AlfalfaGEDB | Msa0849040

M. sativa cultivar zhongmu-4 / Msa0849040

KEGG: K09338
GO: -
PFAM: PF05641.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849040	XP_003614538.1	94.286	350	19	1	1	349	336	685	0.0	675

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849040	sp\|Q9FZD9\|DUF3_ARATH	33.333	147	75	4	59	199	14	143	2.57e-11	68.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849040	G7JZF1	94.286	350	19	1	1	349	336	685	0.0	675

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020410	Msa0849040	0.820103	8.185652e-53	-8.615850e-47
Msa0032470	Msa0849040	0.833738	4.488617e-56	-8.615850e-47
Msa0043980	Msa0849040	0.810473	1.132689e-50	-8.615850e-47
Msa0044000	Msa0849040	0.829239	5.752315e-55	-8.615850e-47
Msa0044330	Msa0849040	0.808403	3.151409e-50	-8.615850e-47
Msa0062490	Msa0849040	0.800539	1.374796e-48	-8.615850e-47
Msa0071250	Msa0849040	0.816831	4.515186e-52	-8.615850e-47
Msa0081620	Msa0849040	0.817109	3.909924e-52	-8.615850e-47
Msa0104230	Msa0849040	0.803227	3.854124e-49	-8.615850e-47
Msa0106850	Msa0849040	0.808966	2.388981e-50	-8.615850e-47
Msa0117520	Msa0849040	0.808285	3.338960e-50	-8.615850e-47
Msa0750850	Msa0849040	0.803625	3.187514e-49	-8.615850e-47
Msa0769970	Msa0849040	0.860810	1.593285e-63	-8.615850e-47
Msa0808080	Msa0849040	0.804153	2.476815e-49	-8.615850e-47
Msa0808100	Msa0849040	0.846094	2.694451e-59	-8.615850e-47
Msa0820850	Msa0849040	0.829980	3.799340e-55	-8.615850e-47
Msa0832340	Msa0849040	0.812162	4.870109e-51	-8.615850e-47
Msa0127800	Msa0849040	0.820609	6.266678e-53	-8.615850e-47
Msa0148080	Msa0849040	0.819506	1.120677e-52	-8.615850e-47
Msa0160960	Msa0849040	0.802432	5.625437e-49	-8.615850e-47
Msa0173960	Msa0849040	0.803612	3.208679e-49	-8.615850e-47
Msa0180510	Msa0849040	-0.810831	9.479558e-51	-8.615850e-47
Msa0219590	Msa0849040	0.811662	6.258315e-51	-8.615850e-47
Msa0376910	Msa0849040	0.809933	1.480978e-50	-8.615850e-47
Msa0389210	Msa0849040	0.809865	1.531923e-50	-8.615850e-47
Msa0398670	Msa0849040	0.824344	8.495191e-54	-8.615850e-47
Msa0261090	Msa0849040	0.833569	4.946144e-56	-8.615850e-47
Msa0278580	Msa0849040	0.811060	8.453937e-51	-8.615850e-47
Msa0280200	Msa0849040	0.809152	2.178885e-50	-8.615850e-47
Msa0287870	Msa0849040	0.811248	7.699477e-51	-8.615850e-47
Msa0305410	Msa0849040	0.841108	5.802429e-58	-8.615850e-47
Msa0316390	Msa0849040	0.824496	7.822109e-54	-8.615850e-47
Msa0317940	Msa0849040	0.816234	6.143032e-52	-8.615850e-47
Msa0342410	Msa0849040	0.802737	4.866654e-49	-8.615850e-47
Msa0363790	Msa0849040	0.800027	1.747079e-48	-8.615850e-47
Msa0530560	Msa0849040	0.839287	1.734211e-57	-8.615850e-47
Msa0542260	Msa0849040	0.825654	4.166232e-54	-8.615850e-47
Msa0849030	Msa0849040	0.828139	1.061539e-54	-8.615850e-47
Msa0849040	Msa0861130	0.822789	1.963016e-53	-8.615850e-47
Msa0849040	Msa0878220	0.826120	3.229171e-54	-8.615850e-47
Msa0849040	Msa0894710	0.816349	5.789099e-52	-8.615850e-47
Msa0849040	Msa0943970	0.805981	1.026800e-49	-8.615850e-47
Msa0849040	Msa0944020	0.823376	1.431883e-53	-8.615850e-47
Msa0849040	Msa1077130	0.802856	4.599898e-49	-8.615850e-47
Msa0849040	Msa1077200	0.802636	5.107911e-49	-8.615850e-47
Msa0849040	Msa1081790	-0.807018	6.202538e-50	-8.615850e-47
Msa0849040	Msa1089460	0.804677	1.925781e-49	-8.615850e-47
Msa0849040	Msa1109680	0.803334	3.663265e-49	-8.615850e-47
Msa0849040	Msa1117240	0.821366	4.194628e-53	-8.615850e-47
Msa0849040	Msa1176720	0.800348	1.503480e-48	-8.615850e-47
Msa0849040	Msa1207310	0.821676	3.557365e-53	-8.615850e-47
Msa0849040	Msa1236440	0.801406	9.139555e-49	-8.615850e-47
Msa0849040	Msa1238840	0.814143	1.790333e-51	-8.615850e-47
Msa0849040	Msa1257750	0.811462	6.916459e-51	-8.615850e-47
Msa0849040	Msa1271130	0.806108	9.654520e-50	-8.615850e-47
Msa0849040	Msa1277670	0.800091	1.695336e-48	-8.615850e-47
Msa0849040	Msa1280340	0.802716	4.916579e-49	-8.615850e-47
Msa0849040	Msa1297050	-0.810993	8.742020e-51	-8.615850e-47
Msa0849040	Msa1319800	0.800426	1.449471e-48	-8.615850e-47
Msa0849040	Msa1331320	0.833544	5.018274e-56	-8.615850e-47
Msa0849040	Msa1347760	0.839484	1.541777e-57	-8.615850e-47
Msa0849040	Msa1401990	0.834748	2.505090e-56	-8.615850e-47
Msa0849040	Msa1419690	0.807680	4.491492e-50	-8.615850e-47
Msa0849040	Msa1419840	0.812814	3.507255e-51	-8.615850e-47
Msa0849040	Msa1425260	0.802527	5.377453e-49	-8.615850e-47
Msa0849040	Msa1437730	0.802467	5.533999e-49	-8.615850e-47
Msa0849040	Msa1442920	0.819434	1.163730e-52	-8.615850e-47
Msa0849040	Msa1457620	0.813615	2.339558e-51	-8.615850e-47
Msa0849040	Msa1458680	0.804900	1.730013e-49	-8.615850e-47
Msa0849040	Msa1465610	-0.809678	1.680049e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849040	MtrunA17_Chr5g0423001	94.286	350	19	1	1	349	193	542	0.0	673
Msa0849040	MtrunA17_Chr3g0101951	41.758	182	103	2	55	234	395	575	1.33e-40	151
Msa0849040	MtrunA17_Chr2g0290351	39.286	196	113	3	53	244	388	581	2.94e-38	144
Msa0849040	MtrunA17_Chr1g0192961	28.834	163	98	3	44	205	8	153	4.54e-16	79.0
Msa0849040	MtrunA17_Chr1g0192961	27.869	183	109	4	56	233	181	345	1.42e-11	65.1
Msa0849040	MtrunA17_Chr1g0192931	33.113	151	76	7	52	198	55	184	6.00e-12	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849040	AT1G68580.3	44.637	289	138	10	6	282	226	504	9.54e-66	217
Msa0849040	AT1G68580.5	44.637	289	138	10	6	282	276	554	2.28e-65	217
Msa0849040	AT1G68580.2	44.637	289	138	10	6	282	322	600	7.21e-65	217
Msa0849040	AT1G68580.1	48.544	206	93	5	6	206	226	423	2.55e-56	189
Msa0849040	AT1G68580.4	48.544	206	93	5	6	206	322	519	1.56e-55	189
Msa0849040	AT5G55600.2	36.598	194	115	4	57	243	385	577	8.79e-36	137
Msa0849040	AT5G55600.1	36.598	194	115	4	57	243	385	577	8.79e-36	137
Msa0849040	AT5G55600.3	36.598	194	115	4	57	243	385	577	8.79e-36	137
Msa0849040	AT4G17330.2	31.609	174	91	6	42	199	1564	1725	5.92e-16	80.1
Msa0849040	AT4G17330.1	31.609	174	91	6	42	199	1564	1725	5.92e-16	80.1
Msa0849040	AT4G17330.3	31.609	174	91	6	42	199	1529	1690	6.36e-16	79.7
Msa0849040	AT1G26540.1	33.333	147	75	4	59	199	14	143	2.61e-12	68.6
Msa0849040	AT1G09320.1	33.136	169	84	6	40	197	26	176	3.84e-12	67.8
Msa0849040	AT1G09320.1	30.464	151	84	4	49	197	217	348	1.19e-11	66.2
Msa0849040	AT1G11420.1	34.416	154	71	7	59	205	13	143	5.32e-12	67.4

Find 130 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAACATTGGCTTTGACTTTA+GGG	0.176708	5_4:-35258446	Msa0849040:three_prime_UTR
CCAACATTGGCTTTGACTTT+AGG	0.207548	5_4:-35258447	Msa0849040:three_prime_UTR
CTTGTTACTGCTACTGGTTT+TGG	0.249736	5_4:+35259951	None:intergenic
TGAATACAATATAACAAAAC+TGG	0.279705	5_4:+35258274	None:intergenic
TAACATAGGTGCTAGTCTTT+TGG	0.285295	5_4:-35258594	Msa0849040:three_prime_UTR
GCCACTTCGATTCCTCTTCC+TGG	0.294327	5_4:+35258975	None:intergenic
CTCTGATAGTGGTCGGATCT+TGG	0.309438	5_4:+35259546	None:intergenic
ACCTGTGGTACCTGATGATC+TGG	0.312493	5_4:-35259590	Msa0849040:CDS
TTTGCTGTCCTCAGATTTGC+AGG	0.317388	5_4:+35259146	None:intergenic
CTCTTTGATTGTGGCCAACT+TGG	0.341106	5_4:+35259897	None:intergenic
CTCCAACTTGTTACTGCTAC+TGG	0.349762	5_4:+35259945	None:intergenic
GATGATGCCTGCATAAGTTT+TGG	0.351627	5_4:-35258496	Msa0849040:three_prime_UTR
GGCAGGACTGTTTAACTTAG+TGG	0.355651	5_4:-35258475	Msa0849040:three_prime_UTR
GGTGCAATATCACGACATTC+AGG	0.372888	5_4:-35259752	Msa0849040:CDS
GGTAAAACTTATATTATCAT+TGG	0.379879	5_4:+35258377	None:intergenic
GTTGGAGGGTTCCGTAAAAC+TGG	0.383030	5_4:-35259929	Msa0849040:CDS
ACTTGAGGCATTCTCGAGAT+TGG	0.385275	5_4:-35259251	Msa0849040:CDS
TCTCAAGACAGTGGGATTAG+AGG	0.387259	5_4:-35259823	Msa0849040:CDS
AAAACATCCTTCACAAGATC+TGG	0.403992	5_4:+35259024	None:intergenic
ACTAAAACAAGATAACTAGA+AGG	0.407365	5_4:+35258567	None:intergenic
AGGCATCATCCTTGCTTCCT+AGG	0.410713	5_4:+35258509	None:intergenic
GAAGAACCCGAGTAAGTATC+AGG	0.414293	5_4:+35259081	None:intergenic
GGCATCATCCTTGCTTCCTA+GGG	0.416742	5_4:+35258510	None:intergenic
AAATCAACTGTAGCATCTAT+TGG	0.423474	5_4:-35259126	Msa0849040:CDS
GCCCATGCATTGTGTAACTT+TGG	0.423958	5_4:-35258400	Msa0849040:three_prime_UTR
AAAAGACTAGCACCTATGTT+AGG	0.430605	5_4:+35258596	None:intergenic
TTCATTTGTCTCTTTGATTG+TGG	0.435179	5_4:+35259888	None:intergenic
TTTGATTGTGGCCAACTTGG+TGG	0.435610	5_4:+35259900	None:intergenic
AAATATCATGTTTATTTCCC+AGG	0.439067	5_4:-35259421	Msa0849040:intron
TGTGGTTCCAGCTTCATTGA+AGG	0.440047	5_4:-35258869	Msa0849040:CDS
TTGGTTACATTGTTGATGCC+TGG	0.452161	5_4:-35259495	Msa0849040:CDS
CAAATAAAATGAGGCTCTGA+TGG	0.454014	5_4:+35258536	None:intergenic
ATTCCACGTTTCTCTGATAG+TGG	0.459062	5_4:+35259535	None:intergenic
TGATCAACCTTCAATGAAGC+TGG	0.476443	5_4:+35258862	None:intergenic
AGGCATTCTCGAGATTGGAC+AGG	0.478147	5_4:-35259246	Msa0849040:CDS
GCACGACTGAGGAACTGAAA+AGG	0.478755	5_4:+35258809	None:intergenic
TTACTCGGGTTCTTCTGAAA+AGG	0.491451	5_4:-35259073	Msa0849040:CDS
GACAGGGAATGGATGGGTAA+AGG	0.496000	5_4:-35259229	Msa0849040:CDS
GCAATACAAGTCACAACATC+AGG	0.497975	5_4:+35259195	None:intergenic
TCTCGAGATTGGACAGGGAA+TGG	0.498663	5_4:-35259240	Msa0849040:CDS
GGCCAAAGTTACACAATGCA+TGG	0.499526	5_4:+35258398	None:intergenic
AAGAAAACAAGGCACAAGAA+AGG	0.500054	5_4:+35258356	None:intergenic
GCTTCACAGTATTTAGCTGT+AGG	0.501148	5_4:-35259865	Msa0849040:CDS
GAGATTGGACAGGGAATGGA+TGG	0.504271	5_4:-35259236	Msa0849040:CDS
TTGGAGATGGAATACAATCT+AGG	0.504917	5_4:-35259107	Msa0849040:CDS
ACTCGGAGACCCAGATCATC+AGG	0.505580	5_4:+35259580	None:intergenic
CGAGAATGCCTCAAGTTACA+TGG	0.511581	5_4:+35259258	None:intergenic
CACGACTGAGGAACTGAAAA+GGG	0.511638	5_4:+35258810	None:intergenic
AGCTGTAGGTTCCAATGTTG+AGG	0.516100	5_4:-35259851	Msa0849040:CDS
CTTAGTGGAATAACCAACAT+TGG	0.520340	5_4:-35258460	Msa0849040:three_prime_UTR
ATTGTATCAAGTCAGCATTA+CGG	0.525839	5_4:+35258200	None:intergenic
GAATGGATGGGTAAAGGTGA+GGG	0.525927	5_4:-35259223	Msa0849040:CDS
AGTTAAGGTGGAAGTCATCC+AGG	0.525937	5_4:-35258993	Msa0849040:CDS
AATACTGTGTTTCTGCTAAG+TGG	0.527557	5_4:+35258691	None:intergenic
CACGTTTCTCTGATAGTGGT+CGG	0.528328	5_4:+35259539	None:intergenic
ACGTGTGATAAGATAACAAA+GGG	0.532839	5_4:+35258311	None:intergenic
GAATACAATATAACAAAACT+GGG	0.533135	5_4:+35258275	None:intergenic
TCTTGGTCCTCGCATCTACT+CGG	0.537563	5_4:+35259563	None:intergenic
ACTGTAGCATCTATTGGAGA+TGG	0.537924	5_4:-35259120	Msa0849040:CDS
CTAGGGCTTCAAATAAAATG+AGG	0.538796	5_4:+35258527	None:intergenic
TGGCATGATGGATGGTGGGA+AGG	0.540826	5_4:-35259472	Msa0849040:CDS
ATGCCTGGTGGCATGATGGA+TGG	0.541595	5_4:-35259480	Msa0849040:CDS
AGTCCTGCCAAAACTTATGC+AGG	0.544229	5_4:+35258489	None:intergenic
CCACCATCCATCATGCCACC+AGG	0.546255	5_4:+35259477	None:intergenic
CCCAGATCATCAGGTACCAC+AGG	0.548955	5_4:+35259589	None:intergenic
ATTTGAAGCCCTAGGAAGCA+AGG	0.551675	5_4:-35258518	Msa0849040:three_prime_UTR
TAGGCAGCCTGATACTTACT+CGG	0.552436	5_4:-35259088	Msa0849040:CDS
ATACTGTGTTTCTGCTAAGT+GGG	0.556829	5_4:+35258692	None:intergenic
GGCATTCTCGAGATTGGACA+GGG	0.564326	5_4:-35259245	Msa0849040:CDS
CCTGGTGGCATGATGGATGG+TGG	0.564674	5_4:-35259477	Msa0849040:CDS
GCCAAAGTTACACAATGCAT+GGG	0.565270	5_4:+35258399	None:intergenic
TGACGAAACCATGAGAAAAG+AGG	0.568102	5_4:+35258630	None:intergenic
ATTGGCTTTGACTTTAGGGA+TGG	0.568643	5_4:-35258442	Msa0849040:three_prime_UTR
GGTGGAAGTCATCCAGGAAG+AGG	0.569070	5_4:-35258987	Msa0849040:CDS
AACCAGTAGCAGTAACAAGT+TGG	0.570662	5_4:-35259947	Msa0849040:CDS
GATGGGTAAAGGTGAGGGAA+AGG	0.570981	5_4:-35259218	Msa0849040:CDS
CCTAAAGTCAAAGCCAATGT+TGG	0.571783	5_4:+35258447	None:intergenic
CTGGTGGCATGATGGATGGT+GGG	0.572784	5_4:-35259476	Msa0849040:CDS
GGAATGGATGGGTAAAGGTG+AGG	0.573465	5_4:-35259224	Msa0849040:CDS
GCATCAGACTGCAGAAACTT+CGG	0.573906	5_4:+35258904	None:intergenic
ATGCATGGGCTTGCAAACAA+TGG	0.574458	5_4:+35258413	None:intergenic
TTGAGAGAGGACCTCAACAT+TGG	0.574826	5_4:+35259840	None:intergenic
AACAGAGCAATGACATACAT+AGG	0.575434	5_4:-35258936	Msa0849040:CDS
GAGGGTTCCGTAAAACTGGT+TGG	0.578848	5_4:-35259925	Msa0849040:CDS
GTTGATGCCTGGTGGCATGA+TGG	0.579936	5_4:-35259484	Msa0849040:CDS
ATGAGAAAAGAGGCATCGAA+TGG	0.580890	5_4:+35258640	None:intergenic
ACAGTGGGATTAGAGGATGT+TGG	0.582052	5_4:-35259816	Msa0849040:CDS
TCATGATGACTATAAATACC+AGG	0.583831	5_4:-35258842	Msa0849040:CDS
CAGTAGCAGTAACAAGTTGG+AGG	0.584099	5_4:-35259944	Msa0849040:CDS
AAAATGAGGCTCTGATGGCA+CGG	0.584284	5_4:+35258541	None:intergenic
CTAAAACAAGATAACTAGAA+GGG	0.585095	5_4:+35258568	None:intergenic
CCTGTGGTACCTGATGATCT+GGG	0.587162	5_4:-35259589	Msa0849040:CDS
GAAACGTGGAATATCATTCG+TGG	0.587500	5_4:-35259524	Msa0849040:CDS
TTAGAGCTTCTGTTATCAAG+AGG	0.589868	5_4:-35259792	Msa0849040:CDS
ATATCATTCGTGGGTGATGT+TGG	0.590093	5_4:-35259514	Msa0849040:CDS
AGGTCCTCTCTCAAGACAGT+GGG	0.596580	5_4:-35259831	Msa0849040:CDS
TTGATACAATCAATTCTCAA+AGG	0.597385	5_4:-35258187	Msa0849040:three_prime_UTR
ATGTGTAGATGACTCCATGT+TGG	0.599392	5_4:-35258766	Msa0849040:exon
AACTGTGTTCTTCCTAACAT+AGG	0.600168	5_4:-35258608	Msa0849040:three_prime_UTR
ACTGGTTGGAACCACCAAGT+TGG	0.604816	5_4:-35259911	Msa0849040:CDS
TATTTGCACCATGTAACTTG+AGG	0.611537	5_4:-35259266	Msa0849040:CDS
CGTGCCGTCTTTAACCAACA+TGG	0.612820	5_4:-35258791	Msa0849040:CDS
ACAAAGTTCCTGCAAATCTG+AGG	0.617490	5_4:-35259154	Msa0849040:CDS
AGGCAGCCTGATACTTACTC+GGG	0.619512	5_4:-35259087	Msa0849040:CDS
ACAAGAGCAATATTCTGCCA+TGG	0.621065	5_4:-35258096	Msa0849040:three_prime_UTR
AAACGTGGAATATCATTCGT+GGG	0.627151	5_4:-35259523	Msa0849040:CDS
TGAAAAGGGAAGGATCTCCC+TGG	0.627762	5_4:+35258824	None:intergenic
ATAACCATGTTGGTTAAAGA+CGG	0.629339	5_4:+35258787	None:intergenic
GTTACATTGTTGATGCCTGG+TGG	0.632805	5_4:-35259492	Msa0849040:CDS
ACTGAGGAACTGAAAAGGGA+AGG	0.632917	5_4:+35258814	None:intergenic
GAGGTCCTCTCTCAAGACAG+TGG	0.634450	5_4:-35259832	Msa0849040:CDS
GGTTAAAGACGGCACGACTG+AGG	0.637232	5_4:+35258798	None:intergenic
TCATCTACACATAACCATGT+TGG	0.651118	5_4:+35258777	None:intergenic
TAATCCCACTGTCTTGAGAG+AGG	0.651285	5_4:+35259827	None:intergenic
CATGATGACTATAAATACCA+GGG	0.653722	5_4:-35258841	Msa0849040:CDS
TCACGACATTCAGGATGCAG+AGG	0.660192	5_4:-35259743	Msa0849040:CDS
AGTAGCAGTAACAAGTTGGA+GGG	0.665623	5_4:-35259943	Msa0849040:CDS
AACGTGTGATAAGATAACAA+AGG	0.669647	5_4:+35258310	None:intergenic
CTGTGTTTCTGCTAAGTGGG+AGG	0.673072	5_4:+35258695	None:intergenic
GGATAAACTTAGAAAGACTG+AGG	0.673810	5_4:-35259052	Msa0849040:CDS
GGAAGTTCCAGATCTTGTGA+AGG	0.675883	5_4:-35259031	Msa0849040:CDS
GAGGCACAAAGACAAAGTGA+AGG	0.676396	5_4:-35259773	Msa0849040:CDS
GGATGAAGCTAAGAAGCTCG+AGG	0.677654	5_4:-35259722	Msa0849040:intron
AGAGCAATATTCTGCCATGG+TGG	0.678051	5_4:-35258093	Msa0849040:three_prime_UTR
TGGGTCTCCGAGTAGATGCG+AGG	0.688864	5_4:-35259570	Msa0849040:CDS
TCCAGGAAGAGGAATCGAAG+TGG	0.703286	5_4:-35258976	Msa0849040:CDS
CGACCACTATCAGAGAAACG+TGG	0.706299	5_4:-35259538	Msa0849040:CDS
AAACTAGGACGATTCCACCA+TGG	0.714173	5_4:+35258079	None:intergenic
AATACAATATAACAAAACTG+GGG	0.717215	5_4:+35258276	None:intergenic
AGATTGGACAGGGAATGGAT+GGG	0.719923	5_4:-35259235	Msa0849040:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAATATTTTTCATTAGTAT+TGG	-	chr5_4:35258412-35258431	Msa0849040:three_prime_UTR	10.0%
!!!	TTTTTTATTAATTTTCTTGA+AGG	-	chr5_4:35258463-35258482	Msa0849040:three_prime_UTR	10.0%
!!!	TTAATATTTTTCATTAGTAT+TGG	-	chr5_4:35258412-35258431	Msa0849040:three_prime_UTR	10.0%
!!!	TTTTTTATTAATTTTCTTGA+AGG	-	chr5_4:35258463-35258482	Msa0849040:three_prime_UTR	10.0%
!!!	CATTTATTTTAGAAATCATA+TGG	-	chr5_4:35259842-35259861	Msa0849040:CDS	15.0%
!!!	CATTTATTTTAGAAATCATA+TGG	-	chr5_4:35259842-35259861	Msa0849040:CDS	15.0%
!!!	TATTAATTTTCTTGAAGGAA+TGG	-	chr5_4:35258468-35258487	Msa0849040:three_prime_UTR	20.0%
!!	TTAACTTCAAGATTAATAAG+AGG	+	chr5_4:35258780-35258799	None:intergenic	20.0%
!!	GGTAAAACTTATATTATCAT+TGG	+	chr5_4:35259721-35259740	None:intergenic	20.0%
!!!	AAAGACATTTTAAGAAAACA+AGG	+	chr5_4:35259753-35259772	None:intergenic	20.0%
!!	AATACAATATAACAAAACTG+GGG	+	chr5_4:35259822-35259841	None:intergenic	20.0%
!!	GAATACAATATAACAAAACT+GGG	+	chr5_4:35259823-35259842	None:intergenic	20.0%
!!	TGAATACAATATAACAAAAC+TGG	+	chr5_4:35259824-35259843	None:intergenic	20.0%
!!!	TATTAATTTTCTTGAAGGAA+TGG	-	chr5_4:35258468-35258487	Msa0849040:three_prime_UTR	20.0%
!!	TTAACTTCAAGATTAATAAG+AGG	+	chr5_4:35258780-35258799	None:intergenic	20.0%
!!	GGTAAAACTTATATTATCAT+TGG	+	chr5_4:35259721-35259740	None:intergenic	20.0%
!!!	AAAGACATTTTAAGAAAACA+AGG	+	chr5_4:35259753-35259772	None:intergenic	20.0%
!!	AATACAATATAACAAAACTG+GGG	+	chr5_4:35259822-35259841	None:intergenic	20.0%
!!	GAATACAATATAACAAAACT+GGG	+	chr5_4:35259823-35259842	None:intergenic	20.0%
!!	TGAATACAATATAACAAAAC+TGG	+	chr5_4:35259824-35259843	None:intergenic	20.0%
!	AAATATCATGTTTATTTCCC+AGG	-	chr5_4:35258674-35258693	Msa0849040:three_prime_UTR	25.0%
!!	ATGTTTTATCATTGCAGTTA+AGG	-	chr5_4:35259087-35259106	Msa0849040:CDS	25.0%
!	TAGAAAGAAAAAAACCAACA+TGG	+	chr5_4:35259346-35259365	None:intergenic	25.0%
!!!	TGGTTTTTTTCTTTCTAGAA+TGG	-	chr5_4:35259349-35259368	Msa0849040:intron	25.0%
!	CTAAAACAAGATAACTAGAA+GGG	+	chr5_4:35259530-35259549	None:intergenic	25.0%
!	ACTAAAACAAGATAACTAGA+AGG	+	chr5_4:35259531-35259550	None:intergenic	25.0%
!	TTGATACAATCAATTCTCAA+AGG	-	chr5_4:35259908-35259927	Msa0849040:CDS	25.0%
!	AAATATCATGTTTATTTCCC+AGG	-	chr5_4:35258674-35258693	Msa0849040:three_prime_UTR	25.0%
!!	ATGTTTTATCATTGCAGTTA+AGG	-	chr5_4:35259087-35259106	Msa0849040:CDS	25.0%
!	TAGAAAGAAAAAAACCAACA+TGG	+	chr5_4:35259346-35259365	None:intergenic	25.0%
!!!	TGGTTTTTTTCTTTCTAGAA+TGG	-	chr5_4:35259349-35259368	Msa0849040:intron	25.0%
!	CTAAAACAAGATAACTAGAA+GGG	+	chr5_4:35259530-35259549	None:intergenic	25.0%
!	ACTAAAACAAGATAACTAGA+AGG	+	chr5_4:35259531-35259550	None:intergenic	25.0%
!	TTGATACAATCAATTCTCAA+AGG	-	chr5_4:35259908-35259927	Msa0849040:CDS	25.0%
	TTCATTTGTCTCTTTGATTG+TGG	+	chr5_4:35258210-35258229	None:intergenic	30.0%
	GTACAGAATATAAGAACAGA+AGG	+	chr5_4:35258705-35258724	None:intergenic	30.0%
	ACAGAGCATACACAAAATTA+TGG	+	chr5_4:35258727-35258746	None:intergenic	30.0%
	TTTGTCGTCCTTGTAATATT+AGG	-	chr5_4:35258754-35258773	Msa0849040:three_prime_UTR	30.0%
	ATAAGAGGCCTAATATTACA+AGG	+	chr5_4:35258765-35258784	None:intergenic	30.0%
	TTGAAGTTAATGTCTTTGCA+GGG	-	chr5_4:35258790-35258809	Msa0849040:CDS	30.0%
	AAATCAACTGTAGCATCTAT+TGG	-	chr5_4:35258969-35258988	Msa0849040:CDS	30.0%
!	TTTTATCATTGCAGTTAAGG+TGG	-	chr5_4:35259090-35259109	Msa0849040:CDS	30.0%
	TCATGATGACTATAAATACC+AGG	-	chr5_4:35259253-35259272	Msa0849040:CDS	30.0%
	CATGATGACTATAAATACCA+GGG	-	chr5_4:35259254-35259273	Msa0849040:CDS	30.0%
!	ATAACCATGTTGGTTAAAGA+CGG	+	chr5_4:35259311-35259330	None:intergenic	30.0%
!!!	TAGAATGGTGTCTACTTTTT+AGG	-	chr5_4:35259364-35259383	Msa0849040:intron	30.0%
	ACGTGTGATAAGATAACAAA+GGG	+	chr5_4:35259787-35259806	None:intergenic	30.0%
	AACGTGTGATAAGATAACAA+AGG	+	chr5_4:35259788-35259807	None:intergenic	30.0%
	ATTGTATCAAGTCAGCATTA+CGG	+	chr5_4:35259898-35259917	None:intergenic	30.0%
	TTCATTTGTCTCTTTGATTG+TGG	+	chr5_4:35258210-35258229	None:intergenic	30.0%
	GTACAGAATATAAGAACAGA+AGG	+	chr5_4:35258705-35258724	None:intergenic	30.0%
	ACAGAGCATACACAAAATTA+TGG	+	chr5_4:35258727-35258746	None:intergenic	30.0%
	TTTGTCGTCCTTGTAATATT+AGG	-	chr5_4:35258754-35258773	Msa0849040:three_prime_UTR	30.0%
	ATAAGAGGCCTAATATTACA+AGG	+	chr5_4:35258765-35258784	None:intergenic	30.0%
	TTGAAGTTAATGTCTTTGCA+GGG	-	chr5_4:35258790-35258809	Msa0849040:CDS	30.0%
	AAATCAACTGTAGCATCTAT+TGG	-	chr5_4:35258969-35258988	Msa0849040:CDS	30.0%
!	TTTTATCATTGCAGTTAAGG+TGG	-	chr5_4:35259090-35259109	Msa0849040:CDS	30.0%
	TCATGATGACTATAAATACC+AGG	-	chr5_4:35259253-35259272	Msa0849040:CDS	30.0%
	CATGATGACTATAAATACCA+GGG	-	chr5_4:35259254-35259273	Msa0849040:CDS	30.0%
!	ATAACCATGTTGGTTAAAGA+CGG	+	chr5_4:35259311-35259330	None:intergenic	30.0%
!!!	TAGAATGGTGTCTACTTTTT+AGG	-	chr5_4:35259364-35259383	Msa0849040:intron	30.0%
	ACGTGTGATAAGATAACAAA+GGG	+	chr5_4:35259787-35259806	None:intergenic	30.0%
	AACGTGTGATAAGATAACAA+AGG	+	chr5_4:35259788-35259807	None:intergenic	30.0%
	ATTGTATCAAGTCAGCATTA+CGG	+	chr5_4:35259898-35259917	None:intergenic	30.0%
	TTAGAGCTTCTGTTATCAAG+AGG	-	chr5_4:35258303-35258322	Msa0849040:three_prime_UTR	35.0%
	AAACGTGGAATATCATTCGT+GGG	-	chr5_4:35258572-35258591	Msa0849040:three_prime_UTR	35.0%
	CTTGAAGTTAATGTCTTTGC+AGG	-	chr5_4:35258789-35258808	Msa0849040:CDS	35.0%
	TGAAGTTAATGTCTTTGCAG+GGG	-	chr5_4:35258791-35258810	Msa0849040:CDS	35.0%
	TATTTGCACCATGTAACTTG+AGG	-	chr5_4:35258829-35258848	Msa0849040:CDS	35.0%
	TTGGAGATGGAATACAATCT+AGG	-	chr5_4:35258988-35259007	Msa0849040:CDS	35.0%
	GGATAAACTTAGAAAGACTG+AGG	-	chr5_4:35259043-35259062	Msa0849040:CDS	35.0%
	AAAACATCCTTCACAAGATC+TGG	+	chr5_4:35259074-35259093	None:intergenic	35.0%
	AACAGAGCAATGACATACAT+AGG	-	chr5_4:35259159-35259178	Msa0849040:CDS	35.0%
!!	TGATGCTACTGATAGTTTTG+TGG	-	chr5_4:35259208-35259227	Msa0849040:CDS	35.0%
	TCATCTACACATAACCATGT+TGG	+	chr5_4:35259321-35259340	None:intergenic	35.0%
!	ATACTGTGTTTCTGCTAAGT+GGG	+	chr5_4:35259406-35259425	None:intergenic	35.0%
!	AATACTGTGTTTCTGCTAAG+TGG	+	chr5_4:35259407-35259426	None:intergenic	35.0%
	AACTGTGTTCTTCCTAACAT+AGG	-	chr5_4:35259487-35259506	Msa0849040:CDS	35.0%
	AAAAGACTAGCACCTATGTT+AGG	+	chr5_4:35259502-35259521	None:intergenic	35.0%
!!!	TAACATAGGTGCTAGTCTTT+TGG	-	chr5_4:35259501-35259520	Msa0849040:CDS	35.0%
!	CAAATAAAATGAGGCTCTGA+TGG	+	chr5_4:35259562-35259581	None:intergenic	35.0%
	CTAGGGCTTCAAATAAAATG+AGG	+	chr5_4:35259571-35259590	None:intergenic	35.0%
!!	CTCATTTTATTTGAAGCCCT+AGG	-	chr5_4:35259569-35259588	Msa0849040:CDS	35.0%
	CTTAGTGGAATAACCAACAT+TGG	-	chr5_4:35259635-35259654	Msa0849040:intron	35.0%
!!	CAACATTGGCTTTGACTTTA+GGG	-	chr5_4:35259649-35259668	Msa0849040:intron	35.0%
	AAGAAAACAAGGCACAAGAA+AGG	+	chr5_4:35259742-35259761	None:intergenic	35.0%
	TTAGAGCTTCTGTTATCAAG+AGG	-	chr5_4:35258303-35258322	Msa0849040:three_prime_UTR	35.0%
	AAACGTGGAATATCATTCGT+GGG	-	chr5_4:35258572-35258591	Msa0849040:three_prime_UTR	35.0%
	CTTGAAGTTAATGTCTTTGC+AGG	-	chr5_4:35258789-35258808	Msa0849040:CDS	35.0%
	TGAAGTTAATGTCTTTGCAG+GGG	-	chr5_4:35258791-35258810	Msa0849040:CDS	35.0%
	TATTTGCACCATGTAACTTG+AGG	-	chr5_4:35258829-35258848	Msa0849040:CDS	35.0%
	TTGGAGATGGAATACAATCT+AGG	-	chr5_4:35258988-35259007	Msa0849040:CDS	35.0%
	GGATAAACTTAGAAAGACTG+AGG	-	chr5_4:35259043-35259062	Msa0849040:CDS	35.0%
	AAAACATCCTTCACAAGATC+TGG	+	chr5_4:35259074-35259093	None:intergenic	35.0%
	AACAGAGCAATGACATACAT+AGG	-	chr5_4:35259159-35259178	Msa0849040:CDS	35.0%
!!	TGATGCTACTGATAGTTTTG+TGG	-	chr5_4:35259208-35259227	Msa0849040:CDS	35.0%
	TCATCTACACATAACCATGT+TGG	+	chr5_4:35259321-35259340	None:intergenic	35.0%
!	ATACTGTGTTTCTGCTAAGT+GGG	+	chr5_4:35259406-35259425	None:intergenic	35.0%
!	AATACTGTGTTTCTGCTAAG+TGG	+	chr5_4:35259407-35259426	None:intergenic	35.0%
	AACTGTGTTCTTCCTAACAT+AGG	-	chr5_4:35259487-35259506	Msa0849040:CDS	35.0%
	AAAAGACTAGCACCTATGTT+AGG	+	chr5_4:35259502-35259521	None:intergenic	35.0%
!!!	TAACATAGGTGCTAGTCTTT+TGG	-	chr5_4:35259501-35259520	Msa0849040:CDS	35.0%
!	CAAATAAAATGAGGCTCTGA+TGG	+	chr5_4:35259562-35259581	None:intergenic	35.0%
	CTAGGGCTTCAAATAAAATG+AGG	+	chr5_4:35259571-35259590	None:intergenic	35.0%
!!	CTCATTTTATTTGAAGCCCT+AGG	-	chr5_4:35259569-35259588	Msa0849040:CDS	35.0%
	CTTAGTGGAATAACCAACAT+TGG	-	chr5_4:35259635-35259654	Msa0849040:intron	35.0%
!!	CAACATTGGCTTTGACTTTA+GGG	-	chr5_4:35259649-35259668	Msa0849040:intron	35.0%
	AAGAAAACAAGGCACAAGAA+AGG	+	chr5_4:35259742-35259761	None:intergenic	35.0%
!!!	CTTGTTACTGCTACTGGTTT+TGG	+	chr5_4:35258147-35258166	None:intergenic	40.0%
	AACCAGTAGCAGTAACAAGT+TGG	-	chr5_4:35258148-35258167	Msa0849040:three_prime_UTR	40.0%
!	AGTAGCAGTAACAAGTTGGA+GGG	-	chr5_4:35258152-35258171	Msa0849040:three_prime_UTR	40.0%
	GCTTCACAGTATTTAGCTGT+AGG	-	chr5_4:35258230-35258249	Msa0849040:three_prime_UTR	40.0%
!!!	GATTTTAGCTTCTAGACCTG+TGG	-	chr5_4:35258490-35258509	Msa0849040:three_prime_UTR	40.0%
	ATTCCACGTTTCTCTGATAG+TGG	+	chr5_4:35258563-35258582	None:intergenic	40.0%
	GAAACGTGGAATATCATTCG+TGG	-	chr5_4:35258571-35258590	Msa0849040:three_prime_UTR	40.0%
	ATATCATTCGTGGGTGATGT+TGG	-	chr5_4:35258581-35258600	Msa0849040:three_prime_UTR	40.0%
	TTGGTTACATTGTTGATGCC+TGG	-	chr5_4:35258600-35258619	Msa0849040:three_prime_UTR	40.0%
	AAGAACAGAAGGTCATACCT+GGG	+	chr5_4:35258694-35258713	None:intergenic	40.0%
	TAAGAACAGAAGGTCATACC+TGG	+	chr5_4:35258695-35258714	None:intergenic	40.0%
	GCAATACAAGTCACAACATC+AGG	+	chr5_4:35258903-35258922	None:intergenic	40.0%
	ACAAAGTTCCTGCAAATCTG+AGG	-	chr5_4:35258941-35258960	Msa0849040:CDS	40.0%
	ACTGTAGCATCTATTGGAGA+TGG	-	chr5_4:35258975-35258994	Msa0849040:CDS	40.0%
!	TTACTCGGGTTCTTCTGAAA+AGG	-	chr5_4:35259022-35259041	Msa0849040:CDS	40.0%
	TGATCAACCTTCAATGAAGC+TGG	+	chr5_4:35259236-35259255	None:intergenic	40.0%
	ATGTGTAGATGACTCCATGT+TGG	-	chr5_4:35259329-35259348	Msa0849040:intron	40.0%
!!	ATGAGAAAAGAGGCATCGAA+TGG	+	chr5_4:35259458-35259477	None:intergenic	40.0%
!	ATTCGATGCCTCTTTTCTCA+TGG	-	chr5_4:35259457-35259476	Msa0849040:CDS	40.0%
	TGACGAAACCATGAGAAAAG+AGG	+	chr5_4:35259468-35259487	None:intergenic	40.0%
!	GATGATGCCTGCATAAGTTT+TGG	-	chr5_4:35259599-35259618	Msa0849040:CDS	40.0%
	CCTAAAGTCAAAGCCAATGT+TGG	+	chr5_4:35259651-35259670	None:intergenic	40.0%
!!	CCAACATTGGCTTTGACTTT+AGG	-	chr5_4:35259648-35259667	Msa0849040:intron	40.0%
!!	ATTGGCTTTGACTTTAGGGA+TGG	-	chr5_4:35259653-35259672	Msa0849040:intron	40.0%
	GCCAAAGTTACACAATGCAT+GGG	+	chr5_4:35259699-35259718	None:intergenic	40.0%
	ACAAGAGCAATATTCTGCCA+TGG	-	chr5_4:35259999-35260018	Msa0849040:CDS	40.0%
!!!	CTTGTTACTGCTACTGGTTT+TGG	+	chr5_4:35258147-35258166	None:intergenic	40.0%
	AACCAGTAGCAGTAACAAGT+TGG	-	chr5_4:35258148-35258167	Msa0849040:three_prime_UTR	40.0%
!	AGTAGCAGTAACAAGTTGGA+GGG	-	chr5_4:35258152-35258171	Msa0849040:three_prime_UTR	40.0%
	GCTTCACAGTATTTAGCTGT+AGG	-	chr5_4:35258230-35258249	Msa0849040:three_prime_UTR	40.0%
!!!	GATTTTAGCTTCTAGACCTG+TGG	-	chr5_4:35258490-35258509	Msa0849040:three_prime_UTR	40.0%
	ATTCCACGTTTCTCTGATAG+TGG	+	chr5_4:35258563-35258582	None:intergenic	40.0%
	GAAACGTGGAATATCATTCG+TGG	-	chr5_4:35258571-35258590	Msa0849040:three_prime_UTR	40.0%
	ATATCATTCGTGGGTGATGT+TGG	-	chr5_4:35258581-35258600	Msa0849040:three_prime_UTR	40.0%
	TTGGTTACATTGTTGATGCC+TGG	-	chr5_4:35258600-35258619	Msa0849040:three_prime_UTR	40.0%
	AAGAACAGAAGGTCATACCT+GGG	+	chr5_4:35258694-35258713	None:intergenic	40.0%
	TAAGAACAGAAGGTCATACC+TGG	+	chr5_4:35258695-35258714	None:intergenic	40.0%
	GCAATACAAGTCACAACATC+AGG	+	chr5_4:35258903-35258922	None:intergenic	40.0%
	ACAAAGTTCCTGCAAATCTG+AGG	-	chr5_4:35258941-35258960	Msa0849040:CDS	40.0%
	ACTGTAGCATCTATTGGAGA+TGG	-	chr5_4:35258975-35258994	Msa0849040:CDS	40.0%
!	TTACTCGGGTTCTTCTGAAA+AGG	-	chr5_4:35259022-35259041	Msa0849040:CDS	40.0%
	TGATCAACCTTCAATGAAGC+TGG	+	chr5_4:35259236-35259255	None:intergenic	40.0%
	ATGTGTAGATGACTCCATGT+TGG	-	chr5_4:35259329-35259348	Msa0849040:intron	40.0%
!!	ATGAGAAAAGAGGCATCGAA+TGG	+	chr5_4:35259458-35259477	None:intergenic	40.0%
!	ATTCGATGCCTCTTTTCTCA+TGG	-	chr5_4:35259457-35259476	Msa0849040:CDS	40.0%
	TGACGAAACCATGAGAAAAG+AGG	+	chr5_4:35259468-35259487	None:intergenic	40.0%
!	GATGATGCCTGCATAAGTTT+TGG	-	chr5_4:35259599-35259618	Msa0849040:CDS	40.0%
	CCTAAAGTCAAAGCCAATGT+TGG	+	chr5_4:35259651-35259670	None:intergenic	40.0%
!!	CCAACATTGGCTTTGACTTT+AGG	-	chr5_4:35259648-35259667	Msa0849040:intron	40.0%
!!	ATTGGCTTTGACTTTAGGGA+TGG	-	chr5_4:35259653-35259672	Msa0849040:intron	40.0%
	GCCAAAGTTACACAATGCAT+GGG	+	chr5_4:35259699-35259718	None:intergenic	40.0%
	ACAAGAGCAATATTCTGCCA+TGG	-	chr5_4:35259999-35260018	Msa0849040:CDS	40.0%
!!	CTCCAACTTGTTACTGCTAC+TGG	+	chr5_4:35258153-35258172	None:intergenic	45.0%
!	CAGTAGCAGTAACAAGTTGG+AGG	-	chr5_4:35258151-35258170	Msa0849040:three_prime_UTR	45.0%
!	GGTGGTTCCAACCAGTTTTA+CGG	+	chr5_4:35258180-35258199	None:intergenic	45.0%
	TTTGATTGTGGCCAACTTGG+TGG	+	chr5_4:35258198-35258217	None:intergenic	45.0%
	CTCTTTGATTGTGGCCAACT+TGG	+	chr5_4:35258201-35258220	None:intergenic	45.0%
	AGCTGTAGGTTCCAATGTTG+AGG	-	chr5_4:35258244-35258263	Msa0849040:three_prime_UTR	45.0%
	TTGAGAGAGGACCTCAACAT+TGG	+	chr5_4:35258258-35258277	None:intergenic	45.0%
	TAATCCCACTGTCTTGAGAG+AGG	+	chr5_4:35258271-35258290	None:intergenic	45.0%
	TCTCAAGACAGTGGGATTAG+AGG	-	chr5_4:35258272-35258291	Msa0849040:three_prime_UTR	45.0%
	ACAGTGGGATTAGAGGATGT+TGG	-	chr5_4:35258279-35258298	Msa0849040:three_prime_UTR	45.0%
	GAGGCACAAAGACAAAGTGA+AGG	-	chr5_4:35258322-35258341	Msa0849040:three_prime_UTR	45.0%
	GGTGCAATATCACGACATTC+AGG	-	chr5_4:35258343-35258362	Msa0849040:three_prime_UTR	45.0%
!!	CACGTTTCTCTGATAGTGGT+CGG	+	chr5_4:35258559-35258578	None:intergenic	45.0%
	GTTACATTGTTGATGCCTGG+TGG	-	chr5_4:35258603-35258622	Msa0849040:three_prime_UTR	45.0%
	CGAGAATGCCTCAAGTTACA+TGG	+	chr5_4:35258840-35258859	None:intergenic	45.0%
!	ACTTGAGGCATTCTCGAGAT+TGG	-	chr5_4:35258844-35258863	Msa0849040:CDS	45.0%
	AGATTGGACAGGGAATGGAT+GGG	-	chr5_4:35258860-35258879	Msa0849040:CDS	45.0%
	GAATGGATGGGTAAAGGTGA+GGG	-	chr5_4:35258872-35258891	Msa0849040:CDS	45.0%
!	TTTGCTGTCCTCAGATTTGC+AGG	+	chr5_4:35258952-35258971	None:intergenic	45.0%
	TAGGCAGCCTGATACTTACT+CGG	-	chr5_4:35259007-35259026	Msa0849040:CDS	45.0%
	GAAGAACCCGAGTAAGTATC+AGG	+	chr5_4:35259017-35259036	None:intergenic	45.0%
	GGAAGTTCCAGATCTTGTGA+AGG	-	chr5_4:35259064-35259083	Msa0849040:CDS	45.0%
	AGTTAAGGTGGAAGTCATCC+AGG	-	chr5_4:35259102-35259121	Msa0849040:CDS	45.0%
	GCATCAGACTGCAGAAACTT+CGG	+	chr5_4:35259194-35259213	None:intergenic	45.0%
	TGTGGTTCCAGCTTCATTGA+AGG	-	chr5_4:35259226-35259245	Msa0849040:CDS	45.0%
	ACTGAGGAACTGAAAAGGGA+AGG	+	chr5_4:35259284-35259303	None:intergenic	45.0%
	CACGACTGAGGAACTGAAAA+GGG	+	chr5_4:35259288-35259307	None:intergenic	45.0%
!	AAAATGAGGCTCTGATGGCA+CGG	+	chr5_4:35259557-35259576	None:intergenic	45.0%
!	ATTTGAAGCCCTAGGAAGCA+AGG	-	chr5_4:35259577-35259596	Msa0849040:CDS	45.0%
!!	ATGCCTGCATAAGTTTTGGC+AGG	-	chr5_4:35259603-35259622	Msa0849040:CDS	45.0%
	AGTCCTGCCAAAACTTATGC+AGG	+	chr5_4:35259609-35259628	None:intergenic	45.0%
!	GGCAGGACTGTTTAACTTAG+TGG	-	chr5_4:35259620-35259639	Msa0849040:intron	45.0%
	ATGCATGGGCTTGCAAACAA+TGG	+	chr5_4:35259685-35259704	None:intergenic	45.0%
	GCCCATGCATTGTGTAACTT+TGG	-	chr5_4:35259695-35259714	Msa0849040:intron	45.0%
	GGCCAAAGTTACACAATGCA+TGG	+	chr5_4:35259700-35259719	None:intergenic	45.0%
	AGAGCAATATTCTGCCATGG+TGG	-	chr5_4:35260002-35260021	Msa0849040:CDS	45.0%
!!	CTCCAACTTGTTACTGCTAC+TGG	+	chr5_4:35258153-35258172	None:intergenic	45.0%
!	CAGTAGCAGTAACAAGTTGG+AGG	-	chr5_4:35258151-35258170	Msa0849040:three_prime_UTR	45.0%
!	GGTGGTTCCAACCAGTTTTA+CGG	+	chr5_4:35258180-35258199	None:intergenic	45.0%
	TTTGATTGTGGCCAACTTGG+TGG	+	chr5_4:35258198-35258217	None:intergenic	45.0%
	CTCTTTGATTGTGGCCAACT+TGG	+	chr5_4:35258201-35258220	None:intergenic	45.0%
	AGCTGTAGGTTCCAATGTTG+AGG	-	chr5_4:35258244-35258263	Msa0849040:three_prime_UTR	45.0%
	TTGAGAGAGGACCTCAACAT+TGG	+	chr5_4:35258258-35258277	None:intergenic	45.0%
	TAATCCCACTGTCTTGAGAG+AGG	+	chr5_4:35258271-35258290	None:intergenic	45.0%
	TCTCAAGACAGTGGGATTAG+AGG	-	chr5_4:35258272-35258291	Msa0849040:three_prime_UTR	45.0%
	ACAGTGGGATTAGAGGATGT+TGG	-	chr5_4:35258279-35258298	Msa0849040:three_prime_UTR	45.0%
	GAGGCACAAAGACAAAGTGA+AGG	-	chr5_4:35258322-35258341	Msa0849040:three_prime_UTR	45.0%
	GGTGCAATATCACGACATTC+AGG	-	chr5_4:35258343-35258362	Msa0849040:three_prime_UTR	45.0%
!!	CACGTTTCTCTGATAGTGGT+CGG	+	chr5_4:35258559-35258578	None:intergenic	45.0%
	GTTACATTGTTGATGCCTGG+TGG	-	chr5_4:35258603-35258622	Msa0849040:three_prime_UTR	45.0%
	CGAGAATGCCTCAAGTTACA+TGG	+	chr5_4:35258840-35258859	None:intergenic	45.0%
!	ACTTGAGGCATTCTCGAGAT+TGG	-	chr5_4:35258844-35258863	Msa0849040:CDS	45.0%
	AGATTGGACAGGGAATGGAT+GGG	-	chr5_4:35258860-35258879	Msa0849040:CDS	45.0%
	GAATGGATGGGTAAAGGTGA+GGG	-	chr5_4:35258872-35258891	Msa0849040:CDS	45.0%
!	TTTGCTGTCCTCAGATTTGC+AGG	+	chr5_4:35258952-35258971	None:intergenic	45.0%
	TAGGCAGCCTGATACTTACT+CGG	-	chr5_4:35259007-35259026	Msa0849040:CDS	45.0%
	GAAGAACCCGAGTAAGTATC+AGG	+	chr5_4:35259017-35259036	None:intergenic	45.0%
	GGAAGTTCCAGATCTTGTGA+AGG	-	chr5_4:35259064-35259083	Msa0849040:CDS	45.0%
	AGTTAAGGTGGAAGTCATCC+AGG	-	chr5_4:35259102-35259121	Msa0849040:CDS	45.0%
	GCATCAGACTGCAGAAACTT+CGG	+	chr5_4:35259194-35259213	None:intergenic	45.0%
	TGTGGTTCCAGCTTCATTGA+AGG	-	chr5_4:35259226-35259245	Msa0849040:CDS	45.0%
	ACTGAGGAACTGAAAAGGGA+AGG	+	chr5_4:35259284-35259303	None:intergenic	45.0%
	CACGACTGAGGAACTGAAAA+GGG	+	chr5_4:35259288-35259307	None:intergenic	45.0%
!	AAAATGAGGCTCTGATGGCA+CGG	+	chr5_4:35259557-35259576	None:intergenic	45.0%
!	ATTTGAAGCCCTAGGAAGCA+AGG	-	chr5_4:35259577-35259596	Msa0849040:CDS	45.0%
!!	ATGCCTGCATAAGTTTTGGC+AGG	-	chr5_4:35259603-35259622	Msa0849040:CDS	45.0%
	AGTCCTGCCAAAACTTATGC+AGG	+	chr5_4:35259609-35259628	None:intergenic	45.0%
!	GGCAGGACTGTTTAACTTAG+TGG	-	chr5_4:35259620-35259639	Msa0849040:intron	45.0%
	ATGCATGGGCTTGCAAACAA+TGG	+	chr5_4:35259685-35259704	None:intergenic	45.0%
	GCCCATGCATTGTGTAACTT+TGG	-	chr5_4:35259695-35259714	Msa0849040:intron	45.0%
	GGCCAAAGTTACACAATGCA+TGG	+	chr5_4:35259700-35259719	None:intergenic	45.0%
	AGAGCAATATTCTGCCATGG+TGG	-	chr5_4:35260002-35260021	Msa0849040:CDS	45.0%
	GTTGGAGGGTTCCGTAAAAC+TGG	-	chr5_4:35258166-35258185	Msa0849040:three_prime_UTR	50.0%
	GAGGGTTCCGTAAAACTGGT+TGG	-	chr5_4:35258170-35258189	Msa0849040:three_prime_UTR	50.0%
	ACTGGTTGGAACCACCAAGT+TGG	-	chr5_4:35258184-35258203	Msa0849040:three_prime_UTR	50.0%
	AGGTCCTCTCTCAAGACAGT+GGG	-	chr5_4:35258264-35258283	Msa0849040:three_prime_UTR	50.0%
	TCACGACATTCAGGATGCAG+AGG	-	chr5_4:35258352-35258371	Msa0849040:three_prime_UTR	50.0%
	GGATGAAGCTAAGAAGCTCG+AGG	-	chr5_4:35258373-35258392	Msa0849040:three_prime_UTR	50.0%
	ACCTGTGGTACCTGATGATC+TGG	-	chr5_4:35258505-35258524	Msa0849040:three_prime_UTR	50.0%
	CCTGTGGTACCTGATGATCT+GGG	-	chr5_4:35258506-35258525	Msa0849040:three_prime_UTR	50.0%
	TCTTGGTCCTCGCATCTACT+CGG	+	chr5_4:35258535-35258554	None:intergenic	50.0%
!!	CTCTGATAGTGGTCGGATCT+TGG	+	chr5_4:35258552-35258571	None:intergenic	50.0%
	CGACCACTATCAGAGAAACG+TGG	-	chr5_4:35258557-35258576	Msa0849040:three_prime_UTR	50.0%
	AGGCATTCTCGAGATTGGAC+AGG	-	chr5_4:35258849-35258868	Msa0849040:CDS	50.0%
	GGCATTCTCGAGATTGGACA+GGG	-	chr5_4:35258850-35258869	Msa0849040:CDS	50.0%
	TCTCGAGATTGGACAGGGAA+TGG	-	chr5_4:35258855-35258874	Msa0849040:CDS	50.0%
	GAGATTGGACAGGGAATGGA+TGG	-	chr5_4:35258859-35258878	Msa0849040:CDS	50.0%
	GACAGGGAATGGATGGGTAA+AGG	-	chr5_4:35258866-35258885	Msa0849040:CDS	50.0%
	GGAATGGATGGGTAAAGGTG+AGG	-	chr5_4:35258871-35258890	Msa0849040:CDS	50.0%
	GATGGGTAAAGGTGAGGGAA+AGG	-	chr5_4:35258877-35258896	Msa0849040:CDS	50.0%
	AGGCAGCCTGATACTTACTC+GGG	-	chr5_4:35259008-35259027	Msa0849040:CDS	50.0%
	TCCAGGAAGAGGAATCGAAG+TGG	-	chr5_4:35259119-35259138	Msa0849040:CDS	50.0%
	TGAAAAGGGAAGGATCTCCC+TGG	+	chr5_4:35259274-35259293	None:intergenic	50.0%
	GCACGACTGAGGAACTGAAA+AGG	+	chr5_4:35259289-35259308	None:intergenic	50.0%
	CGTGCCGTCTTTAACCAACA+TGG	-	chr5_4:35259304-35259323	Msa0849040:intron	50.0%
!	CTGTGTTTCTGCTAAGTGGG+AGG	+	chr5_4:35259403-35259422	None:intergenic	50.0%
	GGCATCATCCTTGCTTCCTA+GGG	+	chr5_4:35259588-35259607	None:intergenic	50.0%
	AGGCATCATCCTTGCTTCCT+AGG	+	chr5_4:35259589-35259608	None:intergenic	50.0%
	GTTGGAGGGTTCCGTAAAAC+TGG	-	chr5_4:35258166-35258185	Msa0849040:three_prime_UTR	50.0%
	GAGGGTTCCGTAAAACTGGT+TGG	-	chr5_4:35258170-35258189	Msa0849040:three_prime_UTR	50.0%
	ACTGGTTGGAACCACCAAGT+TGG	-	chr5_4:35258184-35258203	Msa0849040:three_prime_UTR	50.0%
	AGGTCCTCTCTCAAGACAGT+GGG	-	chr5_4:35258264-35258283	Msa0849040:three_prime_UTR	50.0%
	TCACGACATTCAGGATGCAG+AGG	-	chr5_4:35258352-35258371	Msa0849040:three_prime_UTR	50.0%
	GGATGAAGCTAAGAAGCTCG+AGG	-	chr5_4:35258373-35258392	Msa0849040:three_prime_UTR	50.0%
	ACCTGTGGTACCTGATGATC+TGG	-	chr5_4:35258505-35258524	Msa0849040:three_prime_UTR	50.0%
	CCTGTGGTACCTGATGATCT+GGG	-	chr5_4:35258506-35258525	Msa0849040:three_prime_UTR	50.0%
	TCTTGGTCCTCGCATCTACT+CGG	+	chr5_4:35258535-35258554	None:intergenic	50.0%
!!	CTCTGATAGTGGTCGGATCT+TGG	+	chr5_4:35258552-35258571	None:intergenic	50.0%
	CGACCACTATCAGAGAAACG+TGG	-	chr5_4:35258557-35258576	Msa0849040:three_prime_UTR	50.0%
	AGGCATTCTCGAGATTGGAC+AGG	-	chr5_4:35258849-35258868	Msa0849040:CDS	50.0%
	GGCATTCTCGAGATTGGACA+GGG	-	chr5_4:35258850-35258869	Msa0849040:CDS	50.0%
	TCTCGAGATTGGACAGGGAA+TGG	-	chr5_4:35258855-35258874	Msa0849040:CDS	50.0%
	GAGATTGGACAGGGAATGGA+TGG	-	chr5_4:35258859-35258878	Msa0849040:CDS	50.0%
	GACAGGGAATGGATGGGTAA+AGG	-	chr5_4:35258866-35258885	Msa0849040:CDS	50.0%
	GGAATGGATGGGTAAAGGTG+AGG	-	chr5_4:35258871-35258890	Msa0849040:CDS	50.0%
	GATGGGTAAAGGTGAGGGAA+AGG	-	chr5_4:35258877-35258896	Msa0849040:CDS	50.0%
	AGGCAGCCTGATACTTACTC+GGG	-	chr5_4:35259008-35259027	Msa0849040:CDS	50.0%
	TCCAGGAAGAGGAATCGAAG+TGG	-	chr5_4:35259119-35259138	Msa0849040:CDS	50.0%
	TGAAAAGGGAAGGATCTCCC+TGG	+	chr5_4:35259274-35259293	None:intergenic	50.0%
	GCACGACTGAGGAACTGAAA+AGG	+	chr5_4:35259289-35259308	None:intergenic	50.0%
	CGTGCCGTCTTTAACCAACA+TGG	-	chr5_4:35259304-35259323	Msa0849040:intron	50.0%
!	CTGTGTTTCTGCTAAGTGGG+AGG	+	chr5_4:35259403-35259422	None:intergenic	50.0%
	GGCATCATCCTTGCTTCCTA+GGG	+	chr5_4:35259588-35259607	None:intergenic	50.0%
	AGGCATCATCCTTGCTTCCT+AGG	+	chr5_4:35259589-35259608	None:intergenic	50.0%
	GAGGTCCTCTCTCAAGACAG+TGG	-	chr5_4:35258263-35258282	Msa0849040:three_prime_UTR	55.0%
	CCCAGATCATCAGGTACCAC+AGG	+	chr5_4:35258509-35258528	None:intergenic	55.0%
	ACTCGGAGACCCAGATCATC+AGG	+	chr5_4:35258518-35258537	None:intergenic	55.0%
	GTTGATGCCTGGTGGCATGA+TGG	-	chr5_4:35258611-35258630	Msa0849040:three_prime_UTR	55.0%
!	ATGCCTGGTGGCATGATGGA+TGG	-	chr5_4:35258615-35258634	Msa0849040:three_prime_UTR	55.0%
!!	CTGGTGGCATGATGGATGGT+GGG	-	chr5_4:35258619-35258638	Msa0849040:three_prime_UTR	55.0%
!!	TGGCATGATGGATGGTGGGA+AGG	-	chr5_4:35258623-35258642	Msa0849040:three_prime_UTR	55.0%
	GGTGGAAGTCATCCAGGAAG+AGG	-	chr5_4:35259108-35259127	Msa0849040:CDS	55.0%
	GCCACTTCGATTCCTCTTCC+TGG	+	chr5_4:35259123-35259142	None:intergenic	55.0%
	GGTTAAAGACGGCACGACTG+AGG	+	chr5_4:35259300-35259319	None:intergenic	55.0%
	GAGGTCCTCTCTCAAGACAG+TGG	-	chr5_4:35258263-35258282	Msa0849040:three_prime_UTR	55.0%
	CCCAGATCATCAGGTACCAC+AGG	+	chr5_4:35258509-35258528	None:intergenic	55.0%
	ACTCGGAGACCCAGATCATC+AGG	+	chr5_4:35258518-35258537	None:intergenic	55.0%
	GTTGATGCCTGGTGGCATGA+TGG	-	chr5_4:35258611-35258630	Msa0849040:three_prime_UTR	55.0%
!	ATGCCTGGTGGCATGATGGA+TGG	-	chr5_4:35258615-35258634	Msa0849040:three_prime_UTR	55.0%
!!	CTGGTGGCATGATGGATGGT+GGG	-	chr5_4:35258619-35258638	Msa0849040:three_prime_UTR	55.0%
!!	TGGCATGATGGATGGTGGGA+AGG	-	chr5_4:35258623-35258642	Msa0849040:three_prime_UTR	55.0%
	GGTGGAAGTCATCCAGGAAG+AGG	-	chr5_4:35259108-35259127	Msa0849040:CDS	55.0%
	GCCACTTCGATTCCTCTTCC+TGG	+	chr5_4:35259123-35259142	None:intergenic	55.0%
	GGTTAAAGACGGCACGACTG+AGG	+	chr5_4:35259300-35259319	None:intergenic	55.0%
	TGGGTCTCCGAGTAGATGCG+AGG	-	chr5_4:35258525-35258544	Msa0849040:three_prime_UTR	60.0%
	CCACCATCCATCATGCCACC+AGG	+	chr5_4:35258621-35258640	None:intergenic	60.0%
!!	CCTGGTGGCATGATGGATGG+TGG	-	chr5_4:35258618-35258637	Msa0849040:three_prime_UTR	60.0%
	TGGGTCTCCGAGTAGATGCG+AGG	-	chr5_4:35258525-35258544	Msa0849040:three_prime_UTR	60.0%
	CCACCATCCATCATGCCACC+AGG	+	chr5_4:35258621-35258640	None:intergenic	60.0%
!!	CCTGGTGGCATGATGGATGG+TGG	-	chr5_4:35258618-35258637	Msa0849040:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	35258086	35260031	35258086	ID=Msa0849040;Name=Msa0849040
chr5_4	mRNA	35258086	35260031	35258086	ID=Msa0849040-mRNA-1;Parent=Msa0849040;Name=Msa0849040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|1\|0.66\|1\|1\|1\|3\|691\|349
chr5_4	exon	35258086	35259306	35258086	ID=Msa0849040-mRNA-1:exon:11811;Parent=Msa0849040-mRNA-1
chr5_4	exon	35259422	35259632	35259422	ID=Msa0849040-mRNA-1:exon:11810;Parent=Msa0849040-mRNA-1
chr5_4	exon	35259723	35260031	35259723	ID=Msa0849040-mRNA-1:exon:11809;Parent=Msa0849040-mRNA-1
chr5_4	CDS	35259723	35260031	35259723	ID=Msa0849040-mRNA-1:cds;Parent=Msa0849040-mRNA-1
chr5_4	CDS	35259422	35259632	35259422	ID=Msa0849040-mRNA-1:cds;Parent=Msa0849040-mRNA-1
chr5_4	CDS	35258777	35259306	35258777	ID=Msa0849040-mRNA-1:cds;Parent=Msa0849040-mRNA-1
chr5_4	three_prime_UTR	35258086	35258776	35258086	ID=Msa0849040-mRNA-1:three_prime_utr;Parent=Msa0849040-mRNA-1

Gene Sequence

>Msa0849040

GATGCTGTTGAGTTTGGTTCTCTTCAATTAGAAAAATTGAGTAATTGTAAGATTGATGCCAAAACCAGTAGCAGTAACAAGTTGGAGGGTTCCGTAAAACTGGTTGGAACCACCAAGTTGGCCACAATCAAAGAGACAAATGAAGCTTCACAGTATTTAGCTGTAGGTTCCAATGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGTTGGTTTAGAGCTTCTGTTATCAAGAGGCACAAAGACAAAGTGAAGGTGCAATATCACGACATTCAGGATGCAGAGGATGAAGCTAAGAAGCTCGAGGAATGGATTTTAGCTTCTAGACCTGTGGTACCTGATGATCTGGGTCTCCGAGTAGATGCGAGGACCAAGATCCGACCACTATCAGAGAAACGTGGAATATCATTCGTGGGTGATGTTGGTTACATTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAATCTGATGATAAATATCATGTTTATTTCCCAGGGGAAAAGAAGATGTCAATATTTGCACCATGTAACTTGAGGCATTCTCGAGATTGGACAGGGAATGGATGGGTAAAGGTGAGGGAAAGGCCTGATGTTGTGACTTGTATTGCATCAAGCTTGAAAACAAAACAAAGTTCCTGCAAATCTGAGGACAGCAAATCAACTGTAGCATCTATTGGAGATGGAATACAATCTAGGCAGCCTGATACTTACTCGGGTTCTTCTGAAAAGGATAAACTTAGAAAGACTGAGGAAGTTCCAGATCTTGTGAAGGATGTTTTATCATTGCAGTTAAGGTGGAAGTCATCCAGGAAGAGGAATCGAAGTGGCACTTCTCAGCAGAAGCAACAGAGCAATGACATACATAGGAAATTGTCGCCGAAGTTTCTGCAGTCTGATGCTACTGATAGTTTTGTGGTTCCAGCTTCATTGAAGGTTGATCATGATGACTATAAATACCAGGGAGATCCTTCCCTTTTCAGTTCCTCAGTCGTGCCGTCTTTAACCAACATGGTTATGTGTAGATGA

Protein sequence

>Msa0849040

DAVEFGSLQLEKLSNCKIDAKTSSSNKLEGSVKLVGTTKLATIKETNEASQYLAVGSNVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEAKKLEEWILASRPVVPDDLGLRVDARTKIRPLSEKRGISFVGDVGYIVDAWWHDGWWEGIVVQKESDDKYHVYFPGEKKMSIFAPCNLRHSRDWTGNGWVKVRERPDVVTCIASSLKTKQSSCKSEDSKSTVASIGDGIQSRQPDTYSGSSEKDKLRKTEEVPDLVKDVLSLQLRWKSSRKRNRSGTSQQKQQSNDIHRKLSPKFLQSDATDSFVVPASLKVDHDDYKYQGDPSLFSSSVVPSLTNMVMCR*