Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64772.t1 | XP_013458449.1 | 93.3 | 165 | 11 | 0 | 1 | 165 | 1 | 165 | 8.00E-76 | 293.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64772.t1 | A0A072V2X5 | 93.3 | 165 | 11 | 0 | 1 | 165 | 1 | 165 | 5.7e-76 | 293.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene64772 | 0.81129 | 7.54E-51 | -1.69E-46 |
MS.gene049159 | MS.gene64772 | 0.832839 | 7.52E-56 | -1.69E-46 |
MS.gene049254 | MS.gene64772 | 0.859065 | 5.35E-63 | -1.69E-46 |
MS.gene049283 | MS.gene64772 | 0.825791 | 3.87E-54 | -1.69E-46 |
MS.gene049404 | MS.gene64772 | 0.837472 | 5.10E-57 | -1.69E-46 |
MS.gene049435 | MS.gene64772 | 0.808577 | 2.89E-50 | -1.69E-46 |
MS.gene049452 | MS.gene64772 | 0.834434 | 3.00E-56 | -1.69E-46 |
MS.gene049499 | MS.gene64772 | 0.830576 | 2.72E-55 | -1.69E-46 |
MS.gene049983 | MS.gene64772 | 0.830237 | 3.29E-55 | -1.69E-46 |
MS.gene050026 | MS.gene64772 | 0.820935 | 5.27E-53 | -1.69E-46 |
MS.gene050073 | MS.gene64772 | 0.805212 | 1.49E-49 | -1.69E-46 |
MS.gene050273 | MS.gene64772 | 0.811526 | 6.70E-51 | -1.69E-46 |
MS.gene050559 | MS.gene64772 | 0.842788 | 2.09E-58 | -1.69E-46 |
MS.gene050561 | MS.gene64772 | 0.84053 | 8.22E-58 | -1.69E-46 |
MS.gene050562 | MS.gene64772 | 0.828689 | 7.82E-55 | -1.69E-46 |
MS.gene051181 | MS.gene64772 | 0.802286 | 6.03E-49 | -1.69E-46 |
MS.gene051198 | MS.gene64772 | 0.834378 | 3.10E-56 | -1.69E-46 |
MS.gene051279 | MS.gene64772 | 0.852989 | 3.21E-61 | -1.69E-46 |
MS.gene051332 | MS.gene64772 | 0.831231 | 1.88E-55 | -1.69E-46 |
MS.gene051363 | MS.gene64772 | 0.808338 | 3.25E-50 | -1.69E-46 |
MS.gene051368 | MS.gene64772 | 0.829434 | 5.16E-55 | -1.69E-46 |
MS.gene051744 | MS.gene64772 | 0.835153 | 1.98E-56 | -1.69E-46 |
MS.gene051800 | MS.gene64772 | 0.814651 | 1.38E-51 | -1.69E-46 |
MS.gene052037 | MS.gene64772 | 0.801925 | 7.15E-49 | -1.69E-46 |
MS.gene052108 | MS.gene64772 | 0.80276 | 4.81E-49 | -1.69E-46 |
MS.gene052208 | MS.gene64772 | 0.810762 | 9.81E-51 | -1.69E-46 |
MS.gene052239 | MS.gene64772 | -0.834857 | 2.35E-56 | -1.69E-46 |
MS.gene052500 | MS.gene64772 | 0.804036 | 2.62E-49 | -1.69E-46 |
MS.gene052502 | MS.gene64772 | 0.800369 | 1.49E-48 | -1.69E-46 |
MS.gene052519 | MS.gene64772 | 0.817866 | 2.64E-52 | -1.69E-46 |
MS.gene052534 | MS.gene64772 | 0.810217 | 1.29E-50 | -1.69E-46 |
MS.gene052582 | MS.gene64772 | 0.842699 | 2.20E-58 | -1.69E-46 |
MS.gene052584 | MS.gene64772 | 0.83457 | 2.78E-56 | -1.69E-46 |
MS.gene052773 | MS.gene64772 | 0.801473 | 8.86E-49 | -1.69E-46 |
MS.gene052826 | MS.gene64772 | 0.804334 | 2.27E-49 | -1.69E-46 |
MS.gene052954 | MS.gene64772 | 0.831492 | 1.62E-55 | -1.69E-46 |
MS.gene053006 | MS.gene64772 | 0.833979 | 3.91E-56 | -1.69E-46 |
MS.gene053079 | MS.gene64772 | 0.822367 | 2.46E-53 | -1.69E-46 |
MS.gene05308 | MS.gene64772 | 0.806151 | 9.45E-50 | -1.69E-46 |
MS.gene053166 | MS.gene64772 | 0.812561 | 3.98E-51 | -1.69E-46 |
MS.gene053226 | MS.gene64772 | 0.834203 | 3.43E-56 | -1.69E-46 |
MS.gene05364 | MS.gene64772 | 0.800464 | 1.42E-48 | -1.69E-46 |
MS.gene053931 | MS.gene64772 | 0.844354 | 7.96E-59 | -1.69E-46 |
MS.gene05415 | MS.gene64772 | 0.835847 | 1.32E-56 | -1.69E-46 |
MS.gene054236 | MS.gene64772 | 0.810248 | 1.27E-50 | -1.69E-46 |
MS.gene054479 | MS.gene64772 | 0.816561 | 5.19E-52 | -1.69E-46 |
MS.gene054576 | MS.gene64772 | 0.804577 | 2.02E-49 | -1.69E-46 |
MS.gene054651 | MS.gene64772 | 0.860576 | 1.88E-63 | -1.69E-46 |
MS.gene054657 | MS.gene64772 | 0.807304 | 5.40E-50 | -1.69E-46 |
MS.gene054893 | MS.gene64772 | 0.803068 | 4.16E-49 | -1.69E-46 |
MS.gene055228 | MS.gene64772 | 0.818515 | 1.88E-52 | -1.69E-46 |
MS.gene055230 | MS.gene64772 | 0.809637 | 1.71E-50 | -1.69E-46 |
MS.gene055464 | MS.gene64772 | 0.820104 | 8.18E-53 | -1.69E-46 |
MS.gene055586 | MS.gene64772 | 0.83626 | 1.04E-56 | -1.69E-46 |
MS.gene055818 | MS.gene64772 | 0.826525 | 2.59E-54 | -1.69E-46 |
MS.gene055841 | MS.gene64772 | 0.849119 | 3.97E-60 | -1.69E-46 |
MS.gene056050 | MS.gene64772 | 0.808447 | 3.08E-50 | -1.69E-46 |
MS.gene056162 | MS.gene64772 | 0.841787 | 3.84E-58 | -1.69E-46 |
MS.gene056174 | MS.gene64772 | 0.824876 | 6.37E-54 | -1.69E-46 |
MS.gene056252 | MS.gene64772 | 0.838742 | 2.40E-57 | -1.69E-46 |
MS.gene056363 | MS.gene64772 | 0.803669 | 3.12E-49 | -1.69E-46 |
MS.gene056366 | MS.gene64772 | 0.814411 | 1.56E-51 | -1.69E-46 |
MS.gene056506 | MS.gene64772 | 0.807706 | 4.43E-50 | -1.69E-46 |
MS.gene056776 | MS.gene64772 | 0.839166 | 1.86E-57 | -1.69E-46 |
MS.gene05686 | MS.gene64772 | 0.860128 | 2.56E-63 | -1.69E-46 |
MS.gene05690 | MS.gene64772 | 0.805762 | 1.14E-49 | -1.69E-46 |
MS.gene056973 | MS.gene64772 | 0.831472 | 1.64E-55 | -1.69E-46 |
MS.gene057060 | MS.gene64772 | 0.812313 | 4.51E-51 | -1.69E-46 |
MS.gene057208 | MS.gene64772 | 0.855148 | 7.66E-62 | -1.69E-46 |
MS.gene057444 | MS.gene64772 | 0.820275 | 7.47E-53 | -1.69E-46 |
MS.gene057598 | MS.gene64772 | 0.84455 | 7.05E-59 | -1.69E-46 |
MS.gene057601 | MS.gene64772 | 0.804823 | 1.80E-49 | -1.69E-46 |
MS.gene057693 | MS.gene64772 | 0.815759 | 7.84E-52 | -1.69E-46 |
MS.gene057855 | MS.gene64772 | 0.827982 | 1.16E-54 | -1.69E-46 |
MS.gene057869 | MS.gene64772 | 0.822157 | 2.75E-53 | -1.69E-46 |
MS.gene058008 | MS.gene64772 | 0.843524 | 1.33E-58 | -1.69E-46 |
MS.gene058009 | MS.gene64772 | 0.84921 | 3.74E-60 | -1.69E-46 |
MS.gene058010 | MS.gene64772 | 0.852983 | 3.23E-61 | -1.69E-46 |
MS.gene058037 | MS.gene64772 | 0.808014 | 3.81E-50 | -1.69E-46 |
MS.gene058427 | MS.gene64772 | 0.809121 | 2.21E-50 | -1.69E-46 |
MS.gene058548 | MS.gene64772 | 0.818895 | 1.54E-52 | -1.69E-46 |
MS.gene058625 | MS.gene64772 | 0.804403 | 2.20E-49 | -1.69E-46 |
MS.gene058781 | MS.gene64772 | 0.843748 | 1.16E-58 | -1.69E-46 |
MS.gene058783 | MS.gene64772 | 0.845555 | 3.78E-59 | -1.69E-46 |
MS.gene058979 | MS.gene64772 | 0.869587 | 2.77E-66 | -1.69E-46 |
MS.gene059317 | MS.gene64772 | 0.802423 | 5.65E-49 | -1.69E-46 |
MS.gene059584 | MS.gene64772 | 0.803212 | 3.88E-49 | -1.69E-46 |
MS.gene059842 | MS.gene64772 | 0.80204 | 6.77E-49 | -1.69E-46 |
MS.gene060011 | MS.gene64772 | 0.830117 | 3.52E-55 | -1.69E-46 |
MS.gene060167 | MS.gene64772 | 0.823351 | 1.45E-53 | -1.69E-46 |
MS.gene060244 | MS.gene64772 | 0.80906 | 2.28E-50 | -1.69E-46 |
MS.gene060310 | MS.gene64772 | 0.815295 | 9.95E-52 | -1.69E-46 |
MS.gene060365 | MS.gene64772 | 0.811622 | 6.39E-51 | -1.69E-46 |
MS.gene060521 | MS.gene64772 | 0.809707 | 1.66E-50 | -1.69E-46 |
MS.gene060918 | MS.gene64772 | 0.817442 | 3.29E-52 | -1.69E-46 |
MS.gene060933 | MS.gene64772 | 0.82694 | 2.06E-54 | -1.69E-46 |
MS.gene060935 | MS.gene64772 | 0.863656 | 2.13E-64 | -1.69E-46 |
MS.gene060937 | MS.gene64772 | 0.849735 | 2.67E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64772.t1 | MTR_4g125810 | 93.333 | 165 | 11 | 0 | 1 | 165 | 1 | 165 | 2.15e-103 | 306 |
MS.gene64772.t1 | MTR_2g040500 | 52.344 | 128 | 40 | 4 | 1 | 116 | 1 | 119 | 3.07e-29 | 112 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 42 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAAATTTCCAAGTGTAAA+TGG | 0.209870 | 5.2:+13265731 | None:intergenic |
TGATTGAATGTGGGAGTAAT+TGG | 0.283028 | 5.2:-13265514 | MS.gene64772:CDS |
TTTCAGTGCCTGCATAATTC+AGG | 0.301475 | 5.2:-13265431 | MS.gene64772:CDS |
CGTCCTTTATAGCCTGGTTA+TGG | 0.318628 | 5.2:+13265477 | None:intergenic |
TAGCATAAACGAGGTACTTC+TGG | 0.349729 | 5.2:-13265345 | MS.gene64772:CDS |
GAGACAACGGCCGCACCAAC+TGG | 0.363393 | 5.2:+13265545 | None:intergenic |
CACGGTATCCGCGGAGGTAA+AGG | 0.384992 | 5.2:-13265573 | MS.gene64772:CDS |
GATAACCGTGTTGAAGCTTA+TGG | 0.387775 | 5.2:-13265675 | MS.gene64772:CDS |
ACTTGGAAATTTGATTCAAA+AGG | 0.416275 | 5.2:-13265723 | MS.gene64772:CDS |
AAGCCATAACCAGGCTATAA+AGG | 0.423467 | 5.2:-13265480 | MS.gene64772:CDS |
TTGATATTAAATCCTGCAGT+TGG | 0.427928 | 5.2:-13265635 | MS.gene64772:CDS |
CTTGAAGATATTTCTTCCAT+TGG | 0.442941 | 5.2:+13265764 | None:intergenic |
AGATTCACCAATCATCGTTA+AGG | 0.450055 | 5.2:-13265393 | MS.gene64772:CDS |
TGCTGCTGTTACAACTCATA+TGG | 0.453647 | 5.2:-13265699 | MS.gene64772:CDS |
TCACCAACCTTAACGATGAT+TGG | 0.459136 | 5.2:+13265386 | None:intergenic |
AGTTGGTGCGGCCGTTGTCT+CGG | 0.466997 | 5.2:-13265543 | MS.gene64772:CDS |
AAGGTTGGTGATGAGATTCA+TGG | 0.470185 | 5.2:-13265374 | MS.gene64772:CDS |
TCTCATCGTCCTTTATAGCC+TGG | 0.499525 | 5.2:+13265471 | None:intergenic |
CGAGGTACTTCTGGTACTAA+AGG | 0.500088 | 5.2:-13265336 | MS.gene64772:CDS |
ACTAAAGGCCGAGCAGAATA+CGG | 0.501113 | 5.2:-13265321 | MS.gene64772:CDS |
ATTGAGAGCCTGAATTATGC+AGG | 0.559602 | 5.2:+13265423 | None:intergenic |
AACAGAATCCGTATTCTGCT+CGG | 0.560508 | 5.2:+13265313 | None:intergenic |
TCACCAATCATCGTTAAGGT+TGG | 0.561708 | 5.2:-13265389 | MS.gene64772:CDS |
GTTGCAGTGCCATTTACACT+TGG | 0.572388 | 5.2:-13265740 | MS.gene64772:CDS |
GAGGTAAAGGAGAATCCAGT+TGG | 0.575816 | 5.2:-13265560 | MS.gene64772:CDS |
CTGTTGCAATGGATATTGAG+AGG | 0.582351 | 5.2:-13265295 | MS.gene64772:CDS |
CTTGAGTGAAAGCCATAACC+AGG | 0.583606 | 5.2:-13265489 | MS.gene64772:CDS |
GAATACGGATTCTGTTGCAA+TGG | 0.586777 | 5.2:-13265306 | MS.gene64772:CDS |
TGTTGCAATGGATATTGAGA+GGG | 0.588381 | 5.2:-13265294 | MS.gene64772:CDS |
TCGGAAATGTTGATTGAATG+TGG | 0.599725 | 5.2:-13265524 | MS.gene64772:CDS |
CGATGAGATCATGTTAGCTG+TGG | 0.601298 | 5.2:-13265456 | MS.gene64772:CDS |
TAATTCAGGCTCTCAATCTG+TGG | 0.624297 | 5.2:-13265417 | MS.gene64772:CDS |
AATCAACATTTCCGAGACAA+CGG | 0.634725 | 5.2:+13265532 | None:intergenic |
CGGAAATGTTGATTGAATGT+GGG | 0.636981 | 5.2:-13265523 | MS.gene64772:CDS |
GTTGAAGACTAACATCAGCA+TGG | 0.646810 | 5.2:+13265603 | None:intergenic |
AAAGGAGAATCCAGTTGGTG+CGG | 0.646998 | 5.2:-13265555 | MS.gene64772:CDS |
TCAGATCACGGTATCCGCGG+AGG | 0.649352 | 5.2:-13265579 | MS.gene64772:CDS |
ACATCAGATCACGGTATCCG+CGG | 0.656186 | 5.2:-13265582 | MS.gene64772:CDS |
TGGATTCTCCTTTACCTCCG+CGG | 0.668967 | 5.2:+13265565 | None:intergenic |
TAGTCTTCAACATCAGATCA+CGG | 0.669945 | 5.2:-13265591 | MS.gene64772:CDS |
ATTTGCCATAAGCTTCAACA+CGG | 0.678796 | 5.2:+13265670 | None:intergenic |
TGGTAAGTTTAGCATAAACG+AGG | 0.709809 | 5.2:-13265354 | MS.gene64772:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ACTTGGAAATTTGATTCAAA+AGG | - | chr5.2:13265324-13265343 | MS.gene64772:CDS | 25.0% |
! | ATCAAATTTCCAAGTGTAAA+TGG | + | chr5.2:13265319-13265338 | None:intergenic | 25.0% |
TTGATATTAAATCCTGCAGT+TGG | - | chr5.2:13265412-13265431 | MS.gene64772:CDS | 30.0% | |
AATCAACATTTCCGAGACAA+CGG | + | chr5.2:13265518-13265537 | None:intergenic | 35.0% | |
AGATTCACCAATCATCGTTA+AGG | - | chr5.2:13265654-13265673 | MS.gene64772:CDS | 35.0% | |
ATTTGCCATAAGCTTCAACA+CGG | + | chr5.2:13265380-13265399 | None:intergenic | 35.0% | |
TAGTCTTCAACATCAGATCA+CGG | - | chr5.2:13265456-13265475 | MS.gene64772:CDS | 35.0% | |
TGATTGAATGTGGGAGTAAT+TGG | - | chr5.2:13265533-13265552 | MS.gene64772:CDS | 35.0% | |
TGGTAAGTTTAGCATAAACG+AGG | - | chr5.2:13265693-13265712 | MS.gene64772:CDS | 35.0% | |
TGTTGCAATGGATATTGAGA+GGG | - | chr5.2:13265753-13265772 | MS.gene64772:CDS | 35.0% | |
! | CGGAAATGTTGATTGAATGT+GGG | - | chr5.2:13265524-13265543 | MS.gene64772:CDS | 35.0% |
! | TCGGAAATGTTGATTGAATG+TGG | - | chr5.2:13265523-13265542 | MS.gene64772:CDS | 35.0% |
AACAGAATCCGTATTCTGCT+CGG | + | chr5.2:13265737-13265756 | None:intergenic | 40.0% | |
AAGCCATAACCAGGCTATAA+AGG | - | chr5.2:13265567-13265586 | MS.gene64772:CDS | 40.0% | |
ATTGAGAGCCTGAATTATGC+AGG | + | chr5.2:13265627-13265646 | None:intergenic | 40.0% | |
CTGTTGCAATGGATATTGAG+AGG | - | chr5.2:13265752-13265771 | MS.gene64772:CDS | 40.0% | |
GAATACGGATTCTGTTGCAA+TGG | - | chr5.2:13265741-13265760 | MS.gene64772:CDS | 40.0% | |
GATAACCGTGTTGAAGCTTA+TGG | - | chr5.2:13265372-13265391 | MS.gene64772:CDS | 40.0% | |
GTTGAAGACTAACATCAGCA+TGG | + | chr5.2:13265447-13265466 | None:intergenic | 40.0% | |
TAATTCAGGCTCTCAATCTG+TGG | - | chr5.2:13265630-13265649 | MS.gene64772:CDS | 40.0% | |
TCACCAACCTTAACGATGAT+TGG | + | chr5.2:13265664-13265683 | None:intergenic | 40.0% | |
TCACCAATCATCGTTAAGGT+TGG | - | chr5.2:13265658-13265677 | MS.gene64772:CDS | 40.0% | |
TGCTGCTGTTACAACTCATA+TGG | - | chr5.2:13265348-13265367 | MS.gene64772:CDS | 40.0% | |
TTTCAGTGCCTGCATAATTC+AGG | - | chr5.2:13265616-13265635 | MS.gene64772:CDS | 40.0% | |
! | TAGCATAAACGAGGTACTTC+TGG | - | chr5.2:13265702-13265721 | MS.gene64772:CDS | 40.0% |
! | TGGTTTTCATTTCCAACTGC+AGG | + | chr5.2:13265427-13265446 | None:intergenic | 40.0% |
!! | AAGGTTGGTGATGAGATTCA+TGG | - | chr5.2:13265673-13265692 | MS.gene64772:CDS | 40.0% |
ACTAAAGGCCGAGCAGAATA+CGG | - | chr5.2:13265726-13265745 | MS.gene64772:CDS | 45.0% | |
CGATGAGATCATGTTAGCTG+TGG | - | chr5.2:13265591-13265610 | MS.gene64772:CDS | 45.0% | |
CGTCCTTTATAGCCTGGTTA+TGG | + | chr5.2:13265573-13265592 | None:intergenic | 45.0% | |
CTTGAGTGAAAGCCATAACC+AGG | - | chr5.2:13265558-13265577 | MS.gene64772:CDS | 45.0% | |
GAGGTAAAGGAGAATCCAGT+TGG | - | chr5.2:13265487-13265506 | MS.gene64772:CDS | 45.0% | |
TCTCATCGTCCTTTATAGCC+TGG | + | chr5.2:13265579-13265598 | None:intergenic | 45.0% | |
! | AAAGGAGAATCCAGTTGGTG+CGG | - | chr5.2:13265492-13265511 | MS.gene64772:CDS | 45.0% |
! | CGAGGTACTTCTGGTACTAA+AGG | - | chr5.2:13265711-13265730 | MS.gene64772:CDS | 45.0% |
!! | GTTGCAGTGCCATTTACACT+TGG | - | chr5.2:13265307-13265326 | MS.gene64772:CDS | 45.0% |
ACATCAGATCACGGTATCCG+CGG | - | chr5.2:13265465-13265484 | MS.gene64772:CDS | 50.0% | |
TGGATTCTCCTTTACCTCCG+CGG | + | chr5.2:13265485-13265504 | None:intergenic | 50.0% | |
CACGGTATCCGCGGAGGTAA+AGG | - | chr5.2:13265474-13265493 | MS.gene64772:CDS | 60.0% | |
TCAGATCACGGTATCCGCGG+AGG | - | chr5.2:13265468-13265487 | MS.gene64772:CDS | 60.0% | |
! | AGTTGGTGCGGCCGTTGTCT+CGG | - | chr5.2:13265504-13265523 | MS.gene64772:CDS | 60.0% |
GAGACAACGGCCGCACCAAC+TGG | + | chr5.2:13265505-13265524 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 13265286 | 13265783 | 13265286 | ID=MS.gene64772 |
chr5.2 | mRNA | 13265286 | 13265783 | 13265286 | ID=MS.gene64772.t1;Parent=MS.gene64772 |
chr5.2 | exon | 13265286 | 13265783 | 13265286 | ID=MS.gene64772.t1.exon1;Parent=MS.gene64772.t1 |
chr5.2 | CDS | 13265286 | 13265783 | 13265286 | ID=cds.MS.gene64772.t1;Parent=MS.gene64772.t1 |
Gene Sequence |
Protein sequence |