Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424140 | XP_013461366.1 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 6.42e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424140 | sp|Q8LG89|BABL_ARATH | 54.264 | 129 | 56 | 1 | 1 | 126 | 1 | 129 | 1.49e-46 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424140 | B7FHG5 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 3.07e-85 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0424140 | 0.808440 | 3.094413e-50 | -8.615850e-47 |
| Msa0019900 | Msa0424140 | 0.805855 | 1.091055e-49 | -8.615850e-47 |
| Msa0025160 | Msa0424140 | 0.828162 | 1.047970e-54 | -8.615850e-47 |
| Msa0044160 | Msa0424140 | 0.823842 | 1.114307e-53 | -8.615850e-47 |
| Msa0054690 | Msa0424140 | 0.815810 | 7.640572e-52 | -8.615850e-47 |
| Msa0067330 | Msa0424140 | 0.814566 | 1.443431e-51 | -8.615850e-47 |
| Msa0081520 | Msa0424140 | 0.804509 | 2.087306e-49 | -8.615850e-47 |
| Msa0125360 | Msa0424140 | 0.803850 | 2.862938e-49 | -8.615850e-47 |
| Msa0158860 | Msa0424140 | 0.818357 | 2.045137e-52 | -8.615850e-47 |
| Msa0174450 | Msa0424140 | 0.810178 | 1.311332e-50 | -8.615850e-47 |
| Msa0183710 | Msa0424140 | 0.804665 | 1.937419e-49 | -8.615850e-47 |
| Msa0225100 | Msa0424140 | 0.800917 | 1.150789e-48 | -8.615850e-47 |
| Msa0369790 | Msa0424140 | 0.813415 | 2.589269e-51 | -8.615850e-47 |
| Msa0375640 | Msa0424140 | 0.905414 | 4.402729e-80 | -8.615850e-47 |
| Msa0392380 | Msa0424140 | 0.809902 | 1.503633e-50 | -8.615850e-47 |
| Msa0424140 | Msa0424160 | 0.914444 | 1.904495e-84 | -8.615850e-47 |
| Msa0424140 | Msa0437520 | 0.801703 | 7.945649e-49 | -8.615850e-47 |
| Msa0424140 | Msa0453040 | 0.805478 | 1.309141e-49 | -8.615850e-47 |
| Msa0424140 | Msa0464000 | 0.807572 | 4.733906e-50 | -8.615850e-47 |
| Msa0424140 | Msa0465530 | 0.805759 | 1.142850e-49 | -8.615850e-47 |
| Msa0424140 | Msa0471000 | 0.813428 | 2.573108e-51 | -8.615850e-47 |
| Msa0424140 | Msa0472950 | 0.806923 | 6.498295e-50 | -8.615850e-47 |
| Msa0424140 | Msa0474730 | 0.804517 | 2.080210e-49 | -8.615850e-47 |
| Msa0424140 | Msa0509550 | 0.808496 | 3.010463e-50 | -8.615850e-47 |
| Msa0424140 | Msa0515800 | 0.907858 | 3.216268e-81 | -8.615850e-47 |
| Msa0424140 | Msa0517250 | 0.800054 | 1.725016e-48 | -8.615850e-47 |
| Msa0424140 | Msa0528570 | 0.817244 | 3.646745e-52 | -8.615850e-47 |
| Msa0424140 | Msa0529030 | 0.803488 | 3.404549e-49 | -8.615850e-47 |
| Msa0424140 | Msa0550050 | 0.801696 | 7.971632e-49 | -8.615850e-47 |
| Msa0424140 | Msa0580370 | 0.811962 | 5.384763e-51 | -8.615850e-47 |
| Msa0424140 | Msa0587620 | 0.804032 | 2.623767e-49 | -8.615850e-47 |
| Msa0424140 | Msa0611210 | 0.816144 | 6.434109e-52 | -8.615850e-47 |
| Msa0424140 | Msa0626450 | 0.810350 | 1.204125e-50 | -8.615850e-47 |
| Msa0424140 | Msa0626490 | 0.807989 | 3.861025e-50 | -8.615850e-47 |
| Msa0424140 | Msa0651550 | 0.810596 | 1.065308e-50 | -8.615850e-47 |
| Msa0424140 | Msa0658640 | 0.812683 | 3.748320e-51 | -8.615850e-47 |
| Msa0424140 | Msa0661150 | 0.815409 | 9.384285e-52 | -8.615850e-47 |
| Msa0424140 | Msa0664600 | 0.807144 | 5.834922e-50 | -8.615850e-47 |
| Msa0424140 | Msa0693330 | 0.806148 | 9.467754e-50 | -8.615850e-47 |
| Msa0424140 | Msa0702720 | 0.808314 | 3.290826e-50 | -8.615850e-47 |
| Msa0424140 | Msa0735780 | 0.801164 | 1.024533e-48 | -8.615850e-47 |
| Msa0424140 | Msa0738700 | 0.811546 | 6.632777e-51 | -8.615850e-47 |
| Msa0424140 | Msa0768990 | 0.810305 | 1.231633e-50 | -8.615850e-47 |
| Msa0424140 | Msa0775060 | 0.812482 | 4.147465e-51 | -8.615850e-47 |
| Msa0424140 | Msa0783530 | 0.805138 | 1.542358e-49 | -8.615850e-47 |
| Msa0424140 | Msa0795870 | 0.810206 | 1.293174e-50 | -8.615850e-47 |
| Msa0424140 | Msa0829300 | 0.812198 | 4.784145e-51 | -8.615850e-47 |
| Msa0424140 | Msa0829330 | 0.814534 | 1.467246e-51 | -8.615850e-47 |
| Msa0424140 | Msa0833650 | 0.806763 | 7.024219e-50 | -8.615850e-47 |
| Msa0424140 | Msa0859290 | 0.800390 | 1.473841e-48 | -8.615850e-47 |
| Msa0424140 | Msa0878280 | 0.826131 | 3.210518e-54 | -8.615850e-47 |
| Msa0424140 | Msa0945190 | 0.807361 | 5.248237e-50 | -8.615850e-47 |
| Msa0424140 | Msa0979180 | 0.802507 | 5.430109e-49 | -8.615850e-47 |
| Msa0424140 | Msa0981320 | 0.804315 | 2.291366e-49 | -8.615850e-47 |
| Msa0424140 | Msa1042160 | 0.830833 | 2.350126e-55 | -8.615850e-47 |
| Msa0424140 | Msa1042190 | 0.834495 | 2.899309e-56 | -8.615850e-47 |
| Msa0424140 | Msa1072940 | 0.859879 | 3.046747e-63 | -8.615850e-47 |
| Msa0424140 | Msa1132840 | 0.808836 | 2.546576e-50 | -8.615850e-47 |
| Msa0424140 | Msa1160920 | 0.863856 | 1.846747e-64 | -8.615850e-47 |
| Msa0424140 | Msa1167470 | 0.824599 | 7.396708e-54 | -8.615850e-47 |
| Msa0424140 | Msa1200890 | 0.804972 | 1.671039e-49 | -8.615850e-47 |
| Msa0424140 | Msa1216110 | 0.810537 | 1.097145e-50 | -8.615850e-47 |
| Msa0424140 | Msa1217210 | 0.820991 | 5.119417e-53 | -8.615850e-47 |
| Msa0424140 | Msa1226520 | 0.808134 | 3.595488e-50 | -8.615850e-47 |
| Msa0424140 | Msa1262590 | 0.806410 | 8.336641e-50 | -8.615850e-47 |
| Msa0424140 | Msa1359690 | 0.814909 | 1.211383e-51 | -8.615850e-47 |
| Msa0424140 | Msa1393780 | 0.800205 | 1.607807e-48 | -8.615850e-47 |
| Msa0424140 | Msa1415540 | 0.819417 | 1.174201e-52 | -8.615850e-47 |
| Msa0424140 | Msa1440960 | 0.806977 | 6.328698e-50 | -8.615850e-47 |
| Msa0424140 | Msa1447100 | 0.807334 | 5.318919e-50 | -8.615850e-47 |
| Msa0424140 | Msa1449900 | 0.813947 | 1.977033e-51 | -8.615850e-47 |
| Msa0424140 | Msa1455640 | 0.813082 | 3.064998e-51 | -8.615850e-47 |
| Msa0275770 | Msa0424140 | 0.817187 | 3.755266e-52 | -8.615850e-47 |
| Msa0275820 | Msa0424140 | 0.811322 | 7.417920e-51 | -8.615850e-47 |
| Msa0307270 | Msa0424140 | 0.860274 | 2.314799e-63 | -8.615850e-47 |
| Msa0330520 | Msa0424140 | 0.801654 | 8.129825e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424140 | MtrunA17_Chr3g0125791 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 5.91e-89 | 253 |
| Msa0424140 | MtrunA17_Chr3g0125761 | 66.400 | 125 | 42 | 0 | 1 | 125 | 1 | 125 | 5.56e-61 | 183 |
| Msa0424140 | MtrunA17_Chr8g0380901 | 61.905 | 126 | 41 | 2 | 1 | 125 | 1 | 120 | 5.26e-54 | 165 |
| Msa0424140 | MtrunA17_Chr2g0301431 | 47.619 | 126 | 63 | 2 | 1 | 125 | 1 | 124 | 9.13e-40 | 129 |
| Msa0424140 | MtrunA17_Chr8g0380711 | 55.882 | 102 | 44 | 1 | 25 | 125 | 20 | 121 | 3.21e-38 | 125 |
| Msa0424140 | MtrunA17_Chr5g0394321 | 36.752 | 117 | 65 | 3 | 14 | 123 | 7 | 121 | 1.76e-21 | 84.3 |
| Msa0424140 | MtrunA17_Chr8g0335531 | 40.984 | 122 | 66 | 4 | 10 | 126 | 1 | 121 | 4.59e-21 | 83.6 |
| Msa0424140 | MtrunA17_Chr1g0177341 | 35.780 | 109 | 66 | 3 | 19 | 123 | 11 | 119 | 5.95e-19 | 77.4 |
| Msa0424140 | MtrunA17_Chr1g0177331 | 35.780 | 109 | 66 | 3 | 19 | 123 | 11 | 119 | 5.95e-19 | 77.4 |
| Msa0424140 | MtrunA17_Chr1g0205701 | 35.965 | 114 | 63 | 4 | 18 | 123 | 9 | 120 | 5.96e-19 | 78.2 |
| Msa0424140 | MtrunA17_Chr8g0335571 | 38.525 | 122 | 69 | 4 | 10 | 126 | 1 | 121 | 1.43e-18 | 77.4 |
| Msa0424140 | MtrunA17_Chr7g0253681 | 34.167 | 120 | 75 | 3 | 8 | 123 | 2 | 121 | 1.54e-18 | 76.3 |
| Msa0424140 | MtrunA17_Chr7g0253731 | 32.143 | 112 | 72 | 3 | 9 | 117 | 2 | 112 | 1.85e-18 | 76.3 |
| Msa0424140 | MtrunA17_Chr4g0064041 | 39.394 | 99 | 53 | 2 | 32 | 123 | 190 | 288 | 3.04e-18 | 79.0 |
| Msa0424140 | MtrunA17_Chr4g0064041 | 33.333 | 129 | 72 | 3 | 12 | 126 | 1 | 129 | 1.45e-15 | 71.2 |
| Msa0424140 | MtrunA17_Chr7g0253701 | 34.167 | 120 | 74 | 4 | 8 | 123 | 2 | 120 | 1.10e-17 | 74.3 |
| Msa0424140 | MtrunA17_Chr7g0253671 | 34.167 | 120 | 74 | 4 | 8 | 123 | 2 | 120 | 1.10e-17 | 74.3 |
| Msa0424140 | MtrunA17_Chr1g0211101 | 36.134 | 119 | 70 | 4 | 11 | 123 | 9 | 127 | 1.30e-17 | 74.3 |
| Msa0424140 | MtrunA17_Chr3g0132441 | 38.393 | 112 | 65 | 3 | 15 | 123 | 8 | 118 | 1.87e-17 | 74.3 |
| Msa0424140 | MtrunA17_Chr2g0306461 | 35.000 | 120 | 69 | 4 | 10 | 123 | 7 | 123 | 3.73e-17 | 73.6 |
| Msa0424140 | MtrunA17_Chr3g0132701 | 40.000 | 115 | 61 | 4 | 17 | 123 | 6 | 120 | 5.19e-17 | 73.6 |
| Msa0424140 | MtrunA17_Chr2g0323021 | 39.048 | 105 | 59 | 4 | 23 | 123 | 15 | 118 | 8.68e-17 | 73.2 |
| Msa0424140 | MtrunA17_Chr7g0253761 | 34.454 | 119 | 73 | 3 | 10 | 123 | 1 | 119 | 2.27e-16 | 71.2 |
| Msa0424140 | MtrunA17_Chr7g0253641 | 34.821 | 112 | 69 | 3 | 15 | 123 | 9 | 119 | 3.28e-16 | 71.6 |
| Msa0424140 | MtrunA17_Chr6g0459441 | 40.816 | 98 | 53 | 4 | 30 | 123 | 23 | 119 | 4.61e-16 | 70.5 |
| Msa0424140 | MtrunA17_Chr3g0132511 | 39.130 | 115 | 62 | 4 | 17 | 123 | 6 | 120 | 7.70e-16 | 70.5 |
| Msa0424140 | MtrunA17_Chr6g0483981 | 36.000 | 125 | 61 | 3 | 15 | 125 | 9 | 128 | 1.94e-15 | 71.2 |
| Msa0424140 | MtrunA17_Chr3g0132431 | 39.474 | 114 | 61 | 4 | 17 | 123 | 6 | 118 | 2.67e-15 | 68.6 |
| Msa0424140 | MtrunA17_Chr4g0033131 | 29.752 | 121 | 72 | 3 | 16 | 123 | 7 | 127 | 6.43e-15 | 67.4 |
| Msa0424140 | MtrunA17_Chr4g0033531 | 29.752 | 121 | 72 | 3 | 16 | 123 | 7 | 127 | 6.43e-15 | 67.4 |
| Msa0424140 | MtrunA17_Chr6g0481491 | 31.250 | 112 | 71 | 4 | 15 | 123 | 12 | 120 | 3.21e-14 | 66.2 |
| Msa0424140 | MtrunA17_Chr6g0453801 | 31.707 | 123 | 80 | 2 | 7 | 125 | 9 | 131 | 5.45e-14 | 64.7 |
| Msa0424140 | MtrunA17_Chr7g0253631 | 34.454 | 119 | 73 | 3 | 10 | 123 | 1 | 119 | 7.33e-14 | 65.5 |
| Msa0424140 | MtrunA17_Chr6g0453921 | 30.827 | 133 | 82 | 3 | 3 | 125 | 2 | 134 | 1.44e-13 | 63.9 |
| Msa0424140 | MtrunA17_Chr4g0001571 | 32.653 | 98 | 64 | 1 | 30 | 125 | 26 | 123 | 3.03e-13 | 62.8 |
| Msa0424140 | MtrunA17_Chr4g0041811 | 28.800 | 125 | 82 | 2 | 9 | 126 | 8 | 132 | 1.36e-12 | 62.0 |
| Msa0424140 | MtrunA17_Chr1g0196801 | 33.333 | 102 | 64 | 3 | 27 | 125 | 17 | 117 | 6.17e-12 | 59.7 |
| Msa0424140 | MtrunA17_Chr5g0440711 | 30.328 | 122 | 80 | 3 | 7 | 123 | 3 | 124 | 3.00e-11 | 57.0 |
| Msa0424140 | MtrunA17_Chr4g0064031 | 33.019 | 106 | 59 | 4 | 26 | 120 | 21 | 125 | 4.29e-11 | 57.0 |
| Msa0424140 | MtrunA17_Chr8g0387804 | 29.091 | 110 | 71 | 3 | 20 | 123 | 17 | 125 | 6.96e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424140 | AT2G02850.1 | 54.264 | 129 | 56 | 1 | 1 | 126 | 1 | 129 | 1.52e-47 | 149 |
| Msa0424140 | AT1G17800.1 | 40.945 | 127 | 67 | 4 | 7 | 126 | 12 | 137 | 4.54e-27 | 98.2 |
| Msa0424140 | AT2G32300.1 | 36.885 | 122 | 73 | 3 | 8 | 126 | 2 | 122 | 4.15e-22 | 88.2 |
| Msa0424140 | AT2G32300.2 | 36.885 | 122 | 73 | 3 | 8 | 126 | 32 | 152 | 6.51e-22 | 88.2 |
| Msa0424140 | AT5G26330.1 | 32.787 | 122 | 77 | 2 | 10 | 126 | 1 | 122 | 6.91e-21 | 83.6 |
| Msa0424140 | AT3G17675.1 | 34.426 | 122 | 77 | 2 | 5 | 123 | 4 | 125 | 1.28e-20 | 81.3 |
| Msa0424140 | AT5G07475.1 | 37.838 | 111 | 62 | 4 | 19 | 123 | 13 | 122 | 1.61e-19 | 80.1 |
| Msa0424140 | AT3G60280.1 | 41.237 | 97 | 53 | 3 | 30 | 123 | 21 | 116 | 3.12e-19 | 80.1 |
| Msa0424140 | AT3G27200.1 | 35.537 | 121 | 73 | 4 | 10 | 126 | 3 | 122 | 2.05e-18 | 76.6 |
| Msa0424140 | AT2G44790.1 | 40.741 | 108 | 54 | 5 | 24 | 126 | 23 | 125 | 2.80e-17 | 74.3 |
| Msa0424140 | AT3G60270.1 | 37.113 | 97 | 57 | 3 | 30 | 123 | 23 | 118 | 9.35e-17 | 72.8 |
| Msa0424140 | AT2G25060.1 | 33.613 | 119 | 71 | 3 | 16 | 126 | 14 | 132 | 2.21e-16 | 71.6 |
| Msa0424140 | AT2G31050.1 | 33.913 | 115 | 71 | 3 | 17 | 126 | 12 | 126 | 1.43e-15 | 69.7 |
| Msa0424140 | AT2G26720.1 | 31.405 | 121 | 78 | 3 | 11 | 126 | 6 | 126 | 3.48e-15 | 68.9 |
| Msa0424140 | AT4G31840.1 | 29.134 | 127 | 82 | 3 | 8 | 126 | 2 | 128 | 5.50e-15 | 67.8 |
| Msa0424140 | AT1G72230.1 | 36.207 | 116 | 68 | 4 | 11 | 123 | 3 | 115 | 1.38e-14 | 67.0 |
| Msa0424140 | AT3G20570.1 | 30.952 | 126 | 80 | 3 | 4 | 123 | 2 | 126 | 3.93e-13 | 63.5 |
| Msa0424140 | AT5G20230.1 | 34.000 | 100 | 60 | 2 | 33 | 126 | 25 | 124 | 7.06e-13 | 62.8 |
| Msa0424140 | AT1G22480.1 | 37.931 | 116 | 63 | 5 | 12 | 123 | 1 | 111 | 1.44e-12 | 61.6 |
| Msa0424140 | AT4G30590.1 | 28.571 | 126 | 79 | 3 | 12 | 126 | 4 | 129 | 7.82e-12 | 59.7 |
| Msa0424140 | AT2G27035.1 | 32.500 | 120 | 60 | 6 | 16 | 123 | 12 | 122 | 1.28e-11 | 58.9 |
| Msa0424140 | AT5G15350.1 | 29.661 | 118 | 75 | 3 | 14 | 123 | 6 | 123 | 2.20e-11 | 58.2 |
| Msa0424140 | AT3G18590.1 | 28.926 | 121 | 73 | 6 | 13 | 123 | 7 | 124 | 3.74e-11 | 58.2 |
Find 67 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGTTATTTAATTTATA+TGG | 0.223296 | 3_2:+74356085 | None:intergenic |
| AAGATCCCTTTGTTTGTTTA+CGG | 0.244966 | 3_2:-74355882 | Msa0424140:three_prime_UTR |
| TGAAAACTTGAAATTATTTA+CGG | 0.262358 | 3_2:+74355822 | None:intergenic |
| TTTGGTGATCAATATGTAAA+AGG | 0.277801 | 3_2:-74356034 | Msa0424140:three_prime_UTR |
| AGACTTATCCCTTTATATAA+TGG | 0.283252 | 3_2:+74356822 | None:intergenic |
| GTAGTTAATTAGTTAATTAA+TGG | 0.284468 | 3_2:-74356142 | Msa0424140:three_prime_UTR |
| ACACAATATTAAAACACTTT+TGG | 0.288556 | 3_2:-74356872 | Msa0424140:five_prime_UTR |
| CTACTAGCTATATGTTGATT+TGG | 0.303864 | 3_2:-74356052 | Msa0424140:three_prime_UTR |
| AATTAATAAAACTTCCGTTT+TGG | 0.318991 | 3_2:-74355787 | Msa0424140:three_prime_UTR |
| TCATCAATTCCATTATATAA+AGG | 0.321055 | 3_2:-74356831 | Msa0424140:five_prime_UTR |
| TATCCTGGTCACTGCCAATC+TGG | 0.329505 | 3_2:-74356219 | Msa0424140:CDS |
| GTCCTCTTGATAGCCTGATT+TGG | 0.349417 | 3_2:+74356262 | None:intergenic |
| CATCAATTCCATTATATAAA+GGG | 0.362055 | 3_2:-74356830 | Msa0424140:five_prime_UTR |
| AAAACTGATACTTGGCCTAA+TGG | 0.367231 | 3_2:-74356590 | Msa0424140:CDS |
| GGTGCTAAAGTGTTCAGTTC+AGG | 0.375248 | 3_2:-74356291 | Msa0424140:CDS |
| CATATTCTCACTATTTCTCT+TGG | 0.410921 | 3_2:+74356739 | None:intergenic |
| AGAGGACTAAACTGCATAGA+TGG | 0.414690 | 3_2:+74356185 | None:intergenic |
| CATCTCACTAGAATTGCTAT+AGG | 0.429228 | 3_2:-74356777 | Msa0424140:five_prime_UTR |
| GTTCAGGGAGTGACCAAATC+AGG | 0.435888 | 3_2:-74356275 | Msa0424140:CDS |
| TCTTACACCGTTGGAGGACC+TGG | 0.442628 | 3_2:-74356626 | Msa0424140:CDS |
| TAAATAACAGCATGAGTACT+AGG | 0.453436 | 3_2:-74356075 | Msa0424140:three_prime_UTR |
| TTCTAGTGAGATGGTTGAGT+TGG | 0.453959 | 3_2:+74356787 | None:intergenic |
| GATGGTTGAGTTGGTTTGCA+AGG | 0.474704 | 3_2:+74356796 | None:intergenic |
| CACTTTCAGCCAGAAACAAA+AGG | 0.476546 | 3_2:+74356660 | None:intergenic |
| TACTTCATATGCAGCTATCC+TGG | 0.478585 | 3_2:-74356234 | Msa0424140:CDS |
| GAGAATATGACTGAGGGAAG+AGG | 0.490305 | 3_2:-74356725 | Msa0424140:exon |
| ATCCTGGTCACTGCCAATCT+GGG | 0.503016 | 3_2:-74356218 | Msa0424140:CDS |
| TGATGAATCTGTTGAGCTAT+GGG | 0.512228 | 3_2:+74356848 | None:intergenic |
| GTGCTAAAGTGTTCAGTTCA+GGG | 0.512300 | 3_2:-74356290 | Msa0424140:CDS |
| TTGATGAATCTGTTGAGCTA+TGG | 0.522374 | 3_2:+74356847 | None:intergenic |
| ATCCCAGATTGGCAGTGACC+AGG | 0.530524 | 3_2:+74356216 | None:intergenic |
| TAATGGTCAATTAGCTGTAG+TGG | 0.537805 | 3_2:-74356125 | Msa0424140:three_prime_UTR |
| GGACATACAAAACTGATACT+TGG | 0.540585 | 3_2:-74356598 | Msa0424140:CDS |
| TGGAAACCTTCATCCCAGAT+TGG | 0.543764 | 3_2:+74356205 | None:intergenic |
| TCTCACAAGCAGGGATAGGT+TGG | 0.544854 | 3_2:+74356912 | None:intergenic |
| CACAAGCAGGGATAGGTTGG+TGG | 0.545157 | 3_2:+74356915 | None:intergenic |
| TCACTGCCAATCTGGGATGA+AGG | 0.545313 | 3_2:-74356211 | Msa0424140:CDS |
| TGGATCTCACAAGCAGGGAT+AGG | 0.547940 | 3_2:+74356908 | None:intergenic |
| CTTAGACCGTAAACAAACAA+AGG | 0.558115 | 3_2:+74355876 | None:intergenic |
| TTAGACCGTAAACAAACAAA+GGG | 0.559350 | 3_2:+74355877 | None:intergenic |
| GCAGCATCTTACACCGTTGG+AGG | 0.574303 | 3_2:-74356632 | Msa0424140:CDS |
| CTATAGCAATTCTAGTGAGA+TGG | 0.575116 | 3_2:+74356778 | None:intergenic |
| CTGAACACTTTAGCACCTCC+CGG | 0.578857 | 3_2:+74356297 | None:intergenic |
| AATGCAGCATCTTACACCGT+TGG | 0.578987 | 3_2:-74356635 | Msa0424140:CDS |
| GTGGTTGCTGTGGACAAAAG+TGG | 0.581034 | 3_2:-74356339 | Msa0424140:CDS |
| AATAGTGAGAATATGACTGA+GGG | 0.586297 | 3_2:-74356731 | Msa0424140:exon |
| CTTACACCGTTGGAGGACCT+GGG | 0.588429 | 3_2:-74356625 | Msa0424140:CDS |
| GAAAATCTGAGGGACCAAAA+CGG | 0.589382 | 3_2:+74355773 | None:intergenic |
| AAATAGTGAGAATATGACTG+AGG | 0.592419 | 3_2:-74356732 | Msa0424140:exon |
| ATCAATATGTAAAAGGAGTG+TGG | 0.597954 | 3_2:-74356027 | Msa0424140:three_prime_UTR |
| ATATTGTGGATCTCACAAGC+AGG | 0.598727 | 3_2:+74356902 | None:intergenic |
| CACACACAATGTGGTTGCTG+TGG | 0.614940 | 3_2:-74356349 | Msa0424140:CDS |
| GTAAAAGGAGTGTGGTGAGG+TGG | 0.622991 | 3_2:-74356019 | Msa0424140:three_prime_UTR |
| TAGTCAAGTCACATAGCTAG+AGG | 0.624989 | 3_2:+74356167 | None:intergenic |
| TACAACAACTGTAAGACACC+GGG | 0.625426 | 3_2:-74356315 | Msa0424140:CDS |
| TTACACCGTTGGAGGACCTG+GGG | 0.632787 | 3_2:-74356624 | Msa0424140:CDS |
| TATTGTGGATCTCACAAGCA+GGG | 0.635490 | 3_2:+74356903 | None:intergenic |
| AGGCAGTGCATCTATGAACA+TGG | 0.647845 | 3_2:-74356705 | Msa0424140:CDS |
| ATTGTGTAGATTGAATATTG+TGG | 0.652337 | 3_2:+74356888 | None:intergenic |
| GACCAAATCAGGCTATCAAG+AGG | 0.658515 | 3_2:-74356264 | Msa0424140:CDS |
| TGATTCAACCACACACAATG+TGG | 0.661122 | 3_2:-74356358 | Msa0424140:CDS |
| ATACAACAACTGTAAGACAC+CGG | 0.661265 | 3_2:-74356316 | Msa0424140:CDS |
| CACAGCAACCACATTGTGTG+TGG | 0.666724 | 3_2:+74356350 | None:intergenic |
| TACACCGTTGGAGGACCTGG+GGG | 0.694377 | 3_2:-74356623 | Msa0424140:CDS |
| TATGTAAAAGGAGTGTGGTG+AGG | 0.701233 | 3_2:-74356022 | Msa0424140:three_prime_UTR |
| AACAACTGTAAGACACCGGG+AGG | 0.711932 | 3_2:-74356312 | Msa0424140:CDS |
| GATGAATCTGTTGAGCTATG+GGG | 0.740755 | 3_2:+74356849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGAGAAATATAGTTT+TGG | + | chr3_2:74356308-74356327 | None:intergenic | 15.0% |
| !!! | TCAATTTTACAAAATTGTTT+TGG | - | chr3_2:74356320-74356339 | Msa0424140:CDS | 15.0% |
| !! | GTAGTTAATTAGTTAATTAA+TGG | - | chr3_2:74356624-74356643 | Msa0424140:CDS | 15.0% |
| !!! | ATGCTGTTATTTAATTTATA+TGG | + | chr3_2:74356684-74356703 | None:intergenic | 15.0% |
| !!! | TTTTGGTTTATTTAATTCAT+TGG | - | chr3_2:74356919-74356938 | Msa0424140:five_prime_UTR | 15.0% |
| !! | TGAAAACTTGAAATTATTTA+CGG | + | chr3_2:74356947-74356966 | None:intergenic | 15.0% |
| !!! | AAAATTGAGAAATATAGTTT+TGG | + | chr3_2:74356308-74356327 | None:intergenic | 15.0% |
| !!! | TCAATTTTACAAAATTGTTT+TGG | - | chr3_2:74356320-74356339 | Msa0424140:CDS | 15.0% |
| !! | GTAGTTAATTAGTTAATTAA+TGG | - | chr3_2:74356624-74356643 | Msa0424140:CDS | 15.0% |
| !!! | ATGCTGTTATTTAATTTATA+TGG | + | chr3_2:74356684-74356703 | None:intergenic | 15.0% |
| !!! | TTTTGGTTTATTTAATTCAT+TGG | - | chr3_2:74356919-74356938 | Msa0424140:five_prime_UTR | 15.0% |
| !! | TGAAAACTTGAAATTATTTA+CGG | + | chr3_2:74356947-74356966 | None:intergenic | 15.0% |
| !!! | ACACAATATTAAAACACTTT+TGG | - | chr3_2:74355894-74355913 | Msa0424140:three_prime_UTR | 20.0% |
| !! | TCATCAATTCCATTATATAA+AGG | - | chr3_2:74355935-74355954 | Msa0424140:three_prime_UTR | 20.0% |
| !! | CATCAATTCCATTATATAAA+GGG | - | chr3_2:74355936-74355955 | Msa0424140:three_prime_UTR | 20.0% |
| !! | TAATTTAATTACCGTACAAT+TGG | - | chr3_2:74356268-74356287 | Msa0424140:CDS | 20.0% |
| !! | AATTTAATTACCGTACAATT+GGG | - | chr3_2:74356269-74356288 | Msa0424140:CDS | 20.0% |
| !! | ACTTTAATTATATGTGCATA+TGG | - | chr3_2:74356359-74356378 | Msa0424140:CDS | 20.0% |
| !!! | AATTAATAAAACTTCCGTTT+TGG | - | chr3_2:74356979-74356998 | Msa0424140:five_prime_UTR | 20.0% |
| !!! | ACACAATATTAAAACACTTT+TGG | - | chr3_2:74355894-74355913 | Msa0424140:three_prime_UTR | 20.0% |
| !! | TCATCAATTCCATTATATAA+AGG | - | chr3_2:74355935-74355954 | Msa0424140:three_prime_UTR | 20.0% |
| !! | CATCAATTCCATTATATAAA+GGG | - | chr3_2:74355936-74355955 | Msa0424140:three_prime_UTR | 20.0% |
| !! | TAATTTAATTACCGTACAAT+TGG | - | chr3_2:74356268-74356287 | Msa0424140:CDS | 20.0% |
| !! | AATTTAATTACCGTACAATT+GGG | - | chr3_2:74356269-74356288 | Msa0424140:CDS | 20.0% |
| !! | ACTTTAATTATATGTGCATA+TGG | - | chr3_2:74356359-74356378 | Msa0424140:CDS | 20.0% |
| !!! | AATTAATAAAACTTCCGTTT+TGG | - | chr3_2:74356979-74356998 | Msa0424140:five_prime_UTR | 20.0% |
| ! | TTAAAAGAAAAAAAAGGGAG+AGG | - | chr3_2:74355785-74355804 | Msa0424140:three_prime_UTR | 25.0% |
| ! | ATTGTGTAGATTGAATATTG+TGG | + | chr3_2:74355881-74355900 | None:intergenic | 25.0% |
| ! | AGACTTATCCCTTTATATAA+TGG | + | chr3_2:74355947-74355966 | None:intergenic | 25.0% |
| !!! | GCTTTAAACTTTTTTCCATT+AGG | + | chr3_2:74356194-74356213 | None:intergenic | 25.0% |
| !! | AATGGAAAAAAGTTTAAAGC+TGG | - | chr3_2:74356194-74356213 | Msa0424140:CDS | 25.0% |
| !! | TTTGGTGATCAATATGTAAA+AGG | - | chr3_2:74356732-74356751 | Msa0424140:exon | 25.0% |
| !!! | TACGGTCTAAGTTTTTATTT+TGG | - | chr3_2:74356902-74356921 | Msa0424140:five_prime_UTR | 25.0% |
| !!! | ACGGAAGTTTTATTAATTGT+GGG | + | chr3_2:74356977-74356996 | None:intergenic | 25.0% |
| !!! | AACGGAAGTTTTATTAATTG+TGG | + | chr3_2:74356978-74356997 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTTTCTTTTAACT+GGG | + | chr3_2:74355783-74355802 | None:intergenic | 25.0% |
| !!! | TCCCTTTTTTTTCTTTTAAC+TGG | + | chr3_2:74355784-74355803 | None:intergenic | 25.0% |
| ! | TTAAAAGAAAAAAAAGGGAG+AGG | - | chr3_2:74355785-74355804 | Msa0424140:three_prime_UTR | 25.0% |
| ! | ATTGTGTAGATTGAATATTG+TGG | + | chr3_2:74355881-74355900 | None:intergenic | 25.0% |
| ! | AGACTTATCCCTTTATATAA+TGG | + | chr3_2:74355947-74355966 | None:intergenic | 25.0% |
| !!! | GCTTTAAACTTTTTTCCATT+AGG | + | chr3_2:74356194-74356213 | None:intergenic | 25.0% |
| !! | AATGGAAAAAAGTTTAAAGC+TGG | - | chr3_2:74356194-74356213 | Msa0424140:CDS | 25.0% |
| !! | TTTGGTGATCAATATGTAAA+AGG | - | chr3_2:74356732-74356751 | Msa0424140:exon | 25.0% |
| !!! | TACGGTCTAAGTTTTTATTT+TGG | - | chr3_2:74356902-74356921 | Msa0424140:five_prime_UTR | 25.0% |
| !!! | ACGGAAGTTTTATTAATTGT+GGG | + | chr3_2:74356977-74356996 | None:intergenic | 25.0% |
| !!! | AACGGAAGTTTTATTAATTG+TGG | + | chr3_2:74356978-74356997 | None:intergenic | 25.0% |
| ! | TGGCTTTTCTTCATTAGTTA+AGG | + | chr3_2:74355834-74355853 | None:intergenic | 30.0% |
| ! | CATATTCTCACTATTTCTCT+TGG | + | chr3_2:74356030-74356049 | None:intergenic | 30.0% |
| AAATAGTGAGAATATGACTG+AGG | - | chr3_2:74356034-74356053 | Msa0424140:three_prime_UTR | 30.0% | |
| AATAGTGAGAATATGACTGA+GGG | - | chr3_2:74356035-74356054 | Msa0424140:three_prime_UTR | 30.0% | |
| CATCAAATATCCCAATTGTA+CGG | + | chr3_2:74356282-74356301 | None:intergenic | 30.0% | |
| TAAATAACAGCATGAGTACT+AGG | - | chr3_2:74356691-74356710 | Msa0424140:CDS | 30.0% | |
| ! | CTACTAGCTATATGTTGATT+TGG | - | chr3_2:74356714-74356733 | Msa0424140:CDS | 30.0% |
| ATCAATATGTAAAAGGAGTG+TGG | - | chr3_2:74356739-74356758 | Msa0424140:exon | 30.0% | |
| ! | AAGATCCCTTTGTTTGTTTA+CGG | - | chr3_2:74356884-74356903 | Msa0424140:five_prime_UTR | 30.0% |
| TTAGACCGTAAACAAACAAA+GGG | + | chr3_2:74356892-74356911 | None:intergenic | 30.0% | |
| ! | TGGCTTTTCTTCATTAGTTA+AGG | + | chr3_2:74355834-74355853 | None:intergenic | 30.0% |
| ! | CATATTCTCACTATTTCTCT+TGG | + | chr3_2:74356030-74356049 | None:intergenic | 30.0% |
| AAATAGTGAGAATATGACTG+AGG | - | chr3_2:74356034-74356053 | Msa0424140:three_prime_UTR | 30.0% | |
| AATAGTGAGAATATGACTGA+GGG | - | chr3_2:74356035-74356054 | Msa0424140:three_prime_UTR | 30.0% | |
| CATCAAATATCCCAATTGTA+CGG | + | chr3_2:74356282-74356301 | None:intergenic | 30.0% | |
| TAAATAACAGCATGAGTACT+AGG | - | chr3_2:74356691-74356710 | Msa0424140:CDS | 30.0% | |
| ! | CTACTAGCTATATGTTGATT+TGG | - | chr3_2:74356714-74356733 | Msa0424140:CDS | 30.0% |
| ATCAATATGTAAAAGGAGTG+TGG | - | chr3_2:74356739-74356758 | Msa0424140:exon | 30.0% | |
| ! | AAGATCCCTTTGTTTGTTTA+CGG | - | chr3_2:74356884-74356903 | Msa0424140:five_prime_UTR | 30.0% |
| TTAGACCGTAAACAAACAAA+GGG | + | chr3_2:74356892-74356911 | None:intergenic | 30.0% | |
| AAGAAAAAAAAGGGAGAGGA+TGG | - | chr3_2:74355789-74355808 | Msa0424140:three_prime_UTR | 35.0% | |
| TGATGAATCTGTTGAGCTAT+GGG | + | chr3_2:74355921-74355940 | None:intergenic | 35.0% | |
| TTGATGAATCTGTTGAGCTA+TGG | + | chr3_2:74355922-74355941 | None:intergenic | 35.0% | |
| CTATAGCAATTCTAGTGAGA+TGG | + | chr3_2:74355991-74356010 | None:intergenic | 35.0% | |
| CATCTCACTAGAATTGCTAT+AGG | - | chr3_2:74355989-74356008 | Msa0424140:three_prime_UTR | 35.0% | |
| GGACATACAAAACTGATACT+TGG | - | chr3_2:74356168-74356187 | Msa0424140:three_prime_UTR | 35.0% | |
| AAAACTGATACTTGGCCTAA+TGG | - | chr3_2:74356176-74356195 | Msa0424140:exon | 35.0% | |
| ATATGGCAATTGATTGTTGC+AGG | - | chr3_2:74356376-74356395 | Msa0424140:intron | 35.0% | |
| ATACAACAACTGTAAGACAC+CGG | - | chr3_2:74356450-74356469 | Msa0424140:intron | 35.0% | |
| TAATGGTCAATTAGCTGTAG+TGG | - | chr3_2:74356641-74356660 | Msa0424140:CDS | 35.0% | |
| CTTAGACCGTAAACAAACAA+AGG | + | chr3_2:74356893-74356912 | None:intergenic | 35.0% | |
| AAGAAAAAAAAGGGAGAGGA+TGG | - | chr3_2:74355789-74355808 | Msa0424140:three_prime_UTR | 35.0% | |
| TGATGAATCTGTTGAGCTAT+GGG | + | chr3_2:74355921-74355940 | None:intergenic | 35.0% | |
| TTGATGAATCTGTTGAGCTA+TGG | + | chr3_2:74355922-74355941 | None:intergenic | 35.0% | |
| CTATAGCAATTCTAGTGAGA+TGG | + | chr3_2:74355991-74356010 | None:intergenic | 35.0% | |
| CATCTCACTAGAATTGCTAT+AGG | - | chr3_2:74355989-74356008 | Msa0424140:three_prime_UTR | 35.0% | |
| GGACATACAAAACTGATACT+TGG | - | chr3_2:74356168-74356187 | Msa0424140:three_prime_UTR | 35.0% | |
| AAAACTGATACTTGGCCTAA+TGG | - | chr3_2:74356176-74356195 | Msa0424140:exon | 35.0% | |
| ATATGGCAATTGATTGTTGC+AGG | - | chr3_2:74356376-74356395 | Msa0424140:intron | 35.0% | |
| ATACAACAACTGTAAGACAC+CGG | - | chr3_2:74356450-74356469 | Msa0424140:intron | 35.0% | |
| TAATGGTCAATTAGCTGTAG+TGG | - | chr3_2:74356641-74356660 | Msa0424140:CDS | 35.0% | |
| CTTAGACCGTAAACAAACAA+AGG | + | chr3_2:74356893-74356912 | None:intergenic | 35.0% | |
| TATTGTGGATCTCACAAGCA+GGG | + | chr3_2:74355866-74355885 | None:intergenic | 40.0% | |
| ATATTGTGGATCTCACAAGC+AGG | + | chr3_2:74355867-74355886 | None:intergenic | 40.0% | |
| GATGAATCTGTTGAGCTATG+GGG | + | chr3_2:74355920-74355939 | None:intergenic | 40.0% | |
| TTCTAGTGAGATGGTTGAGT+TGG | + | chr3_2:74355982-74356001 | None:intergenic | 40.0% | |
| CACTTTCAGCCAGAAACAAA+AGG | + | chr3_2:74356109-74356128 | None:intergenic | 40.0% | |
| TGATTCAACCACACACAATG+TGG | - | chr3_2:74356408-74356427 | Msa0424140:intron | 40.0% | |
| TACAACAACTGTAAGACACC+GGG | - | chr3_2:74356451-74356470 | Msa0424140:intron | 40.0% | |
| ! | GTGCTAAAGTGTTCAGTTCA+GGG | - | chr3_2:74356476-74356495 | Msa0424140:intron | 40.0% |
| TACTTCATATGCAGCTATCC+TGG | - | chr3_2:74356532-74356551 | Msa0424140:intron | 40.0% | |
| AGAGGACTAAACTGCATAGA+TGG | + | chr3_2:74356584-74356603 | None:intergenic | 40.0% | |
| TAGTCAAGTCACATAGCTAG+AGG | + | chr3_2:74356602-74356621 | None:intergenic | 40.0% | |
| ! | TATGTAAAAGGAGTGTGGTG+AGG | - | chr3_2:74356744-74356763 | Msa0424140:five_prime_UTR | 40.0% |
| TATTGTGGATCTCACAAGCA+GGG | + | chr3_2:74355866-74355885 | None:intergenic | 40.0% | |
| ATATTGTGGATCTCACAAGC+AGG | + | chr3_2:74355867-74355886 | None:intergenic | 40.0% | |
| GATGAATCTGTTGAGCTATG+GGG | + | chr3_2:74355920-74355939 | None:intergenic | 40.0% | |
| TTCTAGTGAGATGGTTGAGT+TGG | + | chr3_2:74355982-74356001 | None:intergenic | 40.0% | |
| CACTTTCAGCCAGAAACAAA+AGG | + | chr3_2:74356109-74356128 | None:intergenic | 40.0% | |
| TGATTCAACCACACACAATG+TGG | - | chr3_2:74356408-74356427 | Msa0424140:intron | 40.0% | |
| TACAACAACTGTAAGACACC+GGG | - | chr3_2:74356451-74356470 | Msa0424140:intron | 40.0% | |
| ! | GTGCTAAAGTGTTCAGTTCA+GGG | - | chr3_2:74356476-74356495 | Msa0424140:intron | 40.0% |
| TACTTCATATGCAGCTATCC+TGG | - | chr3_2:74356532-74356551 | Msa0424140:intron | 40.0% | |
| AGAGGACTAAACTGCATAGA+TGG | + | chr3_2:74356584-74356603 | None:intergenic | 40.0% | |
| TAGTCAAGTCACATAGCTAG+AGG | + | chr3_2:74356602-74356621 | None:intergenic | 40.0% | |
| ! | TATGTAAAAGGAGTGTGGTG+AGG | - | chr3_2:74356744-74356763 | Msa0424140:five_prime_UTR | 40.0% |
| !! | GATGGTTGAGTTGGTTTGCA+AGG | + | chr3_2:74355973-74355992 | None:intergenic | 45.0% |
| GAGAATATGACTGAGGGAAG+AGG | - | chr3_2:74356041-74356060 | Msa0424140:three_prime_UTR | 45.0% | |
| AGGCAGTGCATCTATGAACA+TGG | - | chr3_2:74356061-74356080 | Msa0424140:three_prime_UTR | 45.0% | |
| !! | ACTGCTGTGCCTTTTGTTTC+TGG | - | chr3_2:74356097-74356116 | Msa0424140:three_prime_UTR | 45.0% |
| AATGCAGCATCTTACACCGT+TGG | - | chr3_2:74356131-74356150 | Msa0424140:three_prime_UTR | 45.0% | |
| ! | GGTGCTAAAGTGTTCAGTTC+AGG | - | chr3_2:74356475-74356494 | Msa0424140:intron | 45.0% |
| GACCAAATCAGGCTATCAAG+AGG | - | chr3_2:74356502-74356521 | Msa0424140:intron | 45.0% | |
| ! | GTCCTCTTGATAGCCTGATT+TGG | + | chr3_2:74356507-74356526 | None:intergenic | 45.0% |
| TGGAAACCTTCATCCCAGAT+TGG | + | chr3_2:74356564-74356583 | None:intergenic | 45.0% | |
| ! | TTTTTGTCGTGTGCTGTGTG+AGG | - | chr3_2:74356804-74356823 | Msa0424140:five_prime_UTR | 45.0% |
| !! | GATGGTTGAGTTGGTTTGCA+AGG | + | chr3_2:74355973-74355992 | None:intergenic | 45.0% |
| GAGAATATGACTGAGGGAAG+AGG | - | chr3_2:74356041-74356060 | Msa0424140:three_prime_UTR | 45.0% | |
| AGGCAGTGCATCTATGAACA+TGG | - | chr3_2:74356061-74356080 | Msa0424140:three_prime_UTR | 45.0% | |
| !! | ACTGCTGTGCCTTTTGTTTC+TGG | - | chr3_2:74356097-74356116 | Msa0424140:three_prime_UTR | 45.0% |
| AATGCAGCATCTTACACCGT+TGG | - | chr3_2:74356131-74356150 | Msa0424140:three_prime_UTR | 45.0% | |
| ! | GGTGCTAAAGTGTTCAGTTC+AGG | - | chr3_2:74356475-74356494 | Msa0424140:intron | 45.0% |
| GACCAAATCAGGCTATCAAG+AGG | - | chr3_2:74356502-74356521 | Msa0424140:intron | 45.0% | |
| ! | GTCCTCTTGATAGCCTGATT+TGG | + | chr3_2:74356507-74356526 | None:intergenic | 45.0% |
| TGGAAACCTTCATCCCAGAT+TGG | + | chr3_2:74356564-74356583 | None:intergenic | 45.0% | |
| ! | TTTTTGTCGTGTGCTGTGTG+AGG | - | chr3_2:74356804-74356823 | Msa0424140:five_prime_UTR | 45.0% |
| TCTCACAAGCAGGGATAGGT+TGG | + | chr3_2:74355857-74355876 | None:intergenic | 50.0% | |
| TGGATCTCACAAGCAGGGAT+AGG | + | chr3_2:74355861-74355880 | None:intergenic | 50.0% | |
| ! | GTTTTGTATGTCCATCCCCC+AGG | + | chr3_2:74356161-74356180 | None:intergenic | 50.0% |
| CACAGCAACCACATTGTGTG+TGG | + | chr3_2:74356419-74356438 | None:intergenic | 50.0% | |
| CACACACAATGTGGTTGCTG+TGG | - | chr3_2:74356417-74356436 | Msa0424140:intron | 50.0% | |
| GTGGTTGCTGTGGACAAAAG+TGG | - | chr3_2:74356427-74356446 | Msa0424140:intron | 50.0% | |
| AACAACTGTAAGACACCGGG+AGG | - | chr3_2:74356454-74356473 | Msa0424140:intron | 50.0% | |
| CTGAACACTTTAGCACCTCC+CGG | + | chr3_2:74356472-74356491 | None:intergenic | 50.0% | |
| GTTCAGGGAGTGACCAAATC+AGG | - | chr3_2:74356491-74356510 | Msa0424140:intron | 50.0% | |
| TATCCTGGTCACTGCCAATC+TGG | - | chr3_2:74356547-74356566 | Msa0424140:intron | 50.0% | |
| ATCCTGGTCACTGCCAATCT+GGG | - | chr3_2:74356548-74356567 | Msa0424140:intron | 50.0% | |
| ! | TCACTGCCAATCTGGGATGA+AGG | - | chr3_2:74356555-74356574 | Msa0424140:intron | 50.0% |
| ! | GTAAAAGGAGTGTGGTGAGG+TGG | - | chr3_2:74356747-74356766 | Msa0424140:five_prime_UTR | 50.0% |
| TCTCACAAGCAGGGATAGGT+TGG | + | chr3_2:74355857-74355876 | None:intergenic | 50.0% | |
| TGGATCTCACAAGCAGGGAT+AGG | + | chr3_2:74355861-74355880 | None:intergenic | 50.0% | |
| ! | GTTTTGTATGTCCATCCCCC+AGG | + | chr3_2:74356161-74356180 | None:intergenic | 50.0% |
| CACAGCAACCACATTGTGTG+TGG | + | chr3_2:74356419-74356438 | None:intergenic | 50.0% | |
| CACACACAATGTGGTTGCTG+TGG | - | chr3_2:74356417-74356436 | Msa0424140:intron | 50.0% | |
| GTGGTTGCTGTGGACAAAAG+TGG | - | chr3_2:74356427-74356446 | Msa0424140:intron | 50.0% | |
| AACAACTGTAAGACACCGGG+AGG | - | chr3_2:74356454-74356473 | Msa0424140:intron | 50.0% | |
| CTGAACACTTTAGCACCTCC+CGG | + | chr3_2:74356472-74356491 | None:intergenic | 50.0% | |
| GTTCAGGGAGTGACCAAATC+AGG | - | chr3_2:74356491-74356510 | Msa0424140:intron | 50.0% | |
| TATCCTGGTCACTGCCAATC+TGG | - | chr3_2:74356547-74356566 | Msa0424140:intron | 50.0% | |
| ATCCTGGTCACTGCCAATCT+GGG | - | chr3_2:74356548-74356567 | Msa0424140:intron | 50.0% | |
| ! | TCACTGCCAATCTGGGATGA+AGG | - | chr3_2:74356555-74356574 | Msa0424140:intron | 50.0% |
| ! | GTAAAAGGAGTGTGGTGAGG+TGG | - | chr3_2:74356747-74356766 | Msa0424140:five_prime_UTR | 50.0% |
| ! | CACAAGCAGGGATAGGTTGG+TGG | + | chr3_2:74355854-74355873 | None:intergenic | 55.0% |
| GCAGCATCTTACACCGTTGG+AGG | - | chr3_2:74356134-74356153 | Msa0424140:three_prime_UTR | 55.0% | |
| TCTTACACCGTTGGAGGACC+TGG | - | chr3_2:74356140-74356159 | Msa0424140:three_prime_UTR | 55.0% | |
| CTTACACCGTTGGAGGACCT+GGG | - | chr3_2:74356141-74356160 | Msa0424140:three_prime_UTR | 55.0% | |
| TTACACCGTTGGAGGACCTG+GGG | - | chr3_2:74356142-74356161 | Msa0424140:three_prime_UTR | 55.0% | |
| ATCCCAGATTGGCAGTGACC+AGG | + | chr3_2:74356553-74356572 | None:intergenic | 55.0% | |
| ! | CACAAGCAGGGATAGGTTGG+TGG | + | chr3_2:74355854-74355873 | None:intergenic | 55.0% |
| GCAGCATCTTACACCGTTGG+AGG | - | chr3_2:74356134-74356153 | Msa0424140:three_prime_UTR | 55.0% | |
| TCTTACACCGTTGGAGGACC+TGG | - | chr3_2:74356140-74356159 | Msa0424140:three_prime_UTR | 55.0% | |
| CTTACACCGTTGGAGGACCT+GGG | - | chr3_2:74356141-74356160 | Msa0424140:three_prime_UTR | 55.0% | |
| TTACACCGTTGGAGGACCTG+GGG | - | chr3_2:74356142-74356161 | Msa0424140:three_prime_UTR | 55.0% | |
| ATCCCAGATTGGCAGTGACC+AGG | + | chr3_2:74356553-74356572 | None:intergenic | 55.0% | |
| TACACCGTTGGAGGACCTGG+GGG | - | chr3_2:74356143-74356162 | Msa0424140:three_prime_UTR | 60.0% | |
| TACACCGTTGGAGGACCTGG+GGG | - | chr3_2:74356143-74356162 | Msa0424140:three_prime_UTR | 60.0% | |
| CCATCCCCCAGGTCCTCCAA+CGG | + | chr3_2:74356150-74356169 | None:intergenic | 65.0% | |
| CCATCCCCCAGGTCCTCCAA+CGG | + | chr3_2:74356150-74356169 | None:intergenic | 65.0% | |
| CCGTTGGAGGACCTGGGGGA+TGG | - | chr3_2:74356147-74356166 | Msa0424140:three_prime_UTR | 70.0% | |
| CCGTTGGAGGACCTGGGGGA+TGG | - | chr3_2:74356147-74356166 | Msa0424140:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 74355783 | 74357005 | 74355783 | ID=Msa0424140;Name=Msa0424140 |
| chr3_2 | mRNA | 74355783 | 74357005 | 74355783 | ID=Msa0424140-mRNA-1;Parent=Msa0424140;Name=Msa0424140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=264|1|1|1|1|1|2|408|126 |
| chr3_2 | exon | 74355783 | 74356390 | 74355783 | ID=Msa0424140-mRNA-1:exon:18725;Parent=Msa0424140-mRNA-1 |
| chr3_2 | exon | 74356561 | 74357005 | 74356561 | ID=Msa0424140-mRNA-1:exon:18724;Parent=Msa0424140-mRNA-1 |
| chr3_2 | five_prime_UTR | 74356742 | 74357005 | 74356742 | ID=Msa0424140-mRNA-1:five_prime_utr;Parent=Msa0424140-mRNA-1 |
| chr3_2 | CDS | 74356561 | 74356741 | 74356561 | ID=Msa0424140-mRNA-1:cds;Parent=Msa0424140-mRNA-1 |
| chr3_2 | CDS | 74356191 | 74356390 | 74356191 | ID=Msa0424140-mRNA-1:cds;Parent=Msa0424140-mRNA-1 |
| chr3_2 | three_prime_UTR | 74355783 | 74356190 | 74355783 | ID=Msa0424140-mRNA-1:three_prime_utr;Parent=Msa0424140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
