AlfalfaGEDB | Msa0295070

M. sativa cultivar zhongmu-4 / Msa0295070

KEGG: -
GO: -
PFAM: PF12043.11

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295070	XP_003597414.1	93.976	166	1	1	1	166	759	915	3.31e-104	328

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295070	G7IRZ2	93.976	166	1	1	1	166	759	915	1.58e-104	328

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0295070	0.833924	4.033460e-56	-8.615850e-47
Msa0031340	Msa0295070	0.800601	1.334975e-48	-8.615850e-47
Msa0089630	Msa0295070	0.801486	8.803356e-49	-8.615850e-47
Msa0094850	Msa0295070	0.801808	7.561406e-49	-8.615850e-47
Msa0108160	Msa0295070	0.802322	5.927947e-49	-8.615850e-47
Msa0110970	Msa0295070	0.828353	9.424408e-55	-8.615850e-47
Msa0140570	Msa0295070	0.802013	6.861683e-49	-8.615850e-47
Msa0140780	Msa0295070	0.846729	1.808383e-59	-8.615850e-47
Msa0157290	Msa0295070	0.833937	4.002763e-56	-8.615850e-47
Msa0171290	Msa0295070	0.815303	9.906946e-52	-8.615850e-47
Msa0189290	Msa0295070	0.808895	2.473400e-50	-8.615850e-47
Msa0200260	Msa0295070	0.826943	2.055387e-54	-8.615850e-47
Msa0223690	Msa0295070	0.800319	1.523559e-48	-8.615850e-47
Msa0231650	Msa0295070	0.810903	9.144770e-51	-8.615850e-47
Msa0240110	Msa0295070	0.809787	1.592222e-50	-8.615850e-47
Msa0240150	Msa0295070	0.818951	1.499075e-52	-8.615850e-47
Msa0243100	Msa0295070	0.835574	1.550301e-56	-8.615850e-47
Msa0261340	Msa0295070	0.808558	2.919112e-50	-8.615850e-47
Msa0283450	Msa0295070	0.805585	1.243487e-49	-8.615850e-47
Msa0283520	Msa0295070	0.802569	5.271193e-49	-8.615850e-47
Msa0287650	Msa0295070	0.834536	2.831594e-56	-8.615850e-47
Msa0295070	Msa0297740	0.821165	4.667927e-53	-8.615850e-47
Msa0295070	Msa0332000	0.808989	2.361526e-50	-8.615850e-47
Msa0295070	Msa0334350	0.811344	7.338230e-51	-8.615850e-47
Msa0295070	Msa0340090	0.819677	1.024208e-52	-8.615850e-47
Msa0295070	Msa0349080	0.813510	2.468320e-51	-8.615850e-47
Msa0295070	Msa0366240	0.815082	1.109467e-51	-8.615850e-47
Msa0295070	Msa0387510	0.818154	2.272468e-52	-8.615850e-47
Msa0295070	Msa0389340	0.809479	1.854555e-50	-8.615850e-47
Msa0295070	Msa0407920	0.805480	1.308391e-49	-8.615850e-47
Msa0295070	Msa0410650	0.821308	4.327347e-53	-8.615850e-47
Msa0295070	Msa0411190	0.804974	1.669278e-49	-8.615850e-47
Msa0295070	Msa0417270	0.804816	1.801020e-49	-8.615850e-47
Msa0295070	Msa0422850	0.800308	1.531656e-48	-8.615850e-47
Msa0295070	Msa0422930	0.800917	1.150914e-48	-8.615850e-47
Msa0295070	Msa0469030	0.809519	1.818301e-50	-8.615850e-47
Msa0295070	Msa0480980	0.813043	3.124848e-51	-8.615850e-47
Msa0295070	Msa0487420	0.802305	5.974430e-49	-8.615850e-47
Msa0295070	Msa0491040	0.806277	8.892751e-50	-8.615850e-47
Msa0295070	Msa0495320	0.805036	1.620468e-49	-8.615850e-47
Msa0295070	Msa0503580	0.802247	6.141456e-49	-8.615850e-47
Msa0295070	Msa0507680	0.833160	6.254050e-56	-8.615850e-47
Msa0295070	Msa0509610	0.818272	2.137680e-52	-8.615850e-47
Msa0295070	Msa0510980	0.819419	1.172744e-52	-8.615850e-47
Msa0295070	Msa0516320	0.803232	3.846564e-49	-8.615850e-47
Msa0295070	Msa0524190	0.827826	1.262189e-54	-8.615850e-47
Msa0295070	Msa0546680	0.825483	4.574703e-54	-8.615850e-47
Msa0295070	Msa0566030	0.805712	1.169497e-49	-8.615850e-47
Msa0295070	Msa0574890	0.805256	1.457292e-49	-8.615850e-47
Msa0295070	Msa0581760	0.808816	2.572017e-50	-8.615850e-47
Msa0295070	Msa0657970	0.801912	7.197208e-49	-8.615850e-47
Msa0295070	Msa0708520	0.807748	4.344067e-50	-8.615850e-47
Msa0295070	Msa0710800	0.800044	1.733804e-48	-8.615850e-47
Msa0295070	Msa0744000	0.805315	1.416340e-49	-8.615850e-47
Msa0295070	Msa0801760	0.805203	1.495107e-49	-8.615850e-47
Msa0295070	Msa0803890	0.803697	3.080213e-49	-8.615850e-47
Msa0295070	Msa0824960	0.806164	9.395988e-50	-8.615850e-47
Msa0295070	Msa0861870	0.803339	3.654492e-49	-8.615850e-47
Msa0295070	Msa0866270	0.801753	7.760037e-49	-8.615850e-47
Msa0295070	Msa0871270	0.802303	5.980264e-49	-8.615850e-47
Msa0295070	Msa0880140	0.830502	2.832811e-55	-8.615850e-47
Msa0295070	Msa0896970	0.806020	1.007385e-49	-8.615850e-47
Msa0295070	Msa1023400	0.814223	1.718936e-51	-8.615850e-47
Msa0295070	Msa1083150	0.805639	1.211462e-49	-8.615850e-47
Msa0295070	Msa1085200	0.822568	2.209799e-53	-8.615850e-47
Msa0295070	Msa1139810	0.810224	1.282069e-50	-8.615850e-47
Msa0295070	Msa1147280	0.802306	5.971973e-49	-8.615850e-47
Msa0295070	Msa1151910	0.819956	8.843113e-53	-8.615850e-47
Msa0295070	Msa1222970	0.817629	2.986788e-52	-8.615850e-47
Msa0295070	Msa1233910	0.800541	1.373506e-48	-8.615850e-47
Msa0295070	Msa1242230	0.807203	5.670206e-50	-8.615850e-47
Msa0295070	Msa1242240	0.802768	4.797059e-49	-8.615850e-47
Msa0295070	Msa1264020	0.805232	1.474051e-49	-8.615850e-47
Msa0295070	Msa1267220	0.810306	1.230741e-50	-8.615850e-47
Msa0295070	Msa1270610	0.812981	3.225388e-51	-8.615850e-47
Msa0295070	Msa1271280	0.801338	9.439379e-49	-8.615850e-47
Msa0295070	Msa1271990	0.808554	2.925033e-50	-8.615850e-47
Msa0295070	Msa1283840	0.801327	9.488101e-49	-8.615850e-47
Msa0295070	Msa1284260	0.810189	1.304652e-50	-8.615850e-47
Msa0295070	Msa1309790	0.818470	1.927315e-52	-8.615850e-47
Msa0295070	Msa1322860	0.817154	3.820213e-52	-8.615850e-47
Msa0295070	Msa1327050	0.826312	2.906902e-54	-8.615850e-47
Msa0295070	Msa1346370	0.808400	3.155641e-50	-8.615850e-47
Msa0295070	Msa1365060	0.828818	7.278205e-55	-8.615850e-47
Msa0295070	Msa1367080	0.806469	8.103596e-50	-8.615850e-47
Msa0295070	Msa1367370	0.822745	2.010061e-53	-8.615850e-47
Msa0295070	Msa1374550	0.814012	1.913126e-51	-8.615850e-47
Msa0295070	Msa1384350	0.806785	6.950299e-50	-8.615850e-47
Msa0295070	Msa1398340	0.800480	1.413135e-48	-8.615850e-47
Msa0295070	Msa1409870	0.802694	4.968117e-49	-8.615850e-47
Msa0295070	Msa1417870	0.801088	1.061978e-48	-8.615850e-47
Msa0295070	Msa1431430	0.808779	2.618718e-50	-8.615850e-47
Msa0295070	Msa1435890	0.803867	2.840210e-49	-8.615850e-47
Msa0295070	Msa1438250	0.805365	1.382517e-49	-8.615850e-47
Msa0295070	Msa1443110	0.830496	2.842527e-55	-8.615850e-47
Msa0295070	Msa1457910	0.808952	2.405110e-50	-8.615850e-47
Msa0295070	Msa1460020	0.803302	3.719048e-49	-8.615850e-47
Msa0295070	Msa1461300	0.803778	2.963706e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295070	MtrunA17_Chr2g0328721	93.976	166	1	1	1	166	759	915	3.05e-108	328
Msa0295070	MtrunA17_Chr4g0032351	69.822	169	46	3	1	166	710	876	2.69e-73	235
Msa0295070	MtrunA17_Chr4g0008861	41.916	167	87	5	1	166	770	927	1.66e-31	119
Msa0295070	MtrunA17_Chr7g0240931	36.905	168	74	6	1	166	701	838	7.90e-27	105
Msa0295070	MtrunA17_Chr1g0186181	35.714	126	59	4	1	115	484	598	5.96e-18	80.1
Msa0295070	MtrunA17_Chr8g0386851	38.710	186	84	8	1	166	554	729	6.18e-15	71.2
Msa0295070	MtrunA17_Chr5g0397401	38.043	184	91	7	1	166	443	621	3.55e-14	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295070	AT2G29510.1	45.251	179	76	6	1	166	670	839	8.72e-40	143
Msa0295070	AT5G59020.1	44.886	176	73	7	1	166	619	780	4.88e-36	132
Msa0295070	AT5G01030.3	37.349	166	65	4	1	166	618	744	8.41e-28	108
Msa0295070	AT5G01030.1	37.349	166	65	4	1	166	618	744	8.41e-28	108
Msa0295070	AT5G01030.2	37.349	166	65	4	1	166	618	744	8.41e-28	108
Msa0295070	AT2G37930.3	37.500	168	76	5	1	166	431	571	9.04e-26	102
Msa0295070	AT2G37930.4	37.500	168	76	5	1	166	431	571	9.04e-26	102
Msa0295070	AT2G37930.1	37.500	168	76	5	1	166	403	543	1.02e-25	102
Msa0295070	AT1G04490.9	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.5	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.6	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.3	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.7	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.2	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.1	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT1G04490.8	42.342	111	47	4	1	110	294	388	5.49e-20	85.9
Msa0295070	AT2G33360.2	39.286	112	58	4	1	110	327	430	4.93e-17	77.8
Msa0295070	AT2G33360.1	39.286	112	58	4	1	110	482	585	5.27e-17	77.8
Msa0295070	AT2G37930.2	65.957	47	14	1	1	45	431	477	3.13e-16	75.5
Msa0295070	AT1G63520.1	29.310	174	92	7	1	166	378	528	4.53e-15	72.0
Msa0295070	AT1G04490.4	68.293	41	12	1	1	41	294	333	2.50e-13	67.0
Msa0295070	AT4G11450.1	42.105	114	56	4	1	110	516	623	2.16e-12	64.3

Find 72 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCAATTGTCAACTCCCTTT+TGG	0.160961	2_3:+47287519	None:intergenic
ACTCTAATTACATGATTTAT+TGG	0.218147	2_3:+47287632	None:intergenic
AATATACTCCAGGTTCAAAA+TGG	0.220776	2_3:+47288119	None:intergenic
TGAGTTCCATATGTAAATTT+TGG	0.234628	2_3:-47287500	Msa0295070:three_prime_UTR
CAAATATTTGCTGCACTAAA+TGG	0.238536	2_3:+47287827	None:intergenic
AAACTCCCTTACGAACTTTC+TGG	0.316083	2_3:-47288028	Msa0295070:CDS
TGTACCAAGGCATATTAATC+TGG	0.338212	2_3:-47287267	Msa0295070:three_prime_UTR
ATTCGTACACCATTGATTTA+CGG	0.340316	2_3:-47287392	Msa0295070:three_prime_UTR
TGATTTACGGAAAGTACATT+TGG	0.353358	2_3:-47287379	Msa0295070:three_prime_UTR
GGATAGGCAGCGTAACTTGC+AGG	0.364076	2_3:+47287914	None:intergenic
CGCCTGATTCTTTCCCTCGA+TGG	0.367460	2_3:+47287994	None:intergenic
GGAGTATATTCAGTAGCTTT+TGG	0.369009	2_3:-47288106	Msa0295070:CDS
CTTATTGAGCGCTGGAAAAC+TGG	0.372139	2_3:-47288438	Msa0295070:CDS
GATTTACCAAAATTTACATA+TGG	0.390659	2_3:+47287494	None:intergenic
TCTGCACGTTTGATTATTGT+TGG	0.392375	2_3:+47288362	None:intergenic
GTAAGTGACCACATTCAAAA+TGG	0.402371	2_3:-47287594	Msa0295070:three_prime_UTR
TGATTGCGGAGGTTGGGATT+TGG	0.414627	2_3:-47288406	Msa0295070:CDS
CTCCATCGAGGGAAAGAATC+AGG	0.416905	2_3:-47287996	Msa0295070:CDS
ACGTACTTTCAGTTTATGAT+TGG	0.427028	2_3:-47287439	Msa0295070:three_prime_UTR
AAAATTTAGACCCTTCCAAC+TGG	0.431439	2_3:+47287881	None:intergenic
GAATCAGGCGGAATCTCTAT+TGG	0.444298	2_3:-47287981	Msa0295070:CDS
TACTAAGCCTGATTTCCAAA+AGG	0.453266	2_3:-47287534	Msa0295070:three_prime_UTR
GGTTCAAACAGGTGAACTAA+AGG	0.464778	2_3:-47287960	Msa0295070:CDS
ATCCACCATTGCAATGCAAA+TGG	0.465100	2_3:+47288054	None:intergenic
GAATCTCTATTGGTTCAAAC+AGG	0.465357	2_3:-47287971	Msa0295070:CDS
GATCCTGTGATTGCGGAGGT+TGG	0.473723	2_3:-47288413	Msa0295070:CDS
ATCCTGTGATTGCGGAGGTT+GGG	0.475937	2_3:-47288412	Msa0295070:CDS
ACCCTTCCAACTGGAGAGAC+AGG	0.483381	2_3:+47287890	None:intergenic
CTCCTGTCTCTCCAGTTGGA+AGG	0.483766	2_3:-47287892	Msa0295070:CDS
TCCTGTCTCTCCAGTTGGAA+GGG	0.491356	2_3:-47287891	Msa0295070:CDS
ATGTACTTTCCGTAAATCAA+TGG	0.497080	2_3:+47287383	None:intergenic
TATCCTCCTGTCTCTCCAGT+TGG	0.497408	2_3:-47287896	Msa0295070:CDS
TTGAACTCAACTCTAAGATT+CGG	0.500482	2_3:+47287463	None:intergenic
CTCCATTTGCATTGCAATGG+TGG	0.500869	2_3:-47288056	Msa0295070:CDS
TTTCCCAGATTAATATGCCT+TGG	0.502109	2_3:+47287263	None:intergenic
GATCGAGTTATGAGCTTGCA+AGG	0.503551	2_3:+47287755	None:intergenic
CTTGATCCAGAAAGTTCGTA+AGG	0.503613	2_3:+47288022	None:intergenic
CTTCGTCGCTTATTGAGCGC+TGG	0.506867	2_3:-47288446	Msa0295070:CDS
GTTCAAACAGGTGAACTAAA+GGG	0.512189	2_3:-47287959	Msa0295070:CDS
ACTAAGCCTGATTTCCAAAA+GGG	0.515341	2_3:-47287533	Msa0295070:three_prime_UTR
ATATACTCCAGGTTCAAAAT+GGG	0.518411	2_3:+47288120	None:intergenic
GTTATTCTTACGTGCTGCAT+AGG	0.523571	2_3:-47287784	Msa0295070:three_prime_UTR
ATCCCAACCTCCGCAATCAC+AGG	0.524007	2_3:+47288410	None:intergenic
AAAGCTACTGAATATACTCC+AGG	0.543507	2_3:+47288109	None:intergenic
GCAAATGGAGAACGCTTGCA+AGG	0.545356	2_3:+47288069	None:intergenic
GTACCAAGGCATATTAATCT+GGG	0.545421	2_3:-47287266	Msa0295070:three_prime_UTR
GTTCTCCATTTGCATTGCAA+TGG	0.547798	2_3:-47288059	Msa0295070:CDS
ATTTGCATTGCAATGGTGGA+TGG	0.566087	2_3:-47288052	Msa0295070:CDS
GACGAAGGTCCACCATCACT+TGG	0.566445	2_3:+47288462	None:intergenic
GGAAGACTATGAACTCCGCT+TGG	0.570545	2_3:+47288483	None:intergenic
CATAGTCTTCCAAGTGATGG+TGG	0.574925	2_3:-47288471	Msa0295070:CDS
ACATGATTTATTGGTCAACC+AGG	0.576184	2_3:+47287641	None:intergenic
AACTGGAGAGACAGGAGGAT+AGG	0.582482	2_3:+47287898	None:intergenic
TGGAACATACGAAGTTGCAA+AGG	0.585177	2_3:-47287359	Msa0295070:three_prime_UTR
ACAGGTGAACTAAAGGGTCA+TGG	0.599263	2_3:-47287953	Msa0295070:CDS
GTTCATAGTCTTCCAAGTGA+TGG	0.607090	2_3:-47288474	Msa0295070:CDS
TTGATCCAGAAAGTTCGTAA+GGG	0.612802	2_3:+47288023	None:intergenic
TATATGCCGCTAGTCCTCCT+CGG	0.615684	2_3:-47287319	Msa0295070:three_prime_UTR
ATTGAGCGCTGGAAAACTGG+TGG	0.616441	2_3:-47288435	Msa0295070:CDS
CAAATGGAGAACGCTTGCAA+GGG	0.617576	2_3:+47288070	None:intergenic
GGATCAAGAAACTCCATCGA+GGG	0.636295	2_3:-47288007	Msa0295070:CDS
CTATAGATATCTCATTAGCA+AGG	0.636461	2_3:-47287295	Msa0295070:three_prime_UTR
ACTGGTGGATCCTGTGATTG+CGG	0.654665	2_3:-47288420	Msa0295070:CDS
CAGCGCTCAATAAGCGACGA+AGG	0.662885	2_3:+47288447	None:intergenic
TATAGACCGAGGAGGACTAG+CGG	0.674139	2_3:+47287313	None:intergenic
CTTCCAACTGGAGAGACAGG+AGG	0.690282	2_3:+47287893	None:intergenic
TAGCAAGGATGATTGTACCA+AGG	0.699607	2_3:-47287280	Msa0295070:three_prime_UTR
GGTGGATCCTGTGATTGCGG+AGG	0.700883	2_3:-47288417	Msa0295070:CDS
GAGATATCTATAGACCGAGG+AGG	0.710652	2_3:+47287305	None:intergenic
CATCGAGGGAAAGAATCAGG+CGG	0.712324	2_3:-47287993	Msa0295070:CDS
AATGAGATATCTATAGACCG+AGG	0.718687	2_3:+47287302	None:intergenic
TGGATCAAGAAACTCCATCG+AGG	0.728422	2_3:-47288008	Msa0295070:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATTGTAGATTAATCTTAGT+TGG	-	chr2_3:47287511-47287530	Msa0295070:three_prime_UTR	20.0%
!!!	GTAAATTGCATTTTATCTTT+TGG	-	chr2_3:47288066-47288085	Msa0295070:CDS	20.0%
!!	ACTCTAATTACATGATTTAT+TGG	+	chr2_3:47288123-47288142	None:intergenic	20.0%
!!	GATTTACCAAAATTTACATA+TGG	+	chr2_3:47288261-47288280	None:intergenic	20.0%
!!!	TGTAAATTTTGGTAAATCAT+TGG	-	chr2_3:47288263-47288282	Msa0295070:intron	20.0%
!!	TATTGTAGATTAATCTTAGT+TGG	-	chr2_3:47287511-47287530	Msa0295070:three_prime_UTR	20.0%
!!!	GTAAATTGCATTTTATCTTT+TGG	-	chr2_3:47288066-47288085	Msa0295070:CDS	20.0%
!!	ACTCTAATTACATGATTTAT+TGG	+	chr2_3:47288123-47288142	None:intergenic	20.0%
!!	GATTTACCAAAATTTACATA+TGG	+	chr2_3:47288261-47288280	None:intergenic	20.0%
!!!	TGTAAATTTTGGTAAATCAT+TGG	-	chr2_3:47288263-47288282	Msa0295070:intron	20.0%
!	AGATTAATCTACAATATGCT+AGG	+	chr2_3:47287507-47287526	None:intergenic	25.0%
!	AAATGGGAAAAATTGAAAAC+AGG	+	chr2_3:47287619-47287638	None:intergenic	25.0%
!!	TGAGTTCCATATGTAAATTT+TGG	-	chr2_3:47288252-47288271	Msa0295070:intron	25.0%
!	AGATTAATCTACAATATGCT+AGG	+	chr2_3:47287507-47287526	None:intergenic	25.0%
!	AAATGGGAAAAATTGAAAAC+AGG	+	chr2_3:47287619-47287638	None:intergenic	25.0%
!!	TGAGTTCCATATGTAAATTT+TGG	-	chr2_3:47288252-47288271	Msa0295070:intron	25.0%
!!	TCTCTTCCATTGATTTAAGT+TGG	-	chr2_3:47287473-47287492	Msa0295070:three_prime_UTR	30.0%
	GGATAACCAACTTAAATCAA+TGG	+	chr2_3:47287482-47287501	None:intergenic	30.0%
	TAATCTACAATATGCTAGGA+AGG	+	chr2_3:47287503-47287522	None:intergenic	30.0%
	AAGCTATGAATGCTAAATAC+AGG	-	chr2_3:47287567-47287586	Msa0295070:three_prime_UTR	30.0%
	AGCTATGAATGCTAAATACA+GGG	-	chr2_3:47287568-47287587	Msa0295070:three_prime_UTR	30.0%
!	AATTTTTCCCATTTTGAACC+TGG	-	chr2_3:47287625-47287644	Msa0295070:three_prime_UTR	30.0%
	ATATACTCCAGGTTCAAAAT+GGG	+	chr2_3:47287635-47287654	None:intergenic	30.0%
	AATATACTCCAGGTTCAAAA+TGG	+	chr2_3:47287636-47287655	None:intergenic	30.0%
!	TTGGAAGGGTCTAAATTTTA+TGG	-	chr2_3:47287875-47287894	Msa0295070:exon	30.0%
!	CAAATATTTGCTGCACTAAA+TGG	+	chr2_3:47287928-47287947	None:intergenic	30.0%
!!	ATTAGAGTCGTTTTATCGAA+TGG	-	chr2_3:47288135-47288154	Msa0295070:CDS	30.0%
!!	TTAGAGTCGTTTTATCGAAT+GGG	-	chr2_3:47288136-47288155	Msa0295070:CDS	30.0%
!!	TTGAACTCAACTCTAAGATT+CGG	+	chr2_3:47288292-47288311	None:intergenic	30.0%
	ACGTACTTTCAGTTTATGAT+TGG	-	chr2_3:47288313-47288332	Msa0295070:CDS	30.0%
!!	ATTCGTACACCATTGATTTA+CGG	-	chr2_3:47288360-47288379	Msa0295070:CDS	30.0%
	ATGTACTTTCCGTAAATCAA+TGG	+	chr2_3:47288372-47288391	None:intergenic	30.0%
!	TGATTTACGGAAAGTACATT+TGG	-	chr2_3:47288373-47288392	Msa0295070:CDS	30.0%
	CTATAGATATCTCATTAGCA+AGG	-	chr2_3:47288457-47288476	Msa0295070:CDS	30.0%
!!	TCTCTTCCATTGATTTAAGT+TGG	-	chr2_3:47287473-47287492	Msa0295070:three_prime_UTR	30.0%
	GGATAACCAACTTAAATCAA+TGG	+	chr2_3:47287482-47287501	None:intergenic	30.0%
	TAATCTACAATATGCTAGGA+AGG	+	chr2_3:47287503-47287522	None:intergenic	30.0%
	AAGCTATGAATGCTAAATAC+AGG	-	chr2_3:47287567-47287586	Msa0295070:three_prime_UTR	30.0%
	AGCTATGAATGCTAAATACA+GGG	-	chr2_3:47287568-47287587	Msa0295070:three_prime_UTR	30.0%
!	AATTTTTCCCATTTTGAACC+TGG	-	chr2_3:47287625-47287644	Msa0295070:three_prime_UTR	30.0%
	ATATACTCCAGGTTCAAAAT+GGG	+	chr2_3:47287635-47287654	None:intergenic	30.0%
	AATATACTCCAGGTTCAAAA+TGG	+	chr2_3:47287636-47287655	None:intergenic	30.0%
!	TTGGAAGGGTCTAAATTTTA+TGG	-	chr2_3:47287875-47287894	Msa0295070:exon	30.0%
!	CAAATATTTGCTGCACTAAA+TGG	+	chr2_3:47287928-47287947	None:intergenic	30.0%
!!	ATTAGAGTCGTTTTATCGAA+TGG	-	chr2_3:47288135-47288154	Msa0295070:CDS	30.0%
!!	TTAGAGTCGTTTTATCGAAT+GGG	-	chr2_3:47288136-47288155	Msa0295070:CDS	30.0%
!!	TTGAACTCAACTCTAAGATT+CGG	+	chr2_3:47288292-47288311	None:intergenic	30.0%
	ACGTACTTTCAGTTTATGAT+TGG	-	chr2_3:47288313-47288332	Msa0295070:CDS	30.0%
!!	ATTCGTACACCATTGATTTA+CGG	-	chr2_3:47288360-47288379	Msa0295070:CDS	30.0%
	ATGTACTTTCCGTAAATCAA+TGG	+	chr2_3:47288372-47288391	None:intergenic	30.0%
!	TGATTTACGGAAAGTACATT+TGG	-	chr2_3:47288373-47288392	Msa0295070:CDS	30.0%
	CTATAGATATCTCATTAGCA+AGG	-	chr2_3:47288457-47288476	Msa0295070:CDS	30.0%
	TCTGCACGTTTGATTATTGT+TGG	+	chr2_3:47287393-47287412	None:intergenic	35.0%
	TCAATGGAAGAGAAAATACC+TGG	+	chr2_3:47287466-47287485	None:intergenic	35.0%
	GCTATGAATGCTAAATACAG+GGG	-	chr2_3:47287569-47287588	Msa0295070:three_prime_UTR	35.0%
	GGGAAAAATTGAAAACAGGA+CGG	+	chr2_3:47287615-47287634	None:intergenic	35.0%
	AAAGCTACTGAATATACTCC+AGG	+	chr2_3:47287646-47287665	None:intergenic	35.0%
!	GGAGTATATTCAGTAGCTTT+TGG	-	chr2_3:47287646-47287665	Msa0295070:three_prime_UTR	35.0%
	TTGATCCAGAAAGTTCGTAA+GGG	+	chr2_3:47287732-47287751	None:intergenic	35.0%
!!	GAATCTCTATTGGTTCAAAC+AGG	-	chr2_3:47287781-47287800	Msa0295070:three_prime_UTR	35.0%
	GTTCAAACAGGTGAACTAAA+GGG	-	chr2_3:47287793-47287812	Msa0295070:three_prime_UTR	35.0%
	AAAATTTAGACCCTTCCAAC+TGG	+	chr2_3:47287874-47287893	None:intergenic	35.0%
!!	TCATTTTTGTCTCATTCACC+TGG	-	chr2_3:47288093-47288112	Msa0295070:CDS	35.0%
	ACATGATTTATTGGTCAACC+AGG	+	chr2_3:47288114-47288133	None:intergenic	35.0%
	GTAAGTGACCACATTCAAAA+TGG	-	chr2_3:47288158-47288177	Msa0295070:CDS	35.0%
!!	TCAAGAAGCCATTTTGAATG+TGG	+	chr2_3:47288169-47288188	None:intergenic	35.0%
	TACTAAGCCTGATTTCCAAA+AGG	-	chr2_3:47288218-47288237	Msa0295070:intron	35.0%
	ACTAAGCCTGATTTCCAAAA+GGG	-	chr2_3:47288219-47288238	Msa0295070:intron	35.0%
	AATGAGATATCTATAGACCG+AGG	+	chr2_3:47288453-47288472	None:intergenic	35.0%
	TGTACCAAGGCATATTAATC+TGG	-	chr2_3:47288485-47288504	Msa0295070:CDS	35.0%
	GTACCAAGGCATATTAATCT+GGG	-	chr2_3:47288486-47288505	Msa0295070:CDS	35.0%
	TCTGCACGTTTGATTATTGT+TGG	+	chr2_3:47287393-47287412	None:intergenic	35.0%
	TCAATGGAAGAGAAAATACC+TGG	+	chr2_3:47287466-47287485	None:intergenic	35.0%
	GCTATGAATGCTAAATACAG+GGG	-	chr2_3:47287569-47287588	Msa0295070:three_prime_UTR	35.0%
	GGGAAAAATTGAAAACAGGA+CGG	+	chr2_3:47287615-47287634	None:intergenic	35.0%
	AAAGCTACTGAATATACTCC+AGG	+	chr2_3:47287646-47287665	None:intergenic	35.0%
!	GGAGTATATTCAGTAGCTTT+TGG	-	chr2_3:47287646-47287665	Msa0295070:three_prime_UTR	35.0%
	TTGATCCAGAAAGTTCGTAA+GGG	+	chr2_3:47287732-47287751	None:intergenic	35.0%
!!	GAATCTCTATTGGTTCAAAC+AGG	-	chr2_3:47287781-47287800	Msa0295070:three_prime_UTR	35.0%
	GTTCAAACAGGTGAACTAAA+GGG	-	chr2_3:47287793-47287812	Msa0295070:three_prime_UTR	35.0%
	AAAATTTAGACCCTTCCAAC+TGG	+	chr2_3:47287874-47287893	None:intergenic	35.0%
!!	TCATTTTTGTCTCATTCACC+TGG	-	chr2_3:47288093-47288112	Msa0295070:CDS	35.0%
	ACATGATTTATTGGTCAACC+AGG	+	chr2_3:47288114-47288133	None:intergenic	35.0%
	GTAAGTGACCACATTCAAAA+TGG	-	chr2_3:47288158-47288177	Msa0295070:CDS	35.0%
!!	TCAAGAAGCCATTTTGAATG+TGG	+	chr2_3:47288169-47288188	None:intergenic	35.0%
	TACTAAGCCTGATTTCCAAA+AGG	-	chr2_3:47288218-47288237	Msa0295070:intron	35.0%
	ACTAAGCCTGATTTCCAAAA+GGG	-	chr2_3:47288219-47288238	Msa0295070:intron	35.0%
	AATGAGATATCTATAGACCG+AGG	+	chr2_3:47288453-47288472	None:intergenic	35.0%
	TGTACCAAGGCATATTAATC+TGG	-	chr2_3:47288485-47288504	Msa0295070:CDS	35.0%
	GTTCATAGTCTTCCAAGTGA+TGG	-	chr2_3:47287278-47287297	Msa0295070:three_prime_UTR	40.0%
!	TCAGTATGAGCTTTTCTTCC+AGG	-	chr2_3:47287445-47287464	Msa0295070:three_prime_UTR	40.0%
	GTTCTCCATTTGCATTGCAA+TGG	-	chr2_3:47287693-47287712	Msa0295070:three_prime_UTR	40.0%
	ATCCACCATTGCAATGCAAA+TGG	+	chr2_3:47287701-47287720	None:intergenic	40.0%
!	ATTTGCATTGCAATGGTGGA+TGG	-	chr2_3:47287700-47287719	Msa0295070:three_prime_UTR	40.0%
	AAACTCCCTTACGAACTTTC+TGG	-	chr2_3:47287724-47287743	Msa0295070:three_prime_UTR	40.0%
	CTTGATCCAGAAAGTTCGTA+AGG	+	chr2_3:47287733-47287752	None:intergenic	40.0%
	GGTTCAAACAGGTGAACTAA+AGG	-	chr2_3:47287792-47287811	Msa0295070:three_prime_UTR	40.0%
	GTTATTCTTACGTGCTGCAT+AGG	-	chr2_3:47287968-47287987	Msa0295070:CDS	40.0%
!!	TCAACTCCCTTTTGGAAATC+AGG	+	chr2_3:47288228-47288247	None:intergenic	40.0%
!	CTCAATTGTCAACTCCCTTT+TGG	+	chr2_3:47288236-47288255	None:intergenic	40.0%
	TGGAACATACGAAGTTGCAA+AGG	-	chr2_3:47288393-47288412	Msa0295070:CDS	40.0%
	GTTGCAAAGGTTGAAAAAGC+AGG	-	chr2_3:47288406-47288425	Msa0295070:CDS	40.0%
	TAGCAAGGATGATTGTACCA+AGG	-	chr2_3:47288472-47288491	Msa0295070:CDS	40.0%
	GTTCATAGTCTTCCAAGTGA+TGG	-	chr2_3:47287278-47287297	Msa0295070:three_prime_UTR	40.0%
!	TCAGTATGAGCTTTTCTTCC+AGG	-	chr2_3:47287445-47287464	Msa0295070:three_prime_UTR	40.0%
	GTTCTCCATTTGCATTGCAA+TGG	-	chr2_3:47287693-47287712	Msa0295070:three_prime_UTR	40.0%
	ATCCACCATTGCAATGCAAA+TGG	+	chr2_3:47287701-47287720	None:intergenic	40.0%
!	ATTTGCATTGCAATGGTGGA+TGG	-	chr2_3:47287700-47287719	Msa0295070:three_prime_UTR	40.0%
	AAACTCCCTTACGAACTTTC+TGG	-	chr2_3:47287724-47287743	Msa0295070:three_prime_UTR	40.0%
	CTTGATCCAGAAAGTTCGTA+AGG	+	chr2_3:47287733-47287752	None:intergenic	40.0%
	GGTTCAAACAGGTGAACTAA+AGG	-	chr2_3:47287792-47287811	Msa0295070:three_prime_UTR	40.0%
	GTTATTCTTACGTGCTGCAT+AGG	-	chr2_3:47287968-47287987	Msa0295070:CDS	40.0%
!!	TCAACTCCCTTTTGGAAATC+AGG	+	chr2_3:47288228-47288247	None:intergenic	40.0%
!	CTCAATTGTCAACTCCCTTT+TGG	+	chr2_3:47288236-47288255	None:intergenic	40.0%
	TGGAACATACGAAGTTGCAA+AGG	-	chr2_3:47288393-47288412	Msa0295070:CDS	40.0%
	GTTGCAAAGGTTGAAAAAGC+AGG	-	chr2_3:47288406-47288425	Msa0295070:CDS	40.0%
	TAGCAAGGATGATTGTACCA+AGG	-	chr2_3:47288472-47288491	Msa0295070:CDS	40.0%
	CATAGTCTTCCAAGTGATGG+TGG	-	chr2_3:47287281-47287300	Msa0295070:three_prime_UTR	45.0%
!!	CTTATTGAGCGCTGGAAAAC+TGG	-	chr2_3:47287314-47287333	Msa0295070:three_prime_UTR	45.0%
	CAAATGGAGAACGCTTGCAA+GGG	+	chr2_3:47287685-47287704	None:intergenic	45.0%
	CTCCATTTGCATTGCAATGG+TGG	-	chr2_3:47287696-47287715	Msa0295070:three_prime_UTR	45.0%
	TGGATCAAGAAACTCCATCG+AGG	-	chr2_3:47287744-47287763	Msa0295070:three_prime_UTR	45.0%
	GGATCAAGAAACTCCATCGA+GGG	-	chr2_3:47287745-47287764	Msa0295070:three_prime_UTR	45.0%
	GAATCAGGCGGAATCTCTAT+TGG	-	chr2_3:47287771-47287790	Msa0295070:three_prime_UTR	45.0%
	ACAGGTGAACTAAAGGGTCA+TGG	-	chr2_3:47287799-47287818	Msa0295070:three_prime_UTR	45.0%
	GATCGAGTTATGAGCTTGCA+AGG	+	chr2_3:47288000-47288019	None:intergenic	45.0%
	GAGATATCTATAGACCGAGG+AGG	+	chr2_3:47288450-47288469	None:intergenic	45.0%
	CATAGTCTTCCAAGTGATGG+TGG	-	chr2_3:47287281-47287300	Msa0295070:three_prime_UTR	45.0%
!!	CTTATTGAGCGCTGGAAAAC+TGG	-	chr2_3:47287314-47287333	Msa0295070:three_prime_UTR	45.0%
	CAAATGGAGAACGCTTGCAA+GGG	+	chr2_3:47287685-47287704	None:intergenic	45.0%
	CTCCATTTGCATTGCAATGG+TGG	-	chr2_3:47287696-47287715	Msa0295070:three_prime_UTR	45.0%
	TGGATCAAGAAACTCCATCG+AGG	-	chr2_3:47287744-47287763	Msa0295070:three_prime_UTR	45.0%
	GGATCAAGAAACTCCATCGA+GGG	-	chr2_3:47287745-47287764	Msa0295070:three_prime_UTR	45.0%
	GAATCAGGCGGAATCTCTAT+TGG	-	chr2_3:47287771-47287790	Msa0295070:three_prime_UTR	45.0%
	ACAGGTGAACTAAAGGGTCA+TGG	-	chr2_3:47287799-47287818	Msa0295070:three_prime_UTR	45.0%
	GATCGAGTTATGAGCTTGCA+AGG	+	chr2_3:47288000-47288019	None:intergenic	45.0%
	GAGATATCTATAGACCGAGG+AGG	+	chr2_3:47288450-47288469	None:intergenic	45.0%
	GGAAGACTATGAACTCCGCT+TGG	+	chr2_3:47287272-47287291	None:intergenic	50.0%
!!	ATTGAGCGCTGGAAAACTGG+TGG	-	chr2_3:47287317-47287336	Msa0295070:three_prime_UTR	50.0%
!	ACTGGTGGATCCTGTGATTG+CGG	-	chr2_3:47287332-47287351	Msa0295070:three_prime_UTR	50.0%
	ATCCTGTGATTGCGGAGGTT+GGG	-	chr2_3:47287340-47287359	Msa0295070:three_prime_UTR	50.0%
	TGATTGCGGAGGTTGGGATT+TGG	-	chr2_3:47287346-47287365	Msa0295070:three_prime_UTR	50.0%
	GCAAATGGAGAACGCTTGCA+AGG	+	chr2_3:47287686-47287705	None:intergenic	50.0%
	CTCCATCGAGGGAAAGAATC+AGG	-	chr2_3:47287756-47287775	Msa0295070:three_prime_UTR	50.0%
	CATCGAGGGAAAGAATCAGG+CGG	-	chr2_3:47287759-47287778	Msa0295070:three_prime_UTR	50.0%
	AACTGGAGAGACAGGAGGAT+AGG	+	chr2_3:47287857-47287876	None:intergenic	50.0%
	TATCCTCCTGTCTCTCCAGT+TGG	-	chr2_3:47287856-47287875	Msa0295070:three_prime_UTR	50.0%
	TCCTGTCTCTCCAGTTGGAA+GGG	-	chr2_3:47287861-47287880	Msa0295070:three_prime_UTR	50.0%
	TATATGCCGCTAGTCCTCCT+CGG	-	chr2_3:47288433-47288452	Msa0295070:CDS	50.0%
	TATAGACCGAGGAGGACTAG+CGG	+	chr2_3:47288442-47288461	None:intergenic	50.0%
	GGAAGACTATGAACTCCGCT+TGG	+	chr2_3:47287272-47287291	None:intergenic	50.0%
!!	ATTGAGCGCTGGAAAACTGG+TGG	-	chr2_3:47287317-47287336	Msa0295070:three_prime_UTR	50.0%
!	ACTGGTGGATCCTGTGATTG+CGG	-	chr2_3:47287332-47287351	Msa0295070:three_prime_UTR	50.0%
	ATCCTGTGATTGCGGAGGTT+GGG	-	chr2_3:47287340-47287359	Msa0295070:three_prime_UTR	50.0%
	TGATTGCGGAGGTTGGGATT+TGG	-	chr2_3:47287346-47287365	Msa0295070:three_prime_UTR	50.0%
	GCAAATGGAGAACGCTTGCA+AGG	+	chr2_3:47287686-47287705	None:intergenic	50.0%
	CTCCATCGAGGGAAAGAATC+AGG	-	chr2_3:47287756-47287775	Msa0295070:three_prime_UTR	50.0%
	CATCGAGGGAAAGAATCAGG+CGG	-	chr2_3:47287759-47287778	Msa0295070:three_prime_UTR	50.0%
	AACTGGAGAGACAGGAGGAT+AGG	+	chr2_3:47287857-47287876	None:intergenic	50.0%
	TATCCTCCTGTCTCTCCAGT+TGG	-	chr2_3:47287856-47287875	Msa0295070:three_prime_UTR	50.0%
	TCCTGTCTCTCCAGTTGGAA+GGG	-	chr2_3:47287861-47287880	Msa0295070:three_prime_UTR	50.0%
	TATATGCCGCTAGTCCTCCT+CGG	-	chr2_3:47288433-47288452	Msa0295070:CDS	50.0%
	TATAGACCGAGGAGGACTAG+CGG	+	chr2_3:47288442-47288461	None:intergenic	50.0%
	GACGAAGGTCCACCATCACT+TGG	+	chr2_3:47287293-47287312	None:intergenic	55.0%
	CAGCGCTCAATAAGCGACGA+AGG	+	chr2_3:47287308-47287327	None:intergenic	55.0%
	CTTCGTCGCTTATTGAGCGC+TGG	-	chr2_3:47287306-47287325	Msa0295070:three_prime_UTR	55.0%
	GATCCTGTGATTGCGGAGGT+TGG	-	chr2_3:47287339-47287358	Msa0295070:three_prime_UTR	55.0%
	ATCCCAACCTCCGCAATCAC+AGG	+	chr2_3:47287345-47287364	None:intergenic	55.0%
	CGCCTGATTCTTTCCCTCGA+TGG	+	chr2_3:47287761-47287780	None:intergenic	55.0%
!	GGATAGGCAGCGTAACTTGC+AGG	+	chr2_3:47287841-47287860	None:intergenic	55.0%
	CTTCCAACTGGAGAGACAGG+AGG	+	chr2_3:47287862-47287881	None:intergenic	55.0%
	CTCCTGTCTCTCCAGTTGGA+AGG	-	chr2_3:47287860-47287879	Msa0295070:three_prime_UTR	55.0%
	ACCCTTCCAACTGGAGAGAC+AGG	+	chr2_3:47287865-47287884	None:intergenic	55.0%
	GACGAAGGTCCACCATCACT+TGG	+	chr2_3:47287293-47287312	None:intergenic	55.0%
	CAGCGCTCAATAAGCGACGA+AGG	+	chr2_3:47287308-47287327	None:intergenic	55.0%
	CTTCGTCGCTTATTGAGCGC+TGG	-	chr2_3:47287306-47287325	Msa0295070:three_prime_UTR	55.0%
	GATCCTGTGATTGCGGAGGT+TGG	-	chr2_3:47287339-47287358	Msa0295070:three_prime_UTR	55.0%
	ATCCCAACCTCCGCAATCAC+AGG	+	chr2_3:47287345-47287364	None:intergenic	55.0%
	CGCCTGATTCTTTCCCTCGA+TGG	+	chr2_3:47287761-47287780	None:intergenic	55.0%
!	GGATAGGCAGCGTAACTTGC+AGG	+	chr2_3:47287841-47287860	None:intergenic	55.0%
	CTTCCAACTGGAGAGACAGG+AGG	+	chr2_3:47287862-47287881	None:intergenic	55.0%
	CTCCTGTCTCTCCAGTTGGA+AGG	-	chr2_3:47287860-47287879	Msa0295070:three_prime_UTR	55.0%
	ACCCTTCCAACTGGAGAGAC+AGG	+	chr2_3:47287865-47287884	None:intergenic	55.0%
	GGTGGATCCTGTGATTGCGG+AGG	-	chr2_3:47287335-47287354	Msa0295070:three_prime_UTR	60.0%
	GGTGGATCCTGTGATTGCGG+AGG	-	chr2_3:47287335-47287354	Msa0295070:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	47287266	47288508	47287266	ID=Msa0295070;Name=Msa0295070
chr2_3	mRNA	47287266	47288508	47287266	ID=Msa0295070-mRNA-1;Parent=Msa0295070;Name=Msa0295070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|0.5\|1\|0\|0.5\|2\|620\|166
chr2_3	exon	47287266	47288185	47287266	ID=Msa0295070-mRNA-1:exon:14763;Parent=Msa0295070-mRNA-1
chr2_3	exon	47288308	47288508	47288308	ID=Msa0295070-mRNA-1:exon:14762;Parent=Msa0295070-mRNA-1
chr2_3	CDS	47288308	47288508	47288308	ID=Msa0295070-mRNA-1:cds;Parent=Msa0295070-mRNA-1
chr2_3	CDS	47287886	47288185	47287886	ID=Msa0295070-mRNA-1:cds;Parent=Msa0295070-mRNA-1
chr2_3	three_prime_UTR	47287266	47287885	47287266	ID=Msa0295070-mRNA-1:three_prime_utr;Parent=Msa0295070-mRNA-1

Gene Sequence

>Msa0295070

CTTCCAAGCGGAGTTCATAGTCTTCCAAGTGATGGTGGACCTTCGTCGCTTATTGAGCGCTGGAAAACTGGTGGATCCTGTGATTGCGGAGGTTGGGATTTGGCTTGTAAGCTAAAAATTCTTGCCAACAATAATCAAACGTGCAGAAAATCAAGAACATCAGAAGCTTATTTTGCAGATCAGTATGAGCTTTTCTTCCAGGGGACTGAACAATGTCAAGATAACCGTCCTGTTTTCAATTTTTCCCATTTTGAACCTGGAGTATATTCAGTAGCTTTTGGTTCATCACTTTCACCCTTGCAAGCGTTCTCCATTTGCATTGCAATGGTGGATGGCAAACTCCCTTACGAACTTTCTGGATCAAGAAACTCCATCGAGGGAAAGAATCAGGCGGAATCTCTATTGGTTCAAACAGGTGAACTAAAGGGTCATGGTAAATCTGATGACATTCCTGCAAGTTACGCTGCCTATCCTCCTGTCTCTCCAGTTGGAAGGGTCTAA

Protein sequence

>Msa0295070

LPSGVHSLPSDGGPSSLIERWKTGGSCDCGGWDLACKLKILANNNQTCRKSRTSEAYFADQYELFFQGTEQCQDNRPVFNFSHFEPGVYSVAFGSSLSPLQAFSICIAMVDGKLPYELSGSRNSIEGKNQAESLLVQTGELKGHGKSDDIPASYAAYPPVSPVGRV*