AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96333


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96333.t1 MTR_4g127690 91.371 197 11 2 1 192 1 196 3.52e-107 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96333.t1 AT5G57345 57.447 188 72 4 5 192 9 188 3.95e-47 153

Find 58 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATACTATGGTGGTGGTT+GGG 0.312006 8.4:+6800318 MS.gene96333:CDS
AACAATCTTCAACTCCATTA+AGG 0.317786 8.4:+6798448 MS.gene96333:CDS
CCTGGTGCAAAGAAAGAAAA+TGG 0.328053 8.4:-6800349 None:intergenic
ACCAATTCTACCACCAGTTT+TGG 0.337468 8.4:-6798645 None:intergenic
GAATTGTTATTGTTGATTCT+TGG 0.352408 8.4:-6798707 None:intergenic
CCCCAACCACCACCATAGTA+TGG 0.355295 8.4:-6800319 None:intergenic
AAGAAGAATGAGAACAAGTT+AGG 0.368246 8.4:+6798554 MS.gene96333:CDS
TGCAGTTGTGAGGAAATTCT+TGG 0.380171 8.4:+6800444 MS.gene96333:CDS
CCATACTATGGTGGTGGTTG+GGG 0.384922 8.4:+6800319 MS.gene96333:CDS
CCTCCACTAGGTGGTGGATA+CGG 0.391006 8.4:+6800283 MS.gene96333:CDS
TGCCATACTATGGTGGTGGT+TGG 0.397465 8.4:+6800317 MS.gene96333:CDS
TCCTGCTGCTCCTAAAAGTT+GGG 0.413791 8.4:-6798377 None:intergenic
TACGGTGGTGTGCCATACTA+TGG 0.417463 8.4:+6800307 MS.gene96333:CDS
GAATCAACAATAACAATTCC+AGG 0.432239 8.4:+6798711 MS.gene96333:CDS
GATGCATCAGCTGCCAAAAC+TGG 0.451635 8.4:+6798632 MS.gene96333:CDS
GTCCTGCTGCTCCTAAAAGT+TGG 0.462508 8.4:-6798378 None:intergenic
GCCAAAACTGGTGGTAGAAT+TGG 0.463723 8.4:+6798644 MS.gene96333:CDS
CCACGGGTGGCGCCTCCACT+AGG 0.472801 8.4:+6800271 MS.gene96333:CDS
ACTATGGTGGTGGTTGGGGA+TGG 0.480924 8.4:+6800323 MS.gene96333:CDS
CTCCACTAGGTGGTGGATAC+GGG 0.491592 8.4:+6800284 MS.gene96333:CDS
TTGTTGATTCTTGGTGAGGA+AGG 0.491949 8.4:-6798698 None:intergenic
GCTGCTGGTGTGTTAACGTT+TGG 0.494174 8.4:+6798599 MS.gene96333:CDS
GCAATGATTGCAGTGGCTGC+TGG 0.497359 8.4:+6798584 MS.gene96333:CDS
CCGAGTGTTGCAGTAGGCGT+TGG 0.513639 8.4:+6800373 MS.gene96333:CDS
GTTGCAGTAGGCGTTGGAGG+TGG 0.519811 8.4:+6800379 MS.gene96333:CDS
AGTGTTGCAGTAGGCGTTGG+AGG 0.520000 8.4:+6800376 MS.gene96333:CDS
AAAGTTGGGTTAAGAAGTGT+TGG 0.530509 8.4:-6798363 None:intergenic
GTGGCGCCTCCACTAGGTGG+TGG 0.533635 8.4:+6800277 MS.gene96333:CDS
GCAGTTGTGAGGAAATTCTT+GGG 0.538440 8.4:+6800445 MS.gene96333:CDS
CTAGGTGGTGGATACGGGTA+CGG 0.541215 8.4:+6800289 MS.gene96333:CDS
GAAGTGTTGGTGAAGAGATG+AGG 0.545411 8.4:-6798350 None:intergenic
TGTTGATTCTTGGTGAGGAA+GGG 0.549367 8.4:-6798697 None:intergenic
CCGTGGATTTATATAGATGT+TGG 0.558960 8.4:-6800254 None:intergenic
CCTACTGCAACACTCGGACC+TGG 0.565214 8.4:-6800367 None:intergenic
GCGAGGAGCGGATGATCTGA+AGG 0.565349 8.4:-6798675 None:intergenic
GTGCTGCTGCTGCAGTTGTG+AGG 0.568041 8.4:+6800434 MS.gene96333:CDS
CCTAGTGGAGGCGCCACCCG+TGG 0.572068 8.4:-6800271 None:intergenic
CCAGGTCCGAGTGTTGCAGT+AGG 0.586325 8.4:+6800367 MS.gene96333:CDS
GGAGTTGAAGATTGTTGTTG+TGG 0.590399 8.4:-6798441 None:intergenic
ATTCTTGGTGAGGAAGGGCG+AGG 0.590888 8.4:-6798692 None:intergenic
AAAACTGGTGGTAGAATTGG+TGG 0.598132 8.4:+6798647 MS.gene96333:CDS
GAGGAAGCTTTGCTGTGACA+AGG 0.599879 8.4:-6798331 None:intergenic
CCAACGCCTACTGCAACACT+CGG 0.613463 8.4:-6800373 None:intergenic
GTTATTGTTGATTCTTGGTG+AGG 0.615397 8.4:-6798702 None:intergenic
CCAACATCTATATAAATCCA+CGG 0.616856 8.4:+6800254 MS.gene96333:CDS
TGGTGAGGAAGGGCGAGGAG+CGG 0.629460 8.4:-6798687 None:intergenic
CAACATCTATATAAATCCAC+GGG 0.636919 8.4:+6800255 MS.gene96333:CDS
GGTGTGCCATACTATGGTGG+TGG 0.643399 8.4:+6800313 MS.gene96333:CDS
CGGGTGGCGCCTCCACTAGG+TGG 0.653412 8.4:+6800274 MS.gene96333:CDS
AAAGTTAGCAATGATTGCAG+TGG 0.664147 8.4:+6798577 MS.gene96333:CDS
CATCTATATAAATCCACGGG+TGG 0.671598 8.4:+6800258 MS.gene96333:CDS
GGTGGTGGATACGGGTACGG+TGG 0.672411 8.4:+6800292 MS.gene96333:CDS
GTTGTGAGGAAATTCTTGGG+AGG 0.683288 8.4:+6800448 MS.gene96333:CDS
TACCCGTATCCACCACCTAG+TGG 0.684635 8.4:-6800286 None:intergenic
CAGCAGGACGAGGAAGACTG+TGG 0.702489 8.4:+6798392 MS.gene96333:CDS
GCATCAGCTGCCAAAACTGG+TGG 0.706688 8.4:+6798635 MS.gene96333:CDS
CCGTATCCACCACCTAGTGG+AGG 0.722573 8.4:-6800283 None:intergenic
GGTGGTGTGCCATACTATGG+TGG 0.778885 8.4:+6800310 MS.gene96333:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAAACAAAAAAAAT+TGG - chr8.4:6799895-6799914 None:intergenic 10.0%
!! TGATTATACTATATACTTAT+AGG + chr8.4:6798791-6798810 MS.gene96333:intron 15.0%
!! AAGGAAAAATAAATGTTTCT+AGG + chr8.4:6798746-6798765 MS.gene96333:intron 20.0%
!! AATATGATCTCTAATGATAT+AGG - chr8.4:6800070-6800089 None:intergenic 20.0%
!! AATGAAATCTCTTTCATAAT+TGG + chr8.4:6800096-6800115 MS.gene96333:intron 20.0%
!! TACAATTATCAACAAATACA+AGG - chr8.4:6799052-6799071 None:intergenic 20.0%
!!! TAGTTGTATTTTTCTTCTTT+GGG + chr8.4:6799159-6799178 MS.gene96333:intron 20.0%
!!! TATTTTTATACAGACAATGT+TGG + chr8.4:6799909-6799928 MS.gene96333:intron 20.0%
!!! TTCATTTTTGTTAGTTGTTT+AGG + chr8.4:6799221-6799240 MS.gene96333:intron 20.0%
!!! TTTAGTCTTATTCTGAAAAT+AGG + chr8.4:6799859-6799878 MS.gene96333:intron 20.0%
! AAAAAAAAGAAAGCCTCATT+TGG - chr8.4:6799536-6799555 None:intergenic 25.0%
! AAATCTCTTTCATAATTGGA+AGG + chr8.4:6800100-6800119 MS.gene96333:intron 25.0%
! ACTAAGGAGTTTATAAATGA+TGG - chr8.4:6799456-6799475 None:intergenic 25.0%
! AGTTTAATTATGATACCTAC+GGG - chr8.4:6799012-6799031 None:intergenic 25.0%
! CAGTTTAATTATGATACCTA+CGG - chr8.4:6799013-6799032 None:intergenic 25.0%
! GTAGAAATATATCTGTTAGT+TGG + chr8.4:6799714-6799733 MS.gene96333:intron 25.0%
! TAATACTACCTAGAGAAAAT+AGG - chr8.4:6798860-6798879 None:intergenic 25.0%
! TCATGTTTACGATATTAGTT+GGG + chr8.4:6799281-6799300 MS.gene96333:intron 25.0%
! TGACAAACAGGTAAATAAAA+AGG - chr8.4:6799559-6799578 None:intergenic 25.0%
! TTGTACATTTGGTTATACTT+CGG + chr8.4:6799320-6799339 MS.gene96333:intron 25.0%
!! GTAGTTGTATTTTTCTTCTT+TGG + chr8.4:6799158-6799177 MS.gene96333:intron 25.0%
!! TTTTGATGTAGTTACCTTAA+TGG - chr8.4:6798465-6798484 None:intergenic 25.0%
!!! GAATTGTTATTGTTGATTCT+TGG - chr8.4:6798710-6798729 None:intergenic 25.0%
!!! TAGCGCTTTCATTTTTTTTA+GGG + chr8.4:6799653-6799672 MS.gene96333:intron 25.0%
!!! TTAGCGCTTTCATTTTTTTT+AGG + chr8.4:6799652-6799671 MS.gene96333:intron 25.0%
AACAATCTTCAACTCCATTA+AGG + chr8.4:6798448-6798467 MS.gene96333:CDS 30.0%
AAGAAGAATGAGAACAAGTT+AGG + chr8.4:6798554-6798573 MS.gene96333:CDS 30.0%
AGTATGCGTTAGAAATTAAG+AGG - chr8.4:6799825-6799844 None:intergenic 30.0%
CAACATCTATATAAATCCAC+GGG + chr8.4:6800255-6800274 MS.gene96333:CDS 30.0%
CAACTAATATCGTAAACATG+AGG - chr8.4:6799282-6799301 None:intergenic 30.0%
CCAACATCTATATAAATCCA+CGG + chr8.4:6800254-6800273 MS.gene96333:CDS 30.0%
CCAACTGAGATATATACTTA+AGG + chr8.4:6800014-6800033 MS.gene96333:intron 30.0%
CCTTAAGTATATATCTCAGT+TGG - chr8.4:6800017-6800036 None:intergenic 30.0%
CGTAGGTATCATAATTAAAC+TGG + chr8.4:6799011-6799030 MS.gene96333:intron 30.0%
CTAACAAAAATGAAGACTTG+TGG - chr8.4:6799215-6799234 None:intergenic 30.0%
CTAGAGAAAATAGGTTAGAA+TGG - chr8.4:6798851-6798870 None:intergenic 30.0%
CTCATGTTTACGATATTAGT+TGG + chr8.4:6799280-6799299 MS.gene96333:intron 30.0%
GAATCAACAATAACAATTCC+AGG + chr8.4:6798711-6798730 MS.gene96333:CDS 30.0%
GAATTCCAAAATTTGCATCA+AGG - chr8.4:6798922-6798941 None:intergenic 30.0%
GGTTAAAAAGTTCGAACAAA+TGG + chr8.4:6799419-6799438 MS.gene96333:intron 30.0%
GTTTGAACTTGAGTATTAGA+GGG + chr8.4:6799256-6799275 MS.gene96333:intron 30.0%
TGTTTGAACTTGAGTATTAG+AGG + chr8.4:6799255-6799274 MS.gene96333:intron 30.0%
TTCCAGGTATCTAACAAAAA+AGG + chr8.4:6798727-6798746 MS.gene96333:intron 30.0%
! CATTCTAACCTATTTTCTCT+AGG + chr8.4:6798849-6798868 MS.gene96333:intron 30.0%
! CTGTTTGTCACTTAGATATT+CGG + chr8.4:6799569-6799588 MS.gene96333:intron 30.0%
! GATATATTTCTACACTCCAT+TGG - chr8.4:6799707-6799726 None:intergenic 30.0%
! TTTGCTTTGTTATACTTGCA+TGG + chr8.4:6798506-6798525 MS.gene96333:intron 30.0%
!! TGAAAGCGCTAAAATTTGAA+AGG - chr8.4:6799644-6799663 None:intergenic 30.0%
!!! CTGCTTCTGTTTATGTTTTT+TGG + chr8.4:6800412-6800431 MS.gene96333:CDS 30.0%
!!! GATATTCGGTTTTTTCTTCT+AGG + chr8.4:6799583-6799602 MS.gene96333:intron 30.0%
!!! TTCCTTTTTTGTTAGATACC+TGG - chr8.4:6798732-6798751 None:intergenic 30.0%
AAAGTTAGCAATGATTGCAG+TGG + chr8.4:6798577-6798596 MS.gene96333:CDS 35.0%
ACAACAACTATAGCGACAAA+AGG - chr8.4:6799080-6799099 None:intergenic 35.0%
ACAATGTTACCACACTCTAT+TGG - chr8.4:6799364-6799383 None:intergenic 35.0%
ACTAAAGAGGGTTGTACATT+TGG + chr8.4:6799309-6799328 MS.gene96333:intron 35.0%
CAATGTTACCACACTCTATT+GGG - chr8.4:6799363-6799382 None:intergenic 35.0%
CCGTGGATTTATATAGATGT+TGG - chr8.4:6800257-6800276 None:intergenic 35.0%
CGAAATTAAGAAGTCTCACT+CGG - chr8.4:6799493-6799512 None:intergenic 35.0%
CGAATATCTAAGTGACAAAC+AGG - chr8.4:6799571-6799590 None:intergenic 35.0%
GGTGAAAACAAGGAAAACTA+AGG - chr8.4:6799472-6799491 None:intergenic 35.0%
TCCAACAAAATGAGACAGAT+AGG - chr8.4:6800194-6800213 None:intergenic 35.0%
TGCAACTACAAACTATGCTT+AGG - chr8.4:6798944-6798963 None:intergenic 35.0%
TTCCAAAATTTGCATCAAGG+AGG - chr8.4:6798919-6798938 None:intergenic 35.0%
! AAAGTTGGGTTAAGAAGTGT+TGG - chr8.4:6798366-6798385 None:intergenic 35.0%
! ACCTATCTGTCTCATTTTGT+TGG + chr8.4:6800190-6800209 MS.gene96333:intron 35.0%
! CACTTCTTAACCCAACTTTT+AGG + chr8.4:6798367-6798386 MS.gene96333:CDS 35.0%
!! AGTCCATTGGTTTGAACTAT+TGG - chr8.4:6799760-6799779 None:intergenic 35.0%
!! ATGGAGAATTTTGAGTCCAT+TGG - chr8.4:6799773-6799792 None:intergenic 35.0%
!! GTTATTGTTGATTCTTGGTG+AGG - chr8.4:6798705-6798724 None:intergenic 35.0%
!!! ACATGGAAGCAGTTTTAAGT+AGG - chr8.4:6799983-6800002 None:intergenic 35.0%
AAAACTGGTGGTAGAATTGG+TGG + chr8.4:6798647-6798666 MS.gene96333:CDS 40.0%
AAAGCCTCATTTGGACTTGA+GGG - chr8.4:6799527-6799546 None:intergenic 40.0%
CATCTATATAAATCCACGGG+TGG + chr8.4:6800258-6800277 MS.gene96333:CDS 40.0%
CCTGGTGCAAAGAAAGAAAA+TGG - chr8.4:6800352-6800371 None:intergenic 40.0%
GCAGTTGTGAGGAAATTCTT+GGG + chr8.4:6800445-6800464 MS.gene96333:CDS 40.0%
GGTCCAATAGTTCAAACCAA+TGG + chr8.4:6799754-6799773 MS.gene96333:intron 40.0%
GTGGGAACATGGAAAAGTAA+TGG - chr8.4:6799792-6799811 None:intergenic 40.0%
GTGGTAACATTGTGAGTAGT+TGG + chr8.4:6799371-6799390 MS.gene96333:intron 40.0%
TAGTTGGCATTCTCAAGAGT+AGG + chr8.4:6799730-6799749 MS.gene96333:intron 40.0%
TGCAGTTGTGAGGAAATTCT+TGG + chr8.4:6800444-6800463 MS.gene96333:CDS 40.0%
TTTCGTATCTGTATGTCGAC+AGG + chr8.4:6800230-6800249 MS.gene96333:intron 40.0%
! ACCAATTCTACCACCAGTTT+TGG - chr8.4:6798648-6798667 None:intergenic 40.0%
! CCATTTTCTTTCTTTGCACC+AGG + chr8.4:6800349-6800368 MS.gene96333:CDS 40.0%
! CGCTAAAATTTGAAAGGTGC+AGG - chr8.4:6799638-6799657 None:intergenic 40.0%
! CTCCTCCTTGATGCAAATTT+TGG + chr8.4:6798914-6798933 MS.gene96333:intron 40.0%
! GGAGTTGAAGATTGTTGTTG+TGG - chr8.4:6798444-6798463 None:intergenic 40.0%
! TGTACAACCCTCTTTAGTTC+AGG - chr8.4:6799307-6799326 None:intergenic 40.0%
! TGTTCGAACTTTTTAACCGC+TGG - chr8.4:6799417-6799436 None:intergenic 40.0%
! TTGGTGTTCTTAAGTGTAGC+AGG + chr8.4:6799390-6799409 MS.gene96333:intron 40.0%
! TTTTCTTCTAGGCTTGTGAG+AGG + chr8.4:6799594-6799613 MS.gene96333:intron 40.0%
!! AGTTGGTGAGATAAGAGACA+TGG - chr8.4:6800000-6800019 None:intergenic 40.0%
!! GTTGTTGTTTGTCTCCTTGT+CGG + chr8.4:6799092-6799111 MS.gene96333:intron 40.0%
!! TGTTGATTCTTGGTGAGGAA+GGG - chr8.4:6798700-6798719 None:intergenic 40.0%
!! TTGTTGATTCTTGGTGAGGA+AGG - chr8.4:6798701-6798720 None:intergenic 40.0%
!! TTTTTAGGGACCAGTGAATG+AGG + chr8.4:6799667-6799686 MS.gene96333:intron 40.0%
AAGCCTCATTTGGACTTGAG+GGG - chr8.4:6799526-6799545 None:intergenic 45.0%
ACCACACTCTATTGGGTCTT+TGG - chr8.4:6799356-6799375 None:intergenic 45.0%
AGAGCAAGAAGACCCAGTTA+CGG - chr8.4:6799137-6799156 None:intergenic 45.0%
AGTTGGGCCTGAACTAAAGA+GGG + chr8.4:6799297-6799316 MS.gene96333:intron 45.0%
ATACCTACGGGCATCAATGT+CGG - chr8.4:6799000-6799019 None:intergenic 45.0%
GAAAGCCTCATTTGGACTTG+AGG - chr8.4:6799528-6799547 None:intergenic 45.0%
GAAGACTTCTGACCGTAACT+GGG + chr8.4:6799122-6799141 MS.gene96333:intron 45.0%
GCCAAAACTGGTGGTAGAAT+TGG + chr8.4:6798644-6798663 MS.gene96333:CDS 45.0%
GTTGTGAGGAAATTCTTGGG+AGG + chr8.4:6800448-6800467 MS.gene96333:CDS 45.0%
TAGTTGGGCCTGAACTAAAG+AGG + chr8.4:6799296-6799315 MS.gene96333:intron 45.0%
TCCAAAGACCCAATAGAGTG+TGG + chr8.4:6799352-6799371 MS.gene96333:intron 45.0%
TCCTGCTGCTCCTAAAAGTT+GGG - chr8.4:6798380-6798399 None:intergenic 45.0%
TGAAGACTTCTGACCGTAAC+TGG + chr8.4:6799121-6799140 MS.gene96333:intron 45.0%
TTGGCATTCTCAAGAGTAGG+AGG + chr8.4:6799733-6799752 MS.gene96333:intron 45.0%
! AGTCTCACTCGGTGAAAACA+AGG - chr8.4:6799482-6799501 None:intergenic 45.0%
!! GAAGTGTTGGTGAAGAGATG+AGG - chr8.4:6798353-6798372 None:intergenic 45.0%
!! TTTCTACACTCCATTGGCTC+TGG - chr8.4:6799701-6799720 None:intergenic 45.0%
!! CTTAAATATTATATATAAAT+AGG + chr8.4:6798531-6798550 MS.gene96333:intron 5.0%
AGCCTCATTTGGACTTGAGG+GGG - chr8.4:6799525-6799544 None:intergenic 50.0%
AGTCTTCACCAAAGCCGACA+AGG - chr8.4:6799109-6799128 None:intergenic 50.0%
ATTAAGAGGTCCCACACGTG+TGG - chr8.4:6799811-6799830 None:intergenic 50.0%
CTTAAGTGTAGCAGGTCCAG+CGG + chr8.4:6799398-6799417 MS.gene96333:intron 50.0%
GATGCATCAGCTGCCAAAAC+TGG + chr8.4:6798632-6798651 MS.gene96333:CDS 50.0%
GCTGCTGGTGTGTTAACGTT+TGG + chr8.4:6798599-6798618 MS.gene96333:CDS 50.0%
GGTATCAGAGCCTCATTCAC+TGG - chr8.4:6799680-6799699 None:intergenic 50.0%
GTCCTGCTGCTCCTAAAAGT+TGG - chr8.4:6798381-6798400 None:intergenic 50.0%
TACGGTGGTGTGCCATACTA+TGG + chr8.4:6800307-6800326 MS.gene96333:CDS 50.0%
TTAAGAGGTCCCACACGTGT+GGG - chr8.4:6799810-6799829 None:intergenic 50.0%
TTCCATGTTCCCACACGTGT+GGG + chr8.4:6799798-6799817 MS.gene96333:intron 50.0%
TTTCCATGTTCCCACACGTG+TGG + chr8.4:6799797-6799816 MS.gene96333:intron 50.0%
! GAGGAAGCTTTGCTGTGACA+AGG - chr8.4:6798334-6798353 None:intergenic 50.0%
! TTTGCATCAAGGAGGAGCGT+TGG - chr8.4:6798911-6798930 None:intergenic 50.0%
!! ACCCAACTTTTAGGAGCAGC+AGG + chr8.4:6798376-6798395 MS.gene96333:CDS 50.0%
!! CCATACTATGGTGGTGGTTG+GGG + chr8.4:6800319-6800338 MS.gene96333:CDS 50.0%
!! GCCATACTATGGTGGTGGTT+GGG + chr8.4:6800318-6800337 MS.gene96333:CDS 50.0%
!! GTTTGTCTCCTTGTCGGCTT+TGG + chr8.4:6799098-6799117 MS.gene96333:intron 50.0%
!! TGCCATACTATGGTGGTGGT+TGG + chr8.4:6800317-6800336 MS.gene96333:CDS 50.0%
ATTCTTGGTGAGGAAGGGCG+AGG - chr8.4:6798695-6798714 None:intergenic 55.0%
CCAACGCCTACTGCAACACT+CGG - chr8.4:6800376-6800395 None:intergenic 55.0%
CCCCAACCACCACCATAGTA+TGG - chr8.4:6800322-6800341 None:intergenic 55.0%
GCAATGATTGCAGTGGCTGC+TGG + chr8.4:6798584-6798603 MS.gene96333:CDS 55.0%
GCATCAGCTGCCAAAACTGG+TGG + chr8.4:6798635-6798654 MS.gene96333:CDS 55.0%
GCCTCATTTGGACTTGAGGG+GGG - chr8.4:6799524-6799543 None:intergenic 55.0%
GGTGGTGTGCCATACTATGG+TGG + chr8.4:6800310-6800329 MS.gene96333:CDS 55.0%
GGTGTGCCATACTATGGTGG+TGG + chr8.4:6800313-6800332 MS.gene96333:CDS 55.0%
TACCCGTATCCACCACCTAG+TGG - chr8.4:6800289-6800308 None:intergenic 55.0%
TCCCCCCTCAAGTCCAAATG+AGG + chr8.4:6799520-6799539 MS.gene96333:intron 55.0%
! GGCTCTGATACCAGAGCCAA+TGG + chr8.4:6799688-6799707 MS.gene96333:intron 55.0%
!! ACTATGGTGGTGGTTGGGGA+TGG + chr8.4:6800323-6800342 MS.gene96333:CDS 55.0%
!! AGTGTTGCAGTAGGCGTTGG+AGG + chr8.4:6800376-6800395 MS.gene96333:CDS 55.0%
!! CCTCCACTAGGTGGTGGATA+CGG + chr8.4:6800283-6800302 MS.gene96333:CDS 55.0%
!! CTAGGTGGTGGATACGGGTA+CGG + chr8.4:6800289-6800308 MS.gene96333:CDS 55.0%
!! CTCCACTAGGTGGTGGATAC+GGG + chr8.4:6800284-6800303 MS.gene96333:CDS 55.0%
!! CTTTTAGGAGCAGCAGGACG+AGG + chr8.4:6798382-6798401 MS.gene96333:CDS 55.0%
CAGCAGGACGAGGAAGACTG+TGG + chr8.4:6798392-6798411 MS.gene96333:CDS 60.0%
CCGTATCCACCACCTAGTGG+AGG - chr8.4:6800286-6800305 None:intergenic 60.0%
CCTACGGGCATCAATGTCGG+AGG - chr8.4:6798997-6799016 None:intergenic 60.0%
CCTACTGCAACACTCGGACC+TGG - chr8.4:6800370-6800389 None:intergenic 60.0%
CCTCCGACATTGATGCCCGT+AGG + chr8.4:6798994-6799013 MS.gene96333:intron 60.0%
CTAGGCTTGTGAGAGGTCCC+TGG + chr8.4:6799601-6799620 MS.gene96333:intron 60.0%
GCGAGGAGCGGATGATCTGA+AGG - chr8.4:6798678-6798697 None:intergenic 60.0%
GTCCCACACGTGTGGGAACA+TGG - chr8.4:6799803-6799822 None:intergenic 60.0%
! CCAGGTCCGAGTGTTGCAGT+AGG + chr8.4:6800367-6800386 MS.gene96333:CDS 60.0%
! CCGAGTGTTGCAGTAGGCGT+TGG + chr8.4:6800373-6800392 MS.gene96333:CDS 60.0%
! GAAAGGTGCAGGTAGCCGCA+CGG - chr8.4:6799627-6799646 None:intergenic 60.0%
! GTGCTGCTGCTGCAGTTGTG+AGG + chr8.4:6800434-6800453 MS.gene96333:CDS 60.0%
!! GTTGCAGTAGGCGTTGGAGG+TGG + chr8.4:6800379-6800398 MS.gene96333:CDS 60.0%
TGGTGAGGAAGGGCGAGGAG+CGG - chr8.4:6798690-6798709 None:intergenic 65.0%
!! GGTGGTGGATACGGGTACGG+TGG + chr8.4:6800292-6800311 MS.gene96333:CDS 65.0%
GTGAGAGGTCCCTGGCCGTG+CGG + chr8.4:6799609-6799628 MS.gene96333:intron 70.0%
GTGGCGCCTCCACTAGGTGG+TGG + chr8.4:6800277-6800296 MS.gene96333:CDS 70.0%
TGCAGGTAGCCGCACGGCCA+GGG - chr8.4:6799621-6799640 None:intergenic 70.0%
CCACGGGTGGCGCCTCCACT+AGG + chr8.4:6800271-6800290 MS.gene96333:CDS 75.0%
CGGGTGGCGCCTCCACTAGG+TGG + chr8.4:6800274-6800293 MS.gene96333:CDS 75.0%
GTGCAGGTAGCCGCACGGCC+AGG - chr8.4:6799622-6799641 None:intergenic 75.0%
!! CCTAGTGGAGGCGCCACCCG+TGG - chr8.4:6800274-6800293 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 6798324 6800504 6798324 ID=MS.gene96333
chr8.4 mRNA 6798324 6800504 6798324 ID=MS.gene96333.t1;Parent=MS.gene96333
chr8.4 exon 6798324 6798469 6798324 ID=MS.gene96333.t1.exon1;Parent=MS.gene96333.t1
chr8.4 CDS 6798324 6798469 6798324 ID=cds.MS.gene96333.t1;Parent=MS.gene96333.t1
chr8.4 exon 6798553 6798732 6798553 ID=MS.gene96333.t1.exon2;Parent=MS.gene96333.t1
chr8.4 CDS 6798553 6798732 6798553 ID=cds.MS.gene96333.t1;Parent=MS.gene96333.t1
chr8.4 exon 6800252 6800504 6800252 ID=MS.gene96333.t1.exon3;Parent=MS.gene96333.t1
chr8.4 CDS 6800252 6800504 6800252 ID=cds.MS.gene96333.t1;Parent=MS.gene96333.t1
Gene Sequence

>MS.gene96333

ATGTGTTCCTTGTCACAGCAAAGCTTCCTCATCTCTTCACCAACACTTCTTAACCCAACTTTTAGGAGCAGCAGGACGAGGAAGACTGTGGTTGTTGTCTACTGCAGTTGCACACAGCCACAACAACAATCTTCAACTCCATTAAGGTAACTACATCAAAACACTAGTTCATACAGTATTTGTTTGCTTTGTTATACTTGCATGGTGCTTAAATATTATATATAAATAGGAAGAAGAATGAGAACAAGTTAGGAAAGTTAGCAATGATTGCAGTGGCTGCTGGTGTGTTAACGTTTGGATCAGTTCATGATGCATCAGCTGCCAAAACTGGTGGTAGAATTGGTGGTCAGTCCTTCAGATCATCCGCTCCTCGCCCTTCCTCACCAAGAATCAACAATAACAATTCCAGGTATCTAACAAAAAAGGAAAAATAAATGTTTCTAGGATTTTCATTACATTTTTGCATTTGATTATACTATATACTTATAGGCTTATTTGATTTAGTATTATTACAACATTCTAGACCATTCTAACCTATTTTCTCTAGGTAGTATTAAATTATTCTAGATATTTGCATCACATCTCCAACGCTCCTCCTTGATGCAAATTTTGGAATTCCTAAGCATAGTTTGTAGTTGCAGTTGCTTATGTTTCTGTTATGAAATTATCTCCTCCGACATTGATGCCCGTAGGTATCATAATTAAACTGGAAAATATTGCATTCACCTTGTATTTGTTGATAATTGTATCACACCTTTTGTCGCTATAGTTGTTGTTTGTCTCCTTGTCGGCTTTGGTGAAGACTTCTGACCGTAACTGGGTCTTCTTGCTCTAGTAGTTGTATTTTTCTTCTTTGGGCTTGTACATACTCAAGCTGAGACTCAGAAGCCACAAGTCTTCATTTTTGTTAGTTGTTTAGGCTTCTGTGTTTTGTTTGAACTTGAGTATTAGAGGGCCTCATGTTTACGATATTAGTTGGGCCTGAACTAAAGAGGGTTGTACATTTGGTTATACTTCGGATGAATTATTCCAAAGACCCAATAGAGTGTGGTAACATTGTGAGTAGTTGGTGTTCTTAAGTGTAGCAGGTCCAGCGGTTAAAAAGTTCGAACAAATGGACTCAAACTCTCCATCATTTATAAACTCCTTAGTTTTCCTTGTTTTCACCGAGTGAGACTTCTTAATTTCGAACTCTCTCCCCCCTCAAGTCCAAATGAGGCTTTCTTTTTTTTCCTTTTTATTTACCTGTTTGTCACTTAGATATTCGGTTTTTTCTTCTAGGCTTGTGAGAGGTCCCTGGCCGTGCGGCTACCTGCACCTTTCAAATTTTAGCGCTTTCATTTTTTTTAGGGACCAGTGAATGAGGCTCTGATACCAGAGCCAATGGAGTGTAGAAATATATCTGTTAGTTGGCATTCTCAAGAGTAGGAGGTCCAATAGTTCAAACCAATGGACTCAAAATTCTCCATTACTTTTCCATGTTCCCACACGTGTGGGACCTCTTAATTTCTAACGCATACTAAAATAGAAAAATGTTTAGTCTTATTCTGAAAATAGGTGCATCTTTTCCAATTTTTTTTGTTTCTATTTTTATACAGACAATGTTGGAAAGTTAGTGATTAGTTAATTTTCAAAGTTTGAAGTTTGAACTCTATACCTACTTAAAACTGCTTCCATGTCTCTTATCTCACCAACTGAGATATATACTTAAGGACTATTTTTGTGCAGTTAACATATGATTGTCCTATATCATTAGAGATCATATTAAAAGAAATGAAATCTCTTTCATAATTGGAAGGAAATTTAATTCAATAACTTCATATATTATATGATCACTTGTGTACAACTAAAAGAAGACAATGTTTCACCTATCTGTCTCATTTTGTTGGAATCTTGTTTCTGAAAATTTCGTATCTGTATGTCGACAGGACCAACATCTATATAAATCCACGGGTGGCGCCTCCACTAGGTGGTGGATACGGGTACGGTGGTGTGCCATACTATGGTGGTGGTTGGGGATGGTCTCCATTTTCTTTCTTTGCACCAGGTCCGAGTGTTGCAGTAGGCGTTGGAGGTGGATTTGATACTCTGCTTCTGTTTATGTTTTTTGGTGCTGCTGCTGCAGTTGTGAGGAAATTCTTGGGAGGATCAAGAAATGTTGATGAAGATGATGATTACTAG

Protein sequence

>MS.gene96333.t1

MCSLSQQSFLISSPTLLNPTFRSSRTRKTVVVVYCSCTQPQQQSSTPLRKKNENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTNIYINPRVAPPLGGGYGYGGVPYYGGGWGWSPFSFFAPGPSVAVGVGGGFDTLLLFMFFGAAAAVVRKFLGGSRNVDEDDDY