AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003990 MtrunA17_Chr7g0214541 97.970 394 8 0 1 394 1 394 0.0 796
Msa1003990 MtrunA17_Chr8g0365721 67.708 384 113 6 7 385 26 403 2.81e-177 499
Msa1003990 MtrunA17_Chr5g0431451 38.806 335 170 10 48 355 60 386 3.45e-58 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003990 AT1G18480.1 62.785 395 135 7 5 394 4 391 1.74e-172 487
Msa1003990 AT1G07010.1 36.036 333 184 9 48 356 49 376 2.39e-53 182
Msa1003990 AT1G07010.2 35.435 333 182 10 48 356 49 372 1.56e-49 172
Msa1003990 AT1G07010.3 34.302 344 186 9 48 356 49 387 2.41e-47 166

Find 149 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAAAGAATAAGTATTT+TGG 0.152000 7_1:-1067552 None:intergenic
GGGCTAGGGTTGCGGCTTTA+AGG 0.182522 7_1:+1068421 Msa1003990:CDS
AATCAAAATCCTCTACTTAT+TGG 0.186269 7_1:+1067952 Msa1003990:CDS
TTGGAAGAACATGTTGATTA+TGG 0.215908 7_1:+1068531 Msa1003990:CDS
AAGAGAGGAGATTGGGAATT+TGG 0.242761 7_1:-1067673 None:intergenic
TGAGGTTAGTGATTGGTATA+AGG 0.246230 7_1:+1068572 Msa1003990:CDS
AAGAGTTTCATGATGGGTTT+AGG 0.248900 7_1:+1068400 Msa1003990:CDS
TGGTGTTAAGAGGATGATTA+TGG 0.249368 7_1:+1068719 Msa1003990:CDS
AGCGATGCTGAGAGCTTCTT+TGG 0.259223 7_1:-1067843 None:intergenic
TAAGGCAGATGTTGCAATAA+AGG 0.267948 7_1:+1069140 Msa1003990:three_prime_UTR
TCATTCTTGTGCTTTGGAAT+TGG 0.276219 7_1:+1069167 Msa1003990:three_prime_UTR
ACGTGGCGTTTCGTGGTGTT+AGG 0.288942 7_1:+1068376 Msa1003990:CDS
AAGTCAAGGCTTAGGCTTAA+TGG 0.304590 7_1:+1068991 Msa1003990:exon
TGAAATTGTTTAGATTATTA+AGG 0.305893 7_1:+1069122 Msa1003990:three_prime_UTR
TGGTGGTTTGCCTGAGGTTT+TGG 0.307447 7_1:+1068827 Msa1003990:CDS
TTATCCATCTGATTATATAA+AGG 0.310568 7_1:-1068888 None:intergenic
TAATGGTGTCTGCGAAAATA+AGG 0.312538 7_1:+1068767 Msa1003990:CDS
TACACAAAATGTTACTGTTT+TGG 0.322237 7_1:+1068473 Msa1003990:CDS
CAATGGTATTTACAACATTC+AGG 0.335237 7_1:+1069047 Msa1003990:three_prime_UTR
GGTTTCTCATTCTTGTGCTT+TGG 0.337081 7_1:+1069161 Msa1003990:three_prime_UTR
ATTCAGAAGGAAGGGATTAA+TGG 0.345605 7_1:+1068750 Msa1003990:CDS
GACAATAAGGCGGCGAAAAC+CGG 0.357356 7_1:-1068608 None:intergenic
GAGGTTAGTGATTGGTATAA+GGG 0.359259 7_1:+1068573 Msa1003990:CDS
GATTGGTATAAGGGTTTGTT+TGG 0.360244 7_1:+1068582 Msa1003990:CDS
ATCGCCATCGGCGACCTTCA+TGG 0.361491 7_1:+1067806 Msa1003990:CDS
GGGAAGGTGGAAGAAGGGTT+TGG 0.362537 7_1:+1068927 Msa1003990:CDS
CGAATGGACCGATTTCAAAA+AGG 0.363226 7_1:+1068445 Msa1003990:CDS
GGTGGTGATGATGGCGGAGG+TGG 0.369542 7_1:-1067746 None:intergenic
CGCAGGTGGCCTAGTCGATA+TGG 0.371096 7_1:+1071280 Msa1003990:three_prime_UTR
AGAGTTTCATGATGGGTTTA+GGG 0.373309 7_1:+1068401 Msa1003990:CDS
GCATTCCTTCCCCGACAATA+AGG 0.375199 7_1:-1068621 None:intergenic
TTCATGATGGGTTTAGGGCT+AGG 0.377495 7_1:+1068406 Msa1003990:CDS
TTCTTGTGCTTTGGAATTGG+AGG 0.382678 7_1:+1069170 Msa1003990:three_prime_UTR
GGGGAAGGAATGCACTTGTT+TGG 0.383176 7_1:+1068631 Msa1003990:CDS
AATTCAAAGTTTGGTTAGAA+TGG 0.384906 7_1:+1068277 Msa1003990:CDS
TATGGGTTGGAGAAGATTAA+TGG 0.389368 7_1:+1068549 Msa1003990:CDS
ATGGCGGAGGTGGGAGGAAG+AGG 0.396791 7_1:-1067736 None:intergenic
TGATGGTGGCTGGCGGCCGC+AGG 0.398620 7_1:+1071263 Msa1003990:three_prime_UTR
ATATGCTCTCTCAACTTTGC+TGG 0.401538 7_1:+1071209 Msa1003990:three_prime_UTR
ATAAGGGTTTGTTTGGTAAC+CGG 0.411872 7_1:+1068589 Msa1003990:CDS
AAACGCCAAGCTGCGATTCA+TGG 0.419343 7_1:+1067983 Msa1003990:CDS
TATAATGTGAATGTGGTTGA+TGG 0.419983 7_1:+1071246 Msa1003990:three_prime_UTR
GGGATTGGCGGTGGTGATGA+TGG 0.421506 7_1:-1067755 None:intergenic
CCACGATTCCTGGTGTTAAG+AGG 0.423067 7_1:+1068709 Msa1003990:CDS
TCATGATGGGTTTAGGGCTA+GGG 0.424497 7_1:+1068407 Msa1003990:CDS
TGGAAGAACATGTTGATTAT+GGG 0.427253 7_1:+1068532 Msa1003990:CDS
GATCTCGTGGTTACCATTCA+TGG 0.435438 7_1:-1068020 None:intergenic
ATGAATGAAGAGAGGAGATT+GGG 0.441668 7_1:-1067680 None:intergenic
GGTAATTTCATCACCATGAA+TGG 0.447962 7_1:+1068007 Msa1003990:CDS
CGTGGCGTTTCGTGGTGTTA+GGG 0.450367 7_1:+1068377 Msa1003990:CDS
CGCCGCCTTATTGTCGGGGA+AGG 0.455393 7_1:+1068616 Msa1003990:CDS
AATGTTCACGTGGCGTTTCG+TGG 0.456234 7_1:+1068369 Msa1003990:CDS
GCGATTAAGCGTGACGGAGA+AGG 0.456235 7_1:-1067788 None:intergenic
AGACGAGTGGGGATTGGCGG+TGG 0.458588 7_1:-1067764 None:intergenic
TCTGCGAAAATAAGGCGATT+AGG 0.459167 7_1:+1068775 Msa1003990:CDS
GATGAATGAAGAGAGGAGAT+TGG 0.459978 7_1:-1067681 None:intergenic
TCAAATCACGGAGCTGCCTT+AGG 0.460342 7_1:-1071306 None:intergenic
GAAGGGAGACGAGTGGGGAT+TGG 0.462319 7_1:-1067770 None:intergenic
GATGTTGGGAAGGTGGAAGA+AGG 0.466879 7_1:+1068921 Msa1003990:CDS
GTGTTGAAGAATTCAAAGTT+TGG 0.468250 7_1:+1068268 Msa1003990:CDS
GGGAGACGAGTGGGGATTGG+CGG 0.470682 7_1:-1067767 None:intergenic
GATAAGGAAAATGTGGATGT+TGG 0.471510 7_1:+1068906 Msa1003990:CDS
TGGGTTTAGGGCTAGGGTTG+CGG 0.472943 7_1:+1068413 Msa1003990:CDS
AAAGAAGCTCTCAGCATCGC+TGG 0.475144 7_1:+1067845 Msa1003990:CDS
GGTGTTAAGAGGATGATTAT+GGG 0.476200 7_1:+1068720 Msa1003990:CDS
TTTATATAATCAGATGGATA+AGG 0.478801 7_1:+1068890 Msa1003990:CDS
ATGTAAAGGTTTGGAAGAAA+CGG 0.488928 7_1:+1068329 Msa1003990:CDS
GTGGTGATGATGGCGGAGGT+GGG 0.495874 7_1:-1067745 None:intergenic
TTTCATCGCCTCCGCGGTCG+AGG 0.498726 7_1:-1067931 None:intergenic
ATTGGCGGTGGTGATGATGG+CGG 0.499192 7_1:-1067752 None:intergenic
AAATGTGGATGTTGGGAAGG+TGG 0.504316 7_1:+1068914 Msa1003990:CDS
GTTAGGGAAGAGTTTCATGA+TGG 0.506126 7_1:+1068393 Msa1003990:CDS
GAGCTTCTTTGGATTTCTTG+AGG 0.507362 7_1:-1067832 None:intergenic
ATGTTGGGAAGGTGGAAGAA+GGG 0.512967 7_1:+1068922 Msa1003990:CDS
CGATTAAGCGTGACGGAGAA+GGG 0.514080 7_1:-1067787 None:intergenic
TCATTACAAGCACTGAGTCT+TGG 0.520356 7_1:+1071351 Msa1003990:three_prime_UTR
AGATTGACCGTTATGGGGTG+AGG 0.524683 7_1:+1068850 Msa1003990:CDS
TCAGATGGATAAGGAAAATG+TGG 0.526477 7_1:+1068899 Msa1003990:CDS
GACGGAGAAGGGAGACGAGT+GGG 0.526921 7_1:-1067776 None:intergenic
TATGCTCTCTCAACTTTGCT+GGG 0.528236 7_1:+1071210 Msa1003990:three_prime_UTR
GCCTTGACTTCCACTTGCCT+AGG 0.528320 7_1:-1068978 None:intergenic
TGGTGGCTGGCGGCCGCAGG+TGG 0.528616 7_1:+1071266 Msa1003990:three_prime_UTR
GTGATGATGGCGGAGGTGGG+AGG 0.530592 7_1:-1067742 None:intergenic
ATTTCTTGAGGTCACCATGA+AGG 0.532881 7_1:-1067820 None:intergenic
GCAAGTGGAAGTCAAGGCTT+AGG 0.533119 7_1:+1068983 Msa1003990:CDS
ATGTCGAAAGGATGCGGTGG+TGG 0.533822 7_1:+1068810 Msa1003990:CDS
AGACCCGCCTGTGTAATTAC+CGG 0.535770 7_1:-1067882 None:intergenic
CGGTCAATCTCCAAAACCTC+AGG 0.539656 7_1:-1068837 None:intergenic
TTAATGGTGAGGTTAGTGAT+TGG 0.539710 7_1:+1068565 Msa1003990:CDS
GACATCGCCGACTTGAACGA+CGG 0.541832 7_1:-1067909 None:intergenic
ATAAGGAAAATGTGGATGTT+GGG 0.548289 7_1:+1068907 Msa1003990:CDS
ACCTAGGCAAGTGGAAGTCA+AGG 0.549753 7_1:+1068977 Msa1003990:CDS
TTAGGGAAGAGTTTCATGAT+GGG 0.558605 7_1:+1068394 Msa1003990:CDS
GGGCATACAATTCAGAAGGA+AGG 0.558627 7_1:+1068741 Msa1003990:CDS
TGAATGTGGTTGATGGTGGC+TGG 0.559605 7_1:+1071253 Msa1003990:three_prime_UTR
GGCGGTGGTGATGATGGCGG+AGG 0.566588 7_1:-1067749 None:intergenic
TACCACCATGAATCGCAGCT+TGG 0.567664 7_1:-1067988 None:intergenic
TTGTTGCTTAATAATCAAGA+TGG 0.574078 7_1:+1068951 Msa1003990:CDS
ATCGATGTTGGTATGTCGAA+AGG 0.575221 7_1:+1068798 Msa1003990:CDS
GTTGGAGAAGATTAATGGTG+AGG 0.579243 7_1:+1068554 Msa1003990:CDS
CTAGTCGATATGGTGGCCTA+AGG 0.579920 7_1:+1071290 Msa1003990:three_prime_UTR
GTCACCATGAAGGTCGCCGA+TGG 0.581316 7_1:-1067810 None:intergenic
AAATCCTTTATATAATCAGA+TGG 0.582275 7_1:+1068884 Msa1003990:CDS
GGCATACAATTCAGAAGGAA+GGG 0.587056 7_1:+1068742 Msa1003990:CDS
TCAATATCCTCACCCCATAA+CGG 0.588832 7_1:-1068857 None:intergenic
CCGTCACGCTTAATCGCCAT+CGG 0.590350 7_1:+1067794 Msa1003990:CDS
TGGTTAGAATGGTTTCGTCA+AGG 0.592125 7_1:+1068288 Msa1003990:CDS
CTTAGGCCACCATATCGACT+AGG 0.592796 7_1:-1071289 None:intergenic
GAGGAAGAGGCCGCCGCTGA+CGG 0.594638 7_1:-1067723 None:intergenic
TCTGCCACCGTCGTTCAAGT+CGG 0.596345 7_1:+1067902 Msa1003990:CDS
CACGAGATCATGAACGCTGA+AGG 0.599053 7_1:+1068034 Msa1003990:CDS
GTCGACTTCTCCGTCAGCGG+CGG 0.604792 7_1:+1067713 Msa1003990:CDS
AGAACATGTTGATTATGGGT+TGG 0.606486 7_1:+1068536 Msa1003990:CDS
CCTCTTAACACCAGGAATCG+TGG 0.606831 7_1:-1068709 None:intergenic
AAGGCGATTAGGATCGATGT+TGG 0.608483 7_1:+1068786 Msa1003990:CDS
GCTGGATTAATCGACTCCTC+CGG 0.608767 7_1:+1067863 Msa1003990:CDS
TATGGGGCATACAATTCAGA+AGG 0.610264 7_1:+1068737 Msa1003990:CDS
GGAAAATGTGGATGTTGGGA+AGG 0.610345 7_1:+1068911 Msa1003990:CDS
AGGCAGCTCCGTGATTTGAG+AGG 0.610529 7_1:+1071310 Msa1003990:three_prime_UTR
CTTCAGCGTTCATGATCTCG+TGG 0.614365 7_1:-1068033 None:intergenic
CCTCCGGTAATTACACAGGC+GGG 0.615462 7_1:+1067879 Msa1003990:CDS
ATAATCATCCTCTTAACACC+AGG 0.619952 7_1:-1068717 None:intergenic
GTTGCGGCTTTAAGGCCGAA+TGG 0.620496 7_1:+1068429 Msa1003990:CDS
TGGAATCGAATTCGATACAA+TGG 0.620712 7_1:+1069030 Msa1003990:three_prime_UTR
TTTGGAGATTGACCGTTATG+GGG 0.621026 7_1:+1068845 Msa1003990:CDS
AGGTGGCCTAGTCGATATGG+TGG 0.626463 7_1:+1071283 Msa1003990:three_prime_UTR
ACGGAGAAGGGAGACGAGTG+GGG 0.626496 7_1:-1067775 None:intergenic
ATAATCAAGATGGTAGACCT+AGG 0.629740 7_1:+1068961 Msa1003990:CDS
GTGTTAAGAGGATGATTATG+GGG 0.631883 7_1:+1068721 Msa1003990:CDS
AATGTGAATGTGGTTGATGG+TGG 0.634525 7_1:+1071249 Msa1003990:three_prime_UTR
TTTGTCGACTTCTCCGTCAG+CGG 0.640574 7_1:+1067710 Msa1003990:CDS
TCCTCCGGTAATTACACAGG+CGG 0.640731 7_1:+1067878 Msa1003990:CDS
AGATGGTAGACCTAGGCAAG+TGG 0.641426 7_1:+1068968 Msa1003990:CDS
ATGTGTCGATGAATGAAGAG+AGG 0.641912 7_1:-1067688 None:intergenic
GTTGGTATGTCGAAAGGATG+CGG 0.642403 7_1:+1068804 Msa1003990:CDS
ATGCGGTGGTGGTTTGCCTG+AGG 0.644481 7_1:+1068821 Msa1003990:CDS
GACTCCTCCGGTAATTACAC+AGG 0.646647 7_1:+1067875 Msa1003990:CDS
TTCCTTCCCCGACAATAAGG+CGG 0.649751 7_1:-1068618 None:intergenic
TGACGGAGAAGGGAGACGAG+TGG 0.654416 7_1:-1067777 None:intergenic
GGCGATGTCCTCGACCGCGG+AGG 0.659166 7_1:+1067923 Msa1003990:CDS
ATGTGGTTGATGGTGGCTGG+CGG 0.661686 7_1:+1071256 Msa1003990:three_prime_UTR
CCCGCCTGTGTAATTACCGG+AGG 0.664457 7_1:-1067879 None:intergenic
CGCCAAGCTGCGATTCATGG+TGG 0.670948 7_1:+1067986 Msa1003990:CDS
CCGATGGCGATTAAGCGTGA+CGG 0.678270 7_1:-1067794 None:intergenic
TCCGTTAGAAAATGTTCACG+TGG 0.680750 7_1:+1068359 Msa1003990:CDS
CATATCGACTAGGCCACCTG+CGG 0.704326 7_1:-1071279 None:intergenic
ATCGCCGACTTGAACGACGG+TGG 0.711479 7_1:-1067906 None:intergenic
GGTATGTCGAAAGGATGCGG+TGG 0.743976 7_1:+1068807 Msa1003990:CDS
ACATTATGCAACAATCACTG+CGG 0.795278 7_1:+1069071 Msa1003990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAAAGAATAAGTATTT+TGG - chr7_1:1067555-1067574 None:intergenic 15.0%
!! AAAATGAAAAATCTATGTAA+AGG + chr7_1:1068315-1068334 Msa1003990:CDS 15.0%
!! TGAAATTGTTTAGATTATTA+AGG + chr7_1:1069122-1069141 Msa1003990:three_prime_UTR 15.0%
!!! TTTCCTTTAATTTTTTTAGT+GGG + chr7_1:1069425-1069444 Msa1003990:intron 15.0%
!!! GAAGTATCAAATAAATTTTT+TGG + chr7_1:1070088-1070107 Msa1003990:intron 15.0%
!! AAAACATGTCTAATAATAAA+AGG + chr7_1:1070181-1070200 Msa1003990:intron 15.0%
!! AAACATGTCTAATAATAAAA+GGG + chr7_1:1070182-1070201 Msa1003990:intron 15.0%
!!! AGAATAAGTATTTTGGATTT+TGG - chr7_1:1067548-1067567 None:intergenic 20.0%
!! TTTAAAAATCAAAAGCTGTT+TGG - chr7_1:1067582-1067601 None:intergenic 20.0%
!!! ATTTTTTTGTTGTTTACACT+AGG + chr7_1:1068059-1068078 Msa1003990:intron 20.0%
!!! TTAGTATTGAGTAATTTGAT+TGG - chr7_1:1068116-1068135 None:intergenic 20.0%
!! AAATCCTTTATATAATCAGA+TGG + chr7_1:1068884-1068903 Msa1003990:CDS 20.0%
!! TTATCCATCTGATTATATAA+AGG - chr7_1:1068891-1068910 None:intergenic 20.0%
!! TTTATATAATCAGATGGATA+AGG + chr7_1:1068890-1068909 Msa1003990:CDS 20.0%
!!! GTTTCCTTTAATTTTTTTAG+TGG + chr7_1:1069424-1069443 Msa1003990:intron 20.0%
!!! TTTTACTGTTGATATAGTTT+GGG + chr7_1:1069508-1069527 Msa1003990:intron 20.0%
!! TCTGAATACAAATATATACT+AGG + chr7_1:1069592-1069611 Msa1003990:intron 20.0%
!! AATACAAATATATACTAGGA+AGG + chr7_1:1069596-1069615 Msa1003990:intron 20.0%
!!! GTAACTAAATTTTGTTCAAT+TGG - chr7_1:1069666-1069685 None:intergenic 20.0%
!! TGAAAATATTTCAAATAAGC+CGG + chr7_1:1069937-1069956 Msa1003990:intron 20.0%
!!! GTATCAAATAAATTTTTTGG+CGG + chr7_1:1070091-1070110 Msa1003990:intron 20.0%
!!! TATCAAATAAATTTTTTGGC+GGG + chr7_1:1070092-1070111 Msa1003990:intron 20.0%
!!! TCTTTTAATTTGATCATAAG+AGG - chr7_1:1070934-1070953 None:intergenic 20.0%
!!! CAATGCAATATTTTTATGTT+TGG - chr7_1:1071067-1071086 None:intergenic 20.0%
!! TGATGTATTCAATTTCTTTA+AGG + chr7_1:1071093-1071112 Msa1003990:intron 20.0%
!! ACATTCACATTATAAAAAGT+TGG - chr7_1:1071240-1071259 None:intergenic 20.0%
!!! AACTTTTTATAATGTGAATG+TGG + chr7_1:1071239-1071258 Msa1003990:three_prime_UTR 20.0%
!! TTTGAGAGGTTAAAAAATAT+AGG + chr7_1:1071324-1071343 Msa1003990:three_prime_UTR 20.0%
!! TTGAGAGGTTAAAAAATATA+GGG + chr7_1:1071325-1071344 Msa1003990:three_prime_UTR 20.0%
!!! TTTTCGATTTCCATTTTTAC+TGG - chr7_1:1067629-1067648 None:intergenic 25.0%
! AATCAAAATCCTCTACTTAT+TGG + chr7_1:1067952-1067971 Msa1003990:CDS 25.0%
! AATTCAAAGTTTGGTTAGAA+TGG + chr7_1:1068277-1068296 Msa1003990:CDS 25.0%
! GAAAAATCTATGTAAAGGTT+TGG + chr7_1:1068320-1068339 Msa1003990:CDS 25.0%
!!! GTAAAGAACCTTTTTGAAAT+CGG - chr7_1:1068456-1068475 None:intergenic 25.0%
!! TACACAAAATGTTACTGTTT+TGG + chr7_1:1068473-1068492 Msa1003990:CDS 25.0%
!! TTGTTGCTTAATAATCAAGA+TGG + chr7_1:1068951-1068970 Msa1003990:CDS 25.0%
! GAACTATAAAACCTAAGTAA+AGG - chr7_1:1069205-1069224 None:intergenic 25.0%
! CTTAGTACATGATTAATTCT+TGG + chr7_1:1069290-1069309 Msa1003990:intron 25.0%
! AAAGTCAAGCATTCAATTAT+AGG - chr7_1:1069403-1069422 None:intergenic 25.0%
! AGACCCACTAAAAAAATTAA+AGG - chr7_1:1069431-1069450 None:intergenic 25.0%
!!! ATTTTTTTAGTGGGTCTTTA+AGG + chr7_1:1069434-1069453 Msa1003990:intron 25.0%
!! AGGAAAATATAGAGTTTGTT+TGG + chr7_1:1069454-1069473 Msa1003990:intron 25.0%
!! CTTTTACTGTTGATATAGTT+TGG + chr7_1:1069507-1069526 Msa1003990:intron 25.0%
! AAATATATACTAGGAAGGAA+AGG + chr7_1:1069601-1069620 Msa1003990:intron 25.0%
! AATATATACTAGGAAGGAAA+GGG + chr7_1:1069602-1069621 Msa1003990:intron 25.0%
! AATTGTAGTTAATCTTAGCT+TGG + chr7_1:1069699-1069718 Msa1003990:intron 25.0%
! ACAAAGTTGTGGAAAATATA+AGG + chr7_1:1069724-1069743 Msa1003990:intron 25.0%
! AGAAGTTGCAAGAATTATAT+AGG + chr7_1:1070066-1070085 Msa1003990:intron 25.0%
! GTTGAAAATATGCATTTATC+AGG + chr7_1:1070601-1070620 Msa1003990:intron 25.0%
!! GTGAAATGTGTTTTCAAATT+TGG - chr7_1:1070700-1070719 None:intergenic 25.0%
! ATTTGAAAACACATTTCACA+TGG + chr7_1:1070701-1070720 Msa1003990:intron 25.0%
!! TACTAATCAAACTTTTCACA+AGG - chr7_1:1070998-1071017 None:intergenic 25.0%
!! TGTATTCAATTTCTTTAAGG+TGG + chr7_1:1071096-1071115 Msa1003990:intron 25.0%
!!! TTTTTTAACCTCTCAAATCA+CGG - chr7_1:1071321-1071340 None:intergenic 25.0%
TGAGCTTATTCCAGTAAAAA+TGG + chr7_1:1067616-1067635 Msa1003990:exon 30.0%
! ACTATTCTTTTCTCTGTTGA+AGG + chr7_1:1068219-1068238 Msa1003990:intron 30.0%
GTGTTGAAGAATTCAAAGTT+TGG + chr7_1:1068268-1068287 Msa1003990:CDS 30.0%
ATGTAAAGGTTTGGAAGAAA+CGG + chr7_1:1068329-1068348 Msa1003990:CDS 30.0%
!!! AATGTTACTGTTTTGGTAGT+TGG + chr7_1:1068480-1068499 Msa1003990:CDS 30.0%
! GGTGATTCAATTTTTGTTCA+TGG + chr7_1:1068501-1068520 Msa1003990:CDS 30.0%
! GATTCAATTTTTGTTCATGG+TGG + chr7_1:1068504-1068523 Msa1003990:CDS 30.0%
! TTGGAAGAACATGTTGATTA+TGG + chr7_1:1068531-1068550 Msa1003990:CDS 30.0%
! TGGAAGAACATGTTGATTAT+GGG + chr7_1:1068532-1068551 Msa1003990:CDS 30.0%
! TGGCTTAGAAAATTTTCAGA+TGG + chr7_1:1068651-1068670 Msa1003990:CDS 30.0%
! GGCTTAGAAAATTTTCAGAT+GGG + chr7_1:1068652-1068671 Msa1003990:CDS 30.0%
ATAAGGAAAATGTGGATGTT+GGG + chr7_1:1068907-1068926 Msa1003990:CDS 30.0%
!!! ATGGCTTTTTTGTTATCAGT+TGG + chr7_1:1069010-1069029 Msa1003990:three_prime_UTR 30.0%
CAATGGTATTTACAACATTC+AGG + chr7_1:1069047-1069066 Msa1003990:three_prime_UTR 30.0%
ATTCTTTAGTGAGTAGAATC+TGG + chr7_1:1069225-1069244 Msa1003990:intron 30.0%
TCATGTACTAAGATCAATGA+TGG - chr7_1:1069282-1069301 None:intergenic 30.0%
!!! TGTACTCTGCAGTTTTAAAA+TGG - chr7_1:1069377-1069396 None:intergenic 30.0%
ATATATACTAGGAAGGAAAG+GGG + chr7_1:1069603-1069622 Msa1003990:intron 30.0%
!! GTTAGTTTAGCTTTGTTAGT+TGG - chr7_1:1069635-1069654 None:intergenic 30.0%
TGTGGAAAATATAAGGATCT+AGG + chr7_1:1069731-1069750 Msa1003990:intron 30.0%
!!! AAGCTAGTTCCTTTTTTCAT+AGG + chr7_1:1069867-1069886 Msa1003990:intron 30.0%
AAATATTTCAAATAAGCCGG+AGG + chr7_1:1069940-1069959 Msa1003990:intron 30.0%
TTGTTGAAGAACGATCTATA+AGG - chr7_1:1069987-1070006 None:intergenic 30.0%
!! AATAAGCTATTTCTAGCTCT+AGG + chr7_1:1070242-1070261 Msa1003990:intron 30.0%
ATTACCTAAGTAATGAAGCA+TGG + chr7_1:1070395-1070414 Msa1003990:intron 30.0%
ATTTCCATGCTTCATTACTT+AGG - chr7_1:1070402-1070421 None:intergenic 30.0%
AATGAAGCATGGAAATAGTT+TGG + chr7_1:1070406-1070425 Msa1003990:intron 30.0%
ATGAAGCATGGAAATAGTTT+GGG + chr7_1:1070407-1070426 Msa1003990:intron 30.0%
ATTTCCATGCTTCATTACAT+AGG - chr7_1:1070439-1070458 None:intergenic 30.0%
AGTCTCATTAACTACTTTGT+TGG - chr7_1:1070629-1070648 None:intergenic 30.0%
CACACTTTACATGAGAAATT+TGG + chr7_1:1070665-1070684 Msa1003990:intron 30.0%
AATTCTTCCATAGGACAATT+GGG - chr7_1:1070805-1070824 None:intergenic 30.0%
AAATTCTTCCATAGGACAAT+TGG - chr7_1:1070806-1070825 None:intergenic 30.0%
! AATCAAACTTTTCACAAGGT+TGG - chr7_1:1070994-1071013 None:intergenic 30.0%
TTAGTAAACGCATACTACAT+AGG + chr7_1:1071012-1071031 Msa1003990:intron 30.0%
!!! TGCTAACAAGAGTTTTAAGA+CGG + chr7_1:1071039-1071058 Msa1003990:intron 30.0%
TATAATGTGAATGTGGTTGA+TGG + chr7_1:1071246-1071265 Msa1003990:three_prime_UTR 30.0%
ATGAATGAAGAGAGGAGATT+GGG - chr7_1:1067683-1067702 None:intergenic 35.0%
! TGAGCTTTTCCAATAAGTAG+AGG - chr7_1:1067964-1067983 None:intergenic 35.0%
GGTAATTTCATCACCATGAA+TGG + chr7_1:1068007-1068026 Msa1003990:CDS 35.0%
CAAATACAGCATGCTTTGAT+TGG + chr7_1:1068152-1068171 Msa1003990:intron 35.0%
! GTAGACAAGTTTTACACTGT+TGG + chr7_1:1068183-1068202 Msa1003990:intron 35.0%
TTCCGTTTCGCTACAAAAAA+CGG + chr7_1:1068246-1068265 Msa1003990:CDS 35.0%
TTAGGGAAGAGTTTCATGAT+GGG + chr7_1:1068394-1068413 Msa1003990:CDS 35.0%
!! AAGAGTTTCATGATGGGTTT+AGG + chr7_1:1068400-1068419 Msa1003990:CDS 35.0%
!! AGAGTTTCATGATGGGTTTA+GGG + chr7_1:1068401-1068420 Msa1003990:CDS 35.0%
!!! CTTTTTGAAATCGGTCCATT+CGG - chr7_1:1068447-1068466 None:intergenic 35.0%
!! TTTTGTTCATGGTGGTTTGT+TGG + chr7_1:1068512-1068531 Msa1003990:CDS 35.0%
! AGAACATGTTGATTATGGGT+TGG + chr7_1:1068536-1068555 Msa1003990:CDS 35.0%
!! TATGGGTTGGAGAAGATTAA+TGG + chr7_1:1068549-1068568 Msa1003990:CDS 35.0%
TTAATGGTGAGGTTAGTGAT+TGG + chr7_1:1068565-1068584 Msa1003990:CDS 35.0%
TGAGGTTAGTGATTGGTATA+AGG + chr7_1:1068572-1068591 Msa1003990:CDS 35.0%
GAGGTTAGTGATTGGTATAA+GGG + chr7_1:1068573-1068592 Msa1003990:CDS 35.0%
! GATTGGTATAAGGGTTTGTT+TGG + chr7_1:1068582-1068601 Msa1003990:CDS 35.0%
! ATAAGGGTTTGTTTGGTAAC+CGG + chr7_1:1068589-1068608 Msa1003990:CDS 35.0%
ATAATCATCCTCTTAACACC+AGG - chr7_1:1068720-1068739 None:intergenic 35.0%
! TGGTGTTAAGAGGATGATTA+TGG + chr7_1:1068719-1068738 Msa1003990:CDS 35.0%
GGTGTTAAGAGGATGATTAT+GGG + chr7_1:1068720-1068739 Msa1003990:CDS 35.0%
GTGTTAAGAGGATGATTATG+GGG + chr7_1:1068721-1068740 Msa1003990:CDS 35.0%
ATTCAGAAGGAAGGGATTAA+TGG + chr7_1:1068750-1068769 Msa1003990:CDS 35.0%
TAATGGTGTCTGCGAAAATA+AGG + chr7_1:1068767-1068786 Msa1003990:CDS 35.0%
!! TTTTGGAGATTGACCGTTAT+GGG + chr7_1:1068844-1068863 Msa1003990:CDS 35.0%
TCAGATGGATAAGGAAAATG+TGG + chr7_1:1068899-1068918 Msa1003990:CDS 35.0%
GATAAGGAAAATGTGGATGT+TGG + chr7_1:1068906-1068925 Msa1003990:CDS 35.0%
ATAATCAAGATGGTAGACCT+AGG + chr7_1:1068961-1068980 Msa1003990:CDS 35.0%
TGGAATCGAATTCGATACAA+TGG + chr7_1:1069030-1069049 Msa1003990:three_prime_UTR 35.0%
ACATTATGCAACAATCACTG+CGG + chr7_1:1069071-1069090 Msa1003990:three_prime_UTR 35.0%
TAAGGCAGATGTTGCAATAA+AGG + chr7_1:1069140-1069159 Msa1003990:three_prime_UTR 35.0%
!! TCATTCTTGTGCTTTGGAAT+TGG + chr7_1:1069167-1069186 Msa1003990:three_prime_UTR 35.0%
! GGTATTTGGTTCCTTTACTT+AGG + chr7_1:1069191-1069210 Msa1003990:intron 35.0%
! ATATAGAGTTTGTTTGGCCA+AGG + chr7_1:1069460-1069479 Msa1003990:intron 35.0%
! ATATTTTGTATATCCCGCCT+TGG - chr7_1:1069480-1069499 None:intergenic 35.0%
TATATACTAGGAAGGAAAGG+GGG + chr7_1:1069604-1069623 Msa1003990:intron 35.0%
! TTAGCTTGGTTACAAAGTTG+TGG + chr7_1:1069713-1069732 Msa1003990:intron 35.0%
!!! GTTCCTTTTTTCATAGGTGT+AGG + chr7_1:1069873-1069892 Msa1003990:intron 35.0%
TTGAAGAACGATCTATAAGG+AGG - chr7_1:1069984-1070003 None:intergenic 35.0%
GATCGTTCTTCAACAAAGTT+AGG + chr7_1:1069991-1070010 Msa1003990:intron 35.0%
TTGTTTGATCTATACACTCG+TGG - chr7_1:1070209-1070228 None:intergenic 35.0%
AGTACCTATGTAATGAAGCA+TGG + chr7_1:1070432-1070451 Msa1003990:intron 35.0%
AAGATCCATAGATCCAACAA+GGG + chr7_1:1070729-1070748 Msa1003990:intron 35.0%
TGAGAGTGAAATTCTTCCAT+AGG - chr7_1:1070814-1070833 None:intergenic 35.0%
AATTTCACTCTCAAGAAGCA+TGG + chr7_1:1070821-1070840 Msa1003990:intron 35.0%
! ATTTCACTCTCAAGAAGCAT+GGG + chr7_1:1070822-1070841 Msa1003990:intron 35.0%
! AACATCAAACCTTTTGCTAG+TGG + chr7_1:1070850-1070869 Msa1003990:intron 35.0%
CAATGAACTCAAAGGAAACT+TGG - chr7_1:1070905-1070924 None:intergenic 35.0%
GGCAAATTCAATGAACTCAA+AGG - chr7_1:1070913-1070932 None:intergenic 35.0%
!! AACTGAGGCACTTTTGTTTA+TGG + chr7_1:1071180-1071199 Msa1003990:intron 35.0%
AAGAGAGGAGATTGGGAATT+TGG - chr7_1:1067676-1067695 None:intergenic 40.0%
GATGAATGAAGAGAGGAGAT+TGG - chr7_1:1067684-1067703 None:intergenic 40.0%
! ATGTGTCGATGAATGAAGAG+AGG - chr7_1:1067691-1067710 None:intergenic 40.0%
ATTTCTTGAGGTCACCATGA+AGG - chr7_1:1067823-1067842 None:intergenic 40.0%
GAGCTTCTTTGGATTTCTTG+AGG - chr7_1:1067835-1067854 None:intergenic 40.0%
!!! CACCGTTTTTTGTAGCGAAA+CGG - chr7_1:1068251-1068270 None:intergenic 40.0%
TGGTTAGAATGGTTTCGTCA+AGG + chr7_1:1068288-1068307 Msa1003990:CDS 40.0%
TCCGTTAGAAAATGTTCACG+TGG + chr7_1:1068359-1068378 Msa1003990:CDS 40.0%
! GCCACGTGAACATTTTCTAA+CGG - chr7_1:1068363-1068382 None:intergenic 40.0%
GTTAGGGAAGAGTTTCATGA+TGG + chr7_1:1068393-1068412 Msa1003990:CDS 40.0%
! CGAATGGACCGATTTCAAAA+AGG + chr7_1:1068445-1068464 Msa1003990:CDS 40.0%
GTTGGAGAAGATTAATGGTG+AGG + chr7_1:1068554-1068573 Msa1003990:CDS 40.0%
TATGGGGCATACAATTCAGA+AGG + chr7_1:1068737-1068756 Msa1003990:CDS 40.0%
GGCATACAATTCAGAAGGAA+GGG + chr7_1:1068742-1068761 Msa1003990:CDS 40.0%
TCTGCGAAAATAAGGCGATT+AGG + chr7_1:1068775-1068794 Msa1003990:CDS 40.0%
ATCGATGTTGGTATGTCGAA+AGG + chr7_1:1068798-1068817 Msa1003990:CDS 40.0%
!!! GTTTTGGAGATTGACCGTTA+TGG + chr7_1:1068843-1068862 Msa1003990:CDS 40.0%
TTTGGAGATTGACCGTTATG+GGG + chr7_1:1068845-1068864 Msa1003990:CDS 40.0%
TCAATATCCTCACCCCATAA+CGG - chr7_1:1068860-1068879 None:intergenic 40.0%
AAGTCAAGGCTTAGGCTTAA+TGG + chr7_1:1068991-1069010 Msa1003990:exon 40.0%
GGTTTCTCATTCTTGTGCTT+TGG + chr7_1:1069161-1069180 Msa1003990:three_prime_UTR 40.0%
!! TTCTTGTGCTTTGGAATTGG+AGG + chr7_1:1069170-1069189 Msa1003990:three_prime_UTR 40.0%
!! GCTTTGGAATTGGAGGTATT+TGG + chr7_1:1069177-1069196 Msa1003990:intron 40.0%
ATATACTAGGAAGGAAAGGG+GGG + chr7_1:1069605-1069624 Msa1003990:intron 40.0%
AAGTTGTTGAACCACATAGC+AGG + chr7_1:1069772-1069791 Msa1003990:intron 40.0%
AAGAAACCTAACCTGCTATG+TGG - chr7_1:1069786-1069805 None:intergenic 40.0%
! TGGAGAGAATACCTCTGTTT+TGG + chr7_1:1069842-1069861 Msa1003990:intron 40.0%
! AACTAGCTTGTCCAAAACAG+AGG - chr7_1:1069856-1069875 None:intergenic 40.0%
GCTCCTACACCTATGAAAAA+AGG - chr7_1:1069879-1069898 None:intergenic 40.0%
AAATAAGCCGGAGGATTTCT+AGG + chr7_1:1069949-1069968 Msa1003990:intron 40.0%
AAGTTAGGAGATGAAGTAGC+AGG + chr7_1:1070006-1070025 Msa1003990:intron 40.0%
ACCGTCGACATTAGATTCTT+CGG + chr7_1:1070135-1070154 Msa1003990:intron 40.0%
TCCGAAGAATCTAATGTCGA+CGG - chr7_1:1070139-1070158 None:intergenic 40.0%
GAAGATCCATAGATCCAACA+AGG + chr7_1:1070728-1070747 Msa1003990:intron 40.0%
ATCAACCCTTGTTGGATCTA+TGG - chr7_1:1070737-1070756 None:intergenic 40.0%
TGATGAGACGTTGTTGAAAG+AGG + chr7_1:1070753-1070772 Msa1003990:intron 40.0%
GGTAAATCCCAATTGTCCTA+TGG + chr7_1:1070795-1070814 Msa1003990:intron 40.0%
TCACTGTATTCTATGTGGAG+GGG - chr7_1:1070882-1070901 None:intergenic 40.0%
GTCACTGTATTCTATGTGGA+GGG - chr7_1:1070883-1070902 None:intergenic 40.0%
CTTGGTCACTGTATTCTATG+TGG - chr7_1:1070887-1070906 None:intergenic 40.0%
AAGACACTTGTGCTATACTC+AGG + chr7_1:1070950-1070969 Msa1003990:intron 40.0%
ATATGCTCTCTCAACTTTGC+TGG + chr7_1:1071209-1071228 Msa1003990:three_prime_UTR 40.0%
TATGCTCTCTCAACTTTGCT+GGG + chr7_1:1071210-1071229 Msa1003990:three_prime_UTR 40.0%
!! AATGTGAATGTGGTTGATGG+TGG + chr7_1:1071249-1071268 Msa1003990:three_prime_UTR 40.0%
!! TCATTACAAGCACTGAGTCT+TGG + chr7_1:1071351-1071370 Msa1003990:three_prime_UTR 40.0%
!!! TTTTGATTTCATCGCCTCCG+CGG - chr7_1:1067940-1067959 None:intergenic 45.0%
GATCTCGTGGTTACCATTCA+TGG - chr7_1:1068023-1068042 None:intergenic 45.0%
!! TTCATGATGGGTTTAGGGCT+AGG + chr7_1:1068406-1068425 Msa1003990:CDS 45.0%
!! TCATGATGGGTTTAGGGCTA+GGG + chr7_1:1068407-1068426 Msa1003990:CDS 45.0%
! CATGTTTTGTCCACGATTCC+TGG + chr7_1:1068699-1068718 Msa1003990:CDS 45.0%
GGGCATACAATTCAGAAGGA+AGG + chr7_1:1068741-1068760 Msa1003990:CDS 45.0%
AAGGCGATTAGGATCGATGT+TGG + chr7_1:1068786-1068805 Msa1003990:CDS 45.0%
GTTGGTATGTCGAAAGGATG+CGG + chr7_1:1068804-1068823 Msa1003990:CDS 45.0%
GGAAAATGTGGATGTTGGGA+AGG + chr7_1:1068911-1068930 Msa1003990:CDS 45.0%
AAATGTGGATGTTGGGAAGG+TGG + chr7_1:1068914-1068933 Msa1003990:CDS 45.0%
ATGTTGGGAAGGTGGAAGAA+GGG + chr7_1:1068922-1068941 Msa1003990:CDS 45.0%
! TAGAGTTTGTTTGGCCAAGG+CGG + chr7_1:1069463-1069482 Msa1003990:intron 45.0%
GTTGAACCACATAGCAGGTT+AGG + chr7_1:1069777-1069796 Msa1003990:intron 45.0%
CACCAAACCTAGAAATCCTC+CGG - chr7_1:1069959-1069978 None:intergenic 45.0%
! AGATGAAGTAGCAGGTTGAG+AGG + chr7_1:1070014-1070033 Msa1003990:intron 45.0%
AACGTCTCATCAACCCTTGT+TGG - chr7_1:1070745-1070764 None:intergenic 45.0%
TGTATTCTATGTGGAGGGGT+AGG - chr7_1:1070878-1070897 None:intergenic 45.0%
GGTCACTGTATTCTATGTGG+AGG - chr7_1:1070884-1070903 None:intergenic 45.0%
CAAGCAGGCAATGGAATTGA+GGG - chr7_1:1071147-1071166 None:intergenic 45.0%
TCAAGCAGGCAATGGAATTG+AGG - chr7_1:1071148-1071167 None:intergenic 45.0%
CCAACATATCAAGCAGGCAA+TGG - chr7_1:1071156-1071175 None:intergenic 45.0%
CCATTGCCTGCTTGATATGT+TGG + chr7_1:1071153-1071172 Msa1003990:intron 45.0%
TTGCTGCCAACATATCAAGC+AGG - chr7_1:1071162-1071181 None:intergenic 45.0%
TGATATGTTGGCAGCAACTG+AGG + chr7_1:1071165-1071184 Msa1003990:intron 45.0%
!! TTTGTCGACTTCTCCGTCAG+CGG + chr7_1:1067710-1067729 Msa1003990:CDS 50.0%
! CGATTAAGCGTGACGGAGAA+GGG - chr7_1:1067790-1067809 None:intergenic 50.0%
AGCGATGCTGAGAGCTTCTT+TGG - chr7_1:1067846-1067865 None:intergenic 50.0%
AAAGAAGCTCTCAGCATCGC+TGG + chr7_1:1067845-1067864 Msa1003990:CDS 50.0%
! GCTGGATTAATCGACTCCTC+CGG + chr7_1:1067863-1067882 Msa1003990:CDS 50.0%
GACTCCTCCGGTAATTACAC+AGG + chr7_1:1067875-1067894 Msa1003990:CDS 50.0%
TCCTCCGGTAATTACACAGG+CGG + chr7_1:1067878-1067897 Msa1003990:CDS 50.0%
AGACCCGCCTGTGTAATTAC+CGG - chr7_1:1067885-1067904 None:intergenic 50.0%
AAACGCCAAGCTGCGATTCA+TGG + chr7_1:1067983-1068002 Msa1003990:CDS 50.0%
TACCACCATGAATCGCAGCT+TGG - chr7_1:1067991-1068010 None:intergenic 50.0%
CTTCAGCGTTCATGATCTCG+TGG - chr7_1:1068036-1068055 None:intergenic 50.0%
CACGAGATCATGAACGCTGA+AGG + chr7_1:1068034-1068053 Msa1003990:CDS 50.0%
AATGTTCACGTGGCGTTTCG+TGG + chr7_1:1068369-1068388 Msa1003990:CDS 50.0%
GACAATAAGGCGGCGAAAAC+CGG - chr7_1:1068611-1068630 None:intergenic 50.0%
!! GGTTTTCGCCGCCTTATTGT+CGG + chr7_1:1068610-1068629 Msa1003990:CDS 50.0%
!! GTTTTCGCCGCCTTATTGTC+GGG + chr7_1:1068611-1068630 Msa1003990:CDS 50.0%
!! TTTTCGCCGCCTTATTGTCG+GGG + chr7_1:1068612-1068631 Msa1003990:CDS 50.0%
TTCCTTCCCCGACAATAAGG+CGG - chr7_1:1068621-1068640 None:intergenic 50.0%
GCATTCCTTCCCCGACAATA+AGG - chr7_1:1068624-1068643 None:intergenic 50.0%
GGGGAAGGAATGCACTTGTT+TGG + chr7_1:1068631-1068650 Msa1003990:CDS 50.0%
CCTCTTAACACCAGGAATCG+TGG - chr7_1:1068712-1068731 None:intergenic 50.0%
! CCACGATTCCTGGTGTTAAG+AGG + chr7_1:1068709-1068728 Msa1003990:CDS 50.0%
!! TGGTGGTTTGCCTGAGGTTT+TGG + chr7_1:1068827-1068846 Msa1003990:CDS 50.0%
CGGTCAATCTCCAAAACCTC+AGG - chr7_1:1068840-1068859 None:intergenic 50.0%
AGATTGACCGTTATGGGGTG+AGG + chr7_1:1068850-1068869 Msa1003990:CDS 50.0%
GATGTTGGGAAGGTGGAAGA+AGG + chr7_1:1068921-1068940 Msa1003990:CDS 50.0%
AGATGGTAGACCTAGGCAAG+TGG + chr7_1:1068968-1068987 Msa1003990:CDS 50.0%
ACCTAGGCAAGTGGAAGTCA+AGG + chr7_1:1068977-1068996 Msa1003990:CDS 50.0%
GCAAGTGGAAGTCAAGGCTT+AGG + chr7_1:1068983-1069002 Msa1003990:CDS 50.0%
! AGAGTTTGTTTGGCCAAGGC+GGG + chr7_1:1069464-1069483 Msa1003990:intron 50.0%
AAGCACATCGCAGGCTCATT+GGG - chr7_1:1069814-1069833 None:intergenic 50.0%
ATGATCCTGAAGCACATCGC+AGG - chr7_1:1069823-1069842 None:intergenic 50.0%
TGCGATGTGCTTCAGGATCA+TGG + chr7_1:1069822-1069841 Msa1003990:intron 50.0%
! AGCCGGAGGATTTCTAGGTT+TGG + chr7_1:1069954-1069973 Msa1003990:intron 50.0%
! CGGAGGATTTCTAGGTTTGG+TGG + chr7_1:1069957-1069976 Msa1003990:intron 50.0%
! GCAGGTTGAGAGGAGAAAGT+TGG + chr7_1:1070024-1070043 Msa1003990:intron 50.0%
GGCTTATCAAGCTTAGCGTC+TGG + chr7_1:1070774-1070793 Msa1003990:intron 50.0%
!! TGAATGTGGTTGATGGTGGC+TGG + chr7_1:1071253-1071272 Msa1003990:three_prime_UTR 50.0%
! CTTAGGCCACCATATCGACT+AGG - chr7_1:1071292-1071311 None:intergenic 50.0%
CTAGTCGATATGGTGGCCTA+AGG + chr7_1:1071290-1071309 Msa1003990:three_prime_UTR 50.0%
TCAAATCACGGAGCTGCCTT+AGG - chr7_1:1071309-1071328 None:intergenic 50.0%
!! ATTGGCGGTGGTGATGATGG+CGG - chr7_1:1067755-1067774 None:intergenic 55.0%
! GCGATTAAGCGTGACGGAGA+AGG - chr7_1:1067791-1067810 None:intergenic 55.0%
CCGATGGCGATTAAGCGTGA+CGG - chr7_1:1067797-1067816 None:intergenic 55.0%
CCGTCACGCTTAATCGCCAT+CGG + chr7_1:1067794-1067813 Msa1003990:CDS 55.0%
CCTCCGGTAATTACACAGGC+GGG + chr7_1:1067879-1067898 Msa1003990:CDS 55.0%
TCTGCCACCGTCGTTCAAGT+CGG + chr7_1:1067902-1067921 Msa1003990:CDS 55.0%
!! GACATCGCCGACTTGAACGA+CGG - chr7_1:1067912-1067931 None:intergenic 55.0%
ACGTGGCGTTTCGTGGTGTT+AGG + chr7_1:1068376-1068395 Msa1003990:CDS 55.0%
! CGTGGCGTTTCGTGGTGTTA+GGG + chr7_1:1068377-1068396 Msa1003990:CDS 55.0%
! TGGGTTTAGGGCTAGGGTTG+CGG + chr7_1:1068413-1068432 Msa1003990:CDS 55.0%
!! GTTGCGGCTTTAAGGCCGAA+TGG + chr7_1:1068429-1068448 Msa1003990:CDS 55.0%
GGTATGTCGAAAGGATGCGG+TGG + chr7_1:1068807-1068826 Msa1003990:CDS 55.0%
ATGTCGAAAGGATGCGGTGG+TGG + chr7_1:1068810-1068829 Msa1003990:CDS 55.0%
GGGAAGGTGGAAGAAGGGTT+TGG + chr7_1:1068927-1068946 Msa1003990:CDS 55.0%
GCCTTGACTTCCACTTGCCT+AGG - chr7_1:1068981-1069000 None:intergenic 55.0%
GAAGCACATCGCAGGCTCAT+TGG - chr7_1:1069815-1069834 None:intergenic 55.0%
ATGAGCCTGCGATGTGCTTC+AGG + chr7_1:1069815-1069834 Msa1003990:intron 55.0%
GGGTAGGCACCACTAGCAAA+AGG - chr7_1:1070862-1070881 None:intergenic 55.0%
!! ATGTGGTTGATGGTGGCTGG+CGG + chr7_1:1071256-1071275 Msa1003990:three_prime_UTR 55.0%
! CATATCGACTAGGCCACCTG+CGG - chr7_1:1071282-1071301 None:intergenic 55.0%
AGGTGGCCTAGTCGATATGG+TGG + chr7_1:1071283-1071302 Msa1003990:three_prime_UTR 55.0%
AGGCAGCTCCGTGATTTGAG+AGG + chr7_1:1071310-1071329 Msa1003990:three_prime_UTR 55.0%
!! GTGGTGATGATGGCGGAGGT+GGG - chr7_1:1067748-1067767 None:intergenic 60.0%
! GGGATTGGCGGTGGTGATGA+TGG - chr7_1:1067758-1067777 None:intergenic 60.0%
GAAGGGAGACGAGTGGGGAT+TGG - chr7_1:1067773-1067792 None:intergenic 60.0%
ACGGAGAAGGGAGACGAGTG+GGG - chr7_1:1067778-1067797 None:intergenic 60.0%
GACGGAGAAGGGAGACGAGT+GGG - chr7_1:1067779-1067798 None:intergenic 60.0%
TGACGGAGAAGGGAGACGAG+TGG - chr7_1:1067780-1067799 None:intergenic 60.0%
ATCGCCATCGGCGACCTTCA+TGG + chr7_1:1067806-1067825 Msa1003990:CDS 60.0%
GTCACCATGAAGGTCGCCGA+TGG - chr7_1:1067813-1067832 None:intergenic 60.0%
CCCGCCTGTGTAATTACCGG+AGG - chr7_1:1067882-1067901 None:intergenic 60.0%
!! ATCGCCGACTTGAACGACGG+TGG - chr7_1:1067909-1067928 None:intergenic 60.0%
CGCCAAGCTGCGATTCATGG+TGG + chr7_1:1067986-1068005 Msa1003990:CDS 60.0%
GGGCTAGGGTTGCGGCTTTA+AGG + chr7_1:1068421-1068440 Msa1003990:CDS 60.0%
! ATGCGGTGGTGGTTTGCCTG+AGG + chr7_1:1068821-1068840 Msa1003990:CDS 60.0%
CGCAGGTGGCCTAGTCGATA+TGG + chr7_1:1071280-1071299 Msa1003990:three_prime_UTR 60.0%
! GTCGACTTCTCCGTCAGCGG+CGG + chr7_1:1067713-1067732 Msa1003990:CDS 65.0%
! ATGGCGGAGGTGGGAGGAAG+AGG - chr7_1:1067739-1067758 None:intergenic 65.0%
!! GTGATGATGGCGGAGGTGGG+AGG - chr7_1:1067745-1067764 None:intergenic 65.0%
!! GGTGGTGATGATGGCGGAGG+TGG - chr7_1:1067749-1067768 None:intergenic 65.0%
! AGACGAGTGGGGATTGGCGG+TGG - chr7_1:1067767-1067786 None:intergenic 65.0%
GGGAGACGAGTGGGGATTGG+CGG - chr7_1:1067770-1067789 None:intergenic 65.0%
TTTCATCGCCTCCGCGGTCG+AGG - chr7_1:1067934-1067953 None:intergenic 65.0%
! CGCCGCCTTATTGTCGGGGA+AGG + chr7_1:1068616-1068635 Msa1003990:CDS 65.0%
GAGGAAGAGGCCGCCGCTGA+CGG - chr7_1:1067726-1067745 None:intergenic 70.0%
!! GGCGGTGGTGATGATGGCGG+AGG - chr7_1:1067752-1067771 None:intergenic 70.0%
GTCGGCGATGTCCTCGACCG+CGG + chr7_1:1067920-1067939 Msa1003990:CDS 70.0%
GGCGATGTCCTCGACCGCGG+AGG + chr7_1:1067923-1067942 Msa1003990:CDS 75.0%
!! TGATGGTGGCTGGCGGCCGC+AGG + chr7_1:1071263-1071282 Msa1003990:three_prime_UTR 75.0%
! TGGTGGCTGGCGGCCGCAGG+TGG + chr7_1:1071266-1071285 Msa1003990:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 1067509 1071375 1067509 ID=Msa1003990;Name=Msa1003990
chr7_1 mRNA 1067509 1071375 1067509 ID=Msa1003990-mRNA-1;Parent=Msa1003990;Name=Msa1003990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=126|1|1|1|0.5|0.33|3|357|394
chr7_1 exon 1067509 1068055 1067509 ID=Msa1003990-mRNA-1:exon:445;Parent=Msa1003990-mRNA-1
chr7_1 exon 1068241 1069191 1068241 ID=Msa1003990-mRNA-1:exon:446;Parent=Msa1003990-mRNA-1
chr7_1 exon 1071206 1071375 1071206 ID=Msa1003990-mRNA-1:exon:447;Parent=Msa1003990-mRNA-1
chr7_1 five_prime_UTR 1067509 1067634 1067509 ID=Msa1003990-mRNA-1:five_prime_utr;Parent=Msa1003990-mRNA-1
chr7_1 CDS 1067635 1068055 1067635 ID=Msa1003990-mRNA-1:cds;Parent=Msa1003990-mRNA-1
chr7_1 CDS 1068241 1069004 1068241 ID=Msa1003990-mRNA-1:cds;Parent=Msa1003990-mRNA-1
chr7_1 three_prime_UTR 1069005 1069191 1069005 ID=Msa1003990-mRNA-1:three_prime_utr;Parent=Msa1003990-mRNA-1
chr7_1 three_prime_UTR 1071206 1071375 1071206 ID=Msa1003990-mRNA-1:three_prime_utr;Parent=Msa1003990-mRNA-1
Gene Sequence

>Msa1003990

ATGGAAATCGAAAAACAAAACTCAAACACATTCTGCGACCAAATTCCCAATCTCCTCTCTTCATTCATCGACACATTTGTCGACTTCTCCGTCAGCGGCGGCCTCTTCCTCCCACCTCCGCCATCATCACCACCGCCAATCCCCACTCGTCTCCCTTCTCCGTCACGCTTAATCGCCATCGGCGACCTTCATGGTGACCTCAAGAAATCCAAAGAAGCTCTCAGCATCGCTGGATTAATCGACTCCTCCGGTAATTACACAGGCGGGTCTGCCACCGTCGTTCAAGTCGGCGATGTCCTCGACCGCGGAGGCGATGAAATCAAAATCCTCTACTTATTGGAAAAGCTCAAACGCCAAGCTGCGATTCATGGTGGTAATTTCATCACCATGAATGGTAACCACGAGATCATGAACGCTGAAGGTGATTTCCGTTTCGCTACAAAAAACGGTGTTGAAGAATTCAAAGTTTGGTTAGAATGGTTTCGTCAAGGTAACAAAATGAAAAATCTATGTAAAGGTTTGGAAGAAACGGTTGTAGATCCGTTAGAAAATGTTCACGTGGCGTTTCGTGGTGTTAGGGAAGAGTTTCATGATGGGTTTAGGGCTAGGGTTGCGGCTTTAAGGCCGAATGGACCGATTTCAAAAAGGTTCTTTACACAAAATGTTACTGTTTTGGTAGTTGGTGATTCAATTTTTGTTCATGGTGGTTTGTTGGAAGAACATGTTGATTATGGGTTGGAGAAGATTAATGGTGAGGTTAGTGATTGGTATAAGGGTTTGTTTGGTAACCGGTTTTCGCCGCCTTATTGTCGGGGAAGGAATGCACTTGTTTGGCTTAGAAAATTTTCAGATGGGAGTTGTGATTGTTCGAGTCTTGAGCATGTTTTGTCCACGATTCCTGGTGTTAAGAGGATGATTATGGGGCATACAATTCAGAAGGAAGGGATTAATGGTGTCTGCGAAAATAAGGCGATTAGGATCGATGTTGGTATGTCGAAAGGATGCGGTGGTGGTTTGCCTGAGGTTTTGGAGATTGACCGTTATGGGGTGAGGATATTGACATCAAATCCTTTATATAATCAGATGGATAAGGAAAATGTGGATGTTGGGAAGGTGGAAGAAGGGTTTGGATTGTTGCTTAATAATCAAGATGGTAGACCTAGGCAAGTGGAAGTCAAGGCTTAG
Protein sequence

>Msa1003990

MEIEKQNSNTFCDQIPNLLSSFIDTFVDFSVSGGLFLPPPPSSPPPIPTRLPSPSRLIAIGDLHGDLKKSKEALSIAGLIDSSGNYTGGSATVVQVGDVLDRGGDEIKILYLLEKLKRQAAIHGGNFITMNGNHEIMNAEGDFRFATKNGVEEFKVWLEWFRQGNKMKNLCKGLEETVVDPLENVHVAFRGVREEFHDGFRARVAALRPNGPISKRFFTQNVTVLVVGDSIFVHGGLLEEHVDYGLEKINGEVSDWYKGLFGNRFSPPYCRGRNALVWLRKFSDGSCDCSSLEHVLSTIPGVKRMIMGHTIQKEGINGVCENKAIRIDVGMSKGCGGGLPEVLEIDRYGVRILTSNPLYNQMDKENVDVGKVEEGFGLLLNNQDGRPRQVEVKA*