AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010281.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010281.01.T01 MTR_2g081090 91.440 257 0 2 1 237 1 255 1.00e-166 461
MsG0280010281.01.T01 MTR_2g081090 100.000 194 0 0 44 237 35 228 3.34e-142 398
MsG0280010281.01.T01 MTR_5g097280 63.566 258 61 6 10 237 2 256 1.11e-105 306
MsG0280010281.01.T01 MTR_6g012080 79.167 192 38 2 45 236 66 255 2.36e-103 301
MsG0280010281.01.T01 MTR_4g094605 78.866 194 37 4 45 237 67 257 6.59e-103 300
MsG0280010281.01.T01 MTR_6g012110 77.720 193 41 2 44 236 65 255 7.29e-102 297
MsG0280010281.01.T01 MTR_6g011890 77.604 192 41 2 45 236 66 255 1.50e-101 296
MsG0280010281.01.T01 MTR_6g011880 77.604 192 41 2 45 236 66 255 1.97e-101 296
MsG0280010281.01.T01 MTR_6g011870 77.202 193 42 2 44 236 65 255 2.08e-101 296
MsG0280010281.01.T01 MTR_6g043600 68.293 205 41 4 41 244 46 227 2.41e-88 261
MsG0280010281.01.T01 MTR_6g060175 52.105 190 85 3 45 234 91 274 1.52e-53 175
MsG0280010281.01.T01 MTR_1g026550 42.373 236 120 3 7 234 95 322 3.51e-53 175
MsG0280010281.01.T01 MTR_6g060175 50.000 190 79 4 45 234 91 264 8.11e-47 157
MsG0280010281.01.T01 MTR_5g098785 41.038 212 92 8 46 234 68 269 4.50e-36 129
MsG0280010281.01.T01 MTR_5g098780 41.038 212 92 9 46 234 66 267 2.90e-35 127
MsG0280010281.01.T01 MTR_8g023790 36.818 220 103 9 26 230 58 256 1.61e-33 122
MsG0280010281.01.T01 MTR_3g101670 37.624 202 94 5 45 230 68 253 3.45e-32 119
MsG0280010281.01.T01 MTR_6g033320 39.048 210 101 9 37 234 39 233 1.20e-31 117
MsG0280010281.01.T01 MTR_2g042720 36.893 206 88 6 45 230 72 255 2.69e-30 114
MsG0280010281.01.T01 MTR_4g015570 35.498 231 91 7 44 231 63 278 2.05e-28 109
MsG0280010281.01.T01 MTR_3g435460 37.255 204 92 7 44 233 62 243 1.09e-27 107
MsG0280010281.01.T01 MTR_3g435460 36.410 195 88 7 53 233 10 182 6.80e-24 95.5
MsG0280010281.01.T01 MTR_1g026550 37.063 143 80 2 8 148 96 230 3.49e-22 92.0
MsG0280010281.01.T01 MTR_3g070340 41.611 149 72 5 72 220 137 270 4.58e-22 92.4
MsG0280010281.01.T01 MTR_2g008610 34.615 208 86 7 45 223 73 259 2.94e-21 90.1
MsG0280010281.01.T01 MTR_5g098770 51.389 72 35 0 163 234 15 86 6.20e-20 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010281.01.T01 AT5G54270 81.323 257 26 3 4 238 1 257 3.35e-149 417
MsG0280010281.01.T01 AT2G05070 63.035 257 62 6 10 236 2 255 1.77e-104 304
MsG0280010281.01.T01 AT2G05100 63.813 257 60 6 10 236 2 255 1.87e-104 304
MsG0280010281.01.T01 AT3G27690 78.462 195 38 4 44 237 66 257 4.64e-104 303
MsG0280010281.01.T01 AT3G27690 78.462 195 38 4 44 237 98 289 8.13e-104 303
MsG0280010281.01.T01 AT1G29930 75.000 196 46 3 44 238 66 259 3.13e-101 296
MsG0280010281.01.T01 AT1G29920 75.000 196 46 3 44 238 66 259 3.73e-101 295
MsG0280010281.01.T01 AT1G29910 75.000 196 46 3 44 238 66 259 3.73e-101 295
MsG0280010281.01.T01 AT2G34420 75.897 195 44 3 45 238 65 257 4.89e-101 295
MsG0280010281.01.T01 AT2G34430 75.897 195 44 3 45 238 66 258 5.23e-101 295
MsG0280010281.01.T01 AT2G05100 59.375 256 67 7 10 231 2 254 3.58e-89 267
MsG0280010281.01.T01 AT1G76570 47.030 202 99 2 45 238 123 324 1.05e-53 176
MsG0280010281.01.T01 AT4G10340 51.053 190 87 3 45 234 82 265 8.87e-50 165
MsG0280010281.01.T01 AT1G61520 39.526 253 113 10 5 234 30 265 6.99e-39 136
MsG0280010281.01.T01 AT1G61520 39.526 253 113 10 5 234 30 265 6.99e-39 136
MsG0280010281.01.T01 AT1G61520 42.029 207 87 9 51 234 14 210 1.97e-35 126
MsG0280010281.01.T01 AT3G61470 38.117 223 102 10 23 230 44 245 2.13e-35 127
MsG0280010281.01.T01 AT1G45474 40.206 194 101 4 45 230 56 242 2.07e-33 122
MsG0280010281.01.T01 AT1G45474 40.206 194 101 4 45 230 56 242 2.07e-33 122
MsG0280010281.01.T01 AT3G54890 40.206 194 96 8 45 234 55 232 1.23e-30 114
MsG0280010281.01.T01 AT3G08940 33.463 257 111 8 20 231 35 276 3.11e-30 114
MsG0280010281.01.T01 AT1G19150 36.019 211 91 7 45 234 75 262 3.54e-28 108
MsG0280010281.01.T01 AT3G47470 37.255 204 92 6 44 233 63 244 8.81e-28 107
MsG0280010281.01.T01 AT5G01530 34.483 232 94 7 43 231 63 279 1.32e-27 107
MsG0280010281.01.T01 AT1G15820 34.762 210 87 7 43 223 68 256 1.34e-21 90.9
MsG0280010281.01.T01 AT2G40100 41.447 152 73 5 72 223 136 271 1.17e-20 88.6
MsG0280010281.01.T01 AT3G54890 37.975 158 79 7 45 199 55 196 9.28e-20 85.1
MsG0280010281.01.T01 AT5G28450 48.718 78 36 2 154 230 87 161 7.03e-15 70.9

Find 103 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAAGGGTCTTATAATT+AGG 0.094645 2:+67183105 None:intergenic
GAAGGTGGTCTTGACTATTT+AGG 0.130970 2:-67183738 MsG0280010281.01.T01:CDS
ATTATGATCTTAATGATTAT+TGG 0.165795 2:-67183292 MsG0280010281.01.T01:three_prime_UTR
CTGTTCTTGGCAAATGCTTC+TGG 0.168930 2:+67184062 None:intergenic
TGGCATAACCCAGGCATTAT+TGG 0.258917 2:+67183401 None:intergenic
AGGACCTTTGGAGAATCTTT+TGG 0.271440 2:-67183445 MsG0280010281.01.T01:CDS
CTCAAAGGGTCTTATAATTA+GGG 0.280275 2:+67183106 None:intergenic
GGAGAATTCCCTGGTGATTA+TGG 0.284769 2:-67184113 MsG0280010281.01.T01:CDS
TTGGATTAGTATATCTGTTT+TGG 0.296114 2:-67183273 MsG0280010281.01.T01:three_prime_UTR
TATTTATATGACTTCCTTGT+TGG 0.307231 2:+67183180 None:intergenic
AGGTTTCCAAGTTGTTCTAA+TGG 0.320920 2:-67183673 MsG0280010281.01.T01:CDS
AACCTCAAGAGCCCTGTTCT+TGG 0.335763 2:+67184049 None:intergenic
AAGGTGGTCTTGACTATTTA+GGG 0.341687 2:-67183737 MsG0280010281.01.T01:CDS
TTAAGCTCAGCGAAAGTAAC+TGG 0.345168 2:+67183546 None:intergenic
CTTTGTGCATGAACAAGGTT+TGG 0.349100 2:+67183711 None:intergenic
TTCCGCATCAACGGTCTTCC+TGG 0.355033 2:-67183636 MsG0280010281.01.T01:CDS
GGTTTCCAAGTTGTTCTAAT+GGG 0.357946 2:-67183672 MsG0280010281.01.T01:CDS
ACCCAGGCATTATTGGCAAC+AGG 0.364495 2:+67183408 None:intergenic
CAGAAGCATTTGCCAAGAAC+AGG 0.372548 2:-67184061 MsG0280010281.01.T01:CDS
TGTCACTGGTAAAGGACCTT+TGG 0.380892 2:-67183457 MsG0280010281.01.T01:CDS
TTGATTTCAAAGAACCAGTT+TGG 0.381372 2:-67183788 MsG0280010281.01.T01:CDS
CAGACTCCTTCATACTTAAC+TGG 0.384985 2:-67184134 MsG0280010281.01.T01:CDS
GGCCAATACTTTGACCCTCT+TGG 0.405341 2:-67183582 MsG0280010281.01.T01:CDS
CAAAGCATCTTAGCAGTACT+AGG 0.430115 2:-67183693 MsG0280010281.01.T01:CDS
CAAGCTATTGTCACTGGTAA+AGG 0.430252 2:-67183465 MsG0280010281.01.T01:CDS
GATCCTGCTTTGAACCAAAC+TGG 0.431531 2:+67183774 None:intergenic
TGACTTCCTTGTTGGTTGGT+TGG 0.435541 2:+67183188 None:intergenic
GGAAATCAAGAATGGAAGAT+TGG 0.436306 2:-67183517 MsG0280010281.01.T01:CDS
TATGCCACCAAGTTTGTGCC+TGG 0.443893 2:-67183385 MsG0280010281.01.T01:CDS
GTTAAACAAACTCCTTTCCT+TGG 0.446741 2:-67184853 MsG0280010281.01.T01:CDS
TCAGTTATTTGAGTGAACTA+AGG 0.450678 2:-67184961 MsG0280010281.01.T01:five_prime_UTR
AAAAGAAGCACTTGAAAACT+TGG 0.458356 2:-67184925 MsG0280010281.01.T01:five_prime_UTR
ACCCTGTTGCCAATAATGCC+TGG 0.466859 2:-67183410 MsG0280010281.01.T01:CDS
TTTGTTCAAGCTATTGTCAC+TGG 0.469594 2:-67183471 MsG0280010281.01.T01:CDS
GTTCTAATGGGTCTTGTCGA+AGG 0.474424 2:-67183660 MsG0280010281.01.T01:CDS
TGAAGGTGATCCATGGAAGA+TGG 0.483847 2:-67183869 MsG0280010281.01.T01:intron
GGGTCAAAGTATTGGCCACC+AGG 0.488607 2:+67183588 None:intergenic
GACCAAGAGGGTCAAAGTAT+TGG 0.490473 2:+67183580 None:intergenic
TCCTTTCCTTGGTCAAAGGA+AGG 0.490595 2:-67184842 MsG0280010281.01.T01:CDS
TATATGACTTCCTTGTTGGT+TGG 0.496487 2:+67183184 None:intergenic
AGTATTGGCCACCAGGGTAA+AGG 0.501836 2:+67183595 None:intergenic
TTCTAATGGGTCTTGTCGAA+GGG 0.505605 2:-67183659 MsG0280010281.01.T01:CDS
CCCTGTTGCCAATAATGCCT+GGG 0.507494 2:-67183409 MsG0280010281.01.T01:CDS
TTTGTGCATGAACAAGGTTT+GGG 0.509110 2:+67183712 None:intergenic
CAAGACCCATTAGAACAACT+TGG 0.511234 2:+67183667 None:intergenic
AAACTCCTTTCCTTGGTCAA+AGG 0.511273 2:-67184846 MsG0280010281.01.T01:CDS
CAGCACCCTTCCTTTGACCA+AGG 0.515079 2:+67184836 None:intergenic
TGCCAAGAACAGGGCTCTTG+AGG 0.515098 2:-67184051 MsG0280010281.01.T01:intron
TTTCGCTGAGCTTAAAGTGA+AGG 0.516818 2:-67183538 MsG0280010281.01.T01:CDS
TTAAGAACCAGGCACAAACT+TGG 0.519988 2:+67183378 None:intergenic
CTAGCATAGCCCATCTTCCA+TGG 0.521302 2:+67183859 None:intergenic
GTCGAAGGGTTCCGCATCAA+CGG 0.526007 2:-67183645 MsG0280010281.01.T01:CDS
TATCTATGATTGCCTTTGTG+TGG 0.526299 2:-67183345 MsG0280010281.01.T01:exon
AATTCCCTGGTGATTATGGA+TGG 0.526464 2:-67184109 MsG0280010281.01.T01:CDS
GAACCAGTTTGGTTCAAAGC+AGG 0.531298 2:-67183777 MsG0280010281.01.T01:CDS
CTTAGAGATGTTGTCGCCAT+GGG 0.532010 2:-67184805 MsG0280010281.01.T01:CDS
TACTTAACTGGAGAATTCCC+TGG 0.533200 2:-67184122 MsG0280010281.01.T01:CDS
ATGGCGACAACATCTCTAAG+AGG 0.535432 2:+67184808 None:intergenic
TTGTTGCCCTCTCCGACACC+AGG 0.535866 2:+67183618 None:intergenic
GATTATGGATGGGACACTGC+TGG 0.539551 2:-67184098 MsG0280010281.01.T01:CDS
AAAGTGAAGGAAATCAAGAA+TGG 0.545234 2:-67183525 MsG0280010281.01.T01:CDS
GGTCTTCCTGGTGTCGGAGA+GGG 0.548663 2:-67183624 MsG0280010281.01.T01:CDS
AGATGCTTTGTGCATGAACA+AGG 0.550454 2:+67183706 None:intergenic
TCTTAGAGATGTTGTCGCCA+TGG 0.551003 2:-67184806 MsG0280010281.01.T01:CDS
GAAGGTGATCCATGGAAGAT+GGG 0.554053 2:-67183868 MsG0280010281.01.T01:intron
CATGGAAGATGGGCTATGCT+AGG 0.554415 2:-67183858 MsG0280010281.01.T01:CDS
AACATTGATGTTTAAGAACC+AGG 0.556979 2:+67183367 None:intergenic
AATTCTCCAGTTAAGTATGA+AGG 0.558241 2:+67184128 None:intergenic
GTGTCCCATCCATAATCACC+AGG 0.560079 2:+67184104 None:intergenic
CCTTTCCTTGGTCAAAGGAA+GGG 0.568157 2:-67184841 MsG0280010281.01.T01:CDS
TGGGCTATGCTAGGAGCACT+CGG 0.571623 2:-67183849 MsG0280010281.01.T01:CDS
GACAACATCTCTAAGAGGGT+TGG 0.572370 2:+67184813 None:intergenic
CGGTCTTCCTGGTGTCGGAG+AGG 0.575168 2:-67183625 MsG0280010281.01.T01:CDS
AAATACCATGGTGAATCTTG+AGG 0.576071 2:+67184780 None:intergenic
TTGAATTTGAAGGTGATCCA+TGG 0.576545 2:-67183876 MsG0280010281.01.T01:intron
ATAACTGATACTAGAATGTG+TGG 0.578160 2:+67184976 None:intergenic
ATCAACGGTCTTCCTGGTGT+CGG 0.580505 2:-67183630 MsG0280010281.01.T01:CDS
AGCGAAAGTAACTGGATCGT+CGG 0.584697 2:+67183554 None:intergenic
CCCAGGCATTATTGGCAACA+GGG 0.587322 2:+67183409 None:intergenic
GGTGAATCTTGAGGTTCCCA+TGG 0.597497 2:+67184789 None:intergenic
TGTAGCAGCCATCAATGCCA+TGG 0.603074 2:+67184894 None:intergenic
AGAACCAGGCACAAACTTGG+TGG 0.606113 2:+67183381 None:intergenic
AGGTAGTAGTATTTATGCAA+TGG 0.609567 2:+67183133 None:intergenic
CCCTTCCTTTGACCAAGGAA+AGG 0.609595 2:+67184841 None:intergenic
GGATCGCAAATCTTCTCAGA+AGG 0.611974 2:-67183756 MsG0280010281.01.T01:CDS
CACCAGGAAGACCGTTGATG+CGG 0.612040 2:+67183634 None:intergenic
TCGCAAATCTTCTCAGAAGG+TGG 0.619983 2:-67183753 MsG0280010281.01.T01:CDS
ATTCCCTGGTGATTATGGAT+GGG 0.621810 2:-67184108 MsG0280010281.01.T01:CDS
AGAAGCATTTGCCAAGAACA+GGG 0.625251 2:-67184060 MsG0280010281.01.T01:CDS
TGGCGACAACATCTCTAAGA+GGG 0.635101 2:+67184809 None:intergenic
TTTAAACCAACCAACCAACA+AGG 0.640572 2:-67183194 MsG0280010281.01.T01:three_prime_UTR
GGATCGTCGGCTAGACCAAG+AGG 0.652317 2:+67183567 None:intergenic
GGTCAAAGTATTGGCCACCA+GGG 0.653321 2:+67183589 None:intergenic
TGATCCAAAAGATTCTCCAA+AGG 0.654984 2:+67183441 None:intergenic
CAAACTTGGTGGCATAACCC+AGG 0.663856 2:+67183392 None:intergenic
GGTCTTATAATTAGGGACTG+AGG 0.666737 2:+67183113 None:intergenic
TCTAATCATCATCCACACAA+AGG 0.671776 2:+67183333 None:intergenic
GAGGGCAACAACCTTTACCC+TGG 0.674842 2:-67183606 MsG0280010281.01.T01:CDS
GATCGTCGGCTAGACCAAGA+GGG 0.686043 2:+67183568 None:intergenic
GGCAACAACCTTTACCCTGG+TGG 0.691666 2:-67183603 MsG0280010281.01.T01:CDS
GTGTGGATGATGATTAGACA+TGG 0.706158 2:-67183328 MsG0280010281.01.T01:three_prime_UTR
GGGAACCTCAAGATTCACCA+TGG 0.716738 2:-67184785 MsG0280010281.01.T01:intron
TGTCCCATCCATAATCACCA+GGG 0.728458 2:+67184105 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATACTAAAAGAAAA+AGG + Chr2:67183336-67183355 None:intergenic 10.0%
!! AATTTATACTAAAAGAAAAA+GGG + Chr2:67183335-67183354 None:intergenic 10.0%
!! ACATAACTTAATATCTTTAT+CGG + Chr2:67184188-67184207 None:intergenic 15.0%
!! ATTATGATCTTAATGATTAT+TGG - Chr2:67184791-67184810 MsG0280010281.01.T01:CDS 15.0%
!! ATTTAGAAAAAACATAAGAA+TGG + Chr2:67184106-67184125 None:intergenic 15.0%
!! TTAAGTTATGTTGAATTTGA+AGG - Chr2:67184197-67184216 MsG0280010281.01.T01:intron 20.0%
!!! ACGTTTAGATATGTTTTTAT+TGG - Chr2:67183762-67183781 MsG0280010281.01.T01:CDS 20.0%
!!! ACTAATGTTCATTTTAAAGA+TGG - Chr2:67184842-67184861 MsG0280010281.01.T01:CDS 20.0%
!!! CAAGTATGTTTTTTTATCAT+TGG - Chr2:67183515-67183534 MsG0280010281.01.T01:CDS 20.0%
!!! TAGAACGTTAACAAAATTTT+TGG + Chr2:67184138-67184157 None:intergenic 20.0%
! CACTATGCTAACATATTTAT+AGG - Chr2:67183356-67183375 MsG0280010281.01.T01:exon 25.0%
! CTAACAAAGTATATGCTTTA+TGG + Chr2:67183646-67183665 None:intergenic 25.0%
! TAAAAAAACATACTTGTGCA+TGG + Chr2:67183511-67183530 None:intergenic 25.0%
! TATTTATATGACTTCCTTGT+TGG + Chr2:67184906-67184925 None:intergenic 25.0%
!!! TATATCTGTTTTGGTTCTTA+AGG - Chr2:67184819-67184838 MsG0280010281.01.T01:CDS 25.0%
!!! TTGGATTAGTATATCTGTTT+TGG - Chr2:67184810-67184829 MsG0280010281.01.T01:CDS 25.0%
!!! TTTATATAGTGTTGCTTATG+TGG - Chr2:67183838-67183857 MsG0280010281.01.T01:CDS 25.0%
AAAACTTGGAACAAAAACCA+TGG - Chr2:67183172-67183191 MsG0280010281.01.T01:three_prime_UTR 30.0%
AAAGGGAAAAAGAAATACCA+TGG + Chr2:67183318-67183337 None:intergenic 30.0%
AAAGTGAAGGAAATCAAGAA+TGG - Chr2:67184558-67184577 MsG0280010281.01.T01:intron 30.0%
AACATTGATGTTTAAGAACC+AGG + Chr2:67184719-67184738 None:intergenic 30.0%
AATGGAATGAGAAAAAACCA+TGG + Chr2:67184088-67184107 None:intergenic 30.0%
AATTCTCCAGTTAAGTATGA+AGG + Chr2:67183958-67183977 None:intergenic 30.0%
AGGTAGTAGTATTTATGCAA+TGG + Chr2:67184953-67184972 None:intergenic 30.0%
ATGCTTTATGGCCAATTATA+TGG + Chr2:67183634-67183653 None:intergenic 30.0%
ATTGTGTTTGTGATTGTGAA+GGG - Chr2:67183872-67183891 MsG0280010281.01.T01:intron 30.0%
TAACTAATGATAGACACGTT+CGG - Chr2:67183718-67183737 MsG0280010281.01.T01:CDS 30.0%
TCAGTTATTTGAGTGAACTA+AGG - Chr2:67183122-67183141 MsG0280010281.01.T01:three_prime_UTR 30.0%
TTAAAAATGCTCCAAAACCA+TGG - Chr2:67184068-67184087 MsG0280010281.01.T01:CDS 30.0%
TTGATTTCAAAGAACCAGTT+TGG - Chr2:67184295-67184314 MsG0280010281.01.T01:intron 30.0%
TTTGTTTCGCACCATATAAT+TGG - Chr2:67183620-67183639 MsG0280010281.01.T01:CDS 30.0%
! ACCTGAAGTACTTGAAAAAT+GGG - Chr2:67184266-67184285 MsG0280010281.01.T01:intron 30.0%
! ATGAGAAAAAACCATGGTTT+TGG + Chr2:67184082-67184101 None:intergenic 30.0%
!! AAAAGAAGCACTTGAAAACT+TGG - Chr2:67183158-67183177 MsG0280010281.01.T01:three_prime_UTR 30.0%
AAATACCATGGTGAATCTTG+AGG + Chr2:67183306-67183325 None:intergenic 35.0%
AACTAATGATAGACACGTTC+GGG - Chr2:67183719-67183738 MsG0280010281.01.T01:CDS 35.0%
ACCAGACAGAGTGAAATATT+TGG - Chr2:67183912-67183931 MsG0280010281.01.T01:intron 35.0%
AGGTTTCCAAGTTGTTCTAA+TGG - Chr2:67184410-67184429 MsG0280010281.01.T01:intron 35.0%
ATTAGTAGCATCACACGTTA+AGG + Chr2:67183401-67183420 None:intergenic 35.0%
ATTGTGAAGGGAAATGAATG+TGG - Chr2:67183884-67183903 MsG0280010281.01.T01:intron 35.0%
CAGACAGAGTGAAATATTTG+GGG - Chr2:67183914-67183933 MsG0280010281.01.T01:intron 35.0%
CATTGTGTTTGTGATTGTGA+AGG - Chr2:67183871-67183890 MsG0280010281.01.T01:intron 35.0%
CCAGACAGAGTGAAATATTT+GGG - Chr2:67183913-67183932 MsG0280010281.01.T01:intron 35.0%
GGAAATCAAGAATGGAAGAT+TGG - Chr2:67184566-67184585 MsG0280010281.01.T01:intron 35.0%
GGTTTCCAAGTTGTTCTAAT+GGG - Chr2:67184411-67184430 MsG0280010281.01.T01:intron 35.0%
GTTAAACAAACTCCTTTCCT+TGG - Chr2:67183230-67183249 MsG0280010281.01.T01:three_prime_UTR 35.0%
TAACGTGTGATGCTACTAAT+TGG - Chr2:67183401-67183420 MsG0280010281.01.T01:CDS 35.0%
TATATGACTTCCTTGTTGGT+TGG + Chr2:67184902-67184921 None:intergenic 35.0%
TATCTATGATTGCCTTTGTG+TGG - Chr2:67184738-67184757 MsG0280010281.01.T01:intron 35.0%
TCTAATCATCATCCACACAA+AGG + Chr2:67184753-67184772 None:intergenic 35.0%
TGATCCAAAAGATTCTCCAA+AGG + Chr2:67184645-67184664 None:intergenic 35.0%
TTGAATTTGAAGGTGATCCA+TGG - Chr2:67184207-67184226 MsG0280010281.01.T01:intron 35.0%
TTTAAACCAACCAACCAACA+AGG - Chr2:67184889-67184908 MsG0280010281.01.T01:CDS 35.0%
TTTGTGCATGAACAAGGTTT+GGG + Chr2:67184374-67184393 None:intergenic 35.0%
TTTGTTCAAGCTATTGTCAC+TGG - Chr2:67184612-67184631 MsG0280010281.01.T01:intron 35.0%
! AACAAAAACCATGGCATTGA+TGG - Chr2:67183181-67183200 MsG0280010281.01.T01:three_prime_UTR 35.0%
! AAGGTGGTCTTGACTATTTA+GGG - Chr2:67184346-67184365 MsG0280010281.01.T01:intron 35.0%
! CACCTGAAGTACTTGAAAAA+TGG - Chr2:67184265-67184284 MsG0280010281.01.T01:intron 35.0%
! TTGGCTATGTTTTCGATGTT+TGG - Chr2:67184585-67184604 MsG0280010281.01.T01:intron 35.0%
!!! ACCCATTTTTCAAGTACTTC+AGG + Chr2:67184270-67184289 None:intergenic 35.0%
AAACTCCTTTCCTTGGTCAA+AGG - Chr2:67183237-67183256 MsG0280010281.01.T01:three_prime_UTR 40.0%
AATTCCCTGGTGATTATGGA+TGG - Chr2:67183974-67183993 MsG0280010281.01.T01:intron 40.0%
AGATGCTTTGTGCATGAACA+AGG + Chr2:67184380-67184399 None:intergenic 40.0%
ATTCCCTGGTGATTATGGAT+GGG - Chr2:67183975-67183994 MsG0280010281.01.T01:intron 40.0%
CAAGACCCATTAGAACAACT+TGG + Chr2:67184419-67184438 None:intergenic 40.0%
CAAGCTATTGTCACTGGTAA+AGG - Chr2:67184618-67184637 MsG0280010281.01.T01:intron 40.0%
CAGACTCCTTCATACTTAAC+TGG - Chr2:67183949-67183968 MsG0280010281.01.T01:intron 40.0%
CCCAAATATTTCACTCTGTC+TGG + Chr2:67183916-67183935 None:intergenic 40.0%
CTTTGTGCATGAACAAGGTT+TGG + Chr2:67184375-67184394 None:intergenic 40.0%
GAAGGGAAATGAATGTGGTA+TGG - Chr2:67183889-67183908 MsG0280010281.01.T01:intron 40.0%
GTGTGGATGATGATTAGACA+TGG - Chr2:67184755-67184774 MsG0280010281.01.T01:intron 40.0%
TACTTAACTGGAGAATTCCC+TGG - Chr2:67183961-67183980 MsG0280010281.01.T01:intron 40.0%
TTAAGAACCAGGCACAAACT+TGG + Chr2:67184708-67184727 None:intergenic 40.0%
TTAAGCTCAGCGAAAGTAAC+TGG + Chr2:67184540-67184559 None:intergenic 40.0%
TTTCGCTGAGCTTAAAGTGA+AGG - Chr2:67184545-67184564 MsG0280010281.01.T01:intron 40.0%
! CAAAGCATCTTAGCAGTACT+AGG - Chr2:67184390-67184409 MsG0280010281.01.T01:intron 40.0%
! GAAGGTGGTCTTGACTATTT+AGG - Chr2:67184345-67184364 MsG0280010281.01.T01:intron 40.0%
! GGTCTTATAATTAGGGACTG+AGG + Chr2:67184973-67184992 None:intergenic 40.0%
! TTCTAATGGGTCTTGTCGAA+GGG - Chr2:67184424-67184443 MsG0280010281.01.T01:intron 40.0%
!! AGAAGCATTTGCCAAGAACA+GGG - Chr2:67184023-67184042 MsG0280010281.01.T01:intron 40.0%
!! AGGACCTTTGGAGAATCTTT+TGG - Chr2:67184638-67184657 MsG0280010281.01.T01:intron 40.0%
AGCGAAAGTAACTGGATCGT+CGG + Chr2:67184532-67184551 None:intergenic 45.0%
ATGGCGACAACATCTCTAAG+AGG + Chr2:67183278-67183297 None:intergenic 45.0%
CCTTTCCTTGGTCAAAGGAA+GGG - Chr2:67183242-67183261 MsG0280010281.01.T01:three_prime_UTR 45.0%
CTGTTCTTGGCAAATGCTTC+TGG + Chr2:67184024-67184043 None:intergenic 45.0%
CTTAGAGATGTTGTCGCCAT+GGG - Chr2:67183278-67183297 MsG0280010281.01.T01:three_prime_UTR 45.0%
GAAGGAGTCTGAGCTGAAAA+TGG + Chr2:67183940-67183959 None:intergenic 45.0%
GAAGGTGATCCATGGAAGAT+GGG - Chr2:67184215-67184234 MsG0280010281.01.T01:intron 45.0%
GACCAAGAGGGTCAAAGTAT+TGG + Chr2:67184506-67184525 None:intergenic 45.0%
GGAGAATTCCCTGGTGATTA+TGG - Chr2:67183970-67183989 MsG0280010281.01.T01:intron 45.0%
GGATCGCAAATCTTCTCAGA+AGG - Chr2:67184327-67184346 MsG0280010281.01.T01:intron 45.0%
TCCTTTCCTTGGTCAAAGGA+AGG - Chr2:67183241-67183260 MsG0280010281.01.T01:three_prime_UTR 45.0%
TCGCAAATCTTCTCAGAAGG+TGG - Chr2:67184330-67184349 MsG0280010281.01.T01:intron 45.0%
TCTTAGAGATGTTGTCGCCA+TGG - Chr2:67183277-67183296 MsG0280010281.01.T01:three_prime_UTR 45.0%
TGAAGGTGATCCATGGAAGA+TGG - Chr2:67184214-67184233 MsG0280010281.01.T01:intron 45.0%
TGGCATAACCCAGGCATTAT+TGG + Chr2:67184685-67184704 None:intergenic 45.0%
TGTCACTGGTAAAGGACCTT+TGG - Chr2:67184626-67184645 MsG0280010281.01.T01:intron 45.0%
TGTCCCATCCATAATCACCA+GGG + Chr2:67183981-67184000 None:intergenic 45.0%
! GAACCAGTTTGGTTCAAAGC+AGG - Chr2:67184306-67184325 MsG0280010281.01.T01:intron 45.0%
! GACAACATCTCTAAGAGGGT+TGG + Chr2:67183273-67183292 None:intergenic 45.0%
! GATCCTGCTTTGAACCAAAC+TGG + Chr2:67184312-67184331 None:intergenic 45.0%
! GTTCTAATGGGTCTTGTCGA+AGG - Chr2:67184423-67184442 MsG0280010281.01.T01:intron 45.0%
! TGACTTCCTTGTTGGTTGGT+TGG + Chr2:67184898-67184917 None:intergenic 45.0%
! TGGCGACAACATCTCTAAGA+GGG + Chr2:67183277-67183296 None:intergenic 45.0%
!! CAGAAGCATTTGCCAAGAAC+AGG - Chr2:67184022-67184041 MsG0280010281.01.T01:intron 45.0%
AACCTCAAGAGCCCTGTTCT+TGG + Chr2:67184037-67184056 None:intergenic 50.0%
ACCCAGGCATTATTGGCAAC+AGG + Chr2:67184678-67184697 None:intergenic 50.0%
ACCCTGTTGCCAATAATGCC+TGG - Chr2:67184673-67184692 MsG0280010281.01.T01:intron 50.0%
AGAACCAGGCACAAACTTGG+TGG + Chr2:67184705-67184724 None:intergenic 50.0%
ATCAACGGTCTTCCTGGTGT+CGG - Chr2:67184453-67184472 MsG0280010281.01.T01:intron 50.0%
CCCAGGCATTATTGGCAACA+GGG + Chr2:67184677-67184696 None:intergenic 50.0%
CCCTGTTGCCAATAATGCCT+GGG - Chr2:67184674-67184693 MsG0280010281.01.T01:intron 50.0%
CCCTTCCTTTGACCAAGGAA+AGG + Chr2:67183245-67183264 None:intergenic 50.0%
CTAGCATAGCCCATCTTCCA+TGG + Chr2:67184227-67184246 None:intergenic 50.0%
GATTATGGATGGGACACTGC+TGG - Chr2:67183985-67184004 MsG0280010281.01.T01:intron 50.0%
GGCCAATACTTTGACCCTCT+TGG - Chr2:67184501-67184520 MsG0280010281.01.T01:intron 50.0%
GGGAACCTCAAGATTCACCA+TGG - Chr2:67183298-67183317 MsG0280010281.01.T01:three_prime_UTR 50.0%
GGTGAATCTTGAGGTTCCCA+TGG + Chr2:67183297-67183316 None:intergenic 50.0%
GTGTCCCATCCATAATCACC+AGG + Chr2:67183982-67184001 None:intergenic 50.0%
TATGCCACCAAGTTTGTGCC+TGG - Chr2:67184698-67184717 MsG0280010281.01.T01:intron 50.0%
TGTAGCAGCCATCAATGCCA+TGG + Chr2:67183192-67183211 None:intergenic 50.0%
! CAAACTTGGTGGCATAACCC+AGG + Chr2:67184694-67184713 None:intergenic 50.0%
!! AGTATTGGCCACCAGGGTAA+AGG + Chr2:67184491-67184510 None:intergenic 50.0%
!! CATGGAAGATGGGCTATGCT+AGG - Chr2:67184225-67184244 MsG0280010281.01.T01:intron 50.0%
!! GGTCAAAGTATTGGCCACCA+GGG + Chr2:67184497-67184516 None:intergenic 50.0%
CACCAGGAAGACCGTTGATG+CGG + Chr2:67184452-67184471 None:intergenic 55.0%
CAGCACCCTTCCTTTGACCA+AGG + Chr2:67183250-67183269 None:intergenic 55.0%
GAGGGCAACAACCTTTACCC+TGG - Chr2:67184477-67184496 MsG0280010281.01.T01:intron 55.0%
GGCAACAACCTTTACCCTGG+TGG - Chr2:67184480-67184499 MsG0280010281.01.T01:intron 55.0%
GTCGAAGGGTTCCGCATCAA+CGG - Chr2:67184438-67184457 MsG0280010281.01.T01:intron 55.0%
TGCCAAGAACAGGGCTCTTG+AGG - Chr2:67184032-67184051 MsG0280010281.01.T01:intron 55.0%
TTCCGCATCAACGGTCTTCC+TGG - Chr2:67184447-67184466 MsG0280010281.01.T01:intron 55.0%
! GATCGTCGGCTAGACCAAGA+GGG + Chr2:67184518-67184537 None:intergenic 55.0%
!! GGGTCAAAGTATTGGCCACC+AGG + Chr2:67184498-67184517 None:intergenic 55.0%
!! TGGGCTATGCTAGGAGCACT+CGG - Chr2:67184234-67184253 MsG0280010281.01.T01:intron 55.0%
TTGTTGCCCTCTCCGACACC+AGG + Chr2:67184468-67184487 None:intergenic 60.0%
! GGATCGTCGGCTAGACCAAG+AGG + Chr2:67184519-67184538 None:intergenic 60.0%
! GGTCTTCCTGGTGTCGGAGA+GGG - Chr2:67184459-67184478 MsG0280010281.01.T01:intron 60.0%
! CGGTCTTCCTGGTGTCGGAG+AGG - Chr2:67184458-67184477 MsG0280010281.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 67183109 67184996 67183109 ID=MsG0280010281.01;Name=MsG0280010281.01
Chr2 mRNA 67183109 67184996 67183109 ID=MsG0280010281.01.T01;Parent=MsG0280010281.01;Name=MsG0280010281.01.T01;_AED=0.49;_eAED=0.49;_QI=82|0.5|0.66|1|1|1|3|250|252
Chr2 exon 67183109 67183886 67183109 ID=MsG0280010281.01.T01:exon:5544;Parent=MsG0280010281.01.T01
Chr2 exon 67184052 67184153 67184052 ID=MsG0280010281.01.T01:exon:5543;Parent=MsG0280010281.01.T01
Chr2 exon 67184786 67184996 67184786 ID=MsG0280010281.01.T01:exon:5542;Parent=MsG0280010281.01.T01
Chr2 five_prime_UTR 67184915 67184996 67184915 ID=MsG0280010281.01.T01:five_prime_utr;Parent=MsG0280010281.01.T01
Chr2 CDS 67184786 67184914 67184786 ID=MsG0280010281.01.T01:cds;Parent=MsG0280010281.01.T01
Chr2 CDS 67184052 67184153 67184052 ID=MsG0280010281.01.T01:cds;Parent=MsG0280010281.01.T01
Chr2 CDS 67183359 67183886 67183359 ID=MsG0280010281.01.T01:cds;Parent=MsG0280010281.01.T01
Chr2 three_prime_UTR 67183109 67183358 67183109 ID=MsG0280010281.01.T01:three_prime_utr;Parent=MsG0280010281.01.T01
Gene Sequence

>MsG0280010281.01.T01

ATGGCATTGATGGCTGCTACAGCAAGTTCAGCAGCTGTTGTTAAACAAACTCCTTTCCTTGGTCAAAGGAAGGGTGCTGCCAACCCTCTTAGAGATGTTGTCGCCATGGGAACCTCAAGATTCACCATGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGATTATGGATGGGACACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGAAGATGGGCTATGCTAGGAGCACTCGGATGCATCACACCTGAAGTACTTGAAAAATGGGTGAGAGTTGATTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCGCAAATCTTCTCAGAAGGTGGTCTTGACTATTTAGGGAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGTCTTGTCGAAGGGTTCCGCATCAACGGTCTTCCTGGTGTCGGAGAGGGCAACAACCTTTACCCTGGTGGCCAATACTTTGACCCTCTTGGTCTAGCCGACGATCCAGTTACTTTCGCTGAGCTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTCACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGACAACCCTGTTGCCAATAATGCCTGGGTTATGCCACCAAGTTTGTGCCTGGTTCTTAAACATCAATGTTATCTATGA

Protein sequence

>MsG0280010281.01.T01

MALMAATASSAAVVKQTPFLGQRKGAANPLRDVVAMGTSRFTMTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVMPPSLCLVLKHQCYL*