAAGTCACCTTCA+TGG | 0.441603 | 3.3:+65764441 | MS.gene25981:CDS |
| CTATGGGTTTGGTCTGGCCA+TGG | 0.445695 | 3.3:+65764339 | MS.gene25981:CDS |
| GTAATTCCCATGGTCACTAT+GGG | 0.460084 | 3.3:+65764323 | None:intergenic |
| CTAAATGTCCTACAATTCCT+TGG | 0.466535 | 3.3:+65765137 | MS.gene25981:CDS |
| GAGGCTGCGGGGCCAGTCCA+TGG | 0.473216 | 3.3:-65764356 | None:intergenic |
| AAATCACACCAAGGAATTGT+AGG | 0.479343 | 3.3:-65765145 | None:intergenic |
| TTGAGCAGTATGCAAGATAT+CGG | 0.484764 | 3.3:+65764426 | MS.gene25981:CDS |
| TGGTCACTATGGGTTTGGTC+TGG | 0.490074 | 3.3:+65764333 | MS.gene25981:CDS |
| AATTCTGGACTTCACTGCAT+CGG | 0.521546 | 3.3:-65765221 | None:intergenic |
| GACCAAACCCATAGTGACCA+TGG | 0.592987 | 3.3:-65764330 | None:intergenic |
| ACTCTTGCTCCGTACCTGGT+TGG | 0.596249 | 3.3:+65764383 | MS.gene25981:CDS |
| AATGGAATTGCAGACCATGA+AGG | 0.608122 | 3.3:-65764455 | None:intergenic |
| ACAACTATACCAACCAGGTA+CGG | 0.611265 | 3.3:-65764392 | None:intergenic |
| GAATTGTAGGACATTTAGAA+GGG | 0.618173 | 3.3:-65765132 | None:intergenic |
| CAAGAGTTGCGGAGGCTGCG+GGG | 0.618410 | 3.3:-65764367 | None:intergenic |
| GTACGGAGCAAGAGTTGCGG+AGG | 0.624407 | 3.3:-65764375 | None:intergenic |
| ACCAAACCCATAGTGACCAT+GGG | 0.631445 | 3.3:-65764329 | None:intergenic |
| TCTCATGAGGAAGCTTGACA+GGG | 0.637541 | 3.3:-65765177 | None:intergenic |
| TGAGTTGACTTCACATAACA+TGG | 0.642393 | 3.3:+65765088 | MS.gene25981:CDS |
| CAGAAGGTATAAATCTCATG+AGG | 0.642726 | 3.3:-65765190 | None:intergenic |
| TGCATCGGGTTTGAAGCAGA+AGG | 0.650671 | 3.3:-65765206 | None:intergenic |
| ATTGGACAACTATACCAACC+AGG | 0.701067 | 3.3:-65764397 | None:intergenic |
| CAGGTACGGAGCAAGAGTTG+CGG | 0.709613 | 3.3:-65764378 | None:intergenic |
| ACCAGATGCAAATCACACCA+AGG | 0.715295 | 3.3:-65765154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr3.3:65764626-65764645 | MS.gene25981:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr3.3:65764627-65764646 | None:intergenic | 15.0% |
| !! | GATTATCAAAATATGAATTT+AGG | - | chr3.3:65764849-65764868 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr3.3:65764753-65764772 | MS.gene25981:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr3.3:65764650-65764669 | MS.gene25981:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr3.3:65764636-65764655 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr3.3:65764593-65764612 | MS.gene25981:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3.3:65764713-65764732 | MS.gene25981:intron | 20.0% |
| !!! | CAAATTAAGTTGTTATTTAC+AGG | + | chr3.3:65764995-65765014 | MS.gene25981:intron | 20.0% |
| ! | GTTCTTACTTGAAAGATTAA+TGG | - | chr3.3:65764476-65764495 | None:intergenic | 25.0% |
| !! | TTTATCCAGTTTTACCTAAT+TGG | + | chr3.3:65764820-65764839 | MS.gene25981:intron | 25.0% |
| !!! | ACAATTTTTTTTGGCTAAAG+CGG | + | chr3.3:65764762-65764781 | MS.gene25981:intron | 25.0% |
| ATGAATTTAGGCAACCAATT+AGG | - | chr3.3:65764837-65764856 | None:intergenic | 30.0% | |
| GAATTGTAGGACATTTAGAA+GGG | - | chr3.3:65765135-65765154 | None:intergenic | 30.0% | |
| GTATATTCATTCATTTCACC+AGG | - | chr3.3:65764516-65764535 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr3.3:65764544-65764563 | None:intergenic | 30.0% |
| !! | CTTAGTTCTCTATCTTTTCT+TGG | + | chr3.3:65764900-65764919 | MS.gene25981:intron | 30.0% |
| !! | GTTGTTATTTACAGGTGTAT+AGG | + | chr3.3:65765003-65765022 | MS.gene25981:intron | 30.0% |
| !! | TCTTTTCTTGGATTGATTCT+CGG | + | chr3.3:65764912-65764931 | MS.gene25981:intron | 30.0% |
| AAATCACACCAAGGAATTGT+AGG | - | chr3.3:65765148-65765167 | None:intergenic | 35.0% | |
| ATGGCTATAAACAGCTCTTT+GGG | + | chr3.3:65765107-65765126 | MS.gene25981:CDS | 35.0% | |
| CATACTGCTCAAATGCAAAT+TGG | - | chr3.3:65764418-65764437 | None:intergenic | 35.0% | |
| CTAAATGTCCTACAATTCCT+TGG | + | chr3.3:65765137-65765156 | MS.gene25981:CDS | 35.0% | |
| GCTTTATCATTCACAGTTAG+AGG | + | chr3.3:65765062-65765081 | MS.gene25981:CDS | 35.0% | |
| GGAATTGTAGGACATTTAGA+AGG | - | chr3.3:65765136-65765155 | None:intergenic | 35.0% | |
| TTGAGCAGTATGCAAGATAT+CGG | + | chr3.3:65764426-65764445 | MS.gene25981:CDS | 35.0% | |
| ! | CAGAAGGTATAAATCTCATG+AGG | - | chr3.3:65765193-65765212 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr3.3:65764675-65764694 | MS.gene25981:intron | 35.0% |
| ! | TGAGTTGACTTCACATAACA+TGG | + | chr3.3:65765088-65765107 | MS.gene25981:CDS | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr3.3:65764679-65764698 | MS.gene25981:intron | 35.0% |
| !!! | AACGACACTCATTTTGAAAC+GGG | - | chr3.3:65764543-65764562 | None:intergenic | 35.0% |
| AATGGAATTGCAGACCATGA+AGG | - | chr3.3:65764458-65764477 | None:intergenic | 40.0% | |
| ACAACTATACCAACCAGGTA+CGG | - | chr3.3:65764395-65764414 | None:intergenic | 40.0% | |
| ACTAAATAGAGCAGCACAAC+TGG | + | chr3.3:65765034-65765053 | MS.gene25981:CDS | 40.0% | |
| ATTGGACAACTATACCAACC+AGG | - | chr3.3:65764400-65764419 | None:intergenic | 40.0% | |
| CATGGCTATAAACAGCTCTT+TGG | + | chr3.3:65765106-65765125 | MS.gene25981:CDS | 40.0% | |
| GGCAACCAATTAGGTAAAAC+TGG | - | chr3.3:65764828-65764847 | None:intergenic | 40.0% | |
| TTCATTTCACCAGGAAACTG+AGG | - | chr3.3:65764507-65764526 | None:intergenic | 40.0% | |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr3.3:65764678-65764697 | MS.gene25981:intron | 40.0% |
| ! | GTTGTGCTGCTCTATTTAGT+TGG | - | chr3.3:65765034-65765053 | None:intergenic | 40.0% |
| !! | AAGCGGCACTCATTTTGAAA+CGG | + | chr3.3:65764779-65764798 | MS.gene25981:intron | 40.0% |
| !!! | ACGACACTCATTTTGAAACG+GGG | - | chr3.3:65764542-65764561 | None:intergenic | 40.0% |
| ACCAGATGCAAATCACACCA+AGG | - | chr3.3:65765157-65765176 | None:intergenic | 45.0% | |
| ATCTCATGAGGAAGCTTGAC+AGG | - | chr3.3:65765181-65765200 | None:intergenic | 45.0% | |
| CAATCCAATCCTCAGTTTCC+TGG | + | chr3.3:65764495-65764514 | MS.gene25981:intron | 45.0% | |
| GATATCGGAAGTCACCTTCA+TGG | + | chr3.3:65764441-65764460 | MS.gene25981:CDS | 45.0% | |
| TCTCATGAGGAAGCTTGACA+GGG | - | chr3.3:65765180-65765199 | None:intergenic | 45.0% | |
| TTCACCAGGAAACTGAGGAT+TGG | - | chr3.3:65764502-65764521 | None:intergenic | 45.0% | |
| ! | TCCTTGGTGTGATTTGCATC+TGG | + | chr3.3:65765153-65765172 | MS.gene25981:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+GGG | - | chr3.3:65764541-65764560 | None:intergenic | 45.0% |
| !!! | GACACTCATTTTGAAACGGG+GGG | - | chr3.3:65764540-65764559 | None:intergenic | 45.0% |
| !!! | GGCACTCATTTTGAAACGGA+GGG | + | chr3.3:65764783-65764802 | MS.gene25981:intron | 45.0% |
| ! | TGCATCGGGTTTGAAGCAGA+AGG | - | chr3.3:65765209-65765228 | None:intergenic | 50.0% |
| ! | TGGTCACTATGGGTTTGGTC+TGG | + | chr3.3:65764333-65764352 | MS.gene25981:CDS | 50.0% |
| !!! | CGGCACTCATTTTGAAACGG+AGG | + | chr3.3:65764782-65764801 | MS.gene25981:intron | 50.0% |
| ACTCTTGCTCCGTACCTGGT+TGG | + | chr3.3:65764383-65764402 | MS.gene25981:CDS | 55.0% | |
| CAGGTACGGAGCAAGAGTTG+CGG | - | chr3.3:65764381-65764400 | None:intergenic | 55.0% | |
| ! | CTATGGGTTTGGTCTGGCCA+TGG | + | chr3.3:65764339-65764358 | MS.gene25981:CDS | 55.0% |
| AGCAAGAGTTGCGGAGGCTG+CGG | - | chr3.3:65764372-65764391 | None:intergenic | 60.0% | |
| CGCAACTCTTGCTCCGTACC+TGG | + | chr3.3:65764379-65764398 | MS.gene25981:CDS | 60.0% | |
| GTACGGAGCAAGAGTTGCGG+AGG | - | chr3.3:65764378-65764397 | None:intergenic | 60.0% | |
| ! | GGTTTGGTCTGGCCATGGAC+TGG | + | chr3.3:65764344-65764363 | MS.gene25981:CDS | 60.0% |
| CAAGAGTTGCGGAGGCTGCG+GGG | - | chr3.3:65764370-65764389 | None:intergenic | 65.0% | |
| GCAAGAGTTGCGGAGGCTGC+GGG | - | chr3.3:65764371-65764390 | None:intergenic | 65.0% | |
| GAGGCTGCGGGGCCAGTCCA+TGG | - | chr3.3:65764359-65764378 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65764332 | 65765232 | 65764332 | ID=MS.gene25981 |
| chr3.3 | mRNA | 65764332 | 65765232 | 65764332 | ID=MS.gene25981.t1;Parent=MS.gene25981 |
| chr3.3 | exon | 65764332 | 65764487 | 65764332 | ID=MS.gene25981.t1.exon1;Parent=MS.gene25981.t1 |
| chr3.3 | CDS | 65764332 | 65764487 | 65764332 | ID=cds.MS.gene25981.t1;Parent=MS.gene25981.t1 |
| chr3.3 | exon | 65765017 | 65765232 | 65765017 | ID=MS.gene25981.t1.exon2;Parent=MS.gene25981.t1 |
| chr3.3 | CDS | 65765017 | 65765232 | 65765017 | ID=cds.MS.gene25981.t1;Parent=MS.gene25981.t1 |
| Gene Sequence |
| Protein sequence |
