AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387410 MtrunA17_Chr1g0187471 94.737 114 6 0 116 229 1 114 1.38e-71 214
Msa1387410 MtrunA17_Chr1g0187471 94.595 111 6 0 1 111 1 111 7.07e-70 210
Msa1387410 MtrunA17_Chr4g0067861 90.351 114 11 0 116 229 1 114 2.42e-70 211
Msa1387410 MtrunA17_Chr4g0067861 90.090 111 11 0 1 111 1 111 1.34e-68 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387410 AT2G20450.1 82.456 114 20 0 116 229 1 114 1.01e-60 187
Msa1387410 AT2G20450.1 81.982 111 20 0 1 111 1 111 4.75e-59 183
Msa1387410 AT4G27090.1 80.702 114 22 0 116 229 1 114 4.40e-60 186
Msa1387410 AT4G27090.1 80.180 111 22 0 1 111 1 111 2.33e-58 181

Find 97 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCTATCAAAATCATTA+AGG 0.237759 tig0020886:+25137 None:intergenic
TGAACCTATCAAAATCATTA+AGG 0.237759 tig0020886:+28877 None:intergenic
TATGCAATCAAAAGCATAAA+TGG 0.243731 tig0020886:+24245 None:intergenic
TTGACGAGATCCTTCTTCTT+AGG 0.248112 tig0020886:+29101 None:intergenic
TTGACGAGATCCTTCTTCTT+AGG 0.250131 tig0020886:+25358 None:intergenic
GTCAACTATGGCCCAGATTA+TGG 0.258615 tig0020886:-25605 Msa1387410:CDS
GTCAACTATGGCCCAGATTA+TGG 0.258615 tig0020886:-29348 Msa1387410:CDS
CATGGGCAATAACATTTCTT+TGG 0.268425 tig0020886:+23750 None:intergenic
CTGAATTGTCCTAGACTTAG+AGG 0.278421 tig0020886:+23933 None:intergenic
ACAACGAGCTTGCCATAATC+TGG 0.305463 tig0020886:+25593 None:intergenic
ACAACGAGCTTGCCATAATC+TGG 0.305463 tig0020886:+29336 None:intergenic
GACATTCATACAATGTTTAC+AGG 0.311357 tig0020886:+23846 None:intergenic
GCTAGTGTTATATTCATAAA+TGG 0.324121 tig0020886:-23773 Msa1387410:three_prime_UTR
GAAAATGGGTTACCCTAGTT+TGG 0.329740 tig0020886:+25552 None:intergenic
GAAAATGGGTTACCCTAGTT+TGG 0.329740 tig0020886:+29295 None:intergenic
GAAAGCCTCTTGAAATTGAT+TGG 0.348542 tig0020886:+25415 None:intergenic
GAAAGCCTCTTGAAATTGAT+TGG 0.348542 tig0020886:+29158 None:intergenic
AATGTCCCTTGTGGACATTC+TGG 0.368012 tig0020886:-23829 Msa1387410:three_prime_UTR
ACGAATATCAACAATGTTCA+TGG 0.386857 tig0020886:+23732 None:intergenic
GTGCCTCAGAAAATCGAAAA+TGG 0.394255 tig0020886:-25748 Msa1387410:intron
GTGCCTCAGAAAATCGAAAA+TGG 0.394255 tig0020886:-29491 Msa1387410:intron
GACTGTTAACATGTAACTTA+CGG 0.428959 tig0020886:+23897 None:intergenic
TGCAGAGGGCTGGTGTTGTT+AGG 0.431787 tig0020886:-24385 Msa1387410:intron
TTGATGTTATCGACCAAACT+AGG 0.433748 tig0020886:-25565 Msa1387410:CDS
TTGATGTTATCGACCAAACT+AGG 0.433748 tig0020886:-29308 Msa1387410:CDS
AAATAAATCTCATAAATAGA+AGG 0.437678 tig0020886:+24282 None:intergenic
GAACCTATCAAAATCATTAA+GGG 0.440003 tig0020886:+25138 None:intergenic
GAACCTATCAAAATCATTAA+GGG 0.440003 tig0020886:+28878 None:intergenic
ACTGTTAACATGTAACTTAC+GGG 0.446737 tig0020886:+23898 None:intergenic
GAGTATTGCAACATTTGTAA+TGG 0.447120 tig0020886:+24022 None:intergenic
AACAATCAATTTCCTTCCCC+AGG 0.448020 tig0020886:+25177 None:intergenic
AACAATCAATTTCCTTCCCC+AGG 0.448020 tig0020886:+28917 None:intergenic
ATTGGAGCTCTCTCCATGTC+AGG 0.463357 tig0020886:+25433 None:intergenic
ATTGGAGCTCTCTCCATGTC+AGG 0.463357 tig0020886:+29176 None:intergenic
AATTCTACCTGCAGCTTCCA+TGG 0.474519 tig0020886:+29076 None:intergenic
AGAGTTGCACTTGTCAACTA+TGG 0.476767 tig0020886:-25617 Msa1387410:CDS
AGAGTTGCACTTGTCAACTA+TGG 0.476767 tig0020886:-29360 Msa1387410:CDS
ACCCACTCTCTCTGCCTTGA+GGG 0.478423 tig0020886:+23979 None:intergenic
TCTTTGCTCCCTCTAAGTCT+AGG 0.480015 tig0020886:-23942 Msa1387410:three_prime_UTR
TTTCAATTTGTGCAGAGGGC+TGG 0.483986 tig0020886:-24395 Msa1387410:intron
GAAGGATCTCGTCAAGGCTA+TGG 0.488672 tig0020886:-25350 Msa1387410:CDS
GGAAATTGATTGTTAAGAAG+AGG 0.493248 tig0020886:-25168 Msa1387410:CDS
GGAAATTGATTGTTAAGAAG+AGG 0.493248 tig0020886:-28908 Msa1387410:CDS
AATCTGTTAGAAGTTTCAAA+TGG 0.493350 tig0020886:-24114 Msa1387410:three_prime_UTR
TTCAAGAGGTTTGTTGAGAT+CGG 0.494020 tig0020886:-25641 Msa1387410:CDS
TTCAAGAGGTTTGTTGAGAT+CGG 0.494020 tig0020886:-29384 Msa1387410:CDS
GCCTTGAGGGTAACAAGTGT+TGG 0.498316 tig0020886:+23992 None:intergenic
CAAGAGAGTTCCTAAGAAGA+AGG 0.504705 tig0020886:-25368 Msa1387410:CDS
CAAGAGAGTTCCTAAGAAGA+AGG 0.504705 tig0020886:-29111 Msa1387410:CDS
AGCTGAGGAAGACGCAGCTT+AGG 0.520038 tig0020886:-24349 Msa1387410:exon
TATGATACCAAGTCATGAAT+CGG 0.522601 tig0020886:+24045 None:intergenic
TACAACTCCGATTCATGACT+TGG 0.533448 tig0020886:-24052 Msa1387410:three_prime_UTR
ACAAGTGGGAGAAGAGCTCC+TGG 0.539704 tig0020886:-25195 Msa1387410:CDS
ACAAGTGGGAGAAGAGCTCC+TGG 0.539704 tig0020886:-28935 Msa1387410:CDS
AATTGATTGTTAAGAAGAGG+AGG 0.539799 tig0020886:-25165 Msa1387410:CDS
AATTGATTGTTAAGAAGAGG+AGG 0.539799 tig0020886:-28905 Msa1387410:CDS
ACACTAGCTTATGCATATCA+TGG 0.544925 tig0020886:+23788 None:intergenic
CAACGAGCTTGCCATAATCT+GGG 0.548769 tig0020886:+25594 None:intergenic
CAACGAGCTTGCCATAATCT+GGG 0.548769 tig0020886:+29337 None:intergenic
CGAATATCAACAATGTTCAT+GGG 0.556230 tig0020886:+23733 None:intergenic
TGATAGATGTGAAGAACAAG+TGG 0.562094 tig0020886:-25210 Msa1387410:intron
TGATAGATGTGAAGAACAAG+TGG 0.562094 tig0020886:-28950 Msa1387410:intron
TACCCTCAAGGCAGAGAGAG+TGG 0.562638 tig0020886:-23981 Msa1387410:three_prime_UTR
GGCACTCGCAGCTGAAACAA+AGG 0.562800 tig0020886:+29509 None:intergenic
GTCAAAGCCATGGAAGCTGC+AGG 0.563654 tig0020886:-29083 Msa1387410:intron
ATCTCAACAAACCTCTTGAA+CGG 0.571035 tig0020886:+25644 None:intergenic
ATCTCAACAAACCTCTTGAA+CGG 0.571035 tig0020886:+29387 None:intergenic
GAAGGATCTCGTCAAAGCCA+TGG 0.572972 tig0020886:-29093 Msa1387410:CDS
TAGCTTATGCATATCATGGT+TGG 0.577923 tig0020886:+23792 None:intergenic
GAGCTCCAATCAATTTCAAG+AGG 0.584468 tig0020886:-25420 Msa1387410:CDS
GAGCTCCAATCAATTTCAAG+AGG 0.584468 tig0020886:-29163 Msa1387410:CDS
ATCAAGCAAGAAAGAGCTAG+AGG 0.585153 tig0020886:-24191 Msa1387410:three_prime_UTR
GGGAGAAGAGCTCCTGGGGA+AGG 0.586483 tig0020886:-25189 Msa1387410:CDS
GGGAGAAGAGCTCCTGGGGA+AGG 0.586483 tig0020886:-28929 Msa1387410:CDS
GTCAAGGCTATGGAAGCTGC+AGG 0.587422 tig0020886:-25340 Msa1387410:intron
TCTTTGTTCAGCCGTTCAAG+AGG 0.591089 tig0020886:-25655 Msa1387410:intron
TCTTTGTTCAGCCGTTCAAG+AGG 0.591089 tig0020886:-29398 Msa1387410:intron
AACCCACTCTCTCTGCCTTG+AGG 0.593852 tig0020886:+23978 None:intergenic
TCTTGTTGATGCACCTGACA+TGG 0.596389 tig0020886:-25446 Msa1387410:CDS
TCTTGTTGATGCACCTGACA+TGG 0.596389 tig0020886:-29189 Msa1387410:CDS
ATTGATTGTTAAGAAGAGGA+GGG 0.602431 tig0020886:-25164 Msa1387410:CDS
ATTGATTGTTAAGAAGAGGA+GGG 0.602431 tig0020886:-28904 Msa1387410:CDS
ACCCTCAAGGCAGAGAGAGT+GGG 0.605053 tig0020886:-23980 Msa1387410:three_prime_UTR
TCCAACACTTGTTACCCTCA+AGG 0.605743 tig0020886:-23993 Msa1387410:three_prime_UTR
TGATGTTATCGACCAAACTA+GGG 0.607546 tig0020886:-25564 Msa1387410:intron
TGATGTTATCGACCAAACTA+GGG 0.607546 tig0020886:-29307 Msa1387410:intron
GGCAAGAACTTGCTAAGCTG+AGG 0.613930 tig0020886:-24364 Msa1387410:exon
AAGTGGGAGAAGAGCTCCTG+GGG 0.619297 tig0020886:-25193 Msa1387410:CDS
AAGTGGGAGAAGAGCTCCTG+GGG 0.619297 tig0020886:-28933 Msa1387410:CDS
GATAGATGTGAAGAACAAGT+GGG 0.623335 tig0020886:-25209 Msa1387410:intron
GATAGATGTGAAGAACAAGT+GGG 0.623335 tig0020886:-28949 Msa1387410:intron
TGAATTGTCCTAGACTTAGA+GGG 0.624453 tig0020886:+23934 None:intergenic
TAAGAAGAAGGATCTCGTCA+AGG 0.637349 tig0020886:-25356 Msa1387410:CDS
CAAGTGGGAGAAGAGCTCCT+GGG 0.641380 tig0020886:-25194 Msa1387410:CDS
CAAGTGGGAGAAGAGCTCCT+GGG 0.641380 tig0020886:-28934 Msa1387410:CDS
CATTGTATGAATGTCCCTTG+TGG 0.683978 tig0020886:-23838 Msa1387410:three_prime_UTR
TTTCACCAGAATGTCCACAA+GGG 0.722276 tig0020886:+23824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAAATTTTATAATTTGAA+AGG - tig0020886:25920-25939 Msa1387410:intron 10.0%
!! ACAAAAATAAATATATAGAT+AGG + tig0020886:27966-27985 None:intergenic 10.0%
!!! ATTTTATGATAAAAGATTAA+GGG + tig0020886:28637-28656 None:intergenic 10.0%
!!! AATTTTATGATAAAAGATTA+AGG + tig0020886:28638-28657 None:intergenic 10.0%
!!! TAATCTTTTATCATAAAATT+TGG - tig0020886:28638-28657 Msa1387410:intron 10.0%
!! ACAAAAATAAATACATAGAT+AGG + tig0020886:24226-24245 None:intergenic 15.0%
!!! TATATTTTGTTTGTTGAAAT+TGG - tig0020886:24255-24274 Msa1387410:three_prime_UTR 15.0%
!!! AATTGGATTTTTTTTTTTTG+TGG - tig0020886:24272-24291 Msa1387410:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTGTGGTAAT+TGG - tig0020886:24279-24298 Msa1387410:three_prime_UTR 15.0%
!! TATGTTCAAAAATTGTTAAA+TGG + tig0020886:24941-24960 None:intergenic 15.0%
!!! TTTTTATGTTAAATGATTAC+TGG + tig0020886:26045-26064 None:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + tig0020886:26368-26387 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + tig0020886:26403-26422 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - tig0020886:26534-26553 Msa1387410:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - tig0020886:26625-26644 Msa1387410:intron 15.0%
!! ACTTATTATCATTATTTGTT+GGG + tig0020886:26699-26718 None:intergenic 15.0%
!! AACTTATTATCATTATTTGT+TGG + tig0020886:26700-26719 None:intergenic 15.0%
!!! ATAATAGCTTTTCTTTATTT+TGG - tig0020886:27393-27412 Msa1387410:intron 15.0%
!!! TAATAGCTTTTCTTTATTTT+GGG - tig0020886:27394-27413 Msa1387410:intron 15.0%
!!! TATATTTTGTTTGTTGAAAT+TGG - tig0020886:24255-24274 Msa1387410:three_prime_UTR 15.0%
!!! AATTGGATTTTTTTTTTTTG+TGG - tig0020886:24272-24291 Msa1387410:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTGTGGTAAT+TGG - tig0020886:24279-24298 Msa1387410:three_prime_UTR 15.0%
!! AAATAAATCTCATAAATAGA+AGG + tig0020886:28986-29005 None:intergenic 15.0%
!! ATTAGAGAAAGATTAAGAAA+TGG + tig0020886:23835-23854 None:intergenic 20.0%
!! AAGATTGGAAATTTGAAAAT+GGG + tig0020886:23987-24006 None:intergenic 20.0%
!! AAAGATTGGAAATTTGAAAA+TGG + tig0020886:23988-24007 None:intergenic 20.0%
!! CTAAAATTATACCTTAATCT+TGG + tig0020886:24426-24445 None:intergenic 20.0%
!! TTAAGTTATTTATCCAAACA+GGG + tig0020886:24576-24595 None:intergenic 20.0%
!! TTTGGATAAATAACTTAACT+TGG - tig0020886:24578-24597 Msa1387410:intron 20.0%
!!! ATTGTTTTTGTATAAGCTTT+AGG - tig0020886:24680-24699 Msa1387410:intron 20.0%
!!! TTGTTTTTGTATAAGCTTTA+GGG - tig0020886:24681-24700 Msa1387410:intron 20.0%
!!! AATCTGTTTCTTAAGTTATT+TGG - tig0020886:24898-24917 Msa1387410:intron 20.0%
!!! TGTTTTTTCAAATTGTGTTT+TGG - tig0020886:25047-25066 Msa1387410:intron 20.0%
!!! GTTTGCATATTTTTTAATGT+TGG - tig0020886:25412-25431 Msa1387410:CDS 20.0%
!! TGAACATATCATTAAGTAAA+TGG - tig0020886:25749-25768 Msa1387410:CDS 20.0%
!! ATCATAATTAACTCATAACA+CGG + tig0020886:25863-25882 None:intergenic 20.0%
!! TATAATTTGAAAGGATTGTA+TGG - tig0020886:25929-25948 Msa1387410:intron 20.0%
!! AAAAAAATCAAAATGACTAC+AGG - tig0020886:25965-25984 Msa1387410:intron 20.0%
!! AGTGCAGAAAAATAAAATTA+GGG + tig0020886:26240-26259 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + tig0020886:26273-26292 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + tig0020886:26274-26293 None:intergenic 20.0%
!!! AGGTCTTTTTTTTTTTTTTG+AGG - tig0020886:26938-26957 Msa1387410:intron 20.0%
!!! GGTCTTTTTTTTTTTTTTGA+GGG - tig0020886:26939-26958 Msa1387410:intron 20.0%
!!! TTTGTGATGTTTTATAAAGA+GGG + tig0020886:27451-27470 None:intergenic 20.0%
!!! TTTTGTGATGTTTTATAAAG+AGG + tig0020886:27452-27471 None:intergenic 20.0%
!! ATTAGAGAAAGATTAAGAAA+TGG + tig0020886:23835-23854 None:intergenic 20.0%
!! AAGATTGGAAATTTGAAAAT+GGG + tig0020886:23987-24006 None:intergenic 20.0%
!! AAAGATTGGAAATTTGAAAA+TGG + tig0020886:23988-24007 None:intergenic 20.0%
!! CTAAAATTATACCTTAATCT+TGG + tig0020886:24426-24445 None:intergenic 20.0%
!! TTAAGTTATTTATCCAAACA+AGG + tig0020886:24576-24595 None:intergenic 20.0%
!!! ATTGTATTTCTATAAGCTTT+AGG - tig0020886:28420-28439 Msa1387410:intron 20.0%
!!! TTGTATTTCTATAAGCTTTA+GGG - tig0020886:28421-28440 Msa1387410:intron 20.0%
!!! GATTGCATATTTTTTAATGT+CGG - tig0020886:29034-29053 Msa1387410:intron 20.0%
!!! GTTTGCATATTTTTTAATGT+TGG - tig0020886:25412-25431 Msa1387410:CDS 20.0%
!!! TTTTGAGAAATTACGCAAAT+GGG + tig0020886:24028-24047 None:intergenic 25.0%
!!! TTTTTGAGAAATTACGCAAA+TGG + tig0020886:24029-24048 None:intergenic 25.0%
! GAACCTATCAAAATCATTAA+GGG + tig0020886:24390-24409 None:intergenic 25.0%
! TGAACCTATCAAAATCATTA+AGG + tig0020886:24391-24410 None:intergenic 25.0%
!!! TTGTGAAATGCTTTTTAGTT+AGG - tig0020886:24466-24485 Msa1387410:intron 25.0%
!! TTAAGTTGTTTAACCAAACA+GGG + tig0020886:24492-24511 None:intergenic 25.0%
!! ATTAAGTTGTTTAACCAAAC+AGG + tig0020886:24493-24512 None:intergenic 25.0%
! GTTAAGTTATTTATCCAAAC+AGG + tig0020886:24577-24596 None:intergenic 25.0%
!! TTTTCATAAGTCAATCCAAA+CGG + tig0020886:24708-24727 None:intergenic 25.0%
! ATAATTTCAATTTGTGCAGA+GGG - tig0020886:25104-25123 Msa1387410:intron 25.0%
! TATGCAATCAAAAGCAAAAA+TGG + tig0020886:25335-25354 None:intergenic 25.0%
!!! CTAGAGGTTTTATTGTTATT+AGG - tig0020886:25390-25409 Msa1387410:CDS 25.0%
! CAAAAATCAACAATGTTCAT+GGG + tig0020886:25792-25811 None:intergenic 25.0%
! ACAAAAATCAACAATGTTCA+TGG + tig0020886:25793-25812 None:intergenic 25.0%
! AATCTGCTTACAAACAAATA+AGG - tig0020886:26136-26155 Msa1387410:intron 25.0%
! ATCTGCTTACAAACAAATAA+GGG - tig0020886:26137-26156 Msa1387410:intron 25.0%
! CAGTGCAGAAAAATAAAATT+AGG + tig0020886:26241-26260 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - tig0020886:26562-26581 Msa1387410:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - tig0020886:26563-26582 Msa1387410:intron 25.0%
!! TTTGAATGTGTATGTCTTTT+AGG + tig0020886:27137-27156 None:intergenic 25.0%
! TTGTTGTATAAGTAAAGATG+AGG - tig0020886:27343-27362 Msa1387410:intron 25.0%
!! TTGTGATGTTTTATAAAGAG+GGG + tig0020886:27450-27469 None:intergenic 25.0%
!!! TTTTGAGAAATTACGCAAAT+GGG + tig0020886:24028-24047 None:intergenic 25.0%
!!! TTTTTGAGAAATTACGCAAA+TGG + tig0020886:24029-24048 None:intergenic 25.0%
! GAACCTATCAAAATCATTAA+GGG + tig0020886:24390-24409 None:intergenic 25.0%
! TGAACCTATCAAAATCATTA+AGG + tig0020886:24391-24410 None:intergenic 25.0%
!!! TTGTGAAATGCTTTTTAGTT+AGG - tig0020886:24466-24485 Msa1387410:intron 25.0%
!!! TGTGAAATGCTTTTTAGTTA+GGG - tig0020886:24467-24486 Msa1387410:intron 25.0%
!! TTTGCATTTTATAGTGTAAG+TGG - tig0020886:28337-28356 Msa1387410:intron 25.0%
!! TTGCATTTTATAGTGTAAGT+GGG - tig0020886:28338-28357 Msa1387410:intron 25.0%
! GGTTATTATATAAGCTGTTA+TGG - tig0020886:28360-28379 Msa1387410:intron 25.0%
! CAAGTTTGTCTATGAAAAAA+CGG + tig0020886:28544-28563 None:intergenic 25.0%
! TAAAATAAGCTAATCCAAAC+AGG - tig0020886:28754-28773 Msa1387410:intron 25.0%
!!! TTGTTTTTCAAATTGTGTCT+AGG - tig0020886:28805-28824 Msa1387410:intron 25.0%
! TTAAATTTCAATTTGTGCAG+AGG - tig0020886:28865-28884 Msa1387410:intron 25.0%
! TAAATTTCAATTTGTGCAGA+GGG - tig0020886:28866-28885 Msa1387410:intron 25.0%
!! TATGCAATCAAAAGCATAAA+TGG + tig0020886:29023-29042 None:intergenic 25.0%
! AATCTGTTAGAAGTTTCAAA+TGG - tig0020886:29151-29170 Msa1387410:CDS 25.0%
! GCTAGTGTTATATTCATAAA+TGG - tig0020886:29492-29511 Msa1387410:exon 25.0%
GGTTGAAAATGGAAAAAGAT+TGG + tig0020886:24002-24021 None:intergenic 30.0%
!!! TTGTGATTTGTTTGTTTTGC+AGG - tig0020886:24052-24071 Msa1387410:three_prime_UTR 30.0%
GGAAATTGATTGTTAAGAAG+AGG - tig0020886:24357-24376 Msa1387410:exon 30.0%
AATTGATTGTTAAGAAGAGG+AGG - tig0020886:24360-24379 Msa1387410:exon 30.0%
ATTGATTGTTAAGAAGAGGA+GGG - tig0020886:24361-24380 Msa1387410:exon 30.0%
TGATAGGTTCAAGATTATGT+TGG - tig0020886:24400-24419 Msa1387410:intron 30.0%
TTGTGAAATGCTCTTAAGTT+GGG - tig0020886:24550-24569 Msa1387410:intron 30.0%
AAAGTTGTATCTTCATAAGC+TGG - tig0020886:24783-24802 Msa1387410:intron 30.0%
TAATATTCATGAGCTTGTCA+AGG + tig0020886:24823-24842 None:intergenic 30.0%
CATAATTTCAATTTGTGCAG+AGG - tig0020886:25103-25122 Msa1387410:intron 30.0%
TCCTTCTATTTAGTACAACT+TGG - tig0020886:25218-25237 Msa1387410:intron 30.0%
TCCAAGTTGTACTAAATAGA+AGG + tig0020886:25222-25241 None:intergenic 30.0%
! TTTTGTATCACTAAGACAGT+TGG - tig0020886:25252-25271 Msa1387410:intron 30.0%
TCTCGTAACACAAATATCTT+AGG + tig0020886:25291-25310 None:intergenic 30.0%
AGACAAAACATGTAACTTAC+AGG + tig0020886:25645-25664 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + tig0020886:26656-26675 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + tig0020886:26655-26674 None:intergenic 30.0%
AAGTAGAGACTAAACTTACA+AGG + tig0020886:26196-26215 None:intergenic 30.0%
CAAGATTAGAACAGTATGAA+AGG + tig0020886:26500-26519 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - tig0020886:26640-26659 Msa1387410:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - tig0020886:26655-26674 Msa1387410:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - tig0020886:26656-26675 Msa1387410:intron 30.0%
!!! CCAATTTTGAAATGGATTTC+AGG + tig0020886:26818-26837 None:intergenic 30.0%
CCTGAAATCCATTTCAAAAT+TGG - tig0020886:26815-26834 Msa1387410:intron 30.0%
AAATCCATTTCAAAATTGGC+AGG - tig0020886:26819-26838 Msa1387410:intron 30.0%
AATCCATTTCAAAATTGGCA+GGG - tig0020886:26820-26839 Msa1387410:intron 30.0%
GATTAAATTGTGGGTGTATT+TGG + tig0020886:26893-26912 None:intergenic 30.0%
TTGTATAAGTAAAGATGAGG+TGG - tig0020886:27346-27365 Msa1387410:intron 30.0%
TGTATAAGTAAAGATGAGGT+GGG - tig0020886:27347-27366 Msa1387410:intron 30.0%
!! GAAGAGTGTTGTCAAAATTA+GGG + tig0020886:27476-27495 None:intergenic 30.0%
!! AGAAGAGTGTTGTCAAAATT+AGG + tig0020886:27477-27496 None:intergenic 30.0%
GGTTGAAAATGGAAAAAGAT+TGG + tig0020886:24002-24021 None:intergenic 30.0%
!!! TTGTGATTTGTTTGTTTTGC+AGG - tig0020886:24052-24071 Msa1387410:three_prime_UTR 30.0%
GGAAATTGATTGTTAAGAAG+AGG - tig0020886:24357-24376 Msa1387410:exon 30.0%
AATTGATTGTTAAGAAGAGG+AGG - tig0020886:24360-24379 Msa1387410:exon 30.0%
ATTGATTGTTAAGAAGAGGA+GGG - tig0020886:24361-24380 Msa1387410:exon 30.0%
TGATAGGTTCAAGATTATGT+TGG - tig0020886:24400-24419 Msa1387410:intron 30.0%
TTGTGAAATGCTCTTAAGTT+GGG - tig0020886:24550-24569 Msa1387410:intron 30.0%
! TGCATTTTATAGTGTAAGTG+GGG - tig0020886:28339-28358 Msa1387410:intron 30.0%
! TGGAGATACAATGTTTGTTA+GGG + tig0020886:28517-28536 None:intergenic 30.0%
ATGGAGATACAATGTTTGTT+AGG + tig0020886:28518-28537 None:intergenic 30.0%
TAAAAGATTAAGGGTCTGTT+TGG + tig0020886:28628-28647 None:intergenic 30.0%
!!! CTAGAGGTTTTATTGGTATT+AGG - tig0020886:29090-29109 Msa1387410:CDS 30.0%
TATGATACCAAGTCATGAAT+CGG + tig0020886:29223-29242 None:intergenic 30.0%
! GAGTATTGCAACATTTGTAA+TGG + tig0020886:29246-29265 None:intergenic 30.0%
ACTGTTAACATGTAACTTAC+GGG + tig0020886:29370-29389 None:intergenic 30.0%
GACTGTTAACATGTAACTTA+CGG + tig0020886:29371-29390 None:intergenic 30.0%
GACATTCATACAATGTTTAC+AGG + tig0020886:29422-29441 None:intergenic 30.0%
! TCACCATTTTCGATTTTCTG+AGG + tig0020886:23780-23799 None:intergenic 35.0%
ATCTCAACAAACCTCTTGAA+CGG + tig0020886:23881-23900 None:intergenic 35.0%
!! TTCAAGAGGTTTGTTGAGAT+CGG - tig0020886:23881-23900 Msa1387410:three_prime_UTR 35.0%
TTGATGTTATCGACCAAACT+AGG - tig0020886:23957-23976 Msa1387410:three_prime_UTR 35.0%
TGATGTTATCGACCAAACTA+GGG - tig0020886:23958-23977 Msa1387410:three_prime_UTR 35.0%
GAAAGCCTCTTGAAATTGAT+TGG + tig0020886:24110-24129 None:intergenic 35.0%
TGATAGATGTGAAGAACAAG+TGG - tig0020886:24315-24334 Msa1387410:three_prime_UTR 35.0%
GATAGATGTGAAGAACAAGT+GGG - tig0020886:24316-24335 Msa1387410:three_prime_UTR 35.0%
!! CTGCCCTTAATGATTTTGAT+AGG - tig0020886:24384-24403 Msa1387410:intron 35.0%
GATTATGTTGGCCAAGATTA+AGG - tig0020886:24412-24431 Msa1387410:intron 35.0%
GTTGTGAAATGCTCTTAAGT+TGG - tig0020886:24549-24568 Msa1387410:intron 35.0%
TGGAGCTTATTGTGTAAATG+TGG - tig0020886:24598-24617 Msa1387410:intron 35.0%
GGTTATTATACGAGCTGTTA+TGG - tig0020886:24619-24638 Msa1387410:intron 35.0%
CAGATTAAGTCTGTTCAGAT+TGG + tig0020886:24884-24903 None:intergenic 35.0%
! ACCACACATAAGTTTCAAGT+TGG - tig0020886:24960-24979 Msa1387410:intron 35.0%
ACCAACTTGAAACTTATGTG+TGG + tig0020886:24964-24983 None:intergenic 35.0%
AACCCTATAAACTCAGCTAA+GGG + tig0020886:25021-25040 None:intergenic 35.0%
AAACCCTATAAACTCAGCTA+AGG + tig0020886:25022-25041 None:intergenic 35.0%
! GAGTATTGCAGCATTTGTAA+TGG + tig0020886:25524-25543 None:intergenic 35.0%
TGATGAATTGTCCTAGACTA+GGG + tig0020886:25612-25631 None:intergenic 35.0%
ATGATGAATTGTCCTAGACT+AGG + tig0020886:25613-25632 None:intergenic 35.0%
TACACCTTAAACACCATTAC+AGG - tig0020886:26077-26096 Msa1387410:intron 35.0%
CATTCCTGTAATGGTGTTTA+AGG + tig0020886:26084-26103 None:intergenic 35.0%
TGCTCTATGTGCATTTGATT+TGG + tig0020886:26865-26884 None:intergenic 35.0%
CAGAGTTGGGATTAAATTGT+GGG + tig0020886:26902-26921 None:intergenic 35.0%
ACAGAGTTGGGATTAAATTG+TGG + tig0020886:26903-26922 None:intergenic 35.0%
CAATTTAATCCCAACTCTGT+TGG - tig0020886:26903-26922 Msa1387410:intron 35.0%
!!! TTTTTTTTGAGGGACTTAGC+TGG - tig0020886:26949-26968 Msa1387410:intron 35.0%
!!! TTTTTTTGAGGGACTTAGCT+GGG - tig0020886:26950-26969 Msa1387410:intron 35.0%
GATTGATTGTTTGTGTTGCA+GGG + tig0020886:27096-27115 None:intergenic 35.0%
ATCAAGTGTGCTAAGATGTT+TGG + tig0020886:27172-27191 None:intergenic 35.0%
GTATAAGTAAAGATGAGGTG+GGG - tig0020886:27348-27367 Msa1387410:intron 35.0%
!! TGTTTTATAAAGAGGGGCAT+TGG + tig0020886:27444-27463 None:intergenic 35.0%
! TCACCATTTTCGATTTTCTG+AGG + tig0020886:23780-23799 None:intergenic 35.0%
ATCTCAACAAACCTCTTGAA+CGG + tig0020886:23881-23900 None:intergenic 35.0%
!! TTCAAGAGGTTTGTTGAGAT+CGG - tig0020886:23881-23900 Msa1387410:three_prime_UTR 35.0%
TTGATGTTATCGACCAAACT+AGG - tig0020886:23957-23976 Msa1387410:three_prime_UTR 35.0%
TGATGTTATCGACCAAACTA+GGG - tig0020886:23958-23977 Msa1387410:three_prime_UTR 35.0%
GAAAGCCTCTTGAAATTGAT+TGG + tig0020886:24110-24129 None:intergenic 35.0%
TGATAGATGTGAAGAACAAG+TGG - tig0020886:24315-24334 Msa1387410:three_prime_UTR 35.0%
GATAGATGTGAAGAACAAGT+GGG - tig0020886:24316-24335 Msa1387410:three_prime_UTR 35.0%
!! CTGCCCTTAATGATTTTGAT+AGG - tig0020886:24384-24403 Msa1387410:intron 35.0%
GATTATGTTGGCCAAGATTA+AGG - tig0020886:24412-24431 Msa1387410:intron 35.0%
! TTAAGTTGTCTATCCAAGCA+GGG + tig0020886:28233-28252 None:intergenic 35.0%
! ATTAAGTTGTCTATCCAAGC+AGG + tig0020886:28234-28253 None:intergenic 35.0%
GTTGTGAAATGCTCTTAAGT+TGG - tig0020886:24549-24568 Msa1387410:intron 35.0%
TTCTCATAACCCAATTCAAG+CGG + tig0020886:28448-28467 None:intergenic 35.0%
GTCTATGAAAAAACGGCTTA+TGG + tig0020886:28537-28556 None:intergenic 35.0%
!!! TTTGGATTGGCTTCTTTTTG+AGG + tig0020886:28610-28629 None:intergenic 35.0%
AACCCTACATACTCAACTAA+GGG + tig0020886:28780-28799 None:intergenic 35.0%
AAACCCTACATACTCAACTA+AGG + tig0020886:28781-28800 None:intergenic 35.0%
!! GAAAGAGCTAGAGGTTTTAT+TGG - tig0020886:25383-25402 Msa1387410:CDS 35.0%
TGAATTGTCCTAGACTTAGA+GGG + tig0020886:29334-29353 None:intergenic 35.0%
TAGCTTATGCATATCATGGT+TGG + tig0020886:29476-29495 None:intergenic 35.0%
! ACACTAGCTTATGCATATCA+TGG + tig0020886:29480-29499 None:intergenic 35.0%
CATGGGCAATAACATTTCTT+TGG + tig0020886:29518-29537 None:intergenic 35.0%
GTGCCTCAGAAAATCGAAAA+TGG - tig0020886:23774-23793 Msa1387410:three_prime_UTR 40.0%
AGAGTTGCACTTGTCAACTA+TGG - tig0020886:23905-23924 Msa1387410:three_prime_UTR 40.0%
!! GAAAATGGGTTACCCTAGTT+TGG + tig0020886:23973-23992 None:intergenic 40.0%
!! CAAATGGGCTAGGTTGAAAA+TGG + tig0020886:24013-24032 None:intergenic 40.0%
! AGAAATTACGCAAATGGGCT+AGG + tig0020886:24023-24042 None:intergenic 40.0%
GAGCTCCAATCAATTTCAAG+AGG - tig0020886:24102-24121 Msa1387410:three_prime_UTR 40.0%
CAAGAGAGTTCCTAAGAAGA+AGG - tig0020886:24154-24173 Msa1387410:three_prime_UTR 40.0%
TTGACGAGATCCTTCTTCTT+AGG + tig0020886:24167-24186 None:intergenic 40.0%
AACAATCAATTTCCTTCCCC+AGG + tig0020886:24351-24370 None:intergenic 40.0%
!!! CTTTTTAGTTAGGCCCTGTT+TGG - tig0020886:24476-24495 Msa1387410:intron 40.0%
TTTGCAGCTTGTAGTTCAAG+TGG - tig0020886:24512-24531 Msa1387410:intron 40.0%
!! TATAAGCTTTAGGGTCCGTT+TGG - tig0020886:24690-24709 Msa1387410:intron 40.0%
AAGCCCTTAGCTGAGTTTAT+AGG - tig0020886:25015-25034 Msa1387410:intron 40.0%
AGCCCTTAGCTGAGTTTATA+GGG - tig0020886:25016-25035 Msa1387410:intron 40.0%
ATGAAGTAATGCCTAAGCAG+CGG + tig0020886:25169-25188 None:intergenic 40.0%
ATCAAGCAAGAAAGAGCTAG+AGG - tig0020886:25374-25393 Msa1387410:CDS 40.0%
! TCCAATACTTGTTACCCTCA+AGG - tig0020886:25550-25569 Msa1387410:intron 40.0%
CATGGGCAGTAACATTTCTT+TGG + tig0020886:25775-25794 None:intergenic 40.0%
ACAAGTGAGCATTCCTGTAA+TGG + tig0020886:26093-26112 None:intergenic 40.0%
!!! CTTCTCATTTTTTCCCCTGA+TGG + tig0020886:26788-26807 None:intergenic 40.0%
!! TGACCCTGCCAATTTTGAAA+TGG + tig0020886:26826-26845 None:intergenic 40.0%
!! CACATTTTGCGTCGATAATC+TGG + tig0020886:27002-27021 None:intergenic 40.0%
TGTTGCAGGGTAGCAATTTA+TGG + tig0020886:27083-27102 None:intergenic 40.0%
GGATTGATTGTTTGTGTTGC+AGG + tig0020886:27097-27116 None:intergenic 40.0%
!! TAGGTTTGACTTGACACTCA+GGG + tig0020886:27118-27137 None:intergenic 40.0%
!! TTAGGTTTGACTTGACACTC+AGG + tig0020886:27119-27138 None:intergenic 40.0%
!! ATAAAGAGGGGCATTGGAAT+GGG + tig0020886:27438-27457 None:intergenic 40.0%
!! TATAAAGAGGGGCATTGGAA+TGG + tig0020886:27439-27458 None:intergenic 40.0%
GTGCCTCAGAAAATCGAAAA+TGG - tig0020886:23774-23793 Msa1387410:three_prime_UTR 40.0%
AGAGTTGCACTTGTCAACTA+TGG - tig0020886:23905-23924 Msa1387410:three_prime_UTR 40.0%
!! GAAAATGGGTTACCCTAGTT+TGG + tig0020886:23973-23992 None:intergenic 40.0%
!! CAAATGGGCTAGGTTGAAAA+TGG + tig0020886:24013-24032 None:intergenic 40.0%
! AGAAATTACGCAAATGGGCT+AGG + tig0020886:24023-24042 None:intergenic 40.0%
GAGCTCCAATCAATTTCAAG+AGG - tig0020886:24102-24121 Msa1387410:three_prime_UTR 40.0%
CAAGAGAGTTCCTAAGAAGA+AGG - tig0020886:24154-24173 Msa1387410:three_prime_UTR 40.0%
TTGACGAGATCCTTCTTCTT+AGG + tig0020886:24167-24186 None:intergenic 40.0%
TAAGAAGAAGGATCTCGTCA+AGG - tig0020886:24166-24185 Msa1387410:three_prime_UTR 40.0%
AACAATCAATTTCCTTCCCC+AGG + tig0020886:24351-24370 None:intergenic 40.0%
TTTGCAGCTTGTAGTTCAAG+TGG - tig0020886:24512-24531 Msa1387410:intron 40.0%
TCTCATAACCCAATTCAAGC+GGG + tig0020886:28447-28466 None:intergenic 40.0%
GATTAAGGGTCTGTTTGGAT+TGG + tig0020886:28623-28642 None:intergenic 40.0%
TGTCTGTGAGTACTTATGTG+TGG + tig0020886:28705-28724 None:intergenic 40.0%
ATCAAGCAAGAAAGAGCTAG+AGG - tig0020886:25374-25393 Msa1387410:CDS 40.0%
TACAACTCCGATTCATGACT+TGG - tig0020886:29213-29232 Msa1387410:intron 40.0%
CTGAATTGTCCTAGACTTAG+AGG + tig0020886:29335-29354 None:intergenic 40.0%
CATTGTATGAATGTCCCTTG+TGG - tig0020886:29427-29446 Msa1387410:intron 40.0%
TTTCACCAGAATGTCCACAA+GGG + tig0020886:29444-29463 None:intergenic 40.0%
! TTTTCACCAGAATGTCCACA+AGG + tig0020886:29445-29464 None:intergenic 40.0%
TCTTTGTTCAGCCGTTCAAG+AGG - tig0020886:23867-23886 Msa1387410:three_prime_UTR 45.0%
GTCAACTATGGCCCAGATTA+TGG - tig0020886:23917-23936 Msa1387410:three_prime_UTR 45.0%
CAACGAGCTTGCCATAATCT+GGG + tig0020886:23931-23950 None:intergenic 45.0%
ACAACGAGCTTGCCATAATC+TGG + tig0020886:23932-23951 None:intergenic 45.0%
TCTTGTTGATGCACCTGACA+TGG - tig0020886:24076-24095 Msa1387410:three_prime_UTR 45.0%
AATTCTACCTGCAGCTTCCA+TGG + tig0020886:24192-24211 None:intergenic 45.0%
! AGCTAAGGGCTTGTTTGGAT+TGG + tig0020886:25007-25026 None:intergenic 45.0%
! AACTCAGCTAAGGGCTTGTT+TGG + tig0020886:25012-25031 None:intergenic 45.0%
TTTCAATTTGTGCAGAGGGC+TGG - tig0020886:25108-25127 Msa1387410:intron 45.0%
GCCTTGAGGGTAACAAGTAT+TGG + tig0020886:25554-25573 None:intergenic 45.0%
TGTTCTTTGCTCCCTAGTCT+AGG - tig0020886:25598-25617 Msa1387410:CDS 45.0%
TATGTCTAGCTACTCCCTTG+TGG - tig0020886:25715-25734 Msa1387410:intron 45.0%
ATGTCTAGCTACTCCCTTGT+GGG - tig0020886:25716-25735 Msa1387410:intron 45.0%
TCACCAGAATATGCCCACAA+GGG + tig0020886:25732-25751 None:intergenic 45.0%
TTCACCAGAATATGCCCACA+AGG + tig0020886:25733-25752 None:intergenic 45.0%
GTGAGATGCAACTTCCATCA+GGG - tig0020886:26771-26790 Msa1387410:intron 45.0%
TGAGATGCAACTTCCATCAG+GGG - tig0020886:26772-26791 Msa1387410:intron 45.0%
CAGCTAATGCCAACAGAGTT+GGG + tig0020886:26915-26934 None:intergenic 45.0%
TCAGCTAATGCCAACAGAGT+TGG + tig0020886:26916-26935 None:intergenic 45.0%
TCTGTTGGCATTAGCTGAGA+AGG - tig0020886:26918-26937 Msa1387410:intron 45.0%
! CGTCGATAATCTGGAGCATT+TGG + tig0020886:26993-27012 None:intergenic 45.0%
!! ACATACAACCTGCGTTGACT+TGG + tig0020886:27056-27075 None:intergenic 45.0%
ATTGGAATGGGCCTTTGTTC+GGG + tig0020886:27426-27445 None:intergenic 45.0%
CATTGGAATGGGCCTTTGTT+CGG + tig0020886:27427-27446 None:intergenic 45.0%
TCTTTGTTCAGCCGTTCAAG+AGG - tig0020886:23867-23886 Msa1387410:three_prime_UTR 45.0%
GTCAACTATGGCCCAGATTA+TGG - tig0020886:23917-23936 Msa1387410:three_prime_UTR 45.0%
CAACGAGCTTGCCATAATCT+GGG + tig0020886:23931-23950 None:intergenic 45.0%
ACAACGAGCTTGCCATAATC+TGG + tig0020886:23932-23951 None:intergenic 45.0%
TCTTGTTGATGCACCTGACA+TGG - tig0020886:24076-24095 Msa1387410:three_prime_UTR 45.0%
!!! TTTTTAGTTAGGGCCCTGCT+TGG - tig0020886:28217-28236 Msa1387410:intron 45.0%
!! CTCTTAAGTTGGGCCTTGTT+TGG - tig0020886:28301-28320 Msa1387410:intron 45.0%
TACTCAACTAAGGGCCTGTT+TGG + tig0020886:28771-28790 None:intergenic 45.0%
AGGCCCTTAGTTGAGTATGT+AGG - tig0020886:28774-28793 Msa1387410:intron 45.0%
GGCCCTTAGTTGAGTATGTA+GGG - tig0020886:28775-28794 Msa1387410:intron 45.0%
TTTCAATTTGTGCAGAGGGC+TGG - tig0020886:25108-25127 Msa1387410:intron 45.0%
! TCCAACACTTGTTACCCTCA+AGG - tig0020886:29272-29291 Msa1387410:intron 45.0%
TCTTTGCTCCCTCTAAGTCT+AGG - tig0020886:29323-29342 Msa1387410:CDS 45.0%
AATGTCCCTTGTGGACATTC+TGG - tig0020886:29436-29455 Msa1387410:intron 45.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - tig0020886:26595-26614 Msa1387410:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - tig0020886:26596-26615 Msa1387410:intron 5.0%
!!! AATTAAATTTTAAATGATTT+TGG + tig0020886:27283-27302 None:intergenic 5.0%
ATTGGAGCTCTCTCCATGTC+AGG + tig0020886:24092-24111 None:intergenic 50.0%
GAAGGATCTCGTCAAAGCCA+TGG - tig0020886:24172-24191 Msa1387410:three_prime_UTR 50.0%
!! CTCTTAAGTTGGGCCCTGTT+TGG - tig0020886:24560-24579 Msa1387410:intron 50.0%
!! GGCAAGAACTTGCTAAGCTG+AGG - tig0020886:25139-25158 Msa1387410:intron 50.0%
ACTCCCTTGTGGGCATATTC+TGG - tig0020886:25726-25745 Msa1387410:intron 50.0%
CGTGAGATGCAACTTCCATC+AGG - tig0020886:26770-26789 Msa1387410:intron 50.0%
TTTGAGGGACTTAGCTGGGA+AGG - tig0020886:26954-26973 Msa1387410:intron 50.0%
ATGTCTTGCCAAGTCAACGC+AGG - tig0020886:27045-27064 Msa1387410:intron 50.0%
ATGGGCCTTTGTTCGGGTAT+GGG + tig0020886:27420-27439 None:intergenic 50.0%
AATGGGCCTTTGTTCGGGTA+TGG + tig0020886:27421-27440 None:intergenic 50.0%
ATTGGAGCTCTCTCCATGTC+AGG + tig0020886:24092-24111 None:intergenic 50.0%
GAAGGATCTCGTCAAGGCTA+TGG - tig0020886:27915-27934 Msa1387410:intron 50.0%
!! CTTTAGGGCCCGCTTGAATT+GGG - tig0020886:28436-28455 Msa1387410:intron 50.0%
!! GGCAAGAACTTGCTAAGCTG+AGG - tig0020886:25139-25158 Msa1387410:intron 50.0%
GCCTTGAGGGTAACAAGTGT+TGG + tig0020886:29276-29295 None:intergenic 50.0%
GGCACTCGCAGCTGAAACAA+AGG + tig0020886:23759-23778 None:intergenic 55.0%
GTCAAAGCCATGGAAGCTGC+AGG - tig0020886:24182-24201 Msa1387410:three_prime_UTR 55.0%
ACAAGTGGGAGAAGAGCTCC+TGG - tig0020886:24330-24349 Msa1387410:three_prime_UTR 55.0%
CAAGTGGGAGAAGAGCTCCT+GGG - tig0020886:24331-24350 Msa1387410:three_prime_UTR 55.0%
AAGTGGGAGAAGAGCTCCTG+GGG - tig0020886:24332-24351 Msa1387410:three_prime_UTR 55.0%
!! TGCAGAGGGCTGGTGTTGTT+AGG - tig0020886:25118-25137 Msa1387410:intron 55.0%
TACCCTCAAGGCTGAGAGAG+TGG - tig0020886:25562-25581 Msa1387410:intron 55.0%
ACCCTCAAGGCTGAGAGAGT+GGG - tig0020886:25563-25582 Msa1387410:intron 55.0%
ACCCACTCTCTCAGCCTTGA+GGG + tig0020886:25567-25586 None:intergenic 55.0%
AACCCACTCTCTCAGCCTTG+AGG + tig0020886:25568-25587 None:intergenic 55.0%
TTGGGCCCATACCCGAACAA+AGG - tig0020886:27412-27431 Msa1387410:intron 55.0%
GGCACTCGCAGCTGAAACAA+AGG + tig0020886:23759-23778 None:intergenic 55.0%
GTCAAGGCTATGGAAGCTGC+AGG - tig0020886:27925-27944 Msa1387410:intron 55.0%
ACAAGTGGGAGAAGAGCTCC+TGG - tig0020886:24330-24349 Msa1387410:three_prime_UTR 55.0%
CAAGTGGGAGAAGAGCTCCT+GGG - tig0020886:24331-24350 Msa1387410:three_prime_UTR 55.0%
AAGTGGGAGAAGAGCTCCTG+GGG - tig0020886:24332-24351 Msa1387410:three_prime_UTR 55.0%
!! GCTTTAGGGCCCGCTTGAAT+TGG - tig0020886:28435-28454 Msa1387410:intron 55.0%
!! TGCAGAGGGCTGGTGTTGTT+AGG - tig0020886:25118-25137 Msa1387410:intron 55.0%
AGCTGAGGAAGACGCAGCTT+AGG - tig0020886:28916-28935 Msa1387410:CDS 55.0%
TACCCTCAAGGCAGAGAGAG+TGG - tig0020886:29284-29303 Msa1387410:intron 55.0%
ACCCTCAAGGCAGAGAGAGT+GGG - tig0020886:29285-29304 Msa1387410:intron 55.0%
ACCCACTCTCTCTGCCTTGA+GGG + tig0020886:29289-29308 None:intergenic 55.0%
AACCCACTCTCTCTGCCTTG+AGG + tig0020886:29290-29309 None:intergenic 55.0%
GCTGAGGAAGACCGCTGCTT+AGG - tig0020886:25155-25174 Msa1387410:CDS 60.0%
GGGAGAAGAGCTCCTGGGGA+AGG - tig0020886:24336-24355 Msa1387410:three_prime_UTR 65.0%
GGGAGAAGAGCTCCTGGGGA+AGG - tig0020886:24336-24355 Msa1387410:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0020886 gene 23740 29547 23740 ID=Msa1387410;Name=Msa1387410
tig0020886 mRNA 23740 29547 23740 ID=Msa1387410-mRNA-1;Parent=Msa1387410;Name=Msa1387410-mRNA-1;_AED=0.16;_eAED=0.16;_QI=53|0.75|0.66|1|1|1|9|626|233
tig0020886 exon 23740 24402 23740 ID=Msa1387410-mRNA-1:exon:10636;Parent=Msa1387410-mRNA-1
tig0020886 exon 25142 25226 25142 ID=Msa1387410-mRNA-1:exon:10635;Parent=Msa1387410-mRNA-1
tig0020886 exon 25341 25470 25341 ID=Msa1387410-mRNA-1:exon:10634;Parent=Msa1387410-mRNA-1
tig0020886 exon 25565 25666 25565 ID=Msa1387410-mRNA-1:exon:10633;Parent=Msa1387410-mRNA-1
tig0020886 exon 25749 25776 25749 ID=Msa1387410-mRNA-1:exon:10632;Parent=Msa1387410-mRNA-1
tig0020886 exon 28882 28966 28882 ID=Msa1387410-mRNA-1:exon:10631;Parent=Msa1387410-mRNA-1
tig0020886 exon 29084 29213 29084 ID=Msa1387410-mRNA-1:exon:10630;Parent=Msa1387410-mRNA-1
tig0020886 exon 29308 29409 29308 ID=Msa1387410-mRNA-1:exon:10629;Parent=Msa1387410-mRNA-1
tig0020886 exon 29492 29547 29492 ID=Msa1387410-mRNA-1:exon:10628;Parent=Msa1387410-mRNA-1
tig0020886 five_prime_UTR 29495 29547 29495 ID=Msa1387410-mRNA-1:five_prime_utr;Parent=Msa1387410-mRNA-1
tig0020886 CDS 29492 29494 29492 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 29308 29409 29308 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 29084 29213 29084 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 28882 28966 28882 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 25749 25776 25749 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 25565 25666 25565 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 25341 25470 25341 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 25142 25226 25142 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 CDS 24366 24402 24366 ID=Msa1387410-mRNA-1:cds;Parent=Msa1387410-mRNA-1
tig0020886 three_prime_UTR 23740 24365 23740 ID=Msa1387410-mRNA-1:three_prime_utr;Parent=Msa1387410-mRNA-1
Gene Sequence

>Msa1387410

ATGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAAGCCATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGCTGCGAGTGCCTCAGAAAATCGAAAATGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAGGCTATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGAGGGCTGGTGTTGTTAGGCAAGAACTTGCTAAGCTGA

Protein sequence

>Msa1387410

MPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDSCECLRKSKMPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRGLVLLGKNLLS*