AlfalfaGEDB | MS.gene062940

M. sativa cultivar XinJiangDaYe / MS.gene062940

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062940.t1	AES89295.1	90.3	93	9	0	1	93	1	93	3.00E-40	174.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062940.t1	P33079	71.0	93	27	0	1	93	1	93	5.3e-33	141.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062940.t1	G7JL20	90.3	93	9	0	1	93	1	93	2.2e-40	174.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057926	MS.gene062940	0.81719	3.75E-52	-1.69E-46
MS.gene060818	MS.gene062940	0.806438	8.23E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene045362	MS.gene062940	PPI
MS.gene77523	MS.gene062940	PPI
MS.gene003587	MS.gene062940	PPI
MS.gene062940	MS.gene75315	PPI
MS.gene062940	MS.gene68164	PPI
MS.gene045368	MS.gene062940	PPI
MS.gene063112	MS.gene062940	PPI
MS.gene062940	MS.gene68759	PPI
MS.gene79890	MS.gene062940	PPI
MS.gene003615	MS.gene062940	PPI
MS.gene062973	MS.gene062940	PPI
MS.gene77526	MS.gene062940	PPI
MS.gene047517	MS.gene062940	PPI
MS.gene045360	MS.gene062940	PPI
MS.gene062940	MS.gene014223	PPI
MS.gene057818	MS.gene062940	PPI
MS.gene50687	MS.gene062940	PPI
MS.gene40327	MS.gene062940	PPI
MS.gene062940	MS.gene014669	PPI
MS.gene062940	MS.gene057808	PPI
MS.gene75677	MS.gene062940	PPI
MS.gene057795	MS.gene062940	PPI
MS.gene68165	MS.gene062940	PPI
MS.gene045361	MS.gene062940	PPI
MS.gene062940	MS.gene68163	PPI
MS.gene50675	MS.gene062940	PPI
MS.gene003591	MS.gene062940	PPI
MS.gene062979	MS.gene062940	PPI
MS.gene003590	MS.gene062940	PPI
MS.gene062943	MS.gene062940	PPI
MS.gene062940	MS.gene79889	PPI
MS.gene003608	MS.gene062940	PPI
MS.gene062940	MS.gene014222	PPI
MS.gene062940	MS.gene79888	PPI
MS.gene40326	MS.gene062940	PPI
MS.gene062940	MS.gene75678	PPI
MS.gene062940	MS.gene75314	PPI
MS.gene062940	MS.gene01764	PPI
MS.gene50676	MS.gene062940	PPI
MS.gene062940	MS.gene79885	PPI
MS.gene23370	MS.gene062940	PPI
MS.gene50766	MS.gene062940	PPI
MS.gene003594	MS.gene062940	PPI
MS.gene062940	MS.gene031198	PPI
MS.gene50677	MS.gene062940	PPI
MS.gene003625	MS.gene062940	PPI
MS.gene062940	MS.gene50764	PPI
MS.gene062940	MS.gene75672	PPI
MS.gene50763	MS.gene062940	PPI
MS.gene062940	MS.gene50654	PPI
MS.gene062940	MS.gene014670	PPI
MS.gene01358	MS.gene062940	PPI
MS.gene062940	MS.gene77524	PPI
MS.gene50659	MS.gene062940	PPI
MS.gene062940	MS.gene79887	PPI
MS.gene057790	MS.gene062940	PPI
MS.gene062952	MS.gene062940	PPI
MS.gene003624	MS.gene062940	PPI
MS.gene062940	MS.gene75679	PPI
MS.gene031199	MS.gene062940	PPI
MS.gene062940	MS.gene40325	PPI
MS.gene77529	MS.gene062940	PPI
MS.gene68761	MS.gene062940	PPI
MS.gene014667	MS.gene062940	PPI
MS.gene68760	MS.gene062940	PPI
MS.gene75676	MS.gene062940	PPI
MS.gene50665	MS.gene062940	PPI
MS.gene062940	MS.gene50684	PPI
MS.gene062940	MS.gene057797	PPI
MS.gene062940	MS.gene003614	PPI
MS.gene003586	MS.gene062940	PPI
MS.gene062940	MS.gene014668	PPI
MS.gene057778	MS.gene062940	PPI
MS.gene062940	MS.gene77528	PPI
MS.gene062988	MS.gene062940	PPI
MS.gene062940	MS.gene79886	PPI
MS.gene062940	MS.gene014671	PPI
MS.gene75673	MS.gene062940	PPI
MS.gene062940	MS.gene50765	PPI
MS.gene062940	MS.gene003596	PPI
MS.gene045366	MS.gene062940	PPI
MS.gene062963	MS.gene062940	PPI
MS.gene062940	MS.gene062974	PPI
MS.gene75674	MS.gene062940	PPI
MS.gene031200	MS.gene062940	PPI
MS.gene045365	MS.gene062940	PPI
MS.gene062940	MS.gene003583	PPI
MS.gene062940	MS.gene062951	PPI
MS.gene062940	MS.gene057801	PPI
MS.gene062940	MS.gene77527	PPI
MS.gene062940	MS.gene79891	PPI
MS.gene003602	MS.gene062940	PPI
MS.gene23372	MS.gene062940	PPI
MS.gene062940	MS.gene68162	PPI
MS.gene062940	MS.gene045367	PPI
MS.gene062940	MS.gene045364	PPI
MS.gene062940	MS.gene045363	PPI
MS.gene75316	MS.gene062940	PPI
MS.gene062940	MS.gene75675	PPI
MS.gene003627	MS.gene062940	PPI
MS.gene003577	MS.gene062940	PPI
MS.gene062984	MS.gene062940	PPI
MS.gene062940	MS.gene50652	PPI
MS.gene23371	MS.gene062940	PPI
MS.gene062940	MS.gene002380	PPI
MS.gene031201	MS.gene062940	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062940.t1	MTR_4g072220	90.323	93	9	0	1	93	1	93	9.87e-59	175
MS.gene062940.t1	MTR_4g072890	87.912	91	11	0	1	91	1	91	4.68e-57	171
MS.gene062940.t1	MTR_4g072260	86.022	93	13	0	1	93	1	93	3.11e-56	168
MS.gene062940.t1	MTR_4g072240	82.418	91	16	0	1	91	1	91	1.49e-53	162
MS.gene062940.t1	MTR_4g072300	81.319	91	17	0	1	91	1	91	3.80e-53	160
MS.gene062940.t1	MTR_4g072870	79.121	91	19	0	1	91	1	91	7.98e-50	152
MS.gene062940.t1	MTR_4g072500	65.591	93	31	1	1	93	1	92	5.55e-42	132
MS.gene062940.t1	MTR_3g084240	67.742	93	29	1	1	93	1	92	1.12e-41	132
MS.gene062940.t1	MTR_4g072310	63.441	93	34	0	1	93	1	93	1.23e-41	132
MS.gene062940.t1	MTR_3g084150	65.591	93	31	1	1	93	1	92	1.35e-41	131
MS.gene062940.t1	MTR_4g072370	67.033	91	27	1	1	91	1	88	1.42e-41	131
MS.gene062940.t1	MTR_3g084170	67.742	93	29	1	1	93	1	92	3.25e-41	130
MS.gene062940.t1	MTR_3g110032	65.591	93	32	0	1	93	1	93	5.60e-41	130
MS.gene062940.t1	MTR_3g084180	64.516	93	32	1	1	93	1	92	1.04e-40	129
MS.gene062940.t1	MTR_3g110038	67.742	93	29	1	1	93	1	92	1.21e-40	129
MS.gene062940.t1	MTR_4g072530	65.934	91	30	1	1	91	1	90	1.60e-40	129
MS.gene062940.t1	MTR_4g072640	65.934	91	30	1	1	91	1	90	1.90e-40	129
MS.gene062940.t1	MTR_4g072630	68.132	91	24	1	1	91	1	86	3.78e-40	127
MS.gene062940.t1	MTR_8g461410	63.441	93	33	1	1	93	1	92	4.67e-40	127
MS.gene062940.t1	MTR_4g050700	64.516	93	33	0	1	93	1	93	7.29e-40	127
MS.gene062940.t1	MTR_2g012410	64.516	93	33	0	1	93	1	93	7.29e-40	127
MS.gene062940.t1	MTR_4g072580	65.934	91	25	1	1	91	1	85	8.68e-40	127
MS.gene062940.t1	MTR_4g072570	64.516	93	32	1	1	93	1	92	1.24e-39	126
MS.gene062940.t1	MTR_4g072280	80.000	75	15	0	1	75	1	75	1.34e-39	126
MS.gene062940.t1	MTR_3g084220	65.591	93	31	1	1	93	1	92	1.96e-39	126
MS.gene062940.t1	MTR_4g072880	61.290	93	36	0	1	93	1	93	2.26e-39	126
MS.gene062940.t1	MTR_3g110042	67.778	90	28	1	1	90	1	89	3.08e-39	125
MS.gene062940.t1	MTR_4g072740	65.934	91	25	1	1	91	1	85	3.37e-39	125
MS.gene062940.t1	MTR_4g072230	62.366	93	33	1	1	93	1	91	5.83e-39	125
MS.gene062940.t1	MTR_4g072330	64.835	91	29	1	1	91	1	88	7.96e-39	124
MS.gene062940.t1	MTR_4g072860	61.290	93	36	0	1	93	1	93	2.36e-38	123
MS.gene062940.t1	MTR_4g072250	62.366	93	34	1	1	93	1	92	2.44e-38	123
MS.gene062940.t1	MTR_3g084250	65.591	93	31	1	1	93	1	92	2.91e-38	123
MS.gene062940.t1	MTR_4g072490	63.736	91	27	1	1	91	1	85	4.79e-38	122
MS.gene062940.t1	MTR_4g072850	65.957	94	31	1	1	93	1	94	5.40e-38	122
MS.gene062940.t1	MTR_4g072830	64.835	91	29	1	1	91	1	88	7.21e-38	122
MS.gene062940.t1	MTR_3g117630	62.222	90	34	0	4	93	3	92	9.52e-38	122
MS.gene062940.t1	MTR_4g072610	63.736	91	26	1	1	91	1	84	9.84e-38	122
MS.gene062940.t1	MTR_4g072470	63.736	91	27	1	1	91	1	85	1.19e-37	121
MS.gene062940.t1	MTR_4g072480	60.215	93	36	1	1	93	1	92	4.32e-37	120
MS.gene062940.t1	MTR_4g072820	64.130	92	27	1	1	92	1	86	4.37e-37	120
MS.gene062940.t1	MTR_3g084260	61.290	93	36	0	1	93	1	93	4.81e-37	120
MS.gene062940.t1	MTR_4g072270	59.140	93	38	0	1	93	1	93	9.70e-37	119
MS.gene062940.t1	MTR_4g072600	63.736	91	27	1	1	91	1	85	1.04e-36	119
MS.gene062940.t1	MTR_4g072650	63.736	91	26	1	1	91	1	84	1.76e-36	118
MS.gene062940.t1	MTR_4g072620	58.065	93	38	1	1	93	1	92	6.78e-36	117
MS.gene062940.t1	MTR_4g072670	61.538	91	30	1	1	91	1	86	7.49e-36	117
MS.gene062940.t1	MTR_4g072730	57.609	92	38	1	1	92	1	91	9.31e-36	117
MS.gene062940.t1	MTR_4g072680	59.140	93	37	1	1	93	1	92	1.03e-35	117
MS.gene062940.t1	MTR_4g072510	62.637	91	29	1	1	91	1	86	1.80e-35	116
MS.gene062940.t1	MTR_4g072465	60.440	91	31	1	1	91	1	86	1.80e-35	116
MS.gene062940.t1	MTR_3g084210	66.667	93	30	1	1	93	1	92	9.41e-35	114
MS.gene062940.t1	MTR_3g084190	67.742	93	29	1	1	93	1	92	1.28e-34	114
MS.gene062940.t1	MTR_4g072720	60.440	91	31	1	1	91	1	86	1.35e-34	114
MS.gene062940.t1	MTR_8g461420	66.667	93	30	1	1	93	1	92	1.47e-34	114
MS.gene062940.t1	MTR_4g072460	58.065	93	38	1	1	93	1	92	1.56e-34	114
MS.gene062940.t1	MTR_4g072540	60.440	91	31	1	1	91	1	86	2.39e-34	113
MS.gene062940.t1	MTR_4g072590	63.736	91	27	1	1	91	1	85	6.24e-34	112
MS.gene062940.t1	MTR_3g084160	65.591	93	31	1	1	93	1	92	7.72e-34	112
MS.gene062940.t1	MTR_3g084230	65.591	93	31	1	1	93	1	92	8.42e-34	112
MS.gene062940.t1	MTR_4g072940	69.444	72	22	0	22	93	53	124	1.39e-33	112
MS.gene062940.t1	MTR_3g110045	70.833	72	21	0	22	93	80	151	4.82e-33	112
MS.gene062940.t1	MTR_4g072660	55.914	93	35	1	1	93	1	87	6.05e-33	109
MS.gene062940.t1	MTR_5g008350	66.250	80	21	1	1	80	1	74	6.84e-33	109
MS.gene062940.t1	MTR_4g072690	63.736	91	27	1	1	91	1	85	9.67e-33	109
MS.gene062940.t1	MTR_4g072450	63.736	91	27	1	1	91	1	85	1.13e-32	108
MS.gene062940.t1	MTR_5g008360	63.158	76	28	0	18	93	8	83	1.02e-31	106
MS.gene062940.t1	MTR_3g084200	68.493	73	22	1	1	73	1	72	2.14e-31	106
MS.gene062940.t1	MTR_4g072380	60.227	88	30	1	1	88	1	83	1.90e-30	103
MS.gene062940.t1	MTR_5g008370	69.118	68	21	0	25	92	24	91	2.94e-30	104
MS.gene062940.t1	MTR_4g072550	63.014	73	27	0	21	93	31	103	4.04e-30	103
MS.gene062940.t1	MTR_4g072910	64.179	67	24	0	25	91	34	100	4.15e-29	100
MS.gene062940.t1	MTR_4g072980	49.474	95	46	2	1	93	1	95	6.90e-29	99.8
MS.gene062940.t1	MTR_4g072770	65.672	67	23	0	26	92	15	81	8.99e-29	99.0
MS.gene062940.t1	MTR_3g117640	63.768	69	24	1	25	92	33	101	3.42e-28	98.2
MS.gene062940.t1	MTR_4g072560	60.606	66	25	1	26	90	32	97	1.19e-26	94.4
MS.gene062940.t1	MTR_4g072750	64.000	75	24	2	1	73	1	74	3.56e-26	92.8
MS.gene062940.t1	MTR_4g072930	49.398	83	38	1	14	92	29	111	4.57e-25	90.5
MS.gene062940.t1	MTR_4g072290	47.312	93	35	1	1	93	1	79	2.56e-23	85.1
MS.gene062940.t1	MTR_3g113310	55.224	67	29	1	24	90	40	105	1.31e-22	84.3
MS.gene062940.t1	MTR_3g110035	60.606	66	26	0	28	93	73	138	2.02e-22	84.7
MS.gene062940.t1	MTR_3g117610	58.462	65	26	1	24	88	43	106	8.84e-22	82.4
MS.gene062940.t1	MTR_4g072190	48.193	83	39	2	8	90	21	99	7.76e-21	79.7
MS.gene062940.t1	MTR_2g043960	53.086	81	33	2	7	83	53	132	1.58e-20	80.5
MS.gene062940.t1	MTR_6g077850	49.254	67	34	0	25	91	33	99	1.65e-20	78.6
MS.gene062940.t1	MTR_4g124750	51.852	81	37	2	4	83	46	125	4.85e-20	79.0
MS.gene062940.t1	MTR_5g021820	48.810	84	39	3	10	90	21	103	8.34e-20	77.0
MS.gene062940.t1	MTR_8g076040	47.619	84	40	2	8	88	20	102	6.50e-19	74.7
MS.gene062940.t1	MTR_8g461400	46.237	93	23	2	1	93	1	66	8.01e-19	73.6
MS.gene062940.t1	MTR_4g025830	49.315	73	33	2	23	92	76	147	1.72e-17	72.8
MS.gene062940.t1	MTR_3g092220	45.455	77	39	2	9	83	16	91	2.77e-17	70.9
MS.gene062940.t1	MTR_4g005310	46.154	78	35	2	16	86	46	123	5.68e-17	71.2
MS.gene062940.t1	MTR_7g118010	55.556	63	25	2	26	86	23	84	1.25e-16	68.9
MS.gene062940.t1	MTR_4g072160	45.000	80	43	1	4	83	15	93	1.04e-15	67.4
MS.gene062940.t1	MTR_8g026730	48.529	68	32	2	26	91	27	93	1.33e-15	66.6
MS.gene062940.t1	MTR_0388s0020	40.449	89	48	3	7	92	57	143	1.43e-15	67.4
MS.gene062940.t1	MTR_4g072840	44.565	92	20	3	1	92	1	61	1.63e-15	65.1
MS.gene062940.t1	MTR_1g009150	53.226	62	28	1	17	78	62	122	2.09e-15	67.8
MS.gene062940.t1	MTR_1g024085	46.250	80	31	2	4	83	26	93	2.89e-15	66.6
MS.gene062940.t1	MTR_1g094750	40.000	95	44	3	4	86	16	109	1.31e-14	64.3
MS.gene062940.t1	MTR_4g005320	54.717	53	23	1	26	78	70	121	5.42e-14	63.5
MS.gene062940.t1	MTR_1g061570	53.333	60	25	2	25	84	18	74	1.33e-13	61.6
MS.gene062940.t1	MTR_3g109160	49.296	71	35	1	8	78	51	120	2.05e-13	62.4
MS.gene062940.t1	MTR_3g097120	41.250	80	38	2	19	90	2	80	2.58e-13	60.5
MS.gene062940.t1	MTR_7g101740	45.588	68	36	1	25	92	39	105	4.84e-13	60.1
MS.gene062940.t1	MTR_1g063950	43.548	62	34	1	25	86	47	107	1.81e-12	58.9
MS.gene062940.t1	MTR_7g405740	38.667	75	45	1	12	86	53	126	3.94e-12	58.9
MS.gene062940.t1	MTR_3g105900	66.667	36	12	0	25	60	1171	1206	1.58e-11	58.9
MS.gene062940.t1	MTR_8g461210	48.148	54	27	1	25	78	34	86	2.05e-11	55.8
MS.gene062940.t1	MTR_2g066830	37.681	69	41	2	10	78	43	109	8.42e-11	55.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062940.t1	AT2G21210	52.083	96	42	2	1	92	1	96	6.60e-32	107
MS.gene062940.t1	AT4G38840	70.588	68	19	1	25	91	32	99	1.08e-31	107
MS.gene062940.t1	AT2G21210	52.083	96	42	2	1	92	68	163	3.05e-31	107
MS.gene062940.t1	AT5G18080	58.667	75	30	1	17	90	15	89	2.92e-29	100
MS.gene062940.t1	AT5G18020	56.000	75	32	1	17	90	15	89	7.36e-29	99.8
MS.gene062940.t1	AT3G03820	55.435	92	35	2	2	90	6	94	1.69e-28	99.0
MS.gene062940.t1	AT5G18060	64.615	65	22	1	27	90	25	89	3.32e-28	97.8
MS.gene062940.t1	AT5G18050	62.121	66	24	1	26	90	24	89	7.79e-28	97.1
MS.gene062940.t1	AT5G18030	62.121	66	24	1	26	90	22	87	1.91e-27	95.9
MS.gene062940.t1	AT2G21200	58.333	72	29	1	20	90	15	86	1.99e-27	95.9
MS.gene062940.t1	AT4G34770	65.714	70	22	1	25	92	34	103	2.51e-27	96.3
MS.gene062940.t1	AT5G18010	54.667	75	33	1	17	90	15	89	3.61e-27	95.5
MS.gene062940.t1	AT4G38850	60.294	68	24	1	26	90	21	88	4.14e-27	95.1
MS.gene062940.t1	AT4G38825	55.405	74	32	1	18	90	15	88	7.23e-27	94.7
MS.gene062940.t1	AT3G03840	59.155	71	27	1	22	90	23	93	1.09e-26	94.4
MS.gene062940.t1	AT4G34800	51.685	89	35	2	1	86	1	84	2.27e-26	93.6
MS.gene062940.t1	AT3G03850	62.121	66	23	1	27	90	26	91	4.26e-26	92.8
MS.gene062940.t1	AT4G34810	61.429	70	22	2	26	90	48	117	2.60e-25	91.7
MS.gene062940.t1	AT4G34790	65.079	63	20	1	26	86	39	101	4.58e-24	88.2
MS.gene062940.t1	AT3G03830	56.522	69	27	1	25	90	23	91	7.66e-24	87.0
MS.gene062940.t1	AT4G13790	49.315	73	35	1	20	90	19	91	1.07e-23	86.7
MS.gene062940.t1	AT4G34780	56.338	71	28	2	24	91	26	96	1.94e-22	84.0
MS.gene062940.t1	AT4G38860	50.000	86	40	1	8	90	19	104	3.02e-22	83.2
MS.gene062940.t1	AT1G75580	50.000	90	37	2	8	90	19	107	2.16e-21	81.3
MS.gene062940.t1	AT3G43120	62.712	59	21	1	25	83	78	135	8.52e-21	81.3
MS.gene062940.t1	AT2G21220	46.512	86	42	2	8	90	19	103	1.76e-20	79.0
MS.gene062940.t1	AT4G34760	53.731	67	30	1	24	90	41	106	3.91e-20	78.2
MS.gene062940.t1	AT5G20810	64.407	59	20	1	25	83	78	135	4.93e-20	79.3
MS.gene062940.t1	AT5G20810	64.407	59	20	1	25	83	78	135	8.91e-20	79.3
MS.gene062940.t1	AT2G18010	52.778	72	33	1	17	88	39	109	2.49e-19	76.3
MS.gene062940.t1	AT1G19830	55.224	67	29	1	24	90	46	111	4.61e-19	75.5
MS.gene062940.t1	AT2G16580	55.385	65	28	1	24	88	42	105	5.31e-19	75.1
MS.gene062940.t1	AT4G36110	50.685	73	35	1	16	88	30	101	2.48e-18	73.2
MS.gene062940.t1	AT5G66260	51.515	66	31	1	26	91	34	98	1.57e-15	66.2
MS.gene062940.t1	AT2G45210	40.260	77	42	2	19	92	72	147	5.98e-15	66.2
MS.gene062940.t1	AT4G12410	47.887	71	33	2	26	93	76	145	6.43e-15	65.9
MS.gene062940.t1	AT3G60690	44.286	70	35	2	26	92	88	156	1.00e-14	65.9
MS.gene062940.t1	AT2G46690	47.826	69	32	2	18	83	16	83	1.06e-14	64.7
MS.gene062940.t1	AT1G75590	49.296	71	31	2	13	83	33	98	1.83e-14	64.7
MS.gene062940.t1	AT3G51200	46.377	69	35	2	25	92	38	105	2.33e-14	63.2
MS.gene062940.t1	AT3G20220	54.237	59	25	2	26	83	47	104	6.39e-14	62.4
MS.gene062940.t1	AT2G37030	46.774	62	32	1	25	86	48	108	7.39e-14	62.4
MS.gene062940.t1	AT4G00880	57.377	61	23	2	25	83	27	86	7.62e-14	62.4
MS.gene062940.t1	AT5G10990	44.595	74	34	2	25	92	40	112	1.32e-13	62.4
MS.gene062940.t1	AT1G19840	47.297	74	34	2	10	83	29	97	1.43e-13	62.4
MS.gene062940.t1	AT4G22620	39.286	84	47	2	12	92	65	147	1.72e-13	62.4
MS.gene062940.t1	AT3G61900	44.000	75	38	2	12	83	16	89	5.42e-13	60.5
MS.gene062940.t1	AT4G34750	43.548	62	34	1	25	86	36	96	1.02e-12	60.1
MS.gene062940.t1	AT4G34750	43.548	62	34	1	25	86	36	96	1.02e-12	60.1
MS.gene062940.t1	AT4G31320	50.000	58	28	1	21	78	75	131	2.00e-12	60.1
MS.gene062940.t1	AT3G53250	41.096	73	38	2	14	86	41	108	2.80e-12	58.5
MS.gene062940.t1	AT5G53590	40.278	72	37	2	25	91	45	115	2.99e-12	58.9
MS.gene062940.t1	AT3G53250	41.096	73	38	2	14	86	72	139	4.28e-12	58.5
MS.gene062940.t1	AT2G24400	54.717	53	23	1	26	78	64	115	7.04e-12	58.5
MS.gene062940.t1	AT3G12830	45.312	64	30	2	15	78	43	101	3.89e-11	55.5
MS.gene062940.t1	AT4G09530	39.726	73	41	2	17	86	19	91	5.71e-11	54.7
MS.gene062940.t1	AT3G03847	52.830	53	23	2	34	86	80	130	9.90e-11	54.7

Find 19 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGTAGATTCTTGTGTTT+TGG	0.198943	4.2:-35667560	None:intergenic
CATCAAGCAGAAGAAGAATT+TGG	0.279041	4.2:+35667691	MS.gene062940:CDS
GATTGGTTCAAATATGATAC+TGG	0.391746	4.2:-35667649	None:intergenic
TAGACTGCGAGATAGCCTTT+TGG	0.432261	4.2:-35667595	None:intergenic
GTAATTCTTGAAACAATGAT+TGG	0.443034	4.2:-35667666	None:intergenic
ATTTGGATATGATCATCCTA+TGG	0.456415	4.2:+35667708	MS.gene062940:CDS
GGCTATCTCGCAGTCTATGT+TGG	0.463238	4.2:+35667601	MS.gene062940:CDS
AAGGGACTTGAAGTCCCAAA+AGG	0.558728	4.2:+35667580	MS.gene062940:CDS
TTTGGATATGATCATCCTAT+GGG	0.586077	4.2:+35667709	MS.gene062940:CDS
AAGAATTCTTCCTCGCCACA+AGG	0.598793	4.2:-35667745	None:intergenic
CTCTGATAAGCTTTGCTATG+CGG	0.610719	4.2:-35667525	None:intergenic
GGATATGATCATCCTATGGG+TGG	0.645721	4.2:+35667712	MS.gene062940:CDS
CAAAACACAAGAATCTACCA+AGG	0.648832	4.2:+35667561	MS.gene062940:CDS
TCTCACAATTCCTTGTGGCG+AGG	0.669649	4.2:+35667735	MS.gene062940:CDS
GGAATTGTGAGACCACCCAT+AGG	0.670166	4.2:-35667724	None:intergenic
GGTGGTCTCACAATTCCTTG+TGG	0.678348	4.2:+35667730	MS.gene062940:CDS
AAAACACAAGAATCTACCAA+GGG	0.681268	4.2:+35667562	MS.gene062940:CDS
ATGTTGGAGATAGAATGAGA+CGG	0.701447	4.2:+35667617	MS.gene062940:CDS
GCGCACTCAAGCGAGAACTG+AGG	0.739137	4.2:-35667771	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GTAATTCTTGAAACAATGAT+TGG	-	chr4.2:35667669-35667688	None:intergenic	25.0%
	AAAACACAAGAATCTACCAA+GGG	+	chr4.2:35667562-35667581	MS.gene062940:CDS	30.0%
	ATTTGGATATGATCATCCTA+TGG	+	chr4.2:35667708-35667727	MS.gene062940:CDS	30.0%
	TTTGGATATGATCATCCTAT+GGG	+	chr4.2:35667709-35667728	MS.gene062940:CDS	30.0%
!	GATTGGTTCAAATATGATAC+TGG	-	chr4.2:35667652-35667671	None:intergenic	30.0%
!!!	TCTTGTGTTTTGGAAAATGA+TGG	-	chr4.2:35667553-35667572	None:intergenic	30.0%
	ATGTTGGAGATAGAATGAGA+CGG	+	chr4.2:35667617-35667636	MS.gene062940:CDS	35.0%
	CAAAACACAAGAATCTACCA+AGG	+	chr4.2:35667561-35667580	MS.gene062940:CDS	35.0%
	CATCAAGCAGAAGAAGAATT+TGG	+	chr4.2:35667691-35667710	MS.gene062940:CDS	35.0%
!	CTTGGTAGATTCTTGTGTTT+TGG	-	chr4.2:35667563-35667582	None:intergenic	35.0%
!	CTCTGATAAGCTTTGCTATG+CGG	-	chr4.2:35667528-35667547	None:intergenic	40.0%
	AAGAATTCTTCCTCGCCACA+AGG	-	chr4.2:35667748-35667767	None:intergenic	45.0%
	AAGGGACTTGAAGTCCCAAA+AGG	+	chr4.2:35667580-35667599	MS.gene062940:CDS	45.0%
	GGATATGATCATCCTATGGG+TGG	+	chr4.2:35667712-35667731	MS.gene062940:CDS	45.0%
!	AGACTGCGAGATAGCCTTTT+GGG	-	chr4.2:35667597-35667616	None:intergenic	45.0%
!	TAGACTGCGAGATAGCCTTT+TGG	-	chr4.2:35667598-35667617	None:intergenic	45.0%
!!!	TTTTGGGACTTCAAGTCCCT+TGG	-	chr4.2:35667581-35667600	None:intergenic	45.0%
	GGAATTGTGAGACCACCCAT+AGG	-	chr4.2:35667727-35667746	None:intergenic	50.0%
	GGCTATCTCGCAGTCTATGT+TGG	+	chr4.2:35667601-35667620	MS.gene062940:CDS	50.0%
	GGTGGTCTCACAATTCCTTG+TGG	+	chr4.2:35667730-35667749	MS.gene062940:CDS	50.0%
	TCTCACAATTCCTTGTGGCG+AGG	+	chr4.2:35667735-35667754	MS.gene062940:CDS	50.0%
	GCGCACTCAAGCGAGAACTG+AGG	-	chr4.2:35667774-35667793	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35667517	35667798	35667517	ID=MS.gene062940
chr4.2	mRNA	35667517	35667798	35667517	ID=MS.gene062940.t1;Parent=MS.gene062940
chr4.2	exon	35667517	35667798	35667517	ID=MS.gene062940.t1.exon1;Parent=MS.gene062940.t1
chr4.2	CDS	35667517	35667798	35667517	ID=cds.MS.gene062940.t1;Parent=MS.gene062940.t1

Gene Sequence	>MS.gene062940 ATGGGTTTCCGCATAGCAAAGCTTATCAGAGTGCCATCATTTTCCAAAACACAAGAATCTACCAAGGGACTTGAAGTCCCAAAAGGCTATCTCGCAGTCTATGTTGGAGATAGAATGAGACGGTTTGTGATTCCAGTATCATATTTGAACCAATCATTGTTTCAAGAATTACTACATCAAGCAGAAGAAGAATTTGGATATGATCATCCTATGGGTGGTCTCACAATTCCTTGTGGCGAGGAAGAATTCTTAAACCTCAGTTCTCGCTTGAGTGCGCTGTAA
Protein sequence	>MS.gene062940.t1 MGFRIAKLIRVPSFSKTQESTKGLEVPKGYLAVYVGDRMRRFVIPVSYLNQSLFQELLHQAEEEFGYDHPMGGLTIPCGEEEFLNLSSRLSAL