Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34188.t1 | XP_013450807.1 | 99.1 | 116 | 1 | 0 | 1 | 116 | 79 | 194 | 1.60E-57 | 231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34188.t1 | Q9M3C6 | 73.3 | 116 | 27 | 1 | 1 | 116 | 60 | 171 | 8.6e-44 | 177.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34188.t1 | A0A072U5C5 | 99.1 | 116 | 1 | 0 | 1 | 116 | 79 | 194 | 1.2e-57 | 231.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene34188 | 0.824606 | 7.37E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene34188 | 0.823713 | 1.19E-53 | -1.69E-46 |
| MS.gene049170 | MS.gene34188 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene34188 | 0.862277 | 5.68E-64 | -1.69E-46 |
| MS.gene049369 | MS.gene34188 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene34188 | 0.817778 | 2.76E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene34188 | 0.822552 | 2.23E-53 | -1.69E-46 |
| MS.gene049757 | MS.gene34188 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene34188 | 0.811541 | 6.65E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene34188 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene34188 | 0.815971 | 7.03E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene34188 | 0.84477 | 6.15E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene34188 | 0.844885 | 5.73E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene34188 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene34188 | 0.826915 | 2.09E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene34188 | -0.84923 | 3.69E-60 | -1.69E-46 |
| MS.gene050464 | MS.gene34188 | 0.823782 | 1.15E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene34188 | 0.853085 | 3.02E-61 | -1.69E-46 |
| MS.gene050670 | MS.gene34188 | 0.898847 | 3.55E-77 | -1.69E-46 |
| MS.gene050812 | MS.gene34188 | 0.82723 | 1.75E-54 | -1.69E-46 |
| MS.gene050971 | MS.gene34188 | 0.819579 | 1.08E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene34188 | 0.846456 | 2.15E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene34188 | 0.815671 | 8.20E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene34188 | 0.83877 | 2.36E-57 | -1.69E-46 |
| MS.gene051605 | MS.gene34188 | 0.819276 | 1.26E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene34188 | 0.826492 | 2.63E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene34188 | 0.812064 | 5.12E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene34188 | -0.817787 | 2.75E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene34188 | 0.840053 | 1.10E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene34188 | 0.801384 | 9.24E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene34188 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene34188 | 0.91959 | 3.72E-87 | -1.69E-46 |
| MS.gene052253 | MS.gene34188 | 0.86464 | 1.05E-64 | -1.69E-46 |
| MS.gene052310 | MS.gene34188 | 0.866294 | 3.17E-65 | -1.69E-46 |
| MS.gene052322 | MS.gene34188 | 0.803654 | 3.14E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene34188 | 0.898052 | 7.74E-77 | -1.69E-46 |
| MS.gene052414 | MS.gene34188 | 0.856257 | 3.64E-62 | -1.69E-46 |
| MS.gene052421 | MS.gene34188 | 0.815277 | 1.00E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene34188 | 0.816925 | 4.30E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene34188 | 0.856421 | 3.26E-62 | -1.69E-46 |
| MS.gene052758 | MS.gene34188 | 0.803796 | 2.94E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene34188 | 0.813618 | 2.34E-51 | -1.69E-46 |
| MS.gene053169 | MS.gene34188 | 0.801424 | 9.06E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene34188 | 0.857516 | 1.55E-62 | -1.69E-46 |
| MS.gene053209 | MS.gene34188 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene34188 | 0.842745 | 2.14E-58 | -1.69E-46 |
| MS.gene053758 | MS.gene34188 | 0.819166 | 1.34E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene34188 | 0.825509 | 4.51E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene34188 | 0.82548 | 4.58E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene34188 | 0.820002 | 8.63E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene34188 | 0.849016 | 4.24E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene34188 | 0.838152 | 3.41E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene34188 | 0.873758 | 1.15E-67 | -1.69E-46 |
| MS.gene054556 | MS.gene34188 | 0.825909 | 3.62E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene34188 | 0.81595 | 7.11E-52 | -1.69E-46 |
| MS.gene054955 | MS.gene34188 | 0.800905 | 1.16E-48 | -1.69E-46 |
| MS.gene055116 | MS.gene34188 | 0.895374 | 1.02E-75 | -1.69E-46 |
| MS.gene055369 | MS.gene34188 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene34188 | 0.810744 | 9.90E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene34188 | 0.851033 | 1.16E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene34188 | 0.862706 | 4.19E-64 | -1.69E-46 |
| MS.gene055604 | MS.gene34188 | 0.809684 | 1.68E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene34188 | 0.815197 | 1.05E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene34188 | 0.830741 | 2.48E-55 | -1.69E-46 |
| MS.gene055911 | MS.gene34188 | 0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene056233 | MS.gene34188 | 0.818827 | 1.60E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene34188 | 0.852956 | 3.28E-61 | -1.69E-46 |
| MS.gene056511 | MS.gene34188 | 0.843923 | 1.04E-58 | -1.69E-46 |
| MS.gene056514 | MS.gene34188 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene34188 | 0.81298 | 3.23E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene34188 | 0.80626 | 8.97E-50 | -1.69E-46 |
| MS.gene05664 | MS.gene34188 | 0.811923 | 5.49E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene34188 | 0.856272 | 3.60E-62 | -1.69E-46 |
| MS.gene056719 | MS.gene34188 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene056723 | MS.gene34188 | 0.867752 | 1.09E-65 | -1.69E-46 |
| MS.gene056899 | MS.gene34188 | -0.840566 | 8.05E-58 | -1.69E-46 |
| MS.gene05702 | MS.gene34188 | 0.838915 | 2.16E-57 | -1.69E-46 |
| MS.gene057124 | MS.gene34188 | 0.863482 | 2.41E-64 | -1.69E-46 |
| MS.gene057396 | MS.gene34188 | 0.893887 | 4.13E-75 | -1.69E-46 |
| MS.gene057448 | MS.gene34188 | 0.867588 | 1.23E-65 | -1.69E-46 |
| MS.gene057449 | MS.gene34188 | 0.858401 | 8.45E-63 | -1.69E-46 |
| MS.gene057450 | MS.gene34188 | 0.861933 | 7.24E-64 | -1.69E-46 |
| MS.gene057537 | MS.gene34188 | 0.860534 | 1.93E-63 | -1.69E-46 |
| MS.gene057734 | MS.gene34188 | 0.811018 | 8.64E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene34188 | 0.859364 | 4.35E-63 | -1.69E-46 |
| MS.gene057823 | MS.gene34188 | 0.850508 | 1.62E-60 | -1.69E-46 |
| MS.gene057825 | MS.gene34188 | 0.83528 | 1.84E-56 | -1.69E-46 |
| MS.gene057927 | MS.gene34188 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene34188 | 0.849439 | 3.23E-60 | -1.69E-46 |
| MS.gene058007 | MS.gene34188 | 0.855739 | 5.15E-62 | -1.69E-46 |
| MS.gene058082 | MS.gene34188 | 0.823386 | 1.42E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene34188 | 0.810341 | 1.21E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene34188 | 0.828613 | 8.16E-55 | -1.69E-46 |
| MS.gene058276 | MS.gene34188 | 0.800621 | 1.32E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene34188 | 0.814061 | 1.87E-51 | -1.69E-46 |
| MS.gene058365 | MS.gene34188 | 0.842303 | 2.81E-58 | -1.69E-46 |
| MS.gene058376 | MS.gene34188 | 0.809283 | 2.04E-50 | -1.69E-46 |
| MS.gene058444 | MS.gene34188 | 0.807282 | 5.45E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene34188 | 0.836478 | 9.14E-57 | -1.69E-46 |
| MS.gene058700 | MS.gene34188 | 0.822993 | 1.76E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene34188 | 0.813823 | 2.11E-51 | -1.69E-46 |
| MS.gene058787 | MS.gene34188 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene34188 | 0.884296 | 2.16E-71 | -1.69E-46 |
| MS.gene058948 | MS.gene34188 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene34188 | 0.840113 | 1.06E-57 | -1.69E-46 |
| MS.gene059011 | MS.gene34188 | 0.856766 | 2.58E-62 | -1.69E-46 |
| MS.gene05907 | MS.gene34188 | 0.844338 | 8.04E-59 | -1.69E-46 |
| MS.gene059082 | MS.gene34188 | 0.804446 | 2.15E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene34188 | 0.831385 | 1.72E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene34188 | 0.858512 | 7.83E-63 | -1.69E-46 |
| MS.gene059294 | MS.gene34188 | 0.836163 | 1.10E-56 | -1.69E-46 |
| MS.gene059366 | MS.gene34188 | 0.851462 | 8.74E-61 | -1.69E-46 |
| MS.gene059420 | MS.gene34188 | 0.868583 | 5.86E-66 | -1.69E-46 |
| MS.gene059462 | MS.gene34188 | 0.818029 | 2.43E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene34188 | 0.844811 | 6.00E-59 | -1.69E-46 |
| MS.gene05959 | MS.gene34188 | 0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene34188 | 0.839919 | 1.19E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene34188 | 0.884614 | 1.65E-71 | -1.69E-46 |
| MS.gene059692 | MS.gene34188 | 0.874471 | 6.58E-68 | -1.69E-46 |
| MS.gene059695 | MS.gene34188 | 0.875742 | 2.42E-68 | -1.69E-46 |
| MS.gene059788 | MS.gene34188 | 0.825098 | 5.64E-54 | -1.69E-46 |
| MS.gene059807 | MS.gene34188 | 0.868588 | 5.84E-66 | -1.69E-46 |
| MS.gene05984 | MS.gene34188 | 0.842852 | 2.01E-58 | -1.69E-46 |
| MS.gene059876 | MS.gene34188 | 0.802305 | 5.97E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene34188 | 0.828284 | 9.79E-55 | -1.69E-46 |
| MS.gene060247 | MS.gene34188 | 0.832451 | 9.38E-56 | -1.69E-46 |
| MS.gene060403 | MS.gene34188 | 0.854809 | 9.61E-62 | -1.69E-46 |
| MS.gene060407 | MS.gene34188 | 0.827661 | 1.38E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene34188 | 0.827094 | 1.89E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene34188 | 0.804545 | 2.05E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene34188 | 0.809639 | 1.71E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene34188 | 0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene34188 | 0.865214 | 6.94E-65 | -1.69E-46 |
| MS.gene061051 | MS.gene34188 | -0.862835 | 3.82E-64 | -1.69E-46 |
| MS.gene061154 | MS.gene34188 | 0.846228 | 2.48E-59 | -1.69E-46 |
| MS.gene061159 | MS.gene34188 | 0.848305 | 6.67E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAAAACTGAGGAGATTT+TGG | 0.193705 | 6.2:+2730401 | MS.gene34188:CDS |
| AATGTTGTTAGCAAAGTTAT+TGG | 0.287367 | 6.2:+2728396 | None:intergenic |
| TGCTGTTGGCTAGCAGCTAT+TGG | 0.344544 | 6.2:+2730369 | MS.gene34188:CDS |
| ATTGGTGCTCTTCCTGTTGT+TGG | 0.376523 | 6.2:+2728414 | MS.gene34188:CDS |
| TGGAAGGAGTCGGAAGGCTT+CGG | 0.426849 | 6.2:+2730421 | MS.gene34188:CDS |
| GTGTAGGCAGGGGATCAGGC+AGG | 0.438193 | 6.2:+2730324 | MS.gene34188:intron |
| CAGCATAGCAGAACATAGAT+AGG | 0.443607 | 6.2:-2730351 | None:intergenic |
| GCTAGGATTATGAGTGATGA+AGG | 0.474789 | 6.2:+2728444 | MS.gene34188:CDS |
| CTAAGTAAAGCTTTCAGAGA+TGG | 0.494163 | 6.2:-2730515 | None:intergenic |
| CTCTCTTGCTTCATCCATCA+TGG | 0.504937 | 6.2:-2730484 | None:intergenic |
| TGGCTAGCAGCTATTGGTGC+AGG | 0.509243 | 6.2:+2730375 | MS.gene34188:CDS |
| ATGAGTGATGAAGGTGGTGT+TGG | 0.509665 | 6.2:+2728453 | MS.gene34188:CDS |
| CTAGCTAAAAGACCAACAAC+AGG | 0.516749 | 6.2:-2728426 | None:intergenic |
| GCTGAGTTTAGAAGAAGGGT+TGG | 0.525341 | 6.2:+2728495 | MS.gene34188:CDS |
| TTCATCCATCATGGCTATGA+AGG | 0.528276 | 6.2:-2730475 | None:intergenic |
| ATGGATGAAGCAAGAGAGGT+TGG | 0.532240 | 6.2:+2730489 | MS.gene34188:CDS |
| TCTATGTTCTGCTATGCTGT+TGG | 0.533155 | 6.2:+2730355 | MS.gene34188:CDS |
| GTAGGCAGGGGATCAGGCAG+GGG | 0.537786 | 6.2:+2730326 | MS.gene34188:intron |
| TGTAGGCAGGGGATCAGGCA+GGG | 0.550820 | 6.2:+2730325 | MS.gene34188:intron |
| TATCAGTTTCAAGCAAGAAG+AGG | 0.555632 | 6.2:+2728552 | MS.gene34188:CDS |
| AGTTTCAAGCAAGAAGAGGA+AGG | 0.571685 | 6.2:+2728556 | MS.gene34188:CDS |
| ACAGACCTTCATAGCCATGA+TGG | 0.577761 | 6.2:+2730470 | MS.gene34188:CDS |
| GTTTCAAGCAAGAAGAGGAA+GGG | 0.598303 | 6.2:+2728557 | MS.gene34188:CDS |
| CATGATGGATGAAGCAAGAG+AGG | 0.615451 | 6.2:+2730485 | MS.gene34188:CDS |
| TGCAGGTCTTCTCAAAACTG+AGG | 0.678847 | 6.2:+2730392 | MS.gene34188:CDS |
| AGGATTATGAGTGATGAAGG+TGG | 0.737229 | 6.2:+2728447 | MS.gene34188:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGCAAAATTTAATAAA+AGG | - | chr6.2:2728605-2728624 | None:intergenic | 10.0% |
| !! | AAATGCAAAATTTAATAAAA+GGG | - | chr6.2:2728604-2728623 | None:intergenic | 10.0% |
| !!! | TTATTAAATTTTGCATTTTT+TGG | + | chr6.2:2728606-2728625 | MS.gene34188:intron | 10.0% |
| !! | TATAGTTAAATACTTAAATG+AGG | + | chr6.2:2730004-2730023 | MS.gene34188:intron | 15.0% |
| !! | TTAGTAAAATTAGAGTTTAA+TGG | - | chr6.2:2729078-2729097 | None:intergenic | 15.0% |
| !!! | CATTTTCTCATAAAATTATA+AGG | - | chr6.2:2728891-2728910 | None:intergenic | 15.0% |
| !! | AAAGATTCATATTTGATTGT+GGG | - | chr6.2:2730095-2730114 | None:intergenic | 20.0% |
| !! | AATCAAATATGAATCTTTCT+TGG | + | chr6.2:2730097-2730116 | MS.gene34188:intron | 20.0% |
| !! | ATCAAATATGAATCTTTCTT+GGG | + | chr6.2:2730098-2730117 | MS.gene34188:intron | 20.0% |
| !! | GATAATTAGAATATCAAATC+CGG | - | chr6.2:2729775-2729794 | None:intergenic | 20.0% |
| !! | GCAATCTTATAATTTGATTA+AGG | + | chr6.2:2729913-2729932 | MS.gene34188:intron | 20.0% |
| !! | GTTGTAATCTAATACTTAAA+GGG | + | chr6.2:2728992-2729011 | MS.gene34188:intron | 20.0% |
| !! | TCATTTCTCATAAAATAACA+AGG | - | chr6.2:2728695-2728714 | None:intergenic | 20.0% |
| !! | TCTTATAATTTGATTAAGGT+TGG | + | chr6.2:2729917-2729936 | MS.gene34188:intron | 20.0% |
| !! | TGTTGTAATCTAATACTTAA+AGG | + | chr6.2:2728991-2729010 | MS.gene34188:intron | 20.0% |
| !! | TTCAAATAGAAATGAGAATT+GGG | + | chr6.2:2728950-2728969 | MS.gene34188:intron | 20.0% |
| !! | TTCTTATAGTTCAATTTATG+AGG | + | chr6.2:2729862-2729881 | MS.gene34188:intron | 20.0% |
| !!! | AAAATTGATTCTAACTAGTT+TGG | - | chr6.2:2729344-2729363 | None:intergenic | 20.0% |
| !!! | ACTAATGTAATTTTGCATTT+TGG | + | chr6.2:2729093-2729112 | MS.gene34188:intron | 20.0% |
| !!! | CTAATGTAATTTTGCATTTT+GGG | + | chr6.2:2729094-2729113 | MS.gene34188:intron | 20.0% |
| !!! | TAAACAATTCATCACTTTTA+AGG | - | chr6.2:2730064-2730083 | None:intergenic | 20.0% |
| !!! | TTGATAAATGTTGCATTTTT+TGG | + | chr6.2:2728803-2728822 | MS.gene34188:intron | 20.0% |
| ! | AAGATTCATATTTGATTGTG+GGG | - | chr6.2:2730094-2730113 | None:intergenic | 25.0% |
| ! | AAGCTTCAAAATTTGATCAT+GGG | - | chr6.2:2729835-2729854 | None:intergenic | 25.0% |
| ! | AATCTACCTCAAGAATAAAA+AGG | - | chr6.2:2730219-2730238 | None:intergenic | 25.0% |
| ! | AATGTAAAGTGAGTTATGTT+TGG | + | chr6.2:2729189-2729208 | MS.gene34188:intron | 25.0% |
| ! | GAAAGATTCATATTTGATTG+TGG | - | chr6.2:2730096-2730115 | None:intergenic | 25.0% |
| ! | GCAACATTTATCAAATCATA+AGG | - | chr6.2:2728797-2728816 | None:intergenic | 25.0% |
| ! | GTAAAATTAGAGTTTAATGG+AGG | - | chr6.2:2729075-2729094 | None:intergenic | 25.0% |
| ! | GTTCAAATAGAAATGAGAAT+TGG | + | chr6.2:2728949-2728968 | MS.gene34188:intron | 25.0% |
| ! | TTCAGTGTAAACTTATAAAC+TGG | + | chr6.2:2729592-2729611 | MS.gene34188:intron | 25.0% |
| ! | TTCATGTGCTAAAATAGAAA+TGG | + | chr6.2:2730260-2730279 | MS.gene34188:intron | 25.0% |
| !! | TCTTTTCCTTTTTATTCTTG+AGG | + | chr6.2:2730210-2730229 | MS.gene34188:intron | 25.0% |
| !! | TTGATGATATTCGCTAATAA+GGG | + | chr6.2:2729495-2729514 | MS.gene34188:intron | 25.0% |
| !!! | AAATTGATTTTGGTTGATTC+TGG | + | chr6.2:2729152-2729171 | MS.gene34188:intron | 25.0% |
| !!! | GAGTTGACAAAAATTGATTT+TGG | + | chr6.2:2729142-2729161 | MS.gene34188:intron | 25.0% |
| !!! | TATTTTTTGACTTGTGAAGT+TGG | + | chr6.2:2728837-2728856 | MS.gene34188:intron | 25.0% |
| !!! | TTCTGAAGTAAGAAGATAAA+TGG | - | chr6.2:2729752-2729771 | None:intergenic | 25.0% |
| AACATGAAATTAACCTCAAG+AGG | - | chr6.2:2728755-2728774 | None:intergenic | 30.0% | |
| AATGTCCAAATTTGATCATG+GGG | - | chr6.2:2729978-2729997 | None:intergenic | 30.0% | |
| ACAATGTCCAAATTTGATCA+TGG | - | chr6.2:2729980-2729999 | None:intergenic | 30.0% | |
| ACCTTAATCAGACAACTATA+AGG | - | chr6.2:2729432-2729451 | None:intergenic | 30.0% | |
| ACCTTATAGTTGTCTGATTA+AGG | + | chr6.2:2729428-2729447 | MS.gene34188:intron | 30.0% | |
| AGCTTCAAAATTTGATCATG+GGG | - | chr6.2:2729834-2729853 | None:intergenic | 30.0% | |
| ATCATCAACCATAATCAACA+GGG | - | chr6.2:2729483-2729502 | None:intergenic | 30.0% | |
| ATTTGATTAAGGTTGGCATT+TGG | + | chr6.2:2729924-2729943 | MS.gene34188:intron | 30.0% | |
| CAACTATTGATCACAGAATT+TGG | - | chr6.2:2729720-2729739 | None:intergenic | 30.0% | |
| CAAGCTTCAAAATTTGATCA+TGG | - | chr6.2:2729836-2729855 | None:intergenic | 30.0% | |
| CAATGTCCAAATTTGATCAT+GGG | - | chr6.2:2729979-2729998 | None:intergenic | 30.0% | |
| CTAGTTTGAGTGATTTCATT+CGG | + | chr6.2:2730142-2730161 | MS.gene34188:intron | 30.0% | |
| GTGTGTTAGAATATCAAATC+TGG | - | chr6.2:2729812-2729831 | None:intergenic | 30.0% | |
| TATCATCAACCATAATCAAC+AGG | - | chr6.2:2729484-2729503 | None:intergenic | 30.0% | |
| TGATGATATTCGCTAATAAG+GGG | + | chr6.2:2729496-2729515 | MS.gene34188:intron | 30.0% | |
| TTATCTTCTTACTTCAGAAC+CGG | + | chr6.2:2729753-2729772 | MS.gene34188:intron | 30.0% | |
| ! | ATTTTGCTGAGTTTAGAAGA+AGG | + | chr6.2:2728490-2728509 | MS.gene34188:CDS | 30.0% |
| ! | CACTCTTCTGTTTGAAATAT+AGG | + | chr6.2:2729685-2729704 | MS.gene34188:intron | 30.0% |
| ! | GGGATTTAAAGTTGTCAAAT+GGG | + | chr6.2:2730118-2730137 | MS.gene34188:intron | 30.0% |
| ! | GTTACAATTTTTACCTCTTG+AGG | + | chr6.2:2728739-2728758 | MS.gene34188:intron | 30.0% |
| ! | GTTTGAAATATAGGCACAAT+TGG | + | chr6.2:2729694-2729713 | MS.gene34188:intron | 30.0% |
| ! | TACACTTGCAAAGTCAATTT+TGG | + | chr6.2:2729363-2729382 | MS.gene34188:intron | 30.0% |
| ! | TATTCTTGAGGTAGATTTTG+TGG | + | chr6.2:2730222-2730241 | MS.gene34188:intron | 30.0% |
| ! | TGGGATTTAAAGTTGTCAAA+TGG | + | chr6.2:2730117-2730136 | MS.gene34188:intron | 30.0% |
| ! | TTTTGCTGAGTTTAGAAGAA+GGG | + | chr6.2:2728491-2728510 | MS.gene34188:CDS | 30.0% |
| !! | ATTAGCCTTCATTCATTGTA+AGG | - | chr6.2:2730182-2730201 | None:intergenic | 30.0% |
| !! | GTTGATGATATTCGCTAATA+AGG | + | chr6.2:2729494-2729513 | MS.gene34188:intron | 30.0% |
| !!! | CTTTTTTTTACTTGTGAGGT+TGG | + | chr6.2:2728641-2728660 | MS.gene34188:intron | 30.0% |
| !!! | GTTGCTTTTTTTTACTTGTG+AGG | + | chr6.2:2728637-2728656 | MS.gene34188:intron | 30.0% |
| AATGATACCTGACTAACGAA+TGG | - | chr6.2:2729523-2729542 | None:intergenic | 35.0% | |
| AGTGACTTGAGCAACAAATT+TGG | + | chr6.2:2729227-2729246 | MS.gene34188:intron | 35.0% | |
| ATTCATATTTGATTGTGGGG+TGG | - | chr6.2:2730091-2730110 | None:intergenic | 35.0% | |
| CGTTAGTCAGGTATCATTTA+GGG | + | chr6.2:2729525-2729544 | MS.gene34188:intron | 35.0% | |
| GATGCGAATTTATTGGATGA+CGG | + | chr6.2:2729021-2729040 | MS.gene34188:intron | 35.0% | |
| GCAAGATGATGCGAATTTAT+TGG | + | chr6.2:2729014-2729033 | MS.gene34188:intron | 35.0% | |
| GTGACTTGAGCAACAAATTT+GGG | + | chr6.2:2729228-2729247 | MS.gene34188:intron | 35.0% | |
| GTTAGTCAGGTATCATTTAG+GGG | + | chr6.2:2729526-2729545 | MS.gene34188:intron | 35.0% | |
| TATCAGTTTCAAGCAAGAAG+AGG | + | chr6.2:2728552-2728571 | MS.gene34188:CDS | 35.0% | |
| TCCAACCTTACAATGAATGA+AGG | + | chr6.2:2730174-2730193 | MS.gene34188:intron | 35.0% | |
| TCGTTAGTCAGGTATCATTT+AGG | + | chr6.2:2729524-2729543 | MS.gene34188:intron | 35.0% | |
| ! | AAAACTGAGGAGATTTTGGA+AGG | + | chr6.2:2730405-2730424 | MS.gene34188:CDS | 35.0% |
| ! | TCTCAAAACTGAGGAGATTT+TGG | + | chr6.2:2730401-2730420 | MS.gene34188:CDS | 35.0% |
| !! | GCAAAGTCAATTTTGGTCAT+CGG | + | chr6.2:2729370-2729389 | MS.gene34188:intron | 35.0% |
| !!! | GGTGTTTGTTTGTTTTGTGT+AGG | + | chr6.2:2730308-2730327 | MS.gene34188:intron | 35.0% |
| !!! | GGTTTTCTAAAGTGCATGTT+TGG | + | chr6.2:2729115-2729134 | MS.gene34188:intron | 35.0% |
| !!! | TTGTTTGTTTTGTGTAGGCA+GGG | + | chr6.2:2730313-2730332 | MS.gene34188:intron | 35.0% |
| !!! | TTTGTTTGTTTTGTGTAGGC+AGG | + | chr6.2:2730312-2730331 | MS.gene34188:intron | 35.0% |
| AGGATTATGAGTGATGAAGG+TGG | + | chr6.2:2728447-2728466 | MS.gene34188:CDS | 40.0% | |
| AGTTTCAAGCAAGAAGAGGA+AGG | + | chr6.2:2728556-2728575 | MS.gene34188:CDS | 40.0% | |
| ATCAACCATAATCAACAGGG+TGG | - | chr6.2:2729480-2729499 | None:intergenic | 40.0% | |
| CAGCATAGCAGAACATAGAT+AGG | - | chr6.2:2730354-2730373 | None:intergenic | 40.0% | |
| CTAGCTAAAAGACCAACAAC+AGG | - | chr6.2:2728429-2728448 | None:intergenic | 40.0% | |
| GCCTTCATTCATTGTAAGGT+TGG | - | chr6.2:2730178-2730197 | None:intergenic | 40.0% | |
| GCTAGGATTATGAGTGATGA+AGG | + | chr6.2:2728444-2728463 | MS.gene34188:CDS | 40.0% | |
| GTCTAAACGTGTGTCTAACT+TGG | + | chr6.2:2730287-2730306 | MS.gene34188:intron | 40.0% | |
| GTTTCAAGCAAGAAGAGGAA+GGG | + | chr6.2:2728557-2728576 | MS.gene34188:CDS | 40.0% | |
| TACCACCCCATGATCAAATT+TGG | + | chr6.2:2729970-2729989 | MS.gene34188:intron | 40.0% | |
| TCTATGTTCTGCTATGCTGT+TGG | + | chr6.2:2730355-2730374 | MS.gene34188:CDS | 40.0% | |
| TTCATCCATCATGGCTATGA+AGG | - | chr6.2:2730478-2730497 | None:intergenic | 40.0% | |
| ! | GAGGTAGATTTTGTGGTAGA+AGG | + | chr6.2:2730229-2730248 | MS.gene34188:intron | 40.0% |
| ! | GTTTAATGGAGGTGCAATCA+TGG | - | chr6.2:2729064-2729083 | None:intergenic | 40.0% |
| !!! | CTGTTGTTGGTCTTTTAGCT+AGG | + | chr6.2:2728427-2728446 | MS.gene34188:CDS | 40.0% |
| !!! | TGTTTGTTTTGTGTAGGCAG+GGG | + | chr6.2:2730314-2730333 | MS.gene34188:intron | 40.0% |
| ACAGACCTTCATAGCCATGA+TGG | + | chr6.2:2730470-2730489 | MS.gene34188:CDS | 45.0% | |
| AGTCAGGTATCATTTAGGGG+TGG | + | chr6.2:2729529-2729548 | MS.gene34188:intron | 45.0% | |
| ATGAGTGATGAAGGTGGTGT+TGG | + | chr6.2:2728453-2728472 | MS.gene34188:CDS | 45.0% | |
| ATGGATGAAGCAAGAGAGGT+TGG | + | chr6.2:2730489-2730508 | MS.gene34188:CDS | 45.0% | |
| CTCTCTTGCTTCATCCATCA+TGG | - | chr6.2:2730487-2730506 | None:intergenic | 45.0% | |
| GCTGAGTTTAGAAGAAGGGT+TGG | + | chr6.2:2728495-2728514 | MS.gene34188:CDS | 45.0% | |
| GTCAGGTATCATTTAGGGGT+GGG | + | chr6.2:2729530-2729549 | MS.gene34188:intron | 45.0% | |
| GTCCAAATTTGATCATGGGG+TGG | - | chr6.2:2729975-2729994 | None:intergenic | 45.0% | |
| TCAGGTATCATTTAGGGGTG+GGG | + | chr6.2:2729531-2729550 | MS.gene34188:intron | 45.0% | |
| TGCAGGTCTTCTCAAAACTG+AGG | + | chr6.2:2730392-2730411 | MS.gene34188:CDS | 45.0% | |
| ! | ATTGGTGCTCTTCCTGTTGT+TGG | + | chr6.2:2728414-2728433 | MS.gene34188:CDS | 45.0% |
| !! | AGATTTTGGAAGGAGTCGGA+AGG | + | chr6.2:2730415-2730434 | MS.gene34188:CDS | 45.0% |
| !! | CATGATGGATGAAGCAAGAG+AGG | + | chr6.2:2730485-2730504 | MS.gene34188:CDS | 45.0% |
| !! | GAGGAGATTTTGGAAGGAGT+CGG | + | chr6.2:2730411-2730430 | MS.gene34188:CDS | 45.0% |
| AAGGGGTCCATTCGTTAGTC+AGG | + | chr6.2:2729513-2729532 | MS.gene34188:intron | 50.0% | |
| AGGTATCATTTAGGGGTGGG+GGG | + | chr6.2:2729533-2729552 | MS.gene34188:intron | 50.0% | |
| CAGGTATCATTTAGGGGTGG+GGG | + | chr6.2:2729532-2729551 | MS.gene34188:intron | 50.0% | |
| TTACACTGAACCGTTCCGCA+GGG | - | chr6.2:2729582-2729601 | None:intergenic | 50.0% | |
| TTTACACTGAACCGTTCCGC+AGG | - | chr6.2:2729583-2729602 | None:intergenic | 50.0% | |
| ! | AGCTGCCACCCTGTTGATTA+TGG | + | chr6.2:2729472-2729491 | MS.gene34188:intron | 50.0% |
| ! | TGCTGTTGGCTAGCAGCTAT+TGG | + | chr6.2:2730369-2730388 | MS.gene34188:CDS | 50.0% |
| ! | TTTTGTGTAGGCAGGGGATC+AGG | + | chr6.2:2730320-2730339 | MS.gene34188:intron | 50.0% |
| GGTATCATTTAGGGGTGGGG+GGG | + | chr6.2:2729534-2729553 | MS.gene34188:intron | 55.0% | |
| TGGAAGGAGTCGGAAGGCTT+CGG | + | chr6.2:2730421-2730440 | MS.gene34188:CDS | 55.0% | |
| TGGCTAGCAGCTATTGGTGC+AGG | + | chr6.2:2730375-2730394 | MS.gene34188:CDS | 55.0% | |
| CAGGGTGAAACCCTGCGGAA+CGG | + | chr6.2:2729569-2729588 | MS.gene34188:intron | 60.0% | |
| TGTAGGCAGGGGATCAGGCA+GGG | + | chr6.2:2730325-2730344 | MS.gene34188:intron | 60.0% | |
| CATTTAGGGGTGGGGGGGTG+TGG | + | chr6.2:2729539-2729558 | MS.gene34188:intron | 65.0% | |
| GGGTGCAGGGTGAAACCCTG+CGG | + | chr6.2:2729564-2729583 | MS.gene34188:intron | 65.0% | |
| GTAGGCAGGGGATCAGGCAG+GGG | + | chr6.2:2730326-2730345 | MS.gene34188:intron | 65.0% | |
| GTGTAGGCAGGGGATCAGGC+AGG | + | chr6.2:2730324-2730343 | MS.gene34188:intron | 65.0% | |
| ! | TAGGGGTGGGGGGGTGTGGT+GGG | + | chr6.2:2729543-2729562 | MS.gene34188:intron | 70.0% |
| ! | TTAGGGGTGGGGGGGTGTGG+TGG | + | chr6.2:2729542-2729561 | MS.gene34188:intron | 70.0% |
| ! | AGGGGTGGGGGGGTGTGGTG+GGG | + | chr6.2:2729544-2729563 | MS.gene34188:intron | 75.0% |
| ! | GGGGGGTGTGGTGGGGTGCA+GGG | + | chr6.2:2729551-2729570 | MS.gene34188:intron | 75.0% |
| !! | GGGGGGGTGTGGTGGGGTGC+AGG | + | chr6.2:2729550-2729569 | MS.gene34188:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 2728407 | 2730524 | 2728407 | ID=MS.gene34188 |
| chr6.2 | mRNA | 2728407 | 2730524 | 2728407 | ID=MS.gene34188.t1;Parent=MS.gene34188 |
| chr6.2 | exon | 2728407 | 2728578 | 2728407 | ID=MS.gene34188.t1.exon1;Parent=MS.gene34188.t1 |
| chr6.2 | CDS | 2728407 | 2728578 | 2728407 | ID=cds.MS.gene34188.t1;Parent=MS.gene34188.t1 |
| chr6.2 | exon | 2730330 | 2730524 | 2730330 | ID=MS.gene34188.t1.exon2;Parent=MS.gene34188.t1 |
| chr6.2 | CDS | 2730330 | 2730524 | 2730330 | ID=cds.MS.gene34188.t1;Parent=MS.gene34188.t1 |
| Gene Sequence |
| Protein sequence |
