AlfalfaGEDB | Msa0428290

M. sativa cultivar zhongmu-4 / Msa0428290

KEGG: -
GO: GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016032 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0040011 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044000 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0046739 GO:0046741 GO:0046794 GO:0048285 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051302 GO:0051701 GO:0051704 GO:0051707 GO:0051814 GO:0052126 GO:0052192 GO:0065007 GO:0071840 GO:0098586 GO:0098588 GO:0098805 GO:1901700 GO:1902579
PFAM: PF06206.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428290	XP_003602739.1	97.026	269	6	1	1	269	1	267	0.0	543

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428290	sp\|Q9FI46\|CRL_ARATH	74.721	269	68	0	1	269	1	269	5.54e-155	435

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428290	G7J389	97.026	269	6	1	1	269	1	267	0.0	543

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0428290	0.800156	1.645108e-48	-8.615850e-47
Msa0024500	Msa0428290	0.814542	1.460801e-51	-8.615850e-47
Msa0027030	Msa0428290	0.801733	7.833934e-49	-8.615850e-47
Msa0037180	Msa0428290	-0.804693	1.910699e-49	-8.615850e-47
Msa0037650	Msa0428290	0.822444	2.360859e-53	-8.615850e-47
Msa0067750	Msa0428290	0.800396	1.469721e-48	-8.615850e-47
Msa0094900	Msa0428290	0.801587	8.394218e-49	-8.615850e-47
Msa0099090	Msa0428290	0.811031	8.578797e-51	-8.615850e-47
Msa0120320	Msa0428290	0.801507	8.715258e-49	-8.615850e-47
Msa0127910	Msa0428290	0.802433	5.624036e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428290	MtrunA17_Chr3g0131561	97.026	269	6	1	1	269	1	267	0.0	543

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428290	AT5G51020.1	74.721	269	68	0	1	269	1	269	5.63e-156	435

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Find 116 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTATCATTAAAACAGG+AGG	0.650601	3_2:-79122821	None:intergenic
AAATGTCCTATATTATGAGC+AGG	0.561090	3_2:+79119904	Msa0428290:CDS
AAATTTCTGTGATCGGCCAA+AGG	0.621478	3_2:+79121158	Msa0428290:CDS
AAGAAGCTTAGTATTGATAG+AGG	0.542825	3_2:+79123146	Msa0428290:three_prime_UTR
AAGCAGCCAAATAGCGAGGG+CGG	0.659908	3_2:-79119332	None:intergenic
AAGGCTCTCTTACTCCTCGG+TGG	0.681352	3_2:+79119531	Msa0428290:CDS
AATGGATGGAATCGTGCTCA+AGG	0.565023	3_2:+79119498	Msa0428290:CDS
AATTAGGAAATCCTCCGGGT+GGG	0.600949	3_2:-79122445	None:intergenic
ACAACCAGAAGAAGTCATTG+GGG	0.750751	3_2:+79121191	Msa0428290:CDS
ACATCACATTTCAACTCTTT+TGG	0.197133	3_2:-79120246	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAAGAACTAATCATGGA+TGG	-	chr3_2:79119393-79119412	None:intergenic	30.0%
ATTGGAATTGGAATTGGAAT+CGG	-	chr3_2:79119481-79119500	None:intergenic	30.0%
TCAATTCAATTCTTCATCCA+TGG	+	chr3_2:79119690-79119709	Msa0428290:intron	30.0%
AAATGTCCTATATTATGAGC+AGG	+	chr3_2:79119904-79119923	Msa0428290:CDS	30.0%
ATATATATAGTCTACCAACC+TGG	-	chr3_2:79120062-79120081	None:intergenic	30.0%
ATTAGCTAATGACCTAAAGT+TGG	-	chr3_2:79120326-79120345	None:intergenic	30.0%
CTTAGAATTAAGTCCTAGAA+TGG	-	chr3_2:79120697-79120716	None:intergenic	30.0%
TAATGATAAACTCCCTCTAT+GGG	-	chr3_2:79120724-79120743	None:intergenic	30.0%
ATAATGATAAACTCCCTCTA+TGG	-	chr3_2:79120725-79120744	None:intergenic	30.0%
TAATATTTACATCTTGGGCA+TGG	-	chr3_2:79120965-79120984	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	79119158	79123284	79119158	ID=Msa0428290;Name=Msa0428290
chr3_2	mRNA	79119158	79123284	79119158	ID=Msa0428290-mRNA-1;Parent=Msa0428290;Name=Msa0428290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=301\|1\|1\|1\|1\|1\|9\|369\|269
chr3_2	exon	79119158	79119638	79119158	ID=Msa0428290-mRNA-1:exon:21229;Parent=Msa0428290-mRNA-1
chr3_2	exon	79119721	79119770	79119721	ID=Msa0428290-mRNA-1:exon:21230;Parent=Msa0428290-mRNA-1
chr3_2	exon	79119865	79119925	79119865	ID=Msa0428290-mRNA-1:exon:21231;Parent=Msa0428290-mRNA-1
chr3_2	exon	79120027	79120062	79120027	ID=Msa0428290-mRNA-1:exon:21232;Parent=Msa0428290-mRNA-1
chr3_2	exon	79120222	79120272	79120222	ID=Msa0428290-mRNA-1:exon:21233;Parent=Msa0428290-mRNA-1
chr3_2	exon	79121120	79121212	79121120	ID=Msa0428290-mRNA-1:exon:21234;Parent=Msa0428290-mRNA-1
chr3_2	exon	79122368	79122472	79122368	ID=Msa0428290-mRNA-1:exon:21235;Parent=Msa0428290-mRNA-1
chr3_2	exon	79122560	79122652	79122560	ID=Msa0428290-mRNA-1:exon:21236;Parent=Msa0428290-mRNA-1
chr3_2	exon	79122775	79123284	79122775	ID=Msa0428290-mRNA-1:exon:21237;Parent=Msa0428290-mRNA-1
chr3_2	five_prime_UTR	79119158	79119458	79119158	ID=Msa0428290-mRNA-1:five_prime_utr;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79119459	79119638	79119459	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79119721	79119770	79119721	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79119865	79119925	79119865	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79120027	79120062	79120027	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79120222	79120272	79120222	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79121120	79121212	79121120	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79122368	79122472	79122368	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79122560	79122652	79122560	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	CDS	79122775	79122915	79122775	ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1
chr3_2	three_prime_UTR	79122916	79123284	79122916	ID=Msa0428290-mRNA-1:three_prime_utr;Parent=Msa0428290-mRNA-1

Gene Sequence

>Msa0428290

ATGTGTACGGAATCCGAATCCGATTCCAATTCCAATTCCAATGGATGGAATCGTGCTCAAGGATTAGCTCTCAAGGCTCTCTTACTCCTCGGTGGCGCTCTTCTCGTCAAACGTCTTCGTAAGTCTACCACTCGCTGGGACCATACTCGTTTAGTCACTCAATCACTCACCGGCGAAAAGTATTCCAAGGACCAAGCTTCTAGAGACCCTGATAACTATTTCAATATTAGAATGCTTACATGTCCAGCTGCTGAGCTAGTTGATGGTTCAAATGTCCTATATTATGAGCAGGCTTTTTGGAGGAGTCCACAGAAACCCTTTCGCCAGAGGCTGTTAATGACGAAACCTTGTCCAAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATCAGAGACATGGAGGAATACAAAAATTTCTGTGATCGGCCAAAGGATCAGCGCCCACAACCAGAAGAAGTCATTGGGGATATTGGAGAACATTTGACAACGATACATCTCAAGCGTTGTTCACGTGGAAAACGCTGCTTATATGAAGGTTCAACCCCACCCGGAGGATTTCCTAATTCATGGAATGGAGCAACCTACTGTACTTCAGAACTTGCGGTTATGAAGAACAATGAGATACACACCTGGGATCGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGTCCTTACGAGTTCAAGCCTGCACCGACCTCCTGTTTTAATGATACATTTTCGCCCTTGAATTTCCCCCCTCCACCACCCATGGATAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAATGA

Protein sequence

>Msa0428290

MCTESESDSNSNSNGWNRAQGLALKALLLLGGALLVKRLRKSTTRWDHTRLVTQSLTGEKYSKDQASRDPDNYFNIRMLTCPAAELVDGSNVLYYEQAFWRSPQKPFRQRLLMTKPCPKELKCDVELSTYAIRDMEEYKNFCDRPKDQRPQPEEVIGDIGEHLTTIHLKRCSRGKRCLYEGSTPPGGFPNSWNGATYCTSELAVMKNNEIHTWDRGYDDDGNQVWGQKEGPYEFKPAPTSCFNDTFSPLNFPPPPPMDRRIEGSFVLQE*