AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351500 MtrunA17_Chr3g0086601 93.141 277 16 1 66 339 1 277 6.29e-180 499
Msa0351500 MtrunA17_Chr6g0470101 46.231 199 101 3 141 336 92 287 2.75e-51 174
Msa0351500 MtrunA17_Chr5g0398991 42.169 166 91 3 155 316 72 236 7.10e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351500 AT4G18975.3 60.223 269 93 3 85 339 18 286 2.13e-111 326
Msa0351500 AT4G18975.4 60.223 269 93 3 85 339 18 286 2.13e-111 326
Msa0351500 AT4G18975.1 60.223 269 93 3 85 339 18 286 2.13e-111 326
Msa0351500 AT4G18975.2 70.616 211 59 1 132 339 49 259 1.55e-109 320
Msa0351500 AT4G21190.1 43.939 198 107 2 141 334 45 242 1.45e-49 168
Msa0351500 AT1G04590.1 34.975 203 128 2 118 316 110 312 1.04e-32 125
Msa0351500 AT1G04590.2 34.951 206 127 3 118 316 110 315 3.40e-31 121

Find 89 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGAATATACTTCCATTTA+AGG 0.114121 3_1:+18350427 None:intergenic
ACTTCTTCTGGCATTTGATA+TGG 0.235335 3_1:-18351054 Msa0351500:CDS
AATGAGAAAGAGGCTGTTTA+TGG 0.250949 3_1:-18351914 Msa0351500:CDS
ATTGAGCTTTCAATTGTTAT+AGG 0.253274 3_1:+18354746 None:intergenic
TAAACAGCCTCTTTCTCATT+AGG 0.256749 3_1:+18351917 None:intergenic
TTTGATTCGTTGTCATTTAT+CGG 0.288470 3_1:-18350130 Msa0351500:three_prime_UTR
TCAAACGATATGGCCTTAAA+TGG 0.299839 3_1:-18350440 Msa0351500:CDS
ACCATGAGTTGAACTACATT+TGG 0.318381 3_1:-18350085 Msa0351500:three_prime_UTR
GCAGATGACAAGAATTTATT+CGG 0.331283 3_1:+18354588 None:intergenic
TTTCGATCGGATAACTTTGC+AGG 0.334235 3_1:+18354431 None:intergenic
CCATGAGTTGAACTACATTT+GGG 0.334570 3_1:-18350084 Msa0351500:three_prime_UTR
CCAAGAAGAGAAAAGGAAAT+TGG 0.335972 3_1:-18350466 Msa0351500:CDS
TATTACTGTCGATTCAGATT+TGG 0.346212 3_1:+18355921 None:intergenic
TAAATGACAACGAATCAAAT+TGG 0.350392 3_1:+18350134 None:intergenic
AAACAGCCTCTTTCTCATTA+GGG 0.352186 3_1:+18351918 None:intergenic
CGAGATTAAGAAGAAGGAAT+TGG 0.366482 3_1:-18355954 Msa0351500:CDS
TGACAAGAGTGAGTGCCTTT+TGG 0.368397 3_1:+18354211 None:intergenic
TTCCTGACTGTATCTTCATC+AGG 0.368904 3_1:+18350516 None:intergenic
AACATACGACACACTTCTTC+TGG 0.373920 3_1:-18351066 Msa0351500:CDS
TTTATGGAGCGTTAGACATA+TGG 0.375804 3_1:-18351898 Msa0351500:CDS
TGCAGACATGGAGGAGTTGC+GGG 0.383431 3_1:-18350544 Msa0351500:CDS
AATCTCTTCTTTGCCACAAA+TGG 0.401215 3_1:+18354247 None:intergenic
GCCTTAGCTACTGCAATCAA+TGG 0.402188 3_1:+18351854 None:intergenic
TTACCAAACATGTCCTTTGT+AGG 0.406684 3_1:+18354708 None:intergenic
CATGTCCTTTGTAGGAGTAT+TGG 0.415249 3_1:+18354716 None:intergenic
TAGTTCAACTCATGGTTGAT+AGG 0.418130 3_1:+18350092 None:intergenic
AAATTGGTAATCAAACGATA+TGG 0.420660 3_1:-18350450 Msa0351500:CDS
TTGATTCGTTGTCATTTATC+GGG 0.431033 3_1:-18350129 Msa0351500:three_prime_UTR
CGTTAGACATATGGACGGCC+TGG 0.441130 3_1:-18351889 Msa0351500:CDS
TTCGTTAAAGTTGAGTCGAT+TGG 0.448565 3_1:-18350228 Msa0351500:three_prime_UTR
ATTATGAATGACATTGAAAT+CGG 0.449272 3_1:-18350358 Msa0351500:three_prime_UTR
TCGTTAAAGTTGAGTCGATT+GGG 0.457325 3_1:-18350227 Msa0351500:three_prime_UTR
CCCATTGATTGCAGTAGCTA+AGG 0.457671 3_1:-18351855 Msa0351500:CDS
TGGAAGTATATTCACTTCAA+TGG 0.460351 3_1:-18350420 Msa0351500:CDS
AACTAGGCCAAGAAGAGAAA+AGG 0.461313 3_1:-18350473 Msa0351500:CDS
ACTCCTACAAAGGACATGTT+TGG 0.467437 3_1:-18354711 Msa0351500:intron
TTCTGCCGTTGTTGAATCAA+AGG 0.474900 3_1:-18350276 Msa0351500:three_prime_UTR
TATTCACTTCAATGGTGAAC+GGG 0.477233 3_1:-18350412 Msa0351500:CDS
TTCAGCTCAGTCTGGCCAAA+AGG 0.481114 3_1:-18354226 Msa0351500:CDS
AAAGGACAAGGAGCAACAAT+GGG 0.484217 3_1:-18351089 Msa0351500:CDS
GGTTCTCGGGAAACGAAGTC+GGG 0.487552 3_1:+18350200 None:intergenic
TCCTTTGCTCAACATCCACT+TGG 0.488600 3_1:+18351106 None:intergenic
CACAGACGAGATTAAGAAGA+AGG 0.501632 3_1:-18355960 Msa0351500:CDS
TGGTTCTCGGGAAACGAAGT+CGG 0.507284 3_1:+18350199 None:intergenic
AGAAGAGATTCAGCTCAGTC+TGG 0.512118 3_1:-18354234 Msa0351500:CDS
GTTAGACATATGGACGGCCT+GGG 0.513135 3_1:-18351888 Msa0351500:CDS
GCAAGTGCCTTTAGAAAACT+AGG 0.517052 3_1:-18350489 Msa0351500:CDS
TGAACTCCCTAATGAGAAAG+AGG 0.519498 3_1:-18351924 Msa0351500:CDS
ATCATCACGACGACCACTAT+CGG 0.519603 3_1:+18355877 None:intergenic
CTTAAGGAAAAGGGCTCAGT+GGG 0.521402 3_1:-18351822 Msa0351500:CDS
GTAAGATAGAACACCATTTG+TGG 0.522756 3_1:-18354260 Msa0351500:CDS
AGTTTAGGTATTTGCAGACA+TGG 0.522937 3_1:-18350556 Msa0351500:intron
AAATTGAGTCTGAATGTTGT+TGG 0.529709 3_1:-18354411 Msa0351500:CDS
CAAAGGACAAGGAGCAACAA+TGG 0.533105 3_1:-18351090 Msa0351500:CDS
CCTTAGCTACTGCAATCAAT+GGG 0.533642 3_1:+18351855 None:intergenic
TGTTGGTGGTTCTGTTGAGA+AGG 0.534069 3_1:-18354394 Msa0351500:CDS
CCCAAATGTAGTTCAACTCA+TGG 0.540454 3_1:+18350084 None:intergenic
TCTGCCGTTGTTGAATCAAA+GGG 0.543247 3_1:-18350275 Msa0351500:three_prime_UTR
TTTCACCAATACTCCTACAA+AGG 0.547411 3_1:-18354721 Msa0351500:CDS
TCTGCCAGATAAAATTATAG+AGG 0.547684 3_1:-18350919 Msa0351500:intron
TTGCAGACATGGAGGAGTTG+CGG 0.549472 3_1:-18350545 Msa0351500:CDS
TCTTAGACACAGAGCGCATG+TGG 0.553949 3_1:+18350982 None:intergenic
TGCAATAAGTATTACTCCGA+AGG 0.554372 3_1:-18354568 Msa0351500:intron
TTGAGTCTGAATGTTGTTGG+TGG 0.560648 3_1:-18354408 Msa0351500:CDS
AACCTGATGAAGATACAGTC+AGG 0.560887 3_1:-18350518 Msa0351500:CDS
CAATGGGAACTCTATTTCCC+AGG 0.564369 3_1:+18351871 None:intergenic
CATTCAGACTCAATTTCGAT+CGG 0.584775 3_1:+18354418 None:intergenic
AATCAAAGGGTCGAGTGCAA+AGG 0.592567 3_1:-18350262 Msa0351500:three_prime_UTR
TGAGAGTTAGAACACATGCA+TGG 0.592856 3_1:-18350389 Msa0351500:CDS
TGAAGATACAGTCAGGAAAG+TGG 0.595011 3_1:-18350511 Msa0351500:CDS
ATATTCACTTCAATGGTGAA+CGG 0.595717 3_1:-18350413 Msa0351500:CDS
GAGAGTTAGAACACATGCAT+GGG 0.598805 3_1:-18350388 Msa0351500:CDS
TATGGAACAGAGAGTAGATG+AGG 0.602182 3_1:-18351036 Msa0351500:CDS
GAAACAAAAGGAGCTAGTAG+AGG 0.609876 3_1:-18355986 Msa0351500:CDS
TATACTTTCAGTTAGCCAAG+TGG 0.620511 3_1:-18351121 Msa0351500:intron
TAGATGAGGCAGAATCCTTG+TGG 0.623540 3_1:-18351022 Msa0351500:CDS
TCTTAAGGAAAAGGGCTCAG+TGG 0.626223 3_1:-18351823 Msa0351500:CDS
GCCAAGTGGATGTTGAGCAA+AGG 0.633935 3_1:-18351107 Msa0351500:CDS
TGGATGTTGAGCAAAGGACA+AGG 0.634699 3_1:-18351101 Msa0351500:CDS
TTTCGAGATAGTGATGCTGT+CGG 0.637498 3_1:+18354783 None:intergenic
ATGAGTTGAACTACATTTGG+GGG 0.653723 3_1:-18350082 Msa0351500:three_prime_UTR
CATGAGTTGAACTACATTTG+GGG 0.664765 3_1:-18350083 Msa0351500:three_prime_UTR
ATGTATAATCATATTCCACA+AGG 0.667188 3_1:+18351007 None:intergenic
TGGAGCGTTAGACATATGGA+CGG 0.676897 3_1:-18351894 Msa0351500:CDS
TCGACCCTTTGATTCAACAA+CGG 0.680404 3_1:+18350271 None:intergenic
CTTAGACACAGAGCGCATGT+GGG 0.683166 3_1:+18350983 None:intergenic
TTAGGTATTTGCAGACATGG+AGG 0.688313 3_1:-18350553 Msa0351500:intron
GTCGTCGTGATGATAGACGC+CGG 0.716289 3_1:-18355868 Msa0351500:CDS
GTCGTGATGATAGACGCCGG+TGG 0.744717 3_1:-18355865 Msa0351500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAAAAAGAAACAAA+AGG - chr3_1:18350170-18350189 Msa0351500:three_prime_UTR 10.0%
!! TATTAAATCTGATAAAAATT+TGG - chr3_1:18355413-18355432 Msa0351500:intron 10.0%
!!! AAATTTCTAAAAAATGGATT+AGG + chr3_1:18350061-18350080 None:intergenic 15.0%
!!! TTTCACAAATTTCTAAAAAA+TGG + chr3_1:18350067-18350086 None:intergenic 15.0%
!!! CATTCATTCATTTTTAATTT+GGG + chr3_1:18350682-18350701 None:intergenic 15.0%
!!! TCATTCATTCATTTTTAATT+TGG + chr3_1:18350683-18350702 None:intergenic 15.0%
!!! TATTCAATGTATTTTTTTTG+TGG + chr3_1:18350824-18350843 None:intergenic 15.0%
!! TTTAAAAATCTTAAGGAAAA+GGG - chr3_1:18354337-18354356 Msa0351500:intron 15.0%
!!! TGCTTTATTTATAACATATA+TGG - chr3_1:18354622-18354641 Msa0351500:intron 15.0%
!!! GTAAATGTTAAACTTATTTT+TGG - chr3_1:18356190-18356209 Msa0351500:intron 15.0%
!!! GACAAGAAAAAATGTTATTT+TGG - chr3_1:18350614-18350633 Msa0351500:intron 20.0%
!! AAAAGAATGAAAAAACTTAG+AGG - chr3_1:18350644-18350663 Msa0351500:intron 20.0%
!! AATGCATAATGTAATATGTA+AGG - chr3_1:18350778-18350797 Msa0351500:intron 20.0%
!! ATAATGTAATATGTAAGGTA+GGG - chr3_1:18350783-18350802 Msa0351500:intron 20.0%
!! GACAATATTTGTACTAAATT+TGG + chr3_1:18351026-18351045 None:intergenic 20.0%
!!! AAGAATTGAAATTTTGTTGT+TGG - chr3_1:18351271-18351290 Msa0351500:intron 20.0%
!!! TATTTTCTGTAATTTGTGTA+TGG - chr3_1:18352070-18352089 Msa0351500:intron 20.0%
!! AAATCAAATAAAGTCATGTA+TGG + chr3_1:18352220-18352239 None:intergenic 20.0%
!! TCATATAACTGTTTATGTTA+TGG - chr3_1:18352240-18352259 Msa0351500:intron 20.0%
!! GAATAGATATGTTAAATAGT+AGG + chr3_1:18352295-18352314 None:intergenic 20.0%
!! TAAGATTAAACAGTAAAAGA+AGG + chr3_1:18352832-18352851 None:intergenic 20.0%
!! TGATTAAAAAGTTTCTGATT+TGG - chr3_1:18352882-18352901 Msa0351500:intron 20.0%
!! GATTAAAAAGTTTCTGATTT+GGG - chr3_1:18352883-18352902 Msa0351500:intron 20.0%
!! GCTAAGATTTATTTAATACA+AGG - chr3_1:18353709-18353728 Msa0351500:intron 20.0%
!! AGATTTATTTAATACAAGGA+TGG - chr3_1:18353713-18353732 Msa0351500:intron 20.0%
!! TATAAAGAAAGCTAATTTAC+TGG + chr3_1:18354044-18354063 None:intergenic 20.0%
!!! AAATTAGCTTTCTTTATATC+TGG - chr3_1:18354046-18354065 Msa0351500:intron 20.0%
!!! CTTTAAAAATCTTAAGGAAA+AGG - chr3_1:18354336-18354355 Msa0351500:intron 20.0%
!! TTTATAACATATATGGTTTG+AGG - chr3_1:18354629-18354648 Msa0351500:intron 20.0%
!!! AAATGTTGTTTCAACTTTTA+TGG - chr3_1:18354687-18354706 Msa0351500:intron 20.0%
!! ATATGAAATTCATGAATTCA+TGG - chr3_1:18354943-18354962 Msa0351500:intron 20.0%
!! ATTATGAATGACATTGAAAT+CGG - chr3_1:18355810-18355829 Msa0351500:intron 20.0%
!!! TATTTTCTGTTTTAATCTTC+TGG + chr3_1:18355992-18356011 None:intergenic 20.0%
!! ATTAACTTTCCAGAATCTTT+TGG - chr3_1:18350024-18350043 Msa0351500:three_prime_UTR 25.0%
!!! TTTCTAAAAAATGGATTAGG+AGG + chr3_1:18350058-18350077 None:intergenic 25.0%
!!! ACATTTTTTCTTGTCTTTTG+AGG + chr3_1:18350609-18350628 None:intergenic 25.0%
! CATAATGTAATATGTAAGGT+AGG - chr3_1:18350782-18350801 Msa0351500:intron 25.0%
! TAATGTAATATGTAAGGTAG+GGG - chr3_1:18350784-18350803 Msa0351500:intron 25.0%
!!! ATGTATTTTTTTTGTGGTGT+CGG + chr3_1:18350818-18350837 None:intergenic 25.0%
! ATATTGTCAAATAACGACTA+AGG - chr3_1:18351038-18351057 Msa0351500:CDS 25.0%
!! AGAATCAATGTTATTGATTG+TGG + chr3_1:18351230-18351249 None:intergenic 25.0%
! ATTGAGCTTTCAATTGTTAT+AGG + chr3_1:18351425-18351444 None:intergenic 25.0%
! TGAAGCAATTATTATACCTT+CGG + chr3_1:18351619-18351638 None:intergenic 25.0%
!!! TAAATTTGCTAATGTGTGTT+TGG - chr3_1:18351829-18351848 Msa0351500:CDS 25.0%
!! TGTGAATAATCTGTTTTATG+TGG - chr3_1:18351855-18351874 Msa0351500:CDS 25.0%
! AACACTATAATATGTAGCTT+AGG + chr3_1:18352041-18352060 None:intergenic 25.0%
! AAGCTACATATTATAGTGTT+AGG - chr3_1:18352041-18352060 Msa0351500:intron 25.0%
!!! ATTTTGGTGCTAAAAGATTA+AGG - chr3_1:18352390-18352409 Msa0351500:intron 25.0%
! CATGTAGTAAATAACAGTAT+AGG - chr3_1:18352413-18352432 Msa0351500:intron 25.0%
! AAATAACAGTATAGGATATG+TGG - chr3_1:18352421-18352440 Msa0351500:intron 25.0%
! AATAACAGTATAGGATATGT+GGG - chr3_1:18352422-18352441 Msa0351500:intron 25.0%
! AACTATACCAGAATTTGATA+TGG - chr3_1:18352447-18352466 Msa0351500:intron 25.0%
!!! AACAGCTTTAGGATTATATA+TGG - chr3_1:18352673-18352692 Msa0351500:intron 25.0%
!! TAGTAGATATATTTTGTGCA+AGG - chr3_1:18352776-18352795 Msa0351500:intron 25.0%
!! ATTCGCTGTTAAACAAATTT+TGG - chr3_1:18352996-18353015 Msa0351500:intron 25.0%
!!! GTTAAACAAATTTTGGTGAT+TGG - chr3_1:18353003-18353022 Msa0351500:intron 25.0%
!! TAAATGTTTTGTCAAATGTC+AGG + chr3_1:18353029-18353048 None:intergenic 25.0%
! TCTATCACTAAAAATCTCAT+TGG + chr3_1:18353104-18353123 None:intergenic 25.0%
! TAAACACTAAAGGAGAATAT+TGG + chr3_1:18353629-18353648 None:intergenic 25.0%
! ATTCAAGCATATATTGCAAA+CGG + chr3_1:18353988-18354007 None:intergenic 25.0%
! ATGCTGTAATGTAAAAAAAG+AGG - chr3_1:18354006-18354025 Msa0351500:intron 25.0%
!! TTGCTATGTTGAGTTAATTT+TGG - chr3_1:18354187-18354206 Msa0351500:intron 25.0%
!!! CTAAGGCTTTAAAAATCTTA+AGG - chr3_1:18354330-18354349 Msa0351500:intron 25.0%
!! CAATCATTCATTTTATGAGA+AGG + chr3_1:18354541-18354560 None:intergenic 25.0%
! TAAAATGAATGATTGTTTGC+TGG - chr3_1:18354546-18354565 Msa0351500:intron 25.0%
! ATAAGTACTTAAATCCAAAC+TGG + chr3_1:18354715-18354734 None:intergenic 25.0%
! TTTATCACACATCTTAGAAT+TGG - chr3_1:18354902-18354921 Msa0351500:intron 25.0%
! ATGTATAATCATATTCCACA+AGG + chr3_1:18355164-18355183 None:intergenic 25.0%
!! GATACCTCTATAATTTTATC+TGG + chr3_1:18355256-18355275 None:intergenic 25.0%
!!! TATAGAGGTATCTCTTTTAT+AGG - chr3_1:18355264-18355283 Msa0351500:intron 25.0%
!! AAATTGGTAATCAAACGATA+TGG - chr3_1:18355718-18355737 Msa0351500:intron 25.0%
! AGTGAATATACTTCCATTTA+AGG + chr3_1:18355744-18355763 None:intergenic 25.0%
! TAAATGACAACGAATCAAAT+TGG + chr3_1:18356037-18356056 None:intergenic 25.0%
!! TTTGATTCGTTGTCATTTAT+CGG - chr3_1:18356038-18356057 Msa0351500:intron 25.0%
!! ATGGTTCTATTTTGCAGATT+TGG - chr3_1:18349947-18349966 Msa0351500:three_prime_UTR 30.0%
GAATACAAACCAAAAGATTC+TGG + chr3_1:18350036-18350055 None:intergenic 30.0%
ATGTAAAACCAAAACCACAA+AGG - chr3_1:18350092-18350111 Msa0351500:three_prime_UTR 30.0%
!! ATTTAATTTTCCCACCTTTG+TGG + chr3_1:18350109-18350128 None:intergenic 30.0%
!! TATTACTGTCGATTCAGATT+TGG + chr3_1:18350250-18350269 None:intergenic 30.0%
! TAATAGAGCTGCAGAATTTT+CGG - chr3_1:18350265-18350284 Msa0351500:three_prime_UTR 30.0%
AAGAAAGGGTGATAAAGAAA+GGG - chr3_1:18350385-18350404 Msa0351500:CDS 30.0%
ATAAAGAAAGGGTGAAGAAA+GGG - chr3_1:18350396-18350415 Msa0351500:CDS 30.0%
ATAAAGAATGTGTTTGTGTG+TGG - chr3_1:18350443-18350462 Msa0351500:CDS 30.0%
TAAAGAATGTGTTTGTGTGT+GGG - chr3_1:18350444-18350463 Msa0351500:CDS 30.0%
! GGACTATTCAATGTATTGAT+AGG + chr3_1:18350730-18350749 None:intergenic 30.0%
! TAAATTTAGCTCAGTTGGTA+AGG - chr3_1:18350753-18350772 Msa0351500:intron 30.0%
!!! TGTATTTTTTTTGTGGTGTC+GGG + chr3_1:18350817-18350836 None:intergenic 30.0%
ACTCTACTATGAAAACAAGT+TGG - chr3_1:18350877-18350896 Msa0351500:intron 30.0%
!! ATTGGTTTGAATTCAATCTG+AGG - chr3_1:18351079-18351098 Msa0351500:CDS 30.0%
! TTGGTTTGAATTCAATCTGA+GGG - chr3_1:18351080-18351099 Msa0351500:CDS 30.0%
! ACGTTTATAATGGAGGTTAT+CGG - chr3_1:18351192-18351211 Msa0351500:intron 30.0%
! TCAATGTTATTGATTGTGGA+TGG + chr3_1:18351226-18351245 None:intergenic 30.0%
!!! TTGAAATTTTGTTGTTGGAC+AGG - chr3_1:18351276-18351295 Msa0351500:intron 30.0%
GCAGATGACAAGAATTTATT+CGG + chr3_1:18351583-18351602 None:intergenic 30.0%
AAATTGAGTCTGAATGTTGT+TGG - chr3_1:18351757-18351776 Msa0351500:intron 30.0%
! TTTTATGTGGAATGCAGAAA+AGG - chr3_1:18351868-18351887 Msa0351500:CDS 30.0%
TTTATGTGGAATGCAGAAAA+GGG - chr3_1:18351869-18351888 Msa0351500:CDS 30.0%
AGAAAAGGGAAGAAGAAAAA+AGG - chr3_1:18351883-18351902 Msa0351500:CDS 30.0%
GAAAAGGGAAGAAGAAAAAA+GGG - chr3_1:18351884-18351903 Msa0351500:CDS 30.0%
AAAAGGGAAGAAGAAAAAAG+GGG - chr3_1:18351885-18351904 Msa0351500:CDS 30.0%
!! TCGTTTTTGTTCACAATCTT+CGG - chr3_1:18352011-18352030 Msa0351500:intron 30.0%
TTATGAAAGAGTTGTATACC+CGG - chr3_1:18352123-18352142 Msa0351500:intron 30.0%
!! GAAAGGATGAATGGATTTTT+CGG - chr3_1:18352474-18352493 Msa0351500:intron 30.0%
TTATTCCATCCTTATCAACT+TGG + chr3_1:18352634-18352653 None:intergenic 30.0%
ATAATTACGCCTAAAGTGAT+AGG - chr3_1:18352650-18352669 Msa0351500:intron 30.0%
AATGTTAATCTTGCCTAGAT+TGG - chr3_1:18353247-18353266 Msa0351500:intron 30.0%
CTGATGGAATAATGAATGTT+AGG - chr3_1:18353433-18353452 Msa0351500:intron 30.0%
AATTGTGGTCAAGATTCATT+GGG + chr3_1:18353590-18353609 None:intergenic 30.0%
TAATTGTGGTCAAGATTCAT+TGG + chr3_1:18353591-18353610 None:intergenic 30.0%
TGGAAGATGTTAAACACTAA+AGG + chr3_1:18353639-18353658 None:intergenic 30.0%
AATCTTAGCACCTAAAAGAA+TGG + chr3_1:18353698-18353717 None:intergenic 30.0%
AGTCTTCTGCATAATATTCT+CGG + chr3_1:18353757-18353776 None:intergenic 30.0%
!!! TGGCCACTCAATAATTTTTT+GGG + chr3_1:18353810-18353829 None:intergenic 30.0%
!! ATCACTAAGAGAGTTAGTTT+TGG - chr3_1:18353852-18353871 Msa0351500:intron 30.0%
! TTAGCTTTCTTTATATCTGG+AGG - chr3_1:18354049-18354068 Msa0351500:intron 30.0%
! AATTTTCTTGTATTCGAGTC+CGG + chr3_1:18354083-18354102 None:intergenic 30.0%
GTCTATTGTGAATCTTGAAA+TGG - chr3_1:18354213-18354232 Msa0351500:CDS 30.0%
!! ACACAAGTTCTAGAAAATAG+TGG + chr3_1:18354395-18354414 None:intergenic 30.0%
GGAAAAAAGATATCATGAGA+AGG + chr3_1:18354472-18354491 None:intergenic 30.0%
!!! TTTTTTCCGTACATTACATG+TGG - chr3_1:18354484-18354503 Msa0351500:intron 30.0%
CTAAACAATGTTCATGTTGA+TGG + chr3_1:18354805-18354824 None:intergenic 30.0%
!!! TGCATGAGTTTTGACTTTTT+TGG - chr3_1:18354869-18354888 Msa0351500:intron 30.0%
! TCTAAGATGTGTGATAAATC+TGG + chr3_1:18354900-18354919 None:intergenic 30.0%
TCTGCCAGATAAAATTATAG+AGG - chr3_1:18355249-18355268 Msa0351500:intron 30.0%
! TCTCTTTTATAGGAATGTAG+AGG - chr3_1:18355274-18355293 Msa0351500:intron 30.0%
!!! TAGGAATGTAGAGGTATTTT+TGG - chr3_1:18355283-18355302 Msa0351500:intron 30.0%
ACTGTTTGATCAAGATCTAA+CGG - chr3_1:18355371-18355390 Msa0351500:intron 30.0%
GCTATCTTGTATGTAAGTTT+AGG - chr3_1:18355597-18355616 Msa0351500:intron 30.0%
! TGGAAGTATATTCACTTCAA+TGG - chr3_1:18355748-18355767 Msa0351500:intron 30.0%
ATATTCACTTCAATGGTGAA+CGG - chr3_1:18355755-18355774 Msa0351500:intron 30.0%
!!! TGTTTTAATCTTCTGGTTCT+CGG + chr3_1:18355985-18356004 None:intergenic 30.0%
! TTGATTCGTTGTCATTTATC+GGG - chr3_1:18356039-18356058 Msa0351500:intron 30.0%
!!! GTGGTTTTGGTTTTACATTG+TGG + chr3_1:18350090-18350109 None:intergenic 35.0%
TAAAACCAAAACCACAAAGG+TGG - chr3_1:18350095-18350114 Msa0351500:three_prime_UTR 35.0%
AAAACCAAAACCACAAAGGT+GGG - chr3_1:18350096-18350115 Msa0351500:three_prime_UTR 35.0%
CGAGATTAAGAAGAAGGAAT+TGG - chr3_1:18350214-18350233 Msa0351500:three_prime_UTR 35.0%
GAAGAAAGGGTGATAAAGAA+AGG - chr3_1:18350384-18350403 Msa0351500:CDS 35.0%
GATAAAGAAAGGGTGAAGAA+AGG - chr3_1:18350395-18350414 Msa0351500:CDS 35.0%
!! CACTTGTTGCATTTTTGTGT+GGG - chr3_1:18350477-18350496 Msa0351500:CDS 35.0%
!! CTTGTCTTTTGAGGACAAAA+AGG + chr3_1:18350600-18350619 None:intergenic 35.0%
!!! GTATTTTTTTTGTGGTGTCG+GGG + chr3_1:18350816-18350835 None:intergenic 35.0%
TCAGTACTACTACTTCAGTT+CGG + chr3_1:18350910-18350929 None:intergenic 35.0%
TACTGAACTCAAGAACTTAC+CGG - chr3_1:18350924-18350943 Msa0351500:CDS 35.0%
AAAAAACCTGGAAGACTTTC+TGG + chr3_1:18350965-18350984 None:intergenic 35.0%
! AGAATTCAAGTTACGAGAGA+AGG + chr3_1:18350988-18351007 None:intergenic 35.0%
TGGTTTGAATTCAATCTGAG+GGG - chr3_1:18351081-18351100 Msa0351500:CDS 35.0%
CCATTATAAACGTCGATATC+TGG + chr3_1:18351185-18351204 None:intergenic 35.0%
CCAGATATCGACGTTTATAA+TGG - chr3_1:18351182-18351201 Msa0351500:intron 35.0%
GATATCGACGTTTATAATGG+AGG - chr3_1:18351185-18351204 Msa0351500:intron 35.0%
! ATGTTATTGATTGTGGATGG+AGG + chr3_1:18351223-18351242 None:intergenic 35.0%
TTGATTCTGTCTAGACTAGA+TGG - chr3_1:18351242-18351261 Msa0351500:intron 35.0%
!!! ATTTTGTTGTTGGACAGGTA+TGG - chr3_1:18351281-18351300 Msa0351500:intron 35.0%
TTTCACCAATACTCCTACAA+AGG - chr3_1:18351447-18351466 Msa0351500:intron 35.0%
TTACCAAACATGTCCTTTGT+AGG + chr3_1:18351463-18351482 None:intergenic 35.0%
TCTGCGAGAAAAGAAGATAA+GGG + chr3_1:18351555-18351574 None:intergenic 35.0%
TGCAATAAGTATTACTCCGA+AGG - chr3_1:18351600-18351619 Msa0351500:intron 35.0%
CATTCAGACTCAATTTCGAT+CGG + chr3_1:18351753-18351772 None:intergenic 35.0%
TTCTGTTGAGAAGGATAAGT+AGG - chr3_1:18351783-18351802 Msa0351500:intron 35.0%
AAAGGGAAGAAGAAAAAAGG+GGG - chr3_1:18351886-18351905 Msa0351500:CDS 35.0%
GTAAGATAGAACACCATTTG+TGG - chr3_1:18351908-18351927 Msa0351500:CDS 35.0%
AATCTCTTCTTTGCCACAAA+TGG + chr3_1:18351924-18351943 None:intergenic 35.0%
TCAGAACTGTATGTTCATCT+AGG - chr3_1:18351977-18351996 Msa0351500:intron 35.0%
!! TTCTGAGATATGATCATACG+AGG - chr3_1:18352095-18352114 Msa0351500:intron 35.0%
! TCTGAGATATGATCATACGA+GGG - chr3_1:18352096-18352115 Msa0351500:intron 35.0%
!!! ACTTTAGTCCAGTTTTTTCC+GGG + chr3_1:18352144-18352163 None:intergenic 35.0%
!!! CACTTTAGTCCAGTTTTTTC+CGG + chr3_1:18352145-18352164 None:intergenic 35.0%
! GTGAAATCATAGCTGCATTT+TGG - chr3_1:18352374-18352393 Msa0351500:intron 35.0%
TACCAGAATTTGATATGGTC+TGG - chr3_1:18352452-18352471 Msa0351500:intron 35.0%
TTCCAGACCATATCAAATTC+TGG + chr3_1:18352457-18352476 None:intergenic 35.0%
GAATTTGATATGGTCTGGAA+AGG - chr3_1:18352457-18352476 Msa0351500:intron 35.0%
!! GATTTTTCGGAAGGAGTTAT+AGG - chr3_1:18352487-18352506 Msa0351500:intron 35.0%
ATGAATAGAATAATCTGCCG+TGG - chr3_1:18352528-18352547 Msa0351500:intron 35.0%
TACTCTAGACTTGATTGAGA+GGG - chr3_1:18352585-18352604 Msa0351500:intron 35.0%
AAAGCTGTTCCTATCACTTT+AGG + chr3_1:18352662-18352681 None:intergenic 35.0%
AAAGTGATAGGAACAGCTTT+AGG - chr3_1:18352662-18352681 Msa0351500:intron 35.0%
! GATTATATATGGACTGCTGT+TGG - chr3_1:18352684-18352703 Msa0351500:intron 35.0%
!! TGTTGGTTTCTAGCAGAATA+AGG - chr3_1:18352701-18352720 Msa0351500:intron 35.0%
AGGCTCTTCAAACATATTGT+GGG + chr3_1:18352812-18352831 None:intergenic 35.0%
AAGGCTCTTCAAACATATTG+TGG + chr3_1:18352813-18352832 None:intergenic 35.0%
ATGAAGACAATTAGTGTGTG+TGG - chr3_1:18352906-18352925 Msa0351500:intron 35.0%
AACAGCGAATCAGATCAATA+TGG + chr3_1:18352986-18353005 None:intergenic 35.0%
TTGTAACCACTCAATGGTTA+AGG + chr3_1:18353217-18353236 None:intergenic 35.0%
TGCAAATTGTAACCACTCAA+TGG + chr3_1:18353223-18353242 None:intergenic 35.0%
!! GAATAGCTGTATTCTAAAGC+AGG - chr3_1:18353469-18353488 Msa0351500:intron 35.0%
ATTAATGTTGCTGCTGATGT+TGG - chr3_1:18353503-18353522 Msa0351500:intron 35.0%
! TTCGAGTGAACCATTCTTTT+AGG - chr3_1:18353685-18353704 Msa0351500:intron 35.0%
CATAATATTCTCGGACTCAA+AGG + chr3_1:18353748-18353767 None:intergenic 35.0%
GACCCCAAAAAATTATTGAG+TGG - chr3_1:18353804-18353823 Msa0351500:intron 35.0%
!!! GGCCACTCAATAATTTTTTG+GGG + chr3_1:18353809-18353828 None:intergenic 35.0%
!!! CTGGCCACTCAATAATTTTT+TGG + chr3_1:18353811-18353830 None:intergenic 35.0%
AAAAATTATTGAGTGGCCAG+TGG - chr3_1:18353811-18353830 Msa0351500:intron 35.0%
AAAATTATTGAGTGGCCAGT+GGG - chr3_1:18353812-18353831 Msa0351500:intron 35.0%
!!! AGTTTTGGTTGCAGGATTTT+AGG - chr3_1:18353867-18353886 Msa0351500:intron 35.0%
!!! ATATCTGGAGGTTACTTTTC+CGG - chr3_1:18354061-18354080 Msa0351500:intron 35.0%
AAACAGCCTCTTTCTCATTA+GGG + chr3_1:18354253-18354272 None:intergenic 35.0%
TAAACAGCCTCTTTCTCATT+AGG + chr3_1:18354254-18354273 None:intergenic 35.0%
AATGAGAAAGAGGCTGTTTA+TGG - chr3_1:18354254-18354273 Msa0351500:CDS 35.0%
! TTTATGGAGCGTTAGACATA+TGG - chr3_1:18354270-18354289 Msa0351500:CDS 35.0%
! GAAGGTAATTTTATAGCCCT+GGG + chr3_1:18354454-18354473 None:intergenic 35.0%
! AGAAGGTAATTTTATAGCCC+TGG + chr3_1:18354455-18354474 None:intergenic 35.0%
! GAAGGTAATTTTATAGCCCT+GGG + chr3_1:18354454-18354473 None:intergenic 35.0%
! AGAAGGTAATTTTATAGCCC+TGG + chr3_1:18354455-18354474 None:intergenic 35.0%
! ACAATGTTCATGTTGATGGA+TGG + chr3_1:18354801-18354820 None:intergenic 35.0%
AGGAATGGTTAGAATCTCAT+TGG - chr3_1:18355011-18355030 Msa0351500:intron 35.0%
TATACTTTCAGTTAGCCAAG+TGG - chr3_1:18355047-18355066 Msa0351500:intron 35.0%
ACTTCTTCTGGCATTTGATA+TGG - chr3_1:18355114-18355133 Msa0351500:intron 35.0%
! TGTCTAAGAGACTGTTTTCT+AGG - chr3_1:18355200-18355219 Msa0351500:intron 35.0%
TAGATCTTGATCAAACAGTC+TGG + chr3_1:18355370-18355389 None:intergenic 35.0%
! GCCATTCGATCTTGATTTTT+CGG - chr3_1:18355442-18355461 Msa0351500:intron 35.0%
ACCGAAAAATCAAGATCGAA+TGG + chr3_1:18355446-18355465 None:intergenic 35.0%
ATCTAGATTCCATGCAATCA+GGG + chr3_1:18355501-18355520 None:intergenic 35.0%
AGTTTAGGTATTTGCAGACA+TGG - chr3_1:18355612-18355631 Msa0351500:intron 35.0%
!! TTCTTGGCCTAGTTTTCTAA+AGG + chr3_1:18355689-18355708 None:intergenic 35.0%
! CCAATTTCCTTTTCTCTTCT+TGG + chr3_1:18355705-18355724 None:intergenic 35.0%
CCAAGAAGAGAAAAGGAAAT+TGG - chr3_1:18355702-18355721 Msa0351500:intron 35.0%
! TCAAACGATATGGCCTTAAA+TGG - chr3_1:18355728-18355747 Msa0351500:intron 35.0%
TATTCACTTCAATGGTGAAC+GGG - chr3_1:18355756-18355775 Msa0351500:intron 35.0%
TTCGTTAAAGTTGAGTCGAT+TGG - chr3_1:18355940-18355959 Msa0351500:CDS 35.0%
TCGTTAAAGTTGAGTCGATT+GGG - chr3_1:18355941-18355960 Msa0351500:CDS 35.0%
!!! GTTTTAATCTTCTGGTTCTC+GGG + chr3_1:18355984-18356003 None:intergenic 35.0%
TAGTTCAACTCATGGTTGAT+AGG + chr3_1:18356079-18356098 None:intergenic 35.0%
! ACCATGAGTTGAACTACATT+TGG - chr3_1:18356083-18356102 Msa0351500:intron 35.0%
! CCATGAGTTGAACTACATTT+GGG - chr3_1:18356084-18356103 Msa0351500:intron 35.0%
! CATGAGTTGAACTACATTTG+GGG - chr3_1:18356085-18356104 Msa0351500:intron 35.0%
! ATGAGTTGAACTACATTTGG+GGG - chr3_1:18356086-18356105 Msa0351500:intron 35.0%
! TTTTCCCACCTTTGTGGTTT+TGG + chr3_1:18350103-18350122 None:intergenic 40.0%
GAAACAAAAGGAGCTAGTAG+AGG - chr3_1:18350182-18350201 Msa0351500:three_prime_UTR 40.0%
CACAGACGAGATTAAGAAGA+AGG - chr3_1:18350208-18350227 Msa0351500:three_prime_UTR 40.0%
AAATGCAACAAGTGGCAACT+GGG + chr3_1:18350471-18350490 None:intergenic 40.0%
AAAATGCAACAAGTGGCAAC+TGG + chr3_1:18350472-18350491 None:intergenic 40.0%
CCACACAAAAATGCAACAAG+TGG + chr3_1:18350479-18350498 None:intergenic 40.0%
!! CCACTTGTTGCATTTTTGTG+TGG - chr3_1:18350476-18350495 Msa0351500:CDS 40.0%
! ATTTTTGTGTGGGTGTGTAG+AGG - chr3_1:18350487-18350506 Msa0351500:CDS 40.0%
GATACATAAACACCGATAGG+TGG + chr3_1:18350519-18350538 None:intergenic 40.0%
GCTGATACATAAACACCGAT+AGG + chr3_1:18350522-18350541 None:intergenic 40.0%
CCAACTGAGCTAAATTTACG+AGG + chr3_1:18350751-18350770 None:intergenic 40.0%
! CCTCGTAAATTTAGCTCAGT+TGG - chr3_1:18350748-18350767 Msa0351500:intron 40.0%
TACGAGAGAAGGAAAAAACC+TGG + chr3_1:18350977-18350996 None:intergenic 40.0%
TAAGCGCAATAGCACAACAT+TGG - chr3_1:18351061-18351080 Msa0351500:CDS 40.0%
! AGAGTTTTTGACAACTGCCA+TGG - chr3_1:18351118-18351137 Msa0351500:intron 40.0%
GGTTTATCACAAATTGGCCA+TGG + chr3_1:18351138-18351157 None:intergenic 40.0%
ATATCTGGTATAAAACGCCG+TGG + chr3_1:18351170-18351189 None:intergenic 40.0%
ATTGATTGTGGATGGAGGAA+AGG + chr3_1:18351218-18351237 None:intergenic 40.0%
! GGTGGAAAAGCGTACTAAAA+TGG - chr3_1:18351309-18351328 Msa0351500:intron 40.0%
! GGAAAAGCGTACTAAAATGG+CGG - chr3_1:18351312-18351331 Msa0351500:intron 40.0%
GTCTGATGCAAGCTACAATT+TGG + chr3_1:18351364-18351383 None:intergenic 40.0%
TTTCGAGATAGTGATGCTGT+CGG + chr3_1:18351388-18351407 None:intergenic 40.0%
! CATGTCCTTTGTAGGAGTAT+TGG + chr3_1:18351455-18351474 None:intergenic 40.0%
ACTCCTACAAAGGACATGTT+TGG - chr3_1:18351457-18351476 Msa0351500:intron 40.0%
GTCTGCGAGAAAAGAAGATA+AGG + chr3_1:18351556-18351575 None:intergenic 40.0%
TTTCGATCGGATAACTTTGC+AGG + chr3_1:18351740-18351759 None:intergenic 40.0%
TTGAGTCTGAATGTTGTTGG+TGG - chr3_1:18351760-18351779 Msa0351500:intron 40.0%
GTTGTATACCCGGAAAAAAC+TGG - chr3_1:18352133-18352152 Msa0351500:intron 40.0%
CTAAAGTGCGAGTAAAGCTT+TGG - chr3_1:18352157-18352176 Msa0351500:intron 40.0%
!! AGTCATGTATGGCCTTGTAT+AGG + chr3_1:18352209-18352228 None:intergenic 40.0%
GTGATGAATAGACCAGTGAA+AGG - chr3_1:18352338-18352357 Msa0351500:intron 40.0%
TATGGTCTGGAAAGGATGAA+TGG - chr3_1:18352465-18352484 Msa0351500:intron 40.0%
!! GGATGAATGGATTTTTCGGA+AGG - chr3_1:18352478-18352497 Msa0351500:intron 40.0%
! TTTTCGGAAGGAGTTATAGG+TGG - chr3_1:18352490-18352509 Msa0351500:intron 40.0%
!! TAACTCATTGGCTTTGTCCA+CGG + chr3_1:18352548-18352567 None:intergenic 40.0%
GACAAAGCCAATGAGTTAGA+TGG - chr3_1:18352550-18352569 Msa0351500:intron 40.0%
TCTTCAGCCATCTAACTCAT+TGG + chr3_1:18352560-18352579 None:intergenic 40.0%
CTACTCTAGACTTGATTGAG+AGG - chr3_1:18352584-18352603 Msa0351500:intron 40.0%
!! TTTGGCCAAGTTGATAAGGA+TGG - chr3_1:18352626-18352645 Msa0351500:intron 40.0%
AAAGTAACATGTATCCCCAC+AGG - chr3_1:18352943-18352962 Msa0351500:intron 40.0%
AGATCAATATGGACTCTTCC+TGG + chr3_1:18352975-18352994 None:intergenic 40.0%
CTAATGCTCACTTCTCTCTT+TGG + chr3_1:18353144-18353163 None:intergenic 40.0%
GAGAGAAGTGAGCATTAGAA+TGG - chr3_1:18353146-18353165 Msa0351500:intron 40.0%
GTGAGCATTAGAATGGAAAG+AGG - chr3_1:18353153-18353172 Msa0351500:intron 40.0%
AGAATGGAAAGAGGACAGTA+AGG - chr3_1:18353162-18353181 Msa0351500:intron 40.0%
CTGCAAACAATAGATGTGAG+TGG - chr3_1:18353187-18353206 Msa0351500:intron 40.0%
GTTAATCTTGCCTAGATTGG+TGG - chr3_1:18353250-18353269 Msa0351500:intron 40.0%
TGAGCAAGTCATCGTGTTAT+AGG + chr3_1:18353299-18353318 None:intergenic 40.0%
TGCTCAAGAGTCATCATATC+AGG - chr3_1:18353313-18353332 Msa0351500:intron 40.0%
GCTCAAGAGTCATCATATCA+GGG - chr3_1:18353314-18353333 Msa0351500:intron 40.0%
CCATCAGAATCAGCAAAGAT+TGG + chr3_1:18353420-18353439 None:intergenic 40.0%
!! CCAATCTTTGCTGATTCTGA+TGG - chr3_1:18353417-18353436 Msa0351500:intron 40.0%
ACCACAATTACCAGAGAAGT+GGG - chr3_1:18353601-18353620 Msa0351500:intron 40.0%
AATATTGGTACCCACTTCTC+TGG + chr3_1:18353614-18353633 None:intergenic 40.0%
!!! AGGTGGTTTTAGGTATCAGA+TGG + chr3_1:18353659-18353678 None:intergenic 40.0%
TATGCAGAAGACTCAGAAAG+CGG - chr3_1:18353764-18353783 Msa0351500:intron 40.0%
AAATTATTGAGTGGCCAGTG+GGG - chr3_1:18353813-18353832 Msa0351500:intron 40.0%
!!! AGAGAGTTAGTTTTGGTTGC+AGG - chr3_1:18353859-18353878 Msa0351500:intron 40.0%
ACAACACGTTCTCCTGATAA+GGG + chr3_1:18354130-18354149 None:intergenic 40.0%
AACAACACGTTCTCCTGATA+AGG + chr3_1:18354131-18354150 None:intergenic 40.0%
TGAACTCCCTAATGAGAAAG+AGG - chr3_1:18354244-18354263 Msa0351500:CDS 40.0%
CCTTAGCTACTGCAATCAAT+GGG + chr3_1:18354316-18354335 None:intergenic 40.0%
GGGTTCGTGTAATTCAAGTA+CGG - chr3_1:18354366-18354385 Msa0351500:intron 40.0%
TTTCCGTACATTACATGTGG+TGG - chr3_1:18354487-18354506 Msa0351500:intron 40.0%
! CAACTTTTATGGCTCCAGTT+TGG - chr3_1:18354698-18354717 Msa0351500:intron 40.0%
TAACCAAGGTTACAAAGCAG+AGG + chr3_1:18354985-18355004 None:intergenic 40.0%
TGTAACCTTGGTTAACTGTG+AGG - chr3_1:18354991-18355010 Msa0351500:intron 40.0%
AAAGGACAAGGAGCAACAAT+GGG - chr3_1:18355079-18355098 Msa0351500:intron 40.0%
AACATACGACACACTTCTTC+TGG - chr3_1:18355102-18355121 Msa0351500:intron 40.0%
TATGGAACAGAGAGTAGATG+AGG - chr3_1:18355132-18355151 Msa0351500:intron 40.0%
! TTGACTGCGAATTTTCACTC+GGG + chr3_1:18355342-18355361 None:intergenic 40.0%
! CTTGACTGCGAATTTTCACT+CGG + chr3_1:18355343-18355362 None:intergenic 40.0%
TCTAGATTCCATGCAATCAG+GGG + chr3_1:18355500-18355519 None:intergenic 40.0%
GATCTAGATTCCATGCAATC+AGG + chr3_1:18355502-18355521 None:intergenic 40.0%
TTAGGTATTTGCAGACATGG+AGG - chr3_1:18355615-18355634 Msa0351500:intron 40.0%
AACCTGATGAAGATACAGTC+AGG - chr3_1:18355650-18355669 Msa0351500:intron 40.0%
TTCCTGACTGTATCTTCATC+AGG + chr3_1:18355655-18355674 None:intergenic 40.0%
TGAAGATACAGTCAGGAAAG+TGG - chr3_1:18355657-18355676 Msa0351500:intron 40.0%
! GCAAGTGCCTTTAGAAAACT+AGG - chr3_1:18355679-18355698 Msa0351500:intron 40.0%
AACTAGGCCAAGAAGAGAAA+AGG - chr3_1:18355695-18355714 Msa0351500:intron 40.0%
TGAGAGTTAGAACACATGCA+TGG - chr3_1:18355779-18355798 Msa0351500:intron 40.0%
GAGAGTTAGAACACATGCAT+GGG - chr3_1:18355780-18355799 Msa0351500:intron 40.0%
TTCTGCCGTTGTTGAATCAA+AGG - chr3_1:18355892-18355911 Msa0351500:CDS 40.0%
TCTGCCGTTGTTGAATCAAA+GGG - chr3_1:18355893-18355912 Msa0351500:CDS 40.0%
TCGACCCTTTGATTCAACAA+CGG + chr3_1:18355900-18355919 None:intergenic 40.0%
CCCAAATGTAGTTCAACTCA+TGG + chr3_1:18356087-18356106 None:intergenic 40.0%
ATCATCACGACGACCACTAT+CGG + chr3_1:18350294-18350313 None:intergenic 45.0%
GAAGAGAGAGACGGAAGAAA+GGG - chr3_1:18350371-18350390 Msa0351500:exon 45.0%
AAAGGGTGAAGAAAGGGTGA+AGG - chr3_1:18350402-18350421 Msa0351500:CDS 45.0%
AAGAAAGGGTGAAGGAAGAG+AGG - chr3_1:18350410-18350429 Msa0351500:CDS 45.0%
GTGAAGGAAGAGAGGAGAAA+TGG - chr3_1:18350418-18350437 Msa0351500:CDS 45.0%
! CTGGCTGAGTTTTCGTTATC+CGG + chr3_1:18350946-18350965 None:intergenic 45.0%
ATCTGAGGGGTTATTTGCAG+TGG - chr3_1:18351094-18351113 Msa0351500:CDS 45.0%
GGCCAATTTGTGATAAACCC+CGG - chr3_1:18351139-18351158 Msa0351500:intron 45.0%
CACCGGGGTTTATCACAAAT+TGG + chr3_1:18351144-18351163 None:intergenic 45.0%
CAATTTGTGATAAACCCCGG+TGG - chr3_1:18351142-18351161 Msa0351500:intron 45.0%
! TTGTTGTTGGACAGGTATGG+TGG - chr3_1:18351284-18351303 Msa0351500:intron 45.0%
AAAGCGTACTAAAATGGCGG+AGG - chr3_1:18351315-18351334 Msa0351500:intron 45.0%
!! TGTTGGTGGTTCTGTTGAGA+AGG - chr3_1:18351774-18351793 Msa0351500:intron 45.0%
AGAAGAGATTCAGCTCAGTC+TGG - chr3_1:18351934-18351953 Msa0351500:intron 45.0%
! TGACAAGAGTGAGTGCCTTT+TGG + chr3_1:18351960-18351979 None:intergenic 45.0%
CTTGTATAGGTTCCACAGCT+TGG + chr3_1:18352196-18352215 None:intergenic 45.0%
CAAGCTGTGGAACCTATACA+AGG - chr3_1:18352194-18352213 Msa0351500:intron 45.0%
ATAGACCAGTGAAAGGCGAA+AGG - chr3_1:18352345-18352364 Msa0351500:intron 45.0%
CTATTCCTTTCGCCTTTCAC+TGG + chr3_1:18352353-18352372 None:intergenic 45.0%
GAAGGAGTTATAGGTGGTGA+AGG - chr3_1:18352496-18352515 Msa0351500:intron 45.0%
!! CTGGTTTGGCCAAGTTGATA+AGG - chr3_1:18352622-18352641 Msa0351500:intron 45.0%
TCTTCCTGGTACAATCCTGT+GGG + chr3_1:18352961-18352980 None:intergenic 45.0%
GGTGAACCTTAACCATTGAG+TGG - chr3_1:18353208-18353227 Msa0351500:intron 45.0%
TCATCATATCAGGGTCGAGT+TGG - chr3_1:18353323-18353342 Msa0351500:intron 45.0%
!! CATGTGCCATTTGAGATGAC+TGG - chr3_1:18353366-18353385 Msa0351500:intron 45.0%
! TGCCATTTGAGATGACTGGT+GGG - chr3_1:18353370-18353389 Msa0351500:intron 45.0%
! CAAAGATTGGTTCCTTGCCA+AGG + chr3_1:18353407-18353426 None:intergenic 45.0%
!! TGCTGCTGATGTTGGTAATC+AGG - chr3_1:18353511-18353530 Msa0351500:intron 45.0%
!! GCTGCTGATGTTGGTAATCA+GGG - chr3_1:18353512-18353531 Msa0351500:intron 45.0%
TGGGCATAGTCACAGGTATA+GGG + chr3_1:18353571-18353590 None:intergenic 45.0%
TTGGGCATAGTCACAGGTAT+AGG + chr3_1:18353572-18353591 None:intergenic 45.0%
GATTCATTGGGCATAGTCAC+AGG + chr3_1:18353578-18353597 None:intergenic 45.0%
GACCACAATTACCAGAGAAG+TGG - chr3_1:18353600-18353619 Msa0351500:intron 45.0%
ACCCACTTCTCTGGTAATTG+TGG + chr3_1:18353605-18353624 None:intergenic 45.0%
! CGAACAGTACAGGTGGTTTT+AGG + chr3_1:18353669-18353688 None:intergenic 45.0%
ATGGTTCACTCGAACAGTAC+AGG + chr3_1:18353679-18353698 None:intergenic 45.0%
ATGCAGAAGACTCAGAAAGC+GGG - chr3_1:18353765-18353784 Msa0351500:intron 45.0%
CAGTGCAGCACATAACATCA+TGG + chr3_1:18353910-18353929 None:intergenic 45.0%
GTGCAATCCAAACCCTTATC+AGG - chr3_1:18354115-18354134 Msa0351500:intron 45.0%
ACGTTCTCCTGATAAGGGTT+TGG + chr3_1:18354125-18354144 None:intergenic 45.0%
! TGGAGCGTTAGACATATGGA+CGG - chr3_1:18354274-18354293 Msa0351500:CDS 45.0%
CAATGGGAACTCTATTTCCC+AGG + chr3_1:18354300-18354319 None:intergenic 45.0%
! CCCATTGATTGCAGTAGCTA+AGG - chr3_1:18354313-18354332 Msa0351500:intron 45.0%
GCCTTAGCTACTGCAATCAA+TGG + chr3_1:18354317-18354336 None:intergenic 45.0%
TCTTAAGGAAAAGGGCTCAG+TGG - chr3_1:18354345-18354364 Msa0351500:intron 45.0%
CTTAAGGAAAAGGGCTCAGT+GGG - chr3_1:18354346-18354365 Msa0351500:intron 45.0%
GCTCCACCACATGTAATGTA+CGG + chr3_1:18354493-18354512 None:intergenic 45.0%
CCTCGATAGCATTCTTGAGA+AGG + chr3_1:18354829-18354848 None:intergenic 45.0%
CCTTCTCAAGAATGCTATCG+AGG - chr3_1:18354826-18354845 Msa0351500:intron 45.0%
GTACCTCTGCTTTGTAACCT+TGG - chr3_1:18354979-18354998 Msa0351500:intron 45.0%
CCATTCCTCACAGTTAACCA+AGG + chr3_1:18354999-18355018 None:intergenic 45.0%
CCTTGGTTAACTGTGAGGAA+TGG - chr3_1:18354996-18355015 Msa0351500:intron 45.0%
TCCTTTGCTCAACATCCACT+TGG + chr3_1:18355065-18355084 None:intergenic 45.0%
TGGATGTTGAGCAAAGGACA+AGG - chr3_1:18355067-18355086 Msa0351500:intron 45.0%
CAAAGGACAAGGAGCAACAA+TGG - chr3_1:18355078-18355097 Msa0351500:intron 45.0%
TAGATGAGGCAGAATCCTTG+TGG - chr3_1:18355146-18355165 Msa0351500:intron 45.0%
! TGACTGCGAATTTTCACTCG+GGG + chr3_1:18355341-18355360 None:intergenic 45.0%
CTAGATTCCATGCAATCAGG+GGG + chr3_1:18355499-18355518 None:intergenic 45.0%
AATCAAAGGGTCGAGTGCAA+AGG - chr3_1:18355906-18355925 Msa0351500:CDS 45.0%
!!! TAAATATGATTTTTTTTTTT+TGG + chr3_1:18351642-18351661 None:intergenic 5.0%
! GAATTTTCGGCTGCCGATAG+TGG - chr3_1:18350278-18350297 Msa0351500:three_prime_UTR 50.0%
AGGGTGAAGGAAGAGAGAGA+CGG - chr3_1:18350362-18350381 Msa0351500:exon 50.0%
GGAAGAGAGAGACGGAAGAA+AGG - chr3_1:18350370-18350389 Msa0351500:exon 50.0%
TTTGTGTGGGTGTGTAGAGG+TGG - chr3_1:18350490-18350509 Msa0351500:CDS 50.0%
TAGAGGTGGATGCCACCTAT+CGG - chr3_1:18350504-18350523 Msa0351500:CDS 50.0%
ACTCAGCCAGAAAGTCTTCC+AGG - chr3_1:18350956-18350975 Msa0351500:CDS 50.0%
! TGTTGGACAGGTATGGTGGA+TGG - chr3_1:18351288-18351307 Msa0351500:intron 50.0%
TTCAGCTCAGTCTGGCCAAA+AGG - chr3_1:18351942-18351961 Msa0351500:intron 50.0%
GCGTCTTTCATTCCAAGCTG+TGG - chr3_1:18352181-18352200 Msa0351500:intron 50.0%
GGAGTTATAGGTGGTGAAGG+AGG - chr3_1:18352499-18352518 Msa0351500:intron 50.0%
ACTTGAGAGACCAGCTGGTT+TGG - chr3_1:18352608-18352627 Msa0351500:intron 50.0%
ATCAACTTGGCCAAACCAGC+TGG + chr3_1:18352621-18352640 None:intergenic 50.0%
TATCCCCACAGGATTGTACC+AGG - chr3_1:18352954-18352973 Msa0351500:intron 50.0%
CTTCCTGGTACAATCCTGTG+GGG + chr3_1:18352960-18352979 None:intergenic 50.0%
CTCTTCCTGGTACAATCCTG+TGG + chr3_1:18352962-18352981 None:intergenic 50.0%
! CCTAGATTGGTGGCATCCAT+GGG - chr3_1:18353260-18353279 Msa0351500:intron 50.0%
TGGCATCCATGGGATGTTGT+GGG - chr3_1:18353270-18353289 Msa0351500:intron 50.0%
!! GTGCCATTTGAGATGACTGG+TGG - chr3_1:18353369-18353388 Msa0351500:intron 50.0%
! GCCATTTGAGATGACTGGTG+GGG - chr3_1:18353371-18353390 Msa0351500:intron 50.0%
GCATAGTCACAGGTATAGGG+TGG + chr3_1:18353568-18353587 None:intergenic 50.0%
GTTCACTCGAACAGTACAGG+TGG + chr3_1:18353676-18353695 None:intergenic 50.0%
! AGAAAGCGGGCTTGCTTTGA+AGG - chr3_1:18353778-18353797 Msa0351500:intron 50.0%
GTTAGACATATGGACGGCCT+GGG - chr3_1:18354280-18354299 Msa0351500:CDS 50.0%
!! TCACCGACTTGTAAATGCCC+AGG - chr3_1:18354434-18354453 Msa0351500:CDS 50.0%
!! CACCGACTTGTAAATGCCCA+GGG - chr3_1:18354435-18354454 Msa0351500:CDS 50.0%
AGCCCTGGGCATTTACAAGT+CGG + chr3_1:18354440-18354459 None:intergenic 50.0%
TGGTGGAGCTTAAATGCCCA+GGG - chr3_1:18354504-18354523 Msa0351500:intron 50.0%
GCCAAGTGGATGTTGAGCAA+AGG - chr3_1:18355061-18355080 Msa0351500:intron 50.0%
CTTAGACACAGAGCGCATGT+GGG + chr3_1:18355188-18355207 None:intergenic 50.0%
TCTTAGACACAGAGCGCATG+TGG + chr3_1:18355189-18355208 None:intergenic 50.0%
AGATCTAACGGCTCATGCTC+TGG - chr3_1:18355383-18355402 Msa0351500:intron 50.0%
TTGCAGACATGGAGGAGTTG+CGG - chr3_1:18355623-18355642 Msa0351500:intron 50.0%
TGGTTCTCGGGAAACGAAGT+CGG + chr3_1:18355972-18355991 None:intergenic 50.0%
GTCGTCGTGATGATAGACGC+CGG - chr3_1:18350300-18350319 Msa0351500:three_prime_UTR 55.0%
TGGAGTGGGAGAAAGGGTGA+AGG - chr3_1:18350349-18350368 Msa0351500:three_prime_UTR 55.0%
ATAAAACGCCGTGGCACCAC+CGG + chr3_1:18351161-18351180 None:intergenic 55.0%
!! TGGACAGGTATGGTGGATGG+TGG - chr3_1:18351291-18351310 Msa0351500:intron 55.0%
! GCCTAGATTGGTGGCATCCA+TGG - chr3_1:18353259-18353278 Msa0351500:intron 55.0%
CCCATGGATGCCACCAATCT+AGG + chr3_1:18353263-18353282 None:intergenic 55.0%
GTGGCATCCATGGGATGTTG+TGG - chr3_1:18353269-18353288 Msa0351500:intron 55.0%
AGGTGACCCACAACATCCCA+TGG + chr3_1:18353279-18353298 None:intergenic 55.0%
!! GGGTCGAGTTGGTTGTGCAA+CGG - chr3_1:18353334-18353353 Msa0351500:intron 55.0%
GCCCCACCAGTCATCTCAAA+TGG + chr3_1:18353375-18353394 None:intergenic 55.0%
GGCTGATGTGATCCTTGGCA+AGG - chr3_1:18353392-18353411 Msa0351500:intron 55.0%
TTATTGAGTGGCCAGTGGGG+TGG - chr3_1:18353816-18353835 Msa0351500:intron 55.0%
TATTGAGTGGCCAGTGGGGT+GGG - chr3_1:18353817-18353836 Msa0351500:intron 55.0%
ATAAACTCCTCCCACCCCAC+TGG + chr3_1:18353830-18353849 None:intergenic 55.0%
CGTTAGACATATGGACGGCC+TGG - chr3_1:18354279-18354298 Msa0351500:CDS 55.0%
! GTGGTGGAGCTTAAATGCCC+AGG - chr3_1:18354503-18354522 Msa0351500:intron 55.0%
TAACGGCTCATGCTCTGGCT+TGG - chr3_1:18355388-18355407 Msa0351500:intron 55.0%
TGCATGACCCCCTGATTGCA+TGG - chr3_1:18355489-18355508 Msa0351500:intron 55.0%
TGCAGACATGGAGGAGTTGC+GGG - chr3_1:18355624-18355643 Msa0351500:intron 55.0%
GGTTCTCGGGAAACGAAGTC+GGG + chr3_1:18355971-18355990 None:intergenic 55.0%
GTCGTGATGATAGACGCCGG+TGG - chr3_1:18350303-18350322 Msa0351500:three_prime_UTR 60.0%
GTGATGATAGACGCCGGTGG+TGG - chr3_1:18350306-18350325 Msa0351500:three_prime_UTR 60.0%
! ATAGACGCCGGTGGTGGTTG+TGG - chr3_1:18350312-18350331 Msa0351500:three_prime_UTR 60.0%
TCACCAGCCACAACCACCAC+CGG + chr3_1:18350322-18350341 None:intergenic 60.0%
GTGGTGGTTGTGGCTGGTGA+TGG - chr3_1:18350322-18350341 Msa0351500:three_prime_UTR 60.0%
!! GTGGTTGTGGCTGGTGATGG+TGG - chr3_1:18350325-18350344 Msa0351500:three_prime_UTR 60.0%
!! TTGTGGCTGGTGATGGTGGC+TGG - chr3_1:18350329-18350348 Msa0351500:three_prime_UTR 60.0%
!! CTGGTGATGGTGGCTGGAGT+GGG - chr3_1:18350335-18350354 Msa0351500:three_prime_UTR 60.0%
TGGTGGCTGGAGTGGGAGAA+AGG - chr3_1:18350342-18350361 Msa0351500:three_prime_UTR 60.0%
GGTGGCTGGAGTGGGAGAAA+GGG - chr3_1:18350343-18350362 Msa0351500:three_prime_UTR 60.0%
! GATAAACCCCGGTGGTGCCA+CGG - chr3_1:18351150-18351169 Msa0351500:intron 60.0%
TAAAACGCCGTGGCACCACC+GGG + chr3_1:18351160-18351179 None:intergenic 60.0%
GAGGGACTTGAGAGACCAGC+TGG - chr3_1:18352603-18352622 Msa0351500:intron 60.0%
GGTGGGGCTGATGTGATCCT+TGG - chr3_1:18353387-18353406 Msa0351500:intron 60.0%
!! GCTGGTGATGGTGGCTGGAG+TGG - chr3_1:18350334-18350353 Msa0351500:three_prime_UTR 65.0%
AAAACGCCGTGGCACCACCG+GGG + chr3_1:18351159-18351178 None:intergenic 65.0%
! ACGCCGGTGGTGGTTGTGGC+TGG - chr3_1:18350316-18350335 Msa0351500:three_prime_UTR 70.0%
TGAGTGGCCAGTGGGGTGGG+AGG - chr3_1:18353820-18353839 Msa0351500:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 18349944 18356246 18349944 ID=Msa0351500;Name=Msa0351500
chr3_1 mRNA 18349944 18356246 18349944 ID=Msa0351500-mRNA-1;Parent=Msa0351500;Name=Msa0351500-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.62|0.55|0.77|0.62|0.55|9|436|339
chr3_1 exon 18349944 18350571 18349944 ID=Msa0351500-mRNA-1:exon:4343;Parent=Msa0351500-mRNA-1
chr3_1 exon 18350920 18351132 18350920 ID=Msa0351500-mRNA-1:exon:4342;Parent=Msa0351500-mRNA-1
chr3_1 exon 18351817 18351951 18351817 ID=Msa0351500-mRNA-1:exon:4341;Parent=Msa0351500-mRNA-1
chr3_1 exon 18354206 18354305 18354206 ID=Msa0351500-mRNA-1:exon:4340;Parent=Msa0351500-mRNA-1
chr3_1 exon 18354390 18354466 18354390 ID=Msa0351500-mRNA-1:exon:4339;Parent=Msa0351500-mRNA-1
chr3_1 exon 18354569 18354616 18354569 ID=Msa0351500-mRNA-1:exon:4338;Parent=Msa0351500-mRNA-1
chr3_1 exon 18354712 18354818 18354712 ID=Msa0351500-mRNA-1:exon:4337;Parent=Msa0351500-mRNA-1
chr3_1 exon 18355866 18356007 18355866 ID=Msa0351500-mRNA-1:exon:4336;Parent=Msa0351500-mRNA-1
chr3_1 exon 18356241 18356246 18356241 ID=Msa0351500-mRNA-1:exon:4335;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18356241 18356246 18356241 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18355866 18356007 18355866 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18354712 18354818 18354712 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18354569 18354616 18354569 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18354390 18354466 18354390 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18354206 18354305 18354206 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18351817 18351951 18351817 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18350920 18351132 18350920 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 CDS 18350380 18350571 18350380 ID=Msa0351500-mRNA-1:cds;Parent=Msa0351500-mRNA-1
chr3_1 three_prime_UTR 18349944 18350379 18349944 ID=Msa0351500-mRNA-1:three_prime_utr;Parent=Msa0351500-mRNA-1
Gene Sequence

>Msa0351500

ATGATGAAACAAAAGGAGCTAGTAGAGGCATCACAGACGAGATTAAGAAGAAGGAATTGGAAAAAAAAAGCCAAATCTGAATCGACAGTAATAGAGCTGCAGAATTTTCGGCTGCCGATAGTGGTCGTCGTGATGATAGACGCCGGTGCTTGCATCAGACACCGACAGCATCACTATCTCGAAACAAGAACAGCAATGCCTATAACAATTGAAAGCTCAATTGTTTCACCAATACTCCTACAAAGGACATGTTTGACTAAACCGAATAAATTCTTGTCATCTGCAATAAGTATTACTCCGAAGACAAGTTGTATCTCCTGCAAAGTTATCCGATCGAAATTGAGTCTGAATGTTGTTGGTGGTTCTGTTGAGAAGGATAAAAAAGGGAAGAAGAAAAAAGGGGGTAAGATAGAACACCATTTGTGGCAAAGAAGAGATTCAGCTCAGTCTGGCCAAAAGGCACTCACTCTTGTCAGAACTATCTGTGAACTCCCTAATGAGAAAGAGGCTGTTTATGGAGCGTTAGACATATGGACGGCCTGGGAAATAGAGTTCCCATTGATTGCAGTAGCTAAGGCTTTAAAAATCTTAAGGAAAAGGGCTCAGTGGGTTCGTTTAGCCAAGTGGATGTTGAGCAAAGGACAAGGAGCAACAATGGGAACATACGACACACTTCTTCTGGCATTTGATATGGAACAGAGAGTAGATGAGGCAGAATCCTTGTGGAATATGATTATACATGCCCACATGCGCTCTGTGTCTAAGAGACTGTTTTCTAGGATGATTTCAGTGTATGATCATCATGATCTGCCAGATAAAATTATAGAGGTATTTGCAGACATGGAGGAGTTGCGGGTAAAACCTGATGAAGATACAGTCAGGAAAGTGGCAAGTGCCTTTAGAAAACTAGGCCAAGAAGAGAAAAGGAAATTGGTAATCAAACGATATGGCCTTAAATGGAAGTATATTCACTTCAATGGTGAACGGGTGAGAGTTAGAACACATGCATGGGAAGACTAA
Protein sequence

>Msa0351500

MMKQKELVEASQTRLRRRNWKKKAKSESTVIELQNFRLPIVVVVMIDAGACIRHRQHHYLETRTAMPITIESSIVSPILLQRTCLTKPNKFLSSAISITPKTSCISCKVIRSKLSLNVVGGSVEKDKKGKKKKGGKIEHHLWQRRDSAQSGQKALTLVRTICELPNEKEAVYGALDIWTAWEIEFPLIAVAKALKILRKRAQWVRLAKWMLSKGQGATMGTYDTLLLAFDMEQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHDLPDKIIEVFADMEELRVKPDEDTVRKVASAFRKLGQEEKRKLVIKRYGLKWKYIHFNGERVRVRTHAWED*