AlfalfaGEDB | MS.gene31867

M. sativa cultivar XinJiangDaYe / MS.gene31867

KEGG: -
GO: -
PFAM: PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31867.t1	RHN77890.1	93.8	211	12	1	1	211	46	255	1.70E-110	408.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31867.t1	O04086	40.6	217	121	4	1	210	1	216	4.7e-37	156.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31867.t1	A0A072VGE1	93.8	211	12	1	1	211	1	210	1.2e-110	408.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene31867	-0.823064	1.69E-53	-1.69E-46
MS.gene049285	MS.gene31867	-0.800599	1.34E-48	-1.69E-46
MS.gene049320	MS.gene31867	-0.806742	7.09E-50	-1.69E-46
MS.gene049549	MS.gene31867	0.821285	4.38E-53	-1.69E-46
MS.gene049611	MS.gene31867	0.829174	5.97E-55	-1.69E-46
MS.gene049633	MS.gene31867	-0.800773	1.23E-48	-1.69E-46
MS.gene049634	MS.gene31867	0.837366	5.42E-57	-1.69E-46
MS.gene050095	MS.gene31867	0.805934	1.05E-49	-1.69E-46
MS.gene050170	MS.gene31867	-0.802255	6.12E-49	-1.69E-46
MS.gene050333	MS.gene31867	-0.805879	1.08E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31867.t1	MTR_1g029600	93.839	211	12	1	1	211	1	210	1.49e-145	404
MS.gene31867.t1	MTR_1g029610	76.555	209	49	0	1	209	1	209	1.17e-119	352
MS.gene31867.t1	MTR_8g088780	45.455	220	101	5	8	209	5	223	1.46e-52	178
MS.gene31867.t1	MTR_2g006910	43.458	214	109	5	6	209	6	217	7.45e-50	171
MS.gene31867.t1	MTR_2g006910	43.458	214	109	5	6	209	6	217	7.73e-50	171
MS.gene31867.t1	MTR_8g088760	38.500	200	110	6	18	205	17	215	1.33e-36	135
MS.gene31867.t1	MTR_4g076660	42.188	128	71	2	86	211	1	127	2.33e-29	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31867.t1	AT1G11050	42.188	192	104	4	25	210	26	216	6.36e-39	141

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Find 34 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAGGGACTAACGA+AGG	0.740560	1.4:-14686274	None:intergenic
AACAATGTTGTGTGTCAATT+GGG	0.477153	1.4:-14686111	None:intergenic
AAGAAGGGACTAACGAAGGT+TGG	0.536160	1.4:-14686270	None:intergenic
ACAAACAACTCAAGCTGCGC+AGG	0.551790	1.4:+14686319	MS.gene31867:CDS
AGAAGGAGTAGCTATGATAA+GGG	0.514017	1.4:-14686014	None:intergenic
AGTATACAACTAGCTGTAGC+AGG	0.563837	1.4:-14686568	None:intergenic
CAACAATGTTGTGTGTCAAT+TGG	0.393976	1.4:-14686112	None:intergenic
CAATCTCTTCTTAGTCTCTT+TGG	0.194083	1.4:+14686136	MS.gene31867:CDS
CAGAAGGAGTAGCTATGATA+AGG	0.380662	1.4:-14686015	None:intergenic
CATGATACTGCAGAAGCAGA+AGG	0.601540	1.4:-14686031	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATTGGAAGCAAAAAGT+TGG	+	chr1.4:14686355-14686374	MS.gene31867:CDS	30.0%
AACAATGTTGTGTGTCAATT+GGG	-	chr1.4:14686114-14686133	None:intergenic	30.0%
GTATCACAAACATCAAAGAT+TGG	+	chr1.4:14686341-14686360	MS.gene31867:CDS	30.0%
AGAAGGAGTAGCTATGATAA+GGG	-	chr1.4:14686017-14686036	None:intergenic	35.0%
CAACAATGTTGTGTGTCAAT+TGG	-	chr1.4:14686115-14686134	None:intergenic	35.0%
CAATCTCTTCTTAGTCTCTT+TGG	+	chr1.4:14686136-14686155	MS.gene31867:CDS	35.0%
CCTTTAGACACTTCTTGTAA+AGG	+	chr1.4:14686388-14686407	MS.gene31867:CDS	35.0%
GAAAGAGTGAAGTTTCTTTC+AGG	-	chr1.4:14686180-14686199	None:intergenic	35.0%
AAACAAGAAGGGACTAACGA+AGG	-	chr1.4:14686277-14686296	None:intergenic	40.0%
AGTATACAACTAGCTGTAGC+AGG	-	chr1.4:14686571-14686590	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	14685977	14686612	14685977	ID=MS.gene31867
chr1.4	mRNA	14685977	14686612	14685977	ID=MS.gene31867.t1;Parent=MS.gene31867
chr1.4	exon	14685977	14686612	14685977	ID=MS.gene31867.t1.exon1;Parent=MS.gene31867.t1
chr1.4	CDS	14685977	14686612	14685977	ID=cds.MS.gene31867.t1;Parent=MS.gene31867.t1

Gene Sequence

>MS.gene31867

ATGGATAACAAAGCAATGTTCCTTCTCCTCCTCTTCACCCTTATCATAGCTACTCCTTCTGCTTCTGCAGTATCATGTCCTATGGATCTCAGCTATGTTGAGACCTTTCCATGGGACACATCAACCTGCAGAGACCCAATTGACACACAACATTGTTGTCAATCTCTTCTTAGTCTCTTTGGCATAGGACTTGCAAAACACCTGAAAGAAACTTCACTCTTTCAACTCCCTAATAAAAACACTTTAAAATCTTGCTTACAAGATTTCAAACTCAAACTTTCATGCTCAAAGATCCAACCTTCGTTAGTCCCTTCTTGTTTCCACAACTCAACTCAATTTGTCACAAACAACTCAAGCTGCGCAGGTATCACAAACATCAAAGATTGGAAGCAAAAAGTTGGTAGAATTAGCCCTTTAGACACTTCTTGTAAAGGTGATTTGAAATCGGACACTAGTTGCAGCACGTGCACTAATGCTGGTTTCAAAGTCACTTCTCAGCTTACAAGTATTGATCCAAAAAATGCAACTAAGTGCTTTTTCTTTTCAGTTTTATATGCTGTTGGTATTGTGAATCATTTTGGTCCTACAGATCCTGCTACAGCTAGTTGTATACTTGGTATCCCACTTAGAAGATGA

Protein sequence

>MS.gene31867.t1

MDNKAMFLLLLFTLIIATPSASAVSCPMDLSYVETFPWDTSTCRDPIDTQHCCQSLLSLFGIGLAKHLKETSLFQLPNKNTLKSCLQDFKLKLSCSKIQPSLVPSCFHNSTQFVTNNSSCAGITNIKDWKQKVGRISPLDTSCKGDLKSDTSCSTCTNAGFKVTSQLTSIDPKNATKCFFFSVLYAVGIVNHFGPTDPATASCILGIPLRR