Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92390.t1 | RHN40224.1 | 96.8 | 339 | 11 | 0 | 1 | 339 | 67 | 405 | 1.10E-175 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92390.t1 | Q8GYX8 | 57.5 | 320 | 131 | 4 | 1 | 318 | 1 | 317 | 1.6e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92390.t1 | G7LEJ1 | 96.8 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 7.7e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene92390 | 0.855238 | 7.21E-62 | -1.69E-46 |
| MS.gene049159 | MS.gene92390 | 0.808791 | 2.60E-50 | -1.69E-46 |
| MS.gene049166 | MS.gene92390 | 0.835905 | 1.28E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene92390 | 0.820342 | 7.21E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene92390 | 0.835977 | 1.23E-56 | -1.69E-46 |
| MS.gene049786 | MS.gene92390 | 0.819516 | 1.11E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene92390 | 0.852485 | 4.47E-61 | -1.69E-46 |
| MS.gene050084 | MS.gene92390 | 0.832549 | 8.87E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene92390 | 0.852072 | 5.87E-61 | -1.69E-46 |
| MS.gene050114 | MS.gene92390 | 0.810586 | 1.07E-50 | -1.69E-46 |
| MS.gene050213 | MS.gene92390 | 0.820129 | 8.07E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene92390 | 0.818089 | 2.35E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene92390 | 0.819334 | 1.23E-52 | -1.69E-46 |
| MS.gene050384 | MS.gene92390 | 0.845651 | 3.56E-59 | -1.69E-46 |
| MS.gene050386 | MS.gene92390 | 0.852142 | 5.60E-61 | -1.69E-46 |
| MS.gene050551 | MS.gene92390 | 0.841132 | 5.72E-58 | -1.69E-46 |
| MS.gene050646 | MS.gene92390 | 0.823582 | 1.28E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene92390 | 0.872315 | 3.50E-67 | -1.69E-46 |
| MS.gene050689 | MS.gene92390 | 0.860087 | 2.64E-63 | -1.69E-46 |
| MS.gene050838 | MS.gene92390 | 0.839578 | 1.46E-57 | -1.69E-46 |
| MS.gene050941 | MS.gene92390 | 0.826226 | 3.05E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene92390 | 0.876245 | 1.63E-68 | -1.69E-46 |
| MS.gene051102 | MS.gene92390 | 0.827944 | 1.18E-54 | -1.69E-46 |
| MS.gene051233 | MS.gene92390 | 0.810699 | 1.01E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene92390 | 0.823056 | 1.70E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene92390 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene92390 | 0.841607 | 4.29E-58 | -1.69E-46 |
| MS.gene051381 | MS.gene92390 | 0.832708 | 8.10E-56 | -1.69E-46 |
| MS.gene051676 | MS.gene92390 | 0.811146 | 8.10E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene92390 | 0.801837 | 7.46E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene92390 | 0.833541 | 5.03E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene92390 | 0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene92390 | 0.803955 | 2.72E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene92390 | 0.845378 | 4.22E-59 | -1.69E-46 |
| MS.gene052072 | MS.gene92390 | 0.836909 | 7.10E-57 | -1.69E-46 |
| MS.gene052307 | MS.gene92390 | 0.842458 | 2.55E-58 | -1.69E-46 |
| MS.gene052342 | MS.gene92390 | 0.84285 | 2.01E-58 | -1.69E-46 |
| MS.gene052434 | MS.gene92390 | 0.853758 | 1.93E-61 | -1.69E-46 |
| MS.gene052463 | MS.gene92390 | 0.819598 | 1.07E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene92390 | 0.812657 | 3.80E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene92390 | 0.834567 | 2.78E-56 | -1.69E-46 |
| MS.gene052775 | MS.gene92390 | 0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene052776 | MS.gene92390 | 0.835759 | 1.39E-56 | -1.69E-46 |
| MS.gene052994 | MS.gene92390 | 0.810127 | 1.35E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene92390 | 0.805117 | 1.56E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene92390 | 0.861782 | 8.05E-64 | -1.69E-46 |
| MS.gene053079 | MS.gene92390 | 0.848534 | 5.77E-60 | -1.69E-46 |
| MS.gene053143 | MS.gene92390 | 0.814253 | 1.69E-51 | -1.69E-46 |
| MS.gene053167 | MS.gene92390 | 0.827237 | 1.75E-54 | -1.69E-46 |
| MS.gene053456 | MS.gene92390 | 0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene053564 | MS.gene92390 | 0.819116 | 1.38E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene92390 | 0.823399 | 1.41E-53 | -1.69E-46 |
| MS.gene053786 | MS.gene92390 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene92390 | 0.809308 | 2.02E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene92390 | 0.810166 | 1.32E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene92390 | 0.822947 | 1.80E-53 | -1.69E-46 |
| MS.gene054823 | MS.gene92390 | 0.83356 | 4.97E-56 | -1.69E-46 |
| MS.gene05517 | MS.gene92390 | 0.839053 | 1.99E-57 | -1.69E-46 |
| MS.gene055310 | MS.gene92390 | 0.803005 | 4.28E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene92390 | 0.865344 | 6.32E-65 | -1.69E-46 |
| MS.gene055313 | MS.gene92390 | 0.841535 | 4.48E-58 | -1.69E-46 |
| MS.gene055314 | MS.gene92390 | 0.846088 | 2.71E-59 | -1.69E-46 |
| MS.gene055469 | MS.gene92390 | 0.811616 | 6.41E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene92390 | 0.872733 | 2.53E-67 | -1.69E-46 |
| MS.gene055864 | MS.gene92390 | 0.816821 | 4.54E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene92390 | 0.855569 | 5.78E-62 | -1.69E-46 |
| MS.gene056097 | MS.gene92390 | 0.842742 | 2.15E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene92390 | 0.982634 | 1.34E-155 | -1.69E-46 |
| MS.gene056308 | MS.gene92390 | 0.814579 | 1.43E-51 | -1.69E-46 |
| MS.gene056390 | MS.gene92390 | 0.818856 | 1.58E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene92390 | 0.801365 | 9.32E-49 | -1.69E-46 |
| MS.gene056509 | MS.gene92390 | 0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene92390 | 0.821467 | 3.98E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene92390 | 0.846543 | 2.03E-59 | -1.69E-46 |
| MS.gene056831 | MS.gene92390 | 0.831293 | 1.81E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene92390 | 0.817228 | 3.68E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene92390 | 0.823944 | 1.05E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene92390 | 0.830797 | 2.40E-55 | -1.69E-46 |
| MS.gene057890 | MS.gene92390 | -0.809798 | 1.58E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene92390 | 0.818511 | 1.89E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene92390 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene92390 | 0.845626 | 3.61E-59 | -1.69E-46 |
| MS.gene058638 | MS.gene92390 | 0.827195 | 1.79E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene92390 | 0.83746 | 5.13E-57 | -1.69E-46 |
| MS.gene058646 | MS.gene92390 | 0.828869 | 7.07E-55 | -1.69E-46 |
| MS.gene058758 | MS.gene92390 | 0.813942 | 1.98E-51 | -1.69E-46 |
| MS.gene058976 | MS.gene92390 | 0.814328 | 1.63E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene92390 | 0.820547 | 6.47E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene92390 | 0.858553 | 7.61E-63 | -1.69E-46 |
| MS.gene059170 | MS.gene92390 | 0.807028 | 6.17E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene92390 | 0.82026 | 7.53E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene92390 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene92390 | 0.8121 | 5.02E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene92390 | 0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene92390 | 0.839698 | 1.36E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene92390 | 0.812191 | 4.80E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene92390 | 0.868721 | 5.29E-66 | -1.69E-46 |
| MS.gene060563 | MS.gene92390 | 0.817097 | 3.94E-52 | -1.69E-46 |
| MS.gene060637 | MS.gene92390 | 0.827136 | 1.85E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene92390 | 0.815996 | 6.94E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene92390 | 0.820829 | 5.58E-53 | -1.69E-46 |
| MS.gene060870 | MS.gene92390 | 0.84572 | 3.41E-59 | -1.69E-46 |
| MS.gene060932 | MS.gene92390 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene92390 | 0.832097 | 1.15E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene92390 | 0.827796 | 1.28E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene92390 | 0.832968 | 6.98E-56 | -1.69E-46 |
| MS.gene061006 | MS.gene92390 | 0.83009 | 3.57E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene92390 | 0.841671 | 4.12E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92390.t1 | MTR_8g037810 | 96.755 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 0.0 | 670 |
| MS.gene92390.t1 | MTR_1g029470 | 57.006 | 314 | 127 | 2 | 1 | 313 | 1 | 307 | 1.30e-119 | 350 |
| MS.gene92390.t1 | MTR_1g029460 | 53.333 | 315 | 138 | 3 | 1 | 313 | 1 | 308 | 2.65e-106 | 317 |
| MS.gene92390.t1 | MTR_5g004570 | 61.304 | 230 | 87 | 1 | 1 | 230 | 1 | 228 | 1.94e-100 | 296 |
| MS.gene92390.t1 | MTR_5g004600 | 52.174 | 92 | 42 | 1 | 229 | 318 | 4 | 95 | 3.23e-22 | 92.4 |
| MS.gene92390.t1 | MTR_4g023470 | 55.072 | 69 | 31 | 0 | 6 | 74 | 86 | 154 | 2.17e-15 | 77.0 |
| MS.gene92390.t1 | MTR_8g006430 | 56.164 | 73 | 28 | 2 | 5 | 77 | 13 | 81 | 1.59e-14 | 74.3 |
| MS.gene92390.t1 | MTR_3g027580 | 52.308 | 65 | 31 | 0 | 7 | 71 | 90 | 154 | 1.80e-14 | 74.3 |
| MS.gene92390.t1 | MTR_7g109340 | 43.158 | 95 | 47 | 1 | 6 | 93 | 26 | 120 | 1.09e-13 | 71.6 |
| MS.gene92390.t1 | MTR_4g080350 | 36.283 | 113 | 67 | 3 | 7 | 116 | 73 | 183 | 6.65e-13 | 68.9 |
| MS.gene92390.t1 | MTR_1g110310 | 46.575 | 73 | 39 | 0 | 8 | 80 | 18 | 90 | 1.60e-12 | 68.2 |
| MS.gene92390.t1 | MTR_5g035770 | 43.011 | 93 | 44 | 2 | 8 | 91 | 27 | 119 | 2.62e-12 | 67.8 |
| MS.gene92390.t1 | MTR_7g092380 | 51.562 | 64 | 31 | 0 | 8 | 71 | 24 | 87 | 3.46e-12 | 66.2 |
| MS.gene92390.t1 | MTR_3g087030 | 50.725 | 69 | 33 | 1 | 7 | 75 | 83 | 150 | 4.81e-12 | 67.0 |
| MS.gene92390.t1 | MTR_4g023490 | 52.941 | 68 | 31 | 1 | 7 | 74 | 17 | 83 | 1.13e-11 | 65.5 |
| MS.gene92390.t1 | MTR_2g087660 | 54.795 | 73 | 29 | 2 | 5 | 77 | 12 | 80 | 1.99e-11 | 64.7 |
| MS.gene92390.t1 | MTR_2g087660 | 54.795 | 73 | 29 | 2 | 5 | 77 | 12 | 80 | 2.31e-11 | 64.7 |
| MS.gene92390.t1 | MTR_1g052110 | 40.000 | 90 | 51 | 1 | 5 | 91 | 37 | 126 | 3.14e-11 | 63.5 |
| MS.gene92390.t1 | MTR_3g108020 | 38.776 | 98 | 57 | 2 | 7 | 101 | 5 | 102 | 4.61e-11 | 63.5 |
| MS.gene92390.t1 | MTR_2g104030 | 40.860 | 93 | 47 | 2 | 7 | 92 | 71 | 162 | 8.14e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92390.t1 | AT4G39150 | 69.795 | 341 | 101 | 1 | 1 | 339 | 1 | 341 | 1.36e-179 | 501 |
| MS.gene92390.t1 | AT4G39150 | 69.795 | 341 | 101 | 1 | 1 | 339 | 1 | 341 | 1.36e-179 | 501 |
| MS.gene92390.t1 | AT4G39150 | 69.795 | 341 | 101 | 1 | 1 | 339 | 1 | 341 | 1.36e-179 | 501 |
| MS.gene92390.t1 | AT2G21510 | 68.713 | 342 | 104 | 2 | 1 | 339 | 1 | 342 | 6.38e-173 | 484 |
| MS.gene92390.t1 | AT2G21510 | 68.713 | 342 | 104 | 2 | 1 | 339 | 1 | 342 | 6.38e-173 | 484 |
| MS.gene92390.t1 | AT2G21510 | 67.335 | 349 | 104 | 3 | 1 | 339 | 1 | 349 | 2.96e-170 | 478 |
| MS.gene92390.t1 | AT2G21510 | 67.335 | 349 | 104 | 3 | 1 | 339 | 1 | 349 | 2.96e-170 | 478 |
| MS.gene92390.t1 | AT2G21510 | 70.440 | 318 | 92 | 1 | 1 | 316 | 1 | 318 | 4.67e-166 | 466 |
| MS.gene92390.t1 | AT1G21080 | 55.255 | 333 | 143 | 4 | 1 | 331 | 1 | 329 | 5.18e-123 | 359 |
| MS.gene92390.t1 | AT1G21080 | 55.255 | 333 | 143 | 4 | 1 | 331 | 1 | 329 | 7.74e-123 | 358 |
| MS.gene92390.t1 | AT1G76700 | 57.500 | 320 | 131 | 4 | 1 | 318 | 1 | 317 | 8.93e-123 | 358 |
| MS.gene92390.t1 | AT1G77020 | 54.658 | 322 | 136 | 3 | 1 | 318 | 1 | 316 | 2.59e-117 | 344 |
| MS.gene92390.t1 | AT1G21080 | 51.837 | 245 | 113 | 3 | 89 | 331 | 1 | 242 | 8.62e-76 | 235 |
| MS.gene92390.t1 | AT5G48030 | 49.315 | 73 | 37 | 0 | 7 | 79 | 95 | 167 | 2.66e-14 | 73.9 |
| MS.gene92390.t1 | AT1G59980 | 43.011 | 93 | 44 | 2 | 8 | 91 | 25 | 117 | 8.61e-14 | 72.0 |
| MS.gene92390.t1 | AT1G59980 | 43.011 | 93 | 44 | 2 | 8 | 91 | 25 | 117 | 8.86e-14 | 72.4 |
| MS.gene92390.t1 | AT1G71000 | 49.254 | 67 | 30 | 1 | 6 | 68 | 8 | 74 | 1.44e-13 | 68.2 |
| MS.gene92390.t1 | AT1G71000 | 49.254 | 67 | 30 | 1 | 6 | 68 | 8 | 74 | 7.87e-13 | 66.2 |
| MS.gene92390.t1 | AT2G22360 | 43.956 | 91 | 44 | 2 | 7 | 91 | 87 | 176 | 4.60e-12 | 67.0 |
| MS.gene92390.t1 | AT1G68370 | 46.575 | 73 | 39 | 0 | 8 | 80 | 19 | 91 | 1.05e-11 | 65.9 |
| MS.gene92390.t1 | AT2G42750 | 33.628 | 113 | 70 | 3 | 7 | 116 | 77 | 187 | 1.24e-11 | 65.5 |
| MS.gene92390.t1 | AT3G62600 | 38.835 | 103 | 53 | 1 | 6 | 98 | 26 | 128 | 1.67e-11 | 65.1 |
| MS.gene92390.t1 | AT5G22060 | 45.745 | 94 | 42 | 3 | 5 | 93 | 13 | 102 | 1.67e-11 | 65.5 |
| MS.gene92390.t1 | AT4G39960 | 41.489 | 94 | 48 | 2 | 4 | 91 | 83 | 175 | 1.72e-11 | 65.5 |
| MS.gene92390.t1 | AT4G39960 | 41.489 | 94 | 48 | 2 | 4 | 91 | 83 | 175 | 1.72e-11 | 65.5 |
| MS.gene92390.t1 | AT1G28210 | 47.619 | 63 | 33 | 0 | 7 | 69 | 49 | 111 | 2.37e-11 | 64.7 |
| MS.gene92390.t1 | AT1G28210 | 47.619 | 63 | 33 | 0 | 7 | 69 | 49 | 111 | 2.43e-11 | 64.7 |
| MS.gene92390.t1 | AT1G28210 | 47.619 | 63 | 33 | 0 | 7 | 69 | 49 | 111 | 2.66e-11 | 64.7 |
| MS.gene92390.t1 | AT1G80030 | 42.553 | 94 | 46 | 2 | 7 | 93 | 76 | 168 | 4.28e-11 | 64.3 |
| MS.gene92390.t1 | AT1G80030 | 42.553 | 94 | 46 | 2 | 7 | 93 | 76 | 168 | 4.28e-11 | 64.3 |
| MS.gene92390.t1 | AT1G80030 | 42.553 | 94 | 46 | 2 | 7 | 93 | 76 | 168 | 4.28e-11 | 64.3 |
| MS.gene92390.t1 | AT1G80030 | 42.553 | 94 | 46 | 2 | 7 | 93 | 76 | 168 | 4.98e-11 | 63.9 |
| MS.gene92390.t1 | AT5G25530 | 47.887 | 71 | 36 | 1 | 7 | 76 | 5 | 75 | 6.47e-11 | 63.2 |
| MS.gene92390.t1 | AT1G24120 | 34.058 | 138 | 71 | 4 | 8 | 131 | 22 | 153 | 6.84e-11 | 63.5 |
| MS.gene92390.t1 | AT3G17830 | 45.000 | 80 | 39 | 2 | 1 | 78 | 58 | 134 | 7.19e-11 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTACTTGTGACTTTATA+CGG | 0.195517 | 8.4:-60400428 | None:intergenic |
| GTTTATGAACGTCCCCTTCT+TGG | 0.203191 | 8.4:+60400380 | MS.gene92390:CDS |
| ATGGACCCTACAACTGTATT+TGG | 0.220684 | 8.4:+60398209 | MS.gene92390:CDS |
| TCCTAACTGTTTCAATGCTT+TGG | 0.291098 | 8.4:-60401097 | None:intergenic |
| ATGCCATGATTAATTCCTTA+TGG | 0.294708 | 8.4:+60400649 | MS.gene92390:CDS |
| GAGAAGAAGAATTTACAAAA+TGG | 0.335589 | 8.4:+60398539 | MS.gene92390:CDS |
| CGTTTGCAACCATTTGTTGA+TGG | 0.347187 | 8.4:+60398514 | MS.gene92390:CDS |
| AAGAGCTTGGAAAGGATATT+CGG | 0.361247 | 8.4:+60400358 | MS.gene92390:CDS |
| CCGAGACACCAGAACGTCTT+TGG | 0.391989 | 8.4:-60401073 | None:intergenic |
| TTCTGCTGCAGATATCAAAA+AGG | 0.400557 | 8.4:+60393112 | MS.gene92390:CDS |
| CCAAAGACGTTCTGGTGTCT+CGG | 0.400902 | 8.4:+60401073 | MS.gene92390:CDS |
| TCACAAGTAACGGCAGCTTC+TGG | 0.406335 | 8.4:+60400438 | MS.gene92390:CDS |
| TCATATGCTTCACGCTTCTC+AGG | 0.426988 | 8.4:-60395227 | None:intergenic |
| AGCATTCCAAATACAGTTGT+AGG | 0.431003 | 8.4:-60398215 | None:intergenic |
| ACTGCTTACTATGATACATT+AGG | 0.437505 | 8.4:+60393074 | MS.gene92390:CDS |
| TCTTCTCGGCCATCAACAAA+TGG | 0.447880 | 8.4:-60398523 | None:intergenic |
| GCTGCTTGGTGAGGCCTACC+AGG | 0.462884 | 8.4:+60395193 | MS.gene92390:intron |
| TGCATACGAACTTGAGGCTC+CGG | 0.463592 | 8.4:-60398320 | None:intergenic |
| AGAAGAAGAATTTACAAAAT+GGG | 0.464479 | 8.4:+60398540 | MS.gene92390:CDS |
| CGCACCCACTCGGCCAAGAA+GGG | 0.465556 | 8.4:-60400393 | None:intergenic |
| CAAAGACGTTCTGGTGTCTC+GGG | 0.475363 | 8.4:+60401074 | MS.gene92390:CDS |
| TCTGCAGCCTTGGGATCCCC+AGG | 0.481072 | 8.4:-60394954 | None:intergenic |
| AAGTGTGTCCAAAGACGTTC+TGG | 0.485022 | 8.4:+60401065 | MS.gene92390:CDS |
| GCTCGTAATCTTTCAAAAGC+TGG | 0.485258 | 8.4:+60398574 | MS.gene92390:CDS |
| TCGCACCCACTCGGCCAAGA+AGG | 0.488488 | 8.4:-60400394 | None:intergenic |
| AATGACATTAATCTTCCATA+AGG | 0.489818 | 8.4:-60400664 | None:intergenic |
| AATGACAAGCAGGTGGAAGC+TGG | 0.494158 | 8.4:+60401318 | MS.gene92390:CDS |
| AAGAGAACAGAAGCTGATAT+CGG | 0.494342 | 8.4:+60398480 | MS.gene92390:CDS |
| CGTCCCCTTCTTGGCCGAGT+GGG | 0.499746 | 8.4:+60400389 | MS.gene92390:CDS |
| GAAAGCTCTTGAAGATAAGA+AGG | 0.500121 | 8.4:+60400626 | MS.gene92390:CDS |
| TCCTTTGTCTCGCACCCACT+CGG | 0.508453 | 8.4:-60400403 | None:intergenic |
| CGAAAAGCAGCAAAAGAGCT+TGG | 0.510724 | 8.4:+60400345 | MS.gene92390:CDS |
| CTTCCATAAGGAATTAATCA+TGG | 0.512807 | 8.4:-60400652 | None:intergenic |
| TTTAGCATCTATAGAAGTTG+AGG | 0.524735 | 8.4:+60398289 | MS.gene92390:CDS |
| AGAACGTCTTTGGACACACT+TGG | 0.530750 | 8.4:-60401063 | None:intergenic |
| GCCGAGTGGGTGCGAGACAA+AGG | 0.536984 | 8.4:+60400402 | MS.gene92390:CDS |
| GCCAAAGCATTGAAACAGTT+AGG | 0.547571 | 8.4:+60401096 | MS.gene92390:CDS |
| CATCAACAAATGGTTGCAAA+CGG | 0.554325 | 8.4:-60398513 | None:intergenic |
| TACAGTTGTAGGGTCCATCA+TGG | 0.554550 | 8.4:-60398204 | None:intergenic |
| GAGCTCAAGAAGCTAAATCA+AGG | 0.558223 | 8.4:+60400579 | MS.gene92390:CDS |
| TTGTATCTATACCAGCTGCT+TGG | 0.561249 | 8.4:+60395179 | MS.gene92390:intron |
| TCTCAGGATCGCTTAAAACC+TGG | 0.564099 | 8.4:-60395211 | None:intergenic |
| AGAAGTTGAGGAAGATTCAC+CGG | 0.567208 | 8.4:+60398301 | MS.gene92390:CDS |
| GCATTCCAAATACAGTTGTA+GGG | 0.573160 | 8.4:-60398214 | None:intergenic |
| GCACCCACTCGGCCAAGAAG+GGG | 0.573409 | 8.4:-60400392 | None:intergenic |
| GAGGCCATGCTACATACAAT+CGG | 0.573820 | 8.4:+60400309 | MS.gene92390:CDS |
| ACGCCGAGAAAATGACAAGC+AGG | 0.587293 | 8.4:+60401308 | MS.gene92390:CDS |
| TCTATACCAGCTGCTTGGTG+AGG | 0.596878 | 8.4:+60395184 | MS.gene92390:intron |
| CCGTATAAAGTCACAAGTAA+CGG | 0.598819 | 8.4:+60400428 | MS.gene92390:CDS |
| AGCAGCAAAAGAGCTTGGAA+AGG | 0.622250 | 8.4:+60400350 | MS.gene92390:CDS |
| ACGTCCCCTTCTTGGCCGAG+TGG | 0.626832 | 8.4:+60400388 | MS.gene92390:CDS |
| TGAACAAGATGATTATGATG+AGG | 0.639505 | 8.4:-60401343 | None:intergenic |
| ATAACCGATTGTATGTAGCA+TGG | 0.649437 | 8.4:-60400313 | None:intergenic |
| CCGAGAAAATGACAAGCAGG+TGG | 0.650064 | 8.4:+60401311 | MS.gene92390:CDS |
| AGGATCGCTTAAAACCTGGT+AGG | 0.657593 | 8.4:-60395207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60393062 | 60401353 | 60393062 | ID=MS.gene92390 |
| chr8.4 | mRNA | 60393062 | 60401353 | 60393062 | ID=MS.gene92390.t1;Parent=MS.gene92390 |
| chr8.4 | exon | 60393062 | 60393148 | 60393062 | ID=MS.gene92390.t1.exon1;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60393062 | 60393148 | 60393062 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60394927 | 60394986 | 60394927 | ID=MS.gene92390.t1.exon2;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60394927 | 60394986 | 60394927 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60395194 | 60395276 | 60395194 | ID=MS.gene92390.t1.exon3;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60395194 | 60395276 | 60395194 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60398199 | 60398364 | 60398199 | ID=MS.gene92390.t1.exon4;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60398199 | 60398364 | 60398199 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60398466 | 60398595 | 60398466 | ID=MS.gene92390.t1.exon5;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60398466 | 60398595 | 60398466 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60400301 | 60400459 | 60400301 | ID=MS.gene92390.t1.exon6;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60400301 | 60400459 | 60400301 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60400550 | 60400722 | 60400550 | ID=MS.gene92390.t1.exon7;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60400550 | 60400722 | 60400550 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60401051 | 60401131 | 60401051 | ID=MS.gene92390.t1.exon8;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60401051 | 60401131 | 60401051 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| chr8.4 | exon | 60401273 | 60401353 | 60401273 | ID=MS.gene92390.t1.exon9;Parent=MS.gene92390.t1 |
| chr8.4 | CDS | 60401273 | 60401353 | 60401273 | ID=cds.MS.gene92390.t1;Parent=MS.gene92390.t1 |
| Gene Sequence |
| Protein sequence |
