Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96333.t1 | XP_003610078.1 | 91.6 | 131 | 5 | 2 | 1 | 126 | 1 | 130 | 7.60E-54 | 220.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96333.t1 | B7FME6 | 91.6 | 131 | 5 | 2 | 1 | 126 | 1 | 130 | 5.5e-54 | 220.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene96333 | 0.808945 | 2.41E-50 | -1.69E-46 |
MS.gene049356 | MS.gene96333 | 0.863641 | 2.15E-64 | -1.69E-46 |
MS.gene049369 | MS.gene96333 | 0.86439 | 1.26E-64 | -1.69E-46 |
MS.gene049609 | MS.gene96333 | 0.825176 | 5.41E-54 | -1.69E-46 |
MS.gene049805 | MS.gene96333 | 0.863864 | 1.84E-64 | -1.69E-46 |
MS.gene050060 | MS.gene96333 | 0.831122 | 2.00E-55 | -1.69E-46 |
MS.gene050301 | MS.gene96333 | 0.800139 | 1.66E-48 | -1.69E-46 |
MS.gene050432 | MS.gene96333 | 0.817015 | 4.11E-52 | -1.69E-46 |
MS.gene050444 | MS.gene96333 | 0.808082 | 3.69E-50 | -1.69E-46 |
MS.gene050593 | MS.gene96333 | 0.805453 | 1.33E-49 | -1.69E-46 |
MS.gene050670 | MS.gene96333 | 0.834291 | 3.26E-56 | -1.69E-46 |
MS.gene050767 | MS.gene96333 | 0.812518 | 4.07E-51 | -1.69E-46 |
MS.gene050770 | MS.gene96333 | 0.815947 | 7.12E-52 | -1.69E-46 |
MS.gene050772 | MS.gene96333 | 0.832714 | 8.07E-56 | -1.69E-46 |
MS.gene05105 | MS.gene96333 | 0.872483 | 3.07E-67 | -1.69E-46 |
MS.gene051228 | MS.gene96333 | 0.856823 | 2.48E-62 | -1.69E-46 |
MS.gene051666 | MS.gene96333 | 0.825567 | 4.37E-54 | -1.69E-46 |
MS.gene051692 | MS.gene96333 | 0.81434 | 1.62E-51 | -1.69E-46 |
MS.gene051858 | MS.gene96333 | 0.806141 | 9.50E-50 | -1.69E-46 |
MS.gene051874 | MS.gene96333 | 0.804049 | 2.60E-49 | -1.69E-46 |
MS.gene052078 | MS.gene96333 | 0.818168 | 2.26E-52 | -1.69E-46 |
MS.gene052188 | MS.gene96333 | 0.866041 | 3.81E-65 | -1.69E-46 |
MS.gene052253 | MS.gene96333 | 0.800117 | 1.68E-48 | -1.69E-46 |
MS.gene052271 | MS.gene96333 | 0.814334 | 1.62E-51 | -1.69E-46 |
MS.gene052290 | MS.gene96333 | 0.838128 | 3.46E-57 | -1.69E-46 |
MS.gene052310 | MS.gene96333 | 0.857516 | 1.55E-62 | -1.69E-46 |
MS.gene052322 | MS.gene96333 | 0.807713 | 4.42E-50 | -1.69E-46 |
MS.gene052340 | MS.gene96333 | 0.848257 | 6.88E-60 | -1.69E-46 |
MS.gene052379 | MS.gene96333 | 0.808488 | 3.02E-50 | -1.69E-46 |
MS.gene052421 | MS.gene96333 | 0.858726 | 6.76E-63 | -1.69E-46 |
MS.gene052484 | MS.gene96333 | 0.821303 | 4.34E-53 | -1.69E-46 |
MS.gene052485 | MS.gene96333 | 0.820914 | 5.33E-53 | -1.69E-46 |
MS.gene052615 | MS.gene96333 | 0.823351 | 1.45E-53 | -1.69E-46 |
MS.gene052870 | MS.gene96333 | 0.838692 | 2.47E-57 | -1.69E-46 |
MS.gene052872 | MS.gene96333 | 0.829067 | 6.33E-55 | -1.69E-46 |
MS.gene053009 | MS.gene96333 | 0.816122 | 6.51E-52 | -1.69E-46 |
MS.gene053103 | MS.gene96333 | 0.871325 | 7.45E-67 | -1.69E-46 |
MS.gene053104 | MS.gene96333 | 0.837003 | 6.71E-57 | -1.69E-46 |
MS.gene053207 | MS.gene96333 | 0.811904 | 5.54E-51 | -1.69E-46 |
MS.gene053209 | MS.gene96333 | 0.858744 | 6.67E-63 | -1.69E-46 |
MS.gene053322 | MS.gene96333 | 0.82245 | 2.35E-53 | -1.69E-46 |
MS.gene053384 | MS.gene96333 | 0.81986 | 9.31E-53 | -1.69E-46 |
MS.gene053449 | MS.gene96333 | 0.865225 | 6.89E-65 | -1.69E-46 |
MS.gene053557 | MS.gene96333 | 0.815638 | 8.35E-52 | -1.69E-46 |
MS.gene053632 | MS.gene96333 | 0.835517 | 1.60E-56 | -1.69E-46 |
MS.gene053813 | MS.gene96333 | 0.808865 | 2.51E-50 | -1.69E-46 |
MS.gene053824 | MS.gene96333 | 0.814162 | 1.77E-51 | -1.69E-46 |
MS.gene053912 | MS.gene96333 | 0.866835 | 2.13E-65 | -1.69E-46 |
MS.gene053916 | MS.gene96333 | 0.872596 | 2.82E-67 | -1.69E-46 |
MS.gene054123 | MS.gene96333 | 0.835719 | 1.42E-56 | -1.69E-46 |
MS.gene054600 | MS.gene96333 | 0.800472 | 1.42E-48 | -1.69E-46 |
MS.gene05494 | MS.gene96333 | 0.842738 | 2.15E-58 | -1.69E-46 |
MS.gene054955 | MS.gene96333 | 0.810556 | 1.09E-50 | -1.69E-46 |
MS.gene05505 | MS.gene96333 | 0.871678 | 5.69E-67 | -1.69E-46 |
MS.gene055116 | MS.gene96333 | 0.827938 | 1.19E-54 | -1.69E-46 |
MS.gene055206 | MS.gene96333 | 0.822808 | 1.94E-53 | -1.69E-46 |
MS.gene055224 | MS.gene96333 | 0.808132 | 3.60E-50 | -1.69E-46 |
MS.gene055254 | MS.gene96333 | 0.818991 | 1.47E-52 | -1.69E-46 |
MS.gene055289 | MS.gene96333 | 0.801066 | 1.07E-48 | -1.69E-46 |
MS.gene055397 | MS.gene96333 | 0.822781 | 1.97E-53 | -1.69E-46 |
MS.gene055412 | MS.gene96333 | 0.84132 | 5.10E-58 | -1.69E-46 |
MS.gene055722 | MS.gene96333 | 0.830748 | 2.47E-55 | -1.69E-46 |
MS.gene055741 | MS.gene96333 | 0.803332 | 3.67E-49 | -1.69E-46 |
MS.gene055744 | MS.gene96333 | 0.805279 | 1.44E-49 | -1.69E-46 |
MS.gene05592 | MS.gene96333 | 0.869824 | 2.32E-66 | -1.69E-46 |
MS.gene055941 | MS.gene96333 | 0.833006 | 6.83E-56 | -1.69E-46 |
MS.gene056407 | MS.gene96333 | 0.808636 | 2.81E-50 | -1.69E-46 |
MS.gene056422 | MS.gene96333 | 0.809261 | 2.06E-50 | -1.69E-46 |
MS.gene056487 | MS.gene96333 | 0.808806 | 2.58E-50 | -1.69E-46 |
MS.gene056511 | MS.gene96333 | 0.838138 | 3.44E-57 | -1.69E-46 |
MS.gene056609 | MS.gene96333 | 0.883772 | 3.38E-71 | -1.69E-46 |
MS.gene056659 | MS.gene96333 | 0.825606 | 4.28E-54 | -1.69E-46 |
MS.gene056719 | MS.gene96333 | 0.854403 | 1.26E-61 | -1.69E-46 |
MS.gene056897 | MS.gene96333 | 0.832191 | 1.09E-55 | -1.69E-46 |
MS.gene057076 | MS.gene96333 | 0.857072 | 2.09E-62 | -1.69E-46 |
MS.gene057123 | MS.gene96333 | 0.801792 | 7.62E-49 | -1.69E-46 |
MS.gene057124 | MS.gene96333 | 0.840099 | 1.07E-57 | -1.69E-46 |
MS.gene057129 | MS.gene96333 | 0.846329 | 2.33E-59 | -1.69E-46 |
MS.gene057331 | MS.gene96333 | 0.802282 | 6.04E-49 | -1.69E-46 |
MS.gene05735 | MS.gene96333 | 0.841385 | 4.91E-58 | -1.69E-46 |
MS.gene057416 | MS.gene96333 | 0.818534 | 1.86E-52 | -1.69E-46 |
MS.gene057448 | MS.gene96333 | 0.801124 | 1.04E-48 | -1.69E-46 |
MS.gene057450 | MS.gene96333 | 0.812037 | 5.19E-51 | -1.69E-46 |
MS.gene057537 | MS.gene96333 | 0.815296 | 9.94E-52 | -1.69E-46 |
MS.gene057734 | MS.gene96333 | 0.810983 | 8.79E-51 | -1.69E-46 |
MS.gene057749 | MS.gene96333 | 0.811054 | 8.48E-51 | -1.69E-46 |
MS.gene057823 | MS.gene96333 | 0.823623 | 1.25E-53 | -1.69E-46 |
MS.gene057926 | MS.gene96333 | 0.80979 | 1.59E-50 | -1.69E-46 |
MS.gene057927 | MS.gene96333 | 0.825708 | 4.05E-54 | -1.69E-46 |
MS.gene058006 | MS.gene96333 | 0.812439 | 4.24E-51 | -1.69E-46 |
MS.gene058007 | MS.gene96333 | 0.801489 | 8.79E-49 | -1.69E-46 |
MS.gene058019 | MS.gene96333 | 0.811076 | 8.39E-51 | -1.69E-46 |
MS.gene058082 | MS.gene96333 | 0.824271 | 8.83E-54 | -1.69E-46 |
MS.gene058120 | MS.gene96333 | 0.801199 | 1.01E-48 | -1.69E-46 |
MS.gene058293 | MS.gene96333 | 0.840626 | 7.77E-58 | -1.69E-46 |
MS.gene058365 | MS.gene96333 | 0.817906 | 2.59E-52 | -1.69E-46 |
MS.gene058419 | MS.gene96333 | 0.800051 | 1.73E-48 | -1.69E-46 |
MS.gene058459 | MS.gene96333 | 0.826241 | 3.02E-54 | -1.69E-46 |
MS.gene058660 | MS.gene96333 | 0.809988 | 1.44E-50 | -1.69E-46 |
MS.gene058723 | MS.gene96333 | 0.804389 | 2.21E-49 | -1.69E-46 |
MS.gene058928 | MS.gene96333 | 0.866403 | 2.93E-65 | -1.69E-46 |
MS.gene058948 | MS.gene96333 | 0.813633 | 2.32E-51 | -1.69E-46 |
MS.gene05913 | MS.gene96333 | 0.80088 | 1.17E-48 | -1.69E-46 |
MS.gene059366 | MS.gene96333 | 0.861453 | 1.02E-63 | -1.69E-46 |
MS.gene059455 | MS.gene96333 | 0.815398 | 9.44E-52 | -1.69E-46 |
MS.gene059597 | MS.gene96333 | 0.833129 | 6.37E-56 | -1.69E-46 |
MS.gene05959 | MS.gene96333 | 0.8127 | 3.72E-51 | -1.69E-46 |
MS.gene059674 | MS.gene96333 | 0.833729 | 4.51E-56 | -1.69E-46 |
MS.gene059676 | MS.gene96333 | 0.847882 | 8.73E-60 | -1.69E-46 |
MS.gene059688 | MS.gene96333 | 0.874946 | 4.54E-68 | -1.69E-46 |
MS.gene059692 | MS.gene96333 | 0.878347 | 3.02E-69 | -1.69E-46 |
MS.gene059695 | MS.gene96333 | 0.880123 | 7.11E-70 | -1.69E-46 |
MS.gene059711 | MS.gene96333 | 0.850058 | 2.17E-60 | -1.69E-46 |
MS.gene059807 | MS.gene96333 | 0.851334 | 9.50E-61 | -1.69E-46 |
MS.gene05986 | MS.gene96333 | 0.811931 | 5.47E-51 | -1.69E-46 |
MS.gene059894 | MS.gene96333 | 0.825505 | 4.52E-54 | -1.69E-46 |
MS.gene059960 | MS.gene96333 | 0.833931 | 4.02E-56 | -1.69E-46 |
MS.gene059974 | MS.gene96333 | 0.810315 | 1.23E-50 | -1.69E-46 |
MS.gene060403 | MS.gene96333 | 0.801724 | 7.87E-49 | -1.69E-46 |
MS.gene060496 | MS.gene96333 | 0.802677 | 5.01E-49 | -1.69E-46 |
MS.gene060804 | MS.gene96333 | 0.835447 | 1.67E-56 | -1.69E-46 |
MS.gene060818 | MS.gene96333 | 0.86112 | 1.28E-63 | -1.69E-46 |
MS.gene060835 | MS.gene96333 | 0.827489 | 1.52E-54 | -1.69E-46 |
MS.gene060837 | MS.gene96333 | 0.841522 | 4.51E-58 | -1.69E-46 |
MS.gene060981 | MS.gene96333 | 0.832001 | 1.21E-55 | -1.69E-46 |
MS.gene061041 | MS.gene96333 | 0.867086 | 1.77E-65 | -1.69E-46 |
MS.gene061049 | MS.gene96333 | 0.829826 | 4.14E-55 | -1.69E-46 |
MS.gene061051 | MS.gene96333 | -0.842959 | 1.88E-58 | -1.69E-46 |
MS.gene061154 | MS.gene96333 | 0.819137 | 1.36E-52 | -1.69E-46 |
MS.gene061200 | MS.gene96333 | 0.819492 | 1.13E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96333.t1 | MTR_4g127690 | 91.371 | 197 | 11 | 2 | 1 | 192 | 1 | 196 | 3.52e-107 | 305 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96333.t1 | AT5G57345 | 57.447 | 188 | 72 | 4 | 5 | 192 | 9 | 188 | 3.95e-47 | 153 |
Find 58 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCATACTATGGTGGTGGTT+GGG | 0.312006 | 8.4:+6800318 | MS.gene96333:CDS |
AACAATCTTCAACTCCATTA+AGG | 0.317786 | 8.4:+6798448 | MS.gene96333:CDS |
CCTGGTGCAAAGAAAGAAAA+TGG | 0.328053 | 8.4:-6800349 | None:intergenic |
ACCAATTCTACCACCAGTTT+TGG | 0.337468 | 8.4:-6798645 | None:intergenic |
GAATTGTTATTGTTGATTCT+TGG | 0.352408 | 8.4:-6798707 | None:intergenic |
CCCCAACCACCACCATAGTA+TGG | 0.355295 | 8.4:-6800319 | None:intergenic |
AAGAAGAATGAGAACAAGTT+AGG | 0.368246 | 8.4:+6798554 | MS.gene96333:CDS |
TGCAGTTGTGAGGAAATTCT+TGG | 0.380171 | 8.4:+6800444 | MS.gene96333:CDS |
CCATACTATGGTGGTGGTTG+GGG | 0.384922 | 8.4:+6800319 | MS.gene96333:CDS |
CCTCCACTAGGTGGTGGATA+CGG | 0.391006 | 8.4:+6800283 | MS.gene96333:CDS |
TGCCATACTATGGTGGTGGT+TGG | 0.397465 | 8.4:+6800317 | MS.gene96333:CDS |
TCCTGCTGCTCCTAAAAGTT+GGG | 0.413791 | 8.4:-6798377 | None:intergenic |
TACGGTGGTGTGCCATACTA+TGG | 0.417463 | 8.4:+6800307 | MS.gene96333:CDS |
GAATCAACAATAACAATTCC+AGG | 0.432239 | 8.4:+6798711 | MS.gene96333:CDS |
GATGCATCAGCTGCCAAAAC+TGG | 0.451635 | 8.4:+6798632 | MS.gene96333:CDS |
GTCCTGCTGCTCCTAAAAGT+TGG | 0.462508 | 8.4:-6798378 | None:intergenic |
GCCAAAACTGGTGGTAGAAT+TGG | 0.463723 | 8.4:+6798644 | MS.gene96333:CDS |
CCACGGGTGGCGCCTCCACT+AGG | 0.472801 | 8.4:+6800271 | MS.gene96333:CDS |
ACTATGGTGGTGGTTGGGGA+TGG | 0.480924 | 8.4:+6800323 | MS.gene96333:CDS |
CTCCACTAGGTGGTGGATAC+GGG | 0.491592 | 8.4:+6800284 | MS.gene96333:CDS |
TTGTTGATTCTTGGTGAGGA+AGG | 0.491949 | 8.4:-6798698 | None:intergenic |
GCTGCTGGTGTGTTAACGTT+TGG | 0.494174 | 8.4:+6798599 | MS.gene96333:CDS |
GCAATGATTGCAGTGGCTGC+TGG | 0.497359 | 8.4:+6798584 | MS.gene96333:CDS |
CCGAGTGTTGCAGTAGGCGT+TGG | 0.513639 | 8.4:+6800373 | MS.gene96333:CDS |
GTTGCAGTAGGCGTTGGAGG+TGG | 0.519811 | 8.4:+6800379 | MS.gene96333:CDS |
AGTGTTGCAGTAGGCGTTGG+AGG | 0.520000 | 8.4:+6800376 | MS.gene96333:CDS |
AAAGTTGGGTTAAGAAGTGT+TGG | 0.530509 | 8.4:-6798363 | None:intergenic |
GTGGCGCCTCCACTAGGTGG+TGG | 0.533635 | 8.4:+6800277 | MS.gene96333:CDS |
GCAGTTGTGAGGAAATTCTT+GGG | 0.538440 | 8.4:+6800445 | MS.gene96333:CDS |
CTAGGTGGTGGATACGGGTA+CGG | 0.541215 | 8.4:+6800289 | MS.gene96333:CDS |
GAAGTGTTGGTGAAGAGATG+AGG | 0.545411 | 8.4:-6798350 | None:intergenic |
TGTTGATTCTTGGTGAGGAA+GGG | 0.549367 | 8.4:-6798697 | None:intergenic |
CCGTGGATTTATATAGATGT+TGG | 0.558960 | 8.4:-6800254 | None:intergenic |
CCTACTGCAACACTCGGACC+TGG | 0.565214 | 8.4:-6800367 | None:intergenic |
GCGAGGAGCGGATGATCTGA+AGG | 0.565349 | 8.4:-6798675 | None:intergenic |
GTGCTGCTGCTGCAGTTGTG+AGG | 0.568041 | 8.4:+6800434 | MS.gene96333:CDS |
CCTAGTGGAGGCGCCACCCG+TGG | 0.572068 | 8.4:-6800271 | None:intergenic |
CCAGGTCCGAGTGTTGCAGT+AGG | 0.586325 | 8.4:+6800367 | MS.gene96333:CDS |
GGAGTTGAAGATTGTTGTTG+TGG | 0.590399 | 8.4:-6798441 | None:intergenic |
ATTCTTGGTGAGGAAGGGCG+AGG | 0.590888 | 8.4:-6798692 | None:intergenic |
AAAACTGGTGGTAGAATTGG+TGG | 0.598132 | 8.4:+6798647 | MS.gene96333:CDS |
GAGGAAGCTTTGCTGTGACA+AGG | 0.599879 | 8.4:-6798331 | None:intergenic |
CCAACGCCTACTGCAACACT+CGG | 0.613463 | 8.4:-6800373 | None:intergenic |
GTTATTGTTGATTCTTGGTG+AGG | 0.615397 | 8.4:-6798702 | None:intergenic |
CCAACATCTATATAAATCCA+CGG | 0.616856 | 8.4:+6800254 | MS.gene96333:CDS |
TGGTGAGGAAGGGCGAGGAG+CGG | 0.629460 | 8.4:-6798687 | None:intergenic |
CAACATCTATATAAATCCAC+GGG | 0.636919 | 8.4:+6800255 | MS.gene96333:CDS |
GGTGTGCCATACTATGGTGG+TGG | 0.643399 | 8.4:+6800313 | MS.gene96333:CDS |
CGGGTGGCGCCTCCACTAGG+TGG | 0.653412 | 8.4:+6800274 | MS.gene96333:CDS |
AAAGTTAGCAATGATTGCAG+TGG | 0.664147 | 8.4:+6798577 | MS.gene96333:CDS |
CATCTATATAAATCCACGGG+TGG | 0.671598 | 8.4:+6800258 | MS.gene96333:CDS |
GGTGGTGGATACGGGTACGG+TGG | 0.672411 | 8.4:+6800292 | MS.gene96333:CDS |
GTTGTGAGGAAATTCTTGGG+AGG | 0.683288 | 8.4:+6800448 | MS.gene96333:CDS |
TACCCGTATCCACCACCTAG+TGG | 0.684635 | 8.4:-6800286 | None:intergenic |
CAGCAGGACGAGGAAGACTG+TGG | 0.702489 | 8.4:+6798392 | MS.gene96333:CDS |
GCATCAGCTGCCAAAACTGG+TGG | 0.706688 | 8.4:+6798635 | MS.gene96333:CDS |
CCGTATCCACCACCTAGTGG+AGG | 0.722573 | 8.4:-6800283 | None:intergenic |
GGTGGTGTGCCATACTATGG+TGG | 0.778885 | 8.4:+6800310 | MS.gene96333:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAGAAACAAAAAAAAT+TGG | - | chr8.4:6799895-6799914 | None:intergenic | 10.0% |
!! | TGATTATACTATATACTTAT+AGG | + | chr8.4:6798791-6798810 | MS.gene96333:intron | 15.0% |
!! | AAGGAAAAATAAATGTTTCT+AGG | + | chr8.4:6798746-6798765 | MS.gene96333:intron | 20.0% |
!! | AATATGATCTCTAATGATAT+AGG | - | chr8.4:6800070-6800089 | None:intergenic | 20.0% |
!! | AATGAAATCTCTTTCATAAT+TGG | + | chr8.4:6800096-6800115 | MS.gene96333:intron | 20.0% |
!! | TACAATTATCAACAAATACA+AGG | - | chr8.4:6799052-6799071 | None:intergenic | 20.0% |
!!! | TAGTTGTATTTTTCTTCTTT+GGG | + | chr8.4:6799159-6799178 | MS.gene96333:intron | 20.0% |
!!! | TATTTTTATACAGACAATGT+TGG | + | chr8.4:6799909-6799928 | MS.gene96333:intron | 20.0% |
!!! | TTCATTTTTGTTAGTTGTTT+AGG | + | chr8.4:6799221-6799240 | MS.gene96333:intron | 20.0% |
!!! | TTTAGTCTTATTCTGAAAAT+AGG | + | chr8.4:6799859-6799878 | MS.gene96333:intron | 20.0% |
! | AAAAAAAAGAAAGCCTCATT+TGG | - | chr8.4:6799536-6799555 | None:intergenic | 25.0% |
! | AAATCTCTTTCATAATTGGA+AGG | + | chr8.4:6800100-6800119 | MS.gene96333:intron | 25.0% |
! | ACTAAGGAGTTTATAAATGA+TGG | - | chr8.4:6799456-6799475 | None:intergenic | 25.0% |
! | AGTTTAATTATGATACCTAC+GGG | - | chr8.4:6799012-6799031 | None:intergenic | 25.0% |
! | CAGTTTAATTATGATACCTA+CGG | - | chr8.4:6799013-6799032 | None:intergenic | 25.0% |
! | GTAGAAATATATCTGTTAGT+TGG | + | chr8.4:6799714-6799733 | MS.gene96333:intron | 25.0% |
! | TAATACTACCTAGAGAAAAT+AGG | - | chr8.4:6798860-6798879 | None:intergenic | 25.0% |
! | TCATGTTTACGATATTAGTT+GGG | + | chr8.4:6799281-6799300 | MS.gene96333:intron | 25.0% |
! | TGACAAACAGGTAAATAAAA+AGG | - | chr8.4:6799559-6799578 | None:intergenic | 25.0% |
! | TTGTACATTTGGTTATACTT+CGG | + | chr8.4:6799320-6799339 | MS.gene96333:intron | 25.0% |
!! | GTAGTTGTATTTTTCTTCTT+TGG | + | chr8.4:6799158-6799177 | MS.gene96333:intron | 25.0% |
!! | TTTTGATGTAGTTACCTTAA+TGG | - | chr8.4:6798465-6798484 | None:intergenic | 25.0% |
!!! | GAATTGTTATTGTTGATTCT+TGG | - | chr8.4:6798710-6798729 | None:intergenic | 25.0% |
!!! | TAGCGCTTTCATTTTTTTTA+GGG | + | chr8.4:6799653-6799672 | MS.gene96333:intron | 25.0% |
!!! | TTAGCGCTTTCATTTTTTTT+AGG | + | chr8.4:6799652-6799671 | MS.gene96333:intron | 25.0% |
AACAATCTTCAACTCCATTA+AGG | + | chr8.4:6798448-6798467 | MS.gene96333:CDS | 30.0% | |
AAGAAGAATGAGAACAAGTT+AGG | + | chr8.4:6798554-6798573 | MS.gene96333:CDS | 30.0% | |
AGTATGCGTTAGAAATTAAG+AGG | - | chr8.4:6799825-6799844 | None:intergenic | 30.0% | |
CAACATCTATATAAATCCAC+GGG | + | chr8.4:6800255-6800274 | MS.gene96333:CDS | 30.0% | |
CAACTAATATCGTAAACATG+AGG | - | chr8.4:6799282-6799301 | None:intergenic | 30.0% | |
CCAACATCTATATAAATCCA+CGG | + | chr8.4:6800254-6800273 | MS.gene96333:CDS | 30.0% | |
CCAACTGAGATATATACTTA+AGG | + | chr8.4:6800014-6800033 | MS.gene96333:intron | 30.0% | |
CCTTAAGTATATATCTCAGT+TGG | - | chr8.4:6800017-6800036 | None:intergenic | 30.0% | |
CGTAGGTATCATAATTAAAC+TGG | + | chr8.4:6799011-6799030 | MS.gene96333:intron | 30.0% | |
CTAACAAAAATGAAGACTTG+TGG | - | chr8.4:6799215-6799234 | None:intergenic | 30.0% | |
CTAGAGAAAATAGGTTAGAA+TGG | - | chr8.4:6798851-6798870 | None:intergenic | 30.0% | |
CTCATGTTTACGATATTAGT+TGG | + | chr8.4:6799280-6799299 | MS.gene96333:intron | 30.0% | |
GAATCAACAATAACAATTCC+AGG | + | chr8.4:6798711-6798730 | MS.gene96333:CDS | 30.0% | |
GAATTCCAAAATTTGCATCA+AGG | - | chr8.4:6798922-6798941 | None:intergenic | 30.0% | |
GGTTAAAAAGTTCGAACAAA+TGG | + | chr8.4:6799419-6799438 | MS.gene96333:intron | 30.0% | |
GTTTGAACTTGAGTATTAGA+GGG | + | chr8.4:6799256-6799275 | MS.gene96333:intron | 30.0% | |
TGTTTGAACTTGAGTATTAG+AGG | + | chr8.4:6799255-6799274 | MS.gene96333:intron | 30.0% | |
TTCCAGGTATCTAACAAAAA+AGG | + | chr8.4:6798727-6798746 | MS.gene96333:intron | 30.0% | |
! | CATTCTAACCTATTTTCTCT+AGG | + | chr8.4:6798849-6798868 | MS.gene96333:intron | 30.0% |
! | CTGTTTGTCACTTAGATATT+CGG | + | chr8.4:6799569-6799588 | MS.gene96333:intron | 30.0% |
! | GATATATTTCTACACTCCAT+TGG | - | chr8.4:6799707-6799726 | None:intergenic | 30.0% |
! | TTTGCTTTGTTATACTTGCA+TGG | + | chr8.4:6798506-6798525 | MS.gene96333:intron | 30.0% |
!! | TGAAAGCGCTAAAATTTGAA+AGG | - | chr8.4:6799644-6799663 | None:intergenic | 30.0% |
!!! | CTGCTTCTGTTTATGTTTTT+TGG | + | chr8.4:6800412-6800431 | MS.gene96333:CDS | 30.0% |
!!! | GATATTCGGTTTTTTCTTCT+AGG | + | chr8.4:6799583-6799602 | MS.gene96333:intron | 30.0% |
!!! | TTCCTTTTTTGTTAGATACC+TGG | - | chr8.4:6798732-6798751 | None:intergenic | 30.0% |
AAAGTTAGCAATGATTGCAG+TGG | + | chr8.4:6798577-6798596 | MS.gene96333:CDS | 35.0% | |
ACAACAACTATAGCGACAAA+AGG | - | chr8.4:6799080-6799099 | None:intergenic | 35.0% | |
ACAATGTTACCACACTCTAT+TGG | - | chr8.4:6799364-6799383 | None:intergenic | 35.0% | |
ACTAAAGAGGGTTGTACATT+TGG | + | chr8.4:6799309-6799328 | MS.gene96333:intron | 35.0% | |
CAATGTTACCACACTCTATT+GGG | - | chr8.4:6799363-6799382 | None:intergenic | 35.0% | |
CCGTGGATTTATATAGATGT+TGG | - | chr8.4:6800257-6800276 | None:intergenic | 35.0% | |
CGAAATTAAGAAGTCTCACT+CGG | - | chr8.4:6799493-6799512 | None:intergenic | 35.0% | |
CGAATATCTAAGTGACAAAC+AGG | - | chr8.4:6799571-6799590 | None:intergenic | 35.0% | |
GGTGAAAACAAGGAAAACTA+AGG | - | chr8.4:6799472-6799491 | None:intergenic | 35.0% | |
TCCAACAAAATGAGACAGAT+AGG | - | chr8.4:6800194-6800213 | None:intergenic | 35.0% | |
TGCAACTACAAACTATGCTT+AGG | - | chr8.4:6798944-6798963 | None:intergenic | 35.0% | |
TTCCAAAATTTGCATCAAGG+AGG | - | chr8.4:6798919-6798938 | None:intergenic | 35.0% | |
! | AAAGTTGGGTTAAGAAGTGT+TGG | - | chr8.4:6798366-6798385 | None:intergenic | 35.0% |
! | ACCTATCTGTCTCATTTTGT+TGG | + | chr8.4:6800190-6800209 | MS.gene96333:intron | 35.0% |
! | CACTTCTTAACCCAACTTTT+AGG | + | chr8.4:6798367-6798386 | MS.gene96333:CDS | 35.0% |
!! | AGTCCATTGGTTTGAACTAT+TGG | - | chr8.4:6799760-6799779 | None:intergenic | 35.0% |
!! | ATGGAGAATTTTGAGTCCAT+TGG | - | chr8.4:6799773-6799792 | None:intergenic | 35.0% |
!! | GTTATTGTTGATTCTTGGTG+AGG | - | chr8.4:6798705-6798724 | None:intergenic | 35.0% |
!!! | ACATGGAAGCAGTTTTAAGT+AGG | - | chr8.4:6799983-6800002 | None:intergenic | 35.0% |
AAAACTGGTGGTAGAATTGG+TGG | + | chr8.4:6798647-6798666 | MS.gene96333:CDS | 40.0% | |
AAAGCCTCATTTGGACTTGA+GGG | - | chr8.4:6799527-6799546 | None:intergenic | 40.0% | |
CATCTATATAAATCCACGGG+TGG | + | chr8.4:6800258-6800277 | MS.gene96333:CDS | 40.0% | |
CCTGGTGCAAAGAAAGAAAA+TGG | - | chr8.4:6800352-6800371 | None:intergenic | 40.0% | |
GCAGTTGTGAGGAAATTCTT+GGG | + | chr8.4:6800445-6800464 | MS.gene96333:CDS | 40.0% | |
GGTCCAATAGTTCAAACCAA+TGG | + | chr8.4:6799754-6799773 | MS.gene96333:intron | 40.0% | |
GTGGGAACATGGAAAAGTAA+TGG | - | chr8.4:6799792-6799811 | None:intergenic | 40.0% | |
GTGGTAACATTGTGAGTAGT+TGG | + | chr8.4:6799371-6799390 | MS.gene96333:intron | 40.0% | |
TAGTTGGCATTCTCAAGAGT+AGG | + | chr8.4:6799730-6799749 | MS.gene96333:intron | 40.0% | |
TGCAGTTGTGAGGAAATTCT+TGG | + | chr8.4:6800444-6800463 | MS.gene96333:CDS | 40.0% | |
TTTCGTATCTGTATGTCGAC+AGG | + | chr8.4:6800230-6800249 | MS.gene96333:intron | 40.0% | |
! | ACCAATTCTACCACCAGTTT+TGG | - | chr8.4:6798648-6798667 | None:intergenic | 40.0% |
! | CCATTTTCTTTCTTTGCACC+AGG | + | chr8.4:6800349-6800368 | MS.gene96333:CDS | 40.0% |
! | CGCTAAAATTTGAAAGGTGC+AGG | - | chr8.4:6799638-6799657 | None:intergenic | 40.0% |
! | CTCCTCCTTGATGCAAATTT+TGG | + | chr8.4:6798914-6798933 | MS.gene96333:intron | 40.0% |
! | GGAGTTGAAGATTGTTGTTG+TGG | - | chr8.4:6798444-6798463 | None:intergenic | 40.0% |
! | TGTACAACCCTCTTTAGTTC+AGG | - | chr8.4:6799307-6799326 | None:intergenic | 40.0% |
! | TGTTCGAACTTTTTAACCGC+TGG | - | chr8.4:6799417-6799436 | None:intergenic | 40.0% |
! | TTGGTGTTCTTAAGTGTAGC+AGG | + | chr8.4:6799390-6799409 | MS.gene96333:intron | 40.0% |
! | TTTTCTTCTAGGCTTGTGAG+AGG | + | chr8.4:6799594-6799613 | MS.gene96333:intron | 40.0% |
!! | AGTTGGTGAGATAAGAGACA+TGG | - | chr8.4:6800000-6800019 | None:intergenic | 40.0% |
!! | GTTGTTGTTTGTCTCCTTGT+CGG | + | chr8.4:6799092-6799111 | MS.gene96333:intron | 40.0% |
!! | TGTTGATTCTTGGTGAGGAA+GGG | - | chr8.4:6798700-6798719 | None:intergenic | 40.0% |
!! | TTGTTGATTCTTGGTGAGGA+AGG | - | chr8.4:6798701-6798720 | None:intergenic | 40.0% |
!! | TTTTTAGGGACCAGTGAATG+AGG | + | chr8.4:6799667-6799686 | MS.gene96333:intron | 40.0% |
AAGCCTCATTTGGACTTGAG+GGG | - | chr8.4:6799526-6799545 | None:intergenic | 45.0% | |
ACCACACTCTATTGGGTCTT+TGG | - | chr8.4:6799356-6799375 | None:intergenic | 45.0% | |
AGAGCAAGAAGACCCAGTTA+CGG | - | chr8.4:6799137-6799156 | None:intergenic | 45.0% | |
AGTTGGGCCTGAACTAAAGA+GGG | + | chr8.4:6799297-6799316 | MS.gene96333:intron | 45.0% | |
ATACCTACGGGCATCAATGT+CGG | - | chr8.4:6799000-6799019 | None:intergenic | 45.0% | |
GAAAGCCTCATTTGGACTTG+AGG | - | chr8.4:6799528-6799547 | None:intergenic | 45.0% | |
GAAGACTTCTGACCGTAACT+GGG | + | chr8.4:6799122-6799141 | MS.gene96333:intron | 45.0% | |
GCCAAAACTGGTGGTAGAAT+TGG | + | chr8.4:6798644-6798663 | MS.gene96333:CDS | 45.0% | |
GTTGTGAGGAAATTCTTGGG+AGG | + | chr8.4:6800448-6800467 | MS.gene96333:CDS | 45.0% | |
TAGTTGGGCCTGAACTAAAG+AGG | + | chr8.4:6799296-6799315 | MS.gene96333:intron | 45.0% | |
TCCAAAGACCCAATAGAGTG+TGG | + | chr8.4:6799352-6799371 | MS.gene96333:intron | 45.0% | |
TCCTGCTGCTCCTAAAAGTT+GGG | - | chr8.4:6798380-6798399 | None:intergenic | 45.0% | |
TGAAGACTTCTGACCGTAAC+TGG | + | chr8.4:6799121-6799140 | MS.gene96333:intron | 45.0% | |
TTGGCATTCTCAAGAGTAGG+AGG | + | chr8.4:6799733-6799752 | MS.gene96333:intron | 45.0% | |
! | AGTCTCACTCGGTGAAAACA+AGG | - | chr8.4:6799482-6799501 | None:intergenic | 45.0% |
!! | GAAGTGTTGGTGAAGAGATG+AGG | - | chr8.4:6798353-6798372 | None:intergenic | 45.0% |
!! | TTTCTACACTCCATTGGCTC+TGG | - | chr8.4:6799701-6799720 | None:intergenic | 45.0% |
!! | CTTAAATATTATATATAAAT+AGG | + | chr8.4:6798531-6798550 | MS.gene96333:intron | 5.0% |
AGCCTCATTTGGACTTGAGG+GGG | - | chr8.4:6799525-6799544 | None:intergenic | 50.0% | |
AGTCTTCACCAAAGCCGACA+AGG | - | chr8.4:6799109-6799128 | None:intergenic | 50.0% | |
ATTAAGAGGTCCCACACGTG+TGG | - | chr8.4:6799811-6799830 | None:intergenic | 50.0% | |
CTTAAGTGTAGCAGGTCCAG+CGG | + | chr8.4:6799398-6799417 | MS.gene96333:intron | 50.0% | |
GATGCATCAGCTGCCAAAAC+TGG | + | chr8.4:6798632-6798651 | MS.gene96333:CDS | 50.0% | |
GCTGCTGGTGTGTTAACGTT+TGG | + | chr8.4:6798599-6798618 | MS.gene96333:CDS | 50.0% | |
GGTATCAGAGCCTCATTCAC+TGG | - | chr8.4:6799680-6799699 | None:intergenic | 50.0% | |
GTCCTGCTGCTCCTAAAAGT+TGG | - | chr8.4:6798381-6798400 | None:intergenic | 50.0% | |
TACGGTGGTGTGCCATACTA+TGG | + | chr8.4:6800307-6800326 | MS.gene96333:CDS | 50.0% | |
TTAAGAGGTCCCACACGTGT+GGG | - | chr8.4:6799810-6799829 | None:intergenic | 50.0% | |
TTCCATGTTCCCACACGTGT+GGG | + | chr8.4:6799798-6799817 | MS.gene96333:intron | 50.0% | |
TTTCCATGTTCCCACACGTG+TGG | + | chr8.4:6799797-6799816 | MS.gene96333:intron | 50.0% | |
! | GAGGAAGCTTTGCTGTGACA+AGG | - | chr8.4:6798334-6798353 | None:intergenic | 50.0% |
! | TTTGCATCAAGGAGGAGCGT+TGG | - | chr8.4:6798911-6798930 | None:intergenic | 50.0% |
!! | ACCCAACTTTTAGGAGCAGC+AGG | + | chr8.4:6798376-6798395 | MS.gene96333:CDS | 50.0% |
!! | CCATACTATGGTGGTGGTTG+GGG | + | chr8.4:6800319-6800338 | MS.gene96333:CDS | 50.0% |
!! | GCCATACTATGGTGGTGGTT+GGG | + | chr8.4:6800318-6800337 | MS.gene96333:CDS | 50.0% |
!! | GTTTGTCTCCTTGTCGGCTT+TGG | + | chr8.4:6799098-6799117 | MS.gene96333:intron | 50.0% |
!! | TGCCATACTATGGTGGTGGT+TGG | + | chr8.4:6800317-6800336 | MS.gene96333:CDS | 50.0% |
ATTCTTGGTGAGGAAGGGCG+AGG | - | chr8.4:6798695-6798714 | None:intergenic | 55.0% | |
CCAACGCCTACTGCAACACT+CGG | - | chr8.4:6800376-6800395 | None:intergenic | 55.0% | |
CCCCAACCACCACCATAGTA+TGG | - | chr8.4:6800322-6800341 | None:intergenic | 55.0% | |
GCAATGATTGCAGTGGCTGC+TGG | + | chr8.4:6798584-6798603 | MS.gene96333:CDS | 55.0% | |
GCATCAGCTGCCAAAACTGG+TGG | + | chr8.4:6798635-6798654 | MS.gene96333:CDS | 55.0% | |
GCCTCATTTGGACTTGAGGG+GGG | - | chr8.4:6799524-6799543 | None:intergenic | 55.0% | |
GGTGGTGTGCCATACTATGG+TGG | + | chr8.4:6800310-6800329 | MS.gene96333:CDS | 55.0% | |
GGTGTGCCATACTATGGTGG+TGG | + | chr8.4:6800313-6800332 | MS.gene96333:CDS | 55.0% | |
TACCCGTATCCACCACCTAG+TGG | - | chr8.4:6800289-6800308 | None:intergenic | 55.0% | |
TCCCCCCTCAAGTCCAAATG+AGG | + | chr8.4:6799520-6799539 | MS.gene96333:intron | 55.0% | |
! | GGCTCTGATACCAGAGCCAA+TGG | + | chr8.4:6799688-6799707 | MS.gene96333:intron | 55.0% |
!! | ACTATGGTGGTGGTTGGGGA+TGG | + | chr8.4:6800323-6800342 | MS.gene96333:CDS | 55.0% |
!! | AGTGTTGCAGTAGGCGTTGG+AGG | + | chr8.4:6800376-6800395 | MS.gene96333:CDS | 55.0% |
!! | CCTCCACTAGGTGGTGGATA+CGG | + | chr8.4:6800283-6800302 | MS.gene96333:CDS | 55.0% |
!! | CTAGGTGGTGGATACGGGTA+CGG | + | chr8.4:6800289-6800308 | MS.gene96333:CDS | 55.0% |
!! | CTCCACTAGGTGGTGGATAC+GGG | + | chr8.4:6800284-6800303 | MS.gene96333:CDS | 55.0% |
!! | CTTTTAGGAGCAGCAGGACG+AGG | + | chr8.4:6798382-6798401 | MS.gene96333:CDS | 55.0% |
CAGCAGGACGAGGAAGACTG+TGG | + | chr8.4:6798392-6798411 | MS.gene96333:CDS | 60.0% | |
CCGTATCCACCACCTAGTGG+AGG | - | chr8.4:6800286-6800305 | None:intergenic | 60.0% | |
CCTACGGGCATCAATGTCGG+AGG | - | chr8.4:6798997-6799016 | None:intergenic | 60.0% | |
CCTACTGCAACACTCGGACC+TGG | - | chr8.4:6800370-6800389 | None:intergenic | 60.0% | |
CCTCCGACATTGATGCCCGT+AGG | + | chr8.4:6798994-6799013 | MS.gene96333:intron | 60.0% | |
CTAGGCTTGTGAGAGGTCCC+TGG | + | chr8.4:6799601-6799620 | MS.gene96333:intron | 60.0% | |
GCGAGGAGCGGATGATCTGA+AGG | - | chr8.4:6798678-6798697 | None:intergenic | 60.0% | |
GTCCCACACGTGTGGGAACA+TGG | - | chr8.4:6799803-6799822 | None:intergenic | 60.0% | |
! | CCAGGTCCGAGTGTTGCAGT+AGG | + | chr8.4:6800367-6800386 | MS.gene96333:CDS | 60.0% |
! | CCGAGTGTTGCAGTAGGCGT+TGG | + | chr8.4:6800373-6800392 | MS.gene96333:CDS | 60.0% |
! | GAAAGGTGCAGGTAGCCGCA+CGG | - | chr8.4:6799627-6799646 | None:intergenic | 60.0% |
! | GTGCTGCTGCTGCAGTTGTG+AGG | + | chr8.4:6800434-6800453 | MS.gene96333:CDS | 60.0% |
!! | GTTGCAGTAGGCGTTGGAGG+TGG | + | chr8.4:6800379-6800398 | MS.gene96333:CDS | 60.0% |
TGGTGAGGAAGGGCGAGGAG+CGG | - | chr8.4:6798690-6798709 | None:intergenic | 65.0% | |
!! | GGTGGTGGATACGGGTACGG+TGG | + | chr8.4:6800292-6800311 | MS.gene96333:CDS | 65.0% |
GTGAGAGGTCCCTGGCCGTG+CGG | + | chr8.4:6799609-6799628 | MS.gene96333:intron | 70.0% | |
GTGGCGCCTCCACTAGGTGG+TGG | + | chr8.4:6800277-6800296 | MS.gene96333:CDS | 70.0% | |
TGCAGGTAGCCGCACGGCCA+GGG | - | chr8.4:6799621-6799640 | None:intergenic | 70.0% | |
CCACGGGTGGCGCCTCCACT+AGG | + | chr8.4:6800271-6800290 | MS.gene96333:CDS | 75.0% | |
CGGGTGGCGCCTCCACTAGG+TGG | + | chr8.4:6800274-6800293 | MS.gene96333:CDS | 75.0% | |
GTGCAGGTAGCCGCACGGCC+AGG | - | chr8.4:6799622-6799641 | None:intergenic | 75.0% | |
!! | CCTAGTGGAGGCGCCACCCG+TGG | - | chr8.4:6800274-6800293 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 6798324 | 6800504 | 6798324 | ID=MS.gene96333 |
chr8.4 | mRNA | 6798324 | 6800504 | 6798324 | ID=MS.gene96333.t1;Parent=MS.gene96333 |
chr8.4 | exon | 6798324 | 6798469 | 6798324 | ID=MS.gene96333.t1.exon1;Parent=MS.gene96333.t1 |
chr8.4 | CDS | 6798324 | 6798469 | 6798324 | ID=cds.MS.gene96333.t1;Parent=MS.gene96333.t1 |
chr8.4 | exon | 6798553 | 6798732 | 6798553 | ID=MS.gene96333.t1.exon2;Parent=MS.gene96333.t1 |
chr8.4 | CDS | 6798553 | 6798732 | 6798553 | ID=cds.MS.gene96333.t1;Parent=MS.gene96333.t1 |
chr8.4 | exon | 6800252 | 6800504 | 6800252 | ID=MS.gene96333.t1.exon3;Parent=MS.gene96333.t1 |
chr8.4 | CDS | 6800252 | 6800504 | 6800252 | ID=cds.MS.gene96333.t1;Parent=MS.gene96333.t1 |
Gene Sequence |
Protein sequence |