Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428290 | XP_003602739.1 | 97.026 | 269 | 6 | 1 | 1 | 269 | 1 | 267 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428290 | sp|Q9FI46|CRL_ARATH | 74.721 | 269 | 68 | 0 | 1 | 269 | 1 | 269 | 5.54e-155 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428290 | G7J389 | 97.026 | 269 | 6 | 1 | 1 | 269 | 1 | 267 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0428290 | 0.800156 | 1.645108e-48 | -8.615850e-47 |
| Msa0024500 | Msa0428290 | 0.814542 | 1.460801e-51 | -8.615850e-47 |
| Msa0027030 | Msa0428290 | 0.801733 | 7.833934e-49 | -8.615850e-47 |
| Msa0037180 | Msa0428290 | -0.804693 | 1.910699e-49 | -8.615850e-47 |
| Msa0037650 | Msa0428290 | 0.822444 | 2.360859e-53 | -8.615850e-47 |
| Msa0067750 | Msa0428290 | 0.800396 | 1.469721e-48 | -8.615850e-47 |
| Msa0094900 | Msa0428290 | 0.801587 | 8.394218e-49 | -8.615850e-47 |
| Msa0099090 | Msa0428290 | 0.811031 | 8.578797e-51 | -8.615850e-47 |
| Msa0120320 | Msa0428290 | 0.801507 | 8.715258e-49 | -8.615850e-47 |
| Msa0127910 | Msa0428290 | 0.802433 | 5.624036e-49 | -8.615850e-47 |
| Msa0138340 | Msa0428290 | 0.807416 | 5.108110e-50 | -8.615850e-47 |
| Msa0147960 | Msa0428290 | 0.802474 | 5.514211e-49 | -8.615850e-47 |
| Msa0174060 | Msa0428290 | 0.816459 | 5.469495e-52 | -8.615850e-47 |
| Msa0178440 | Msa0428290 | 0.800290 | 1.544455e-48 | -8.615850e-47 |
| Msa0194750 | Msa0428290 | 0.820497 | 6.647948e-53 | -8.615850e-47 |
| Msa0216150 | Msa0428290 | 0.808194 | 3.492011e-50 | -8.615850e-47 |
| Msa0225070 | Msa0428290 | 0.821650 | 3.607805e-53 | -8.615850e-47 |
| Msa0236690 | Msa0428290 | 0.826017 | 3.415954e-54 | -8.615850e-47 |
| Msa0390590 | Msa0428290 | 0.804389 | 2.211873e-49 | -8.615850e-47 |
| Msa0428290 | Msa0519080 | 0.928775 | 1.790327e-92 | -8.615850e-47 |
| Msa0428290 | Msa0527210 | 0.803691 | 3.089317e-49 | -8.615850e-47 |
| Msa0428290 | Msa0538050 | 0.818015 | 2.443814e-52 | -8.615850e-47 |
| Msa0428290 | Msa0602320 | 0.804954 | 1.685501e-49 | -8.615850e-47 |
| Msa0428290 | Msa0639530 | 0.804720 | 1.886561e-49 | -8.615850e-47 |
| Msa0428290 | Msa0672980 | -0.801508 | 8.710950e-49 | -8.615850e-47 |
| Msa0428290 | Msa0691740 | 0.800352 | 1.500416e-48 | -8.615850e-47 |
| Msa0428290 | Msa0754020 | 0.807269 | 5.489497e-50 | -8.615850e-47 |
| Msa0428290 | Msa0807100 | 0.809294 | 2.031766e-50 | -8.615850e-47 |
| Msa0428290 | Msa0807870 | 0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0428290 | Msa0844970 | 0.813080 | 3.067089e-51 | -8.615850e-47 |
| Msa0428290 | Msa0924690 | 0.818171 | 2.252919e-52 | -8.615850e-47 |
| Msa0428290 | Msa0925630 | 0.800506 | 1.396086e-48 | -8.615850e-47 |
| Msa0428290 | Msa0934290 | 0.808900 | 2.467328e-50 | -8.615850e-47 |
| Msa0428290 | Msa0963800 | 0.811323 | 7.415685e-51 | -8.615850e-47 |
| Msa0428290 | Msa0967900 | 0.817075 | 3.980104e-52 | -8.615850e-47 |
| Msa0428290 | Msa0971780 | 0.803926 | 2.760255e-49 | -8.615850e-47 |
| Msa0428290 | Msa1004300 | 0.817259 | 3.617982e-52 | -8.615850e-47 |
| Msa0428290 | Msa1056590 | 0.825349 | 4.920877e-54 | -8.615850e-47 |
| Msa0428290 | Msa1093190 | 0.801444 | 8.979164e-49 | -8.615850e-47 |
| Msa0428290 | Msa1134420 | 0.814215 | 1.725754e-51 | -8.615850e-47 |
| Msa0428290 | Msa1205270 | 0.805143 | 1.538904e-49 | -8.615850e-47 |
| Msa0428290 | Msa1269370 | 0.800437 | 1.442202e-48 | -8.615850e-47 |
| Msa0428290 | Msa1323260 | 0.811201 | 7.880782e-51 | -8.615850e-47 |
| Msa0428290 | Msa1327690 | 0.805000 | 1.649107e-49 | -8.615850e-47 |
| Msa0428290 | Msa1348860 | 0.800318 | 1.524481e-48 | -8.615850e-47 |
| Msa0428290 | Msa1371060 | 0.821016 | 5.051278e-53 | -8.615850e-47 |
| Msa0428290 | Msa1371540 | 0.805358 | 1.387102e-49 | -8.615850e-47 |
| Msa0428290 | Msa1382100 | 0.819901 | 9.102510e-53 | -8.615850e-47 |
| Msa0428290 | Msa1384410 | 0.812136 | 4.935405e-51 | -8.615850e-47 |
| Msa0428290 | Msa1398450 | 0.812927 | 3.314458e-51 | -8.615850e-47 |
| Msa0428290 | Msa1408860 | 0.809053 | 2.287998e-50 | -8.615850e-47 |
| Msa0428290 | Msa1414780 | 0.805845 | 1.096704e-49 | -8.615850e-47 |
| Msa0269660 | Msa0428290 | 0.820056 | 8.389206e-53 | -8.615850e-47 |
| Msa0275560 | Msa0428290 | -0.801057 | 1.077313e-48 | -8.615850e-47 |
| Msa0304350 | Msa0428290 | 0.807951 | 3.932489e-50 | -8.615850e-47 |
| Msa0305910 | Msa0428290 | 0.808891 | 2.477858e-50 | -8.615850e-47 |
| Msa0334450 | Msa0428290 | 0.801468 | 8.877313e-49 | -8.615850e-47 |
| Msa0340830 | Msa0428290 | 0.809068 | 2.271854e-50 | -8.615850e-47 |
| Msa0340870 | Msa0428290 | 0.810674 | 1.025187e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428290 | MtrunA17_Chr3g0131561 | 97.026 | 269 | 6 | 1 | 1 | 269 | 1 | 267 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428290 | AT5G51020.1 | 74.721 | 269 | 68 | 0 | 1 | 269 | 1 | 269 | 5.63e-156 | 435 |
Find 116 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAACTATTTCAATATT+AGG | 0.173231 | 3_2:+79119749 | Msa0428290:CDS |
| ACATCACATTTCAACTCTTT+TGG | 0.197133 | 3_2:-79120246 | None:intergenic |
| ACATTCTTATTGAGAATTCT+AGG | 0.223452 | 3_2:-79119268 | None:intergenic |
| TTAATATTCCTAGCATATTT+AGG | 0.228788 | 3_2:+79123091 | Msa0428290:three_prime_UTR |
| CTATCAATACTAAGCTTCTT+AGG | 0.241391 | 3_2:-79123143 | None:intergenic |
| CTGAAAATTACCCATGAATT+AGG | 0.256321 | 3_2:-79122461 | None:intergenic |
| TACTGTGATTTGCAGGATAT+TGG | 0.259019 | 3_2:+79122353 | Msa0428290:intron |
| TAATTCTGAGATTTGTCTTA+TGG | 0.266833 | 3_2:+79123211 | Msa0428290:three_prime_UTR |
| CTAATATTGAAATAGTTATC+AGG | 0.268130 | 3_2:-79119748 | None:intergenic |
| TTGTAGCCGCCCTCGCTATT+TGG | 0.279768 | 3_2:+79119326 | Msa0428290:five_prime_UTR |
| CTATCCATGGGTGGTGGAGG+GGG | 0.279858 | 3_2:-79122859 | None:intergenic |
| CCATCCATTGGAATTGGAAT+TGG | 0.287968 | 3_2:-79119484 | None:intergenic |
| AGTGGCTGAATTACACATTA+TGG | 0.303537 | 3_2:-79122931 | None:intergenic |
| CTTACCCCAATGACTTCTTC+TGG | 0.312832 | 3_2:-79121195 | None:intergenic |
| CCGGAGGATTTCCTAATTCA+TGG | 0.335715 | 3_2:+79122450 | Msa0428290:CDS |
| GGTTGTGGGCGCTGATCCTT+TGG | 0.340420 | 3_2:-79121174 | None:intergenic |
| TCTATCCATGGGTGGTGGAG+GGG | 0.351946 | 3_2:-79122860 | None:intergenic |
| GTTGTATGTTAGTTTCGTAT+TGG | 0.367128 | 3_2:-79119243 | None:intergenic |
| CTTCTATCCATGGGTGGTGG+AGG | 0.377445 | 3_2:-79122862 | None:intergenic |
| ACGATTCCATCCATTGGAAT+TGG | 0.380648 | 3_2:-79119490 | None:intergenic |
| ATTGGAATTGGAATCGGATT+CGG | 0.394244 | 3_2:-79119472 | None:intergenic |
| CAATGACTTCTTCTGGTTGT+GGG | 0.400932 | 3_2:-79121188 | None:intergenic |
| CGAAAATGTATCATTAAAAC+AGG | 0.408347 | 3_2:-79122824 | None:intergenic |
| CCAATGACTTCTTCTGGTTG+TGG | 0.410970 | 3_2:-79121189 | None:intergenic |
| TTCTATCCATGGGTGGTGGA+GGG | 0.418781 | 3_2:-79122861 | None:intergenic |
| TATCCATGGGTGGTGGAGGG+GGG | 0.424893 | 3_2:-79122858 | None:intergenic |
| TGAGATACACACCTGGGATC+GGG | 0.428241 | 3_2:+79122607 | Msa0428290:CDS |
| ATTGAGTGACTAAACGAGTA+TGG | 0.431325 | 3_2:-79119599 | None:intergenic |
| CACAACCAGAAGAAGTCATT+GGG | 0.431463 | 3_2:+79121190 | Msa0428290:CDS |
| ATTGGAATTGGAATTGGAAT+CGG | 0.432790 | 3_2:-79119478 | None:intergenic |
| CCAGCTGCTGAGCTAGTTGA+TGG | 0.433217 | 3_2:+79119878 | Msa0428290:CDS |
| GCTGGATTCTCCCTCATCTC+TGG | 0.443322 | 3_2:+79119171 | Msa0428290:five_prime_UTR |
| GTATTCCTCCATGTCTCTGA+TGG | 0.450638 | 3_2:-79121133 | None:intergenic |
| CCACAACCAGAAGAAGTCAT+TGG | 0.455535 | 3_2:+79121189 | Msa0428290:CDS |
| CCCTCTATTCTTCTATCCAT+GGG | 0.464009 | 3_2:-79122871 | None:intergenic |
| TTTGCAAGAATGAAAGTGTT+TGG | 0.465560 | 3_2:+79122903 | Msa0428290:exon |
| TTCGTAAGTCTACCACTCGC+TGG | 0.466778 | 3_2:+79119574 | Msa0428290:CDS |
| GTATTACTATGAATGTCAAT+TGG | 0.474165 | 3_2:+79123239 | Msa0428290:three_prime_UTR |
| ACCCTCTATTCTTCTATCCA+TGG | 0.474620 | 3_2:-79122872 | None:intergenic |
| GTCTCTAGAAGCTTGGTCCT+TGG | 0.474845 | 3_2:-79119725 | None:intergenic |
| ACCCATGGATAGAAGAATAG+AGG | 0.476052 | 3_2:+79122870 | Msa0428290:CDS |
| TTACGCCGTCCTTGCAATCA+TGG | 0.482817 | 3_2:-79123275 | None:intergenic |
| TTGAGCACGATTCCATCCAT+TGG | 0.487138 | 3_2:-79119496 | None:intergenic |
| ATAATAAGAAGAACTAATCA+TGG | 0.489884 | 3_2:-79119394 | None:intergenic |
| TCAATCACTCACCGGCGAAA+AGG | 0.492016 | 3_2:+79119617 | Msa0428290:CDS |
| TCCACAGAAACCCTTTCGCC+AGG | 0.496903 | 3_2:+79120041 | Msa0428290:CDS |
| CCATGAATTAGGAAATCCTC+CGG | 0.499492 | 3_2:-79122450 | None:intergenic |
| TGCTGACCTGCTCATAATAT+AGG | 0.501685 | 3_2:-79119910 | None:intergenic |
| TTAAAACAGGAGGTCGGTGC+AGG | 0.502222 | 3_2:-79122811 | None:intergenic |
| GCCGCACTTTCAACTTCTTG+TGG | 0.502949 | 3_2:+79119303 | Msa0428290:five_prime_UTR |
| GGCTCTACTCCACTCTAGAC+TGG | 0.513805 | 3_2:+79119192 | Msa0428290:five_prime_UTR |
| CCAATTCCAATTCCAATGGA+TGG | 0.514174 | 3_2:+79119484 | Msa0428290:CDS |
| AGAACTAATCATGGATGGAA+TGG | 0.518477 | 3_2:-79119385 | None:intergenic |
| ATGAGATACACACCTGGGAT+CGG | 0.518865 | 3_2:+79122606 | Msa0428290:CDS |
| GTGAAAGAAAATTGAACCGC+TGG | 0.521424 | 3_2:+79119153 | None:intergenic |
| CTCAAGGCTCTCTTACTCCT+CGG | 0.522394 | 3_2:+79119528 | Msa0428290:CDS |
| CGGAGGATTTCCTAATTCAT+GGG | 0.524055 | 3_2:+79122451 | Msa0428290:CDS |
| TGGAGTAGAGCCAGAGATGA+GGG | 0.525420 | 3_2:-79119181 | None:intergenic |
| ATTCTTCTATCCATGGGTGG+TGG | 0.536104 | 3_2:-79122865 | None:intergenic |
| AGTCTACCAACCTGGCGAAA+GGG | 0.540376 | 3_2:-79120051 | None:intergenic |
| AAGAAGCTTAGTATTGATAG+AGG | 0.542825 | 3_2:+79123146 | Msa0428290:three_prime_UTR |
| GATTCCAATTCCAATTCCAA+TGG | 0.544627 | 3_2:+79119480 | Msa0428290:CDS |
| TAAGAAGAACTAATCATGGA+TGG | 0.549712 | 3_2:-79119390 | None:intergenic |
| ATTAGGAAATCCTCCGGGTG+GGG | 0.554095 | 3_2:-79122444 | None:intergenic |
| GATCGGGGTTATGATGATGA+TGG | 0.554509 | 3_2:+79122623 | Msa0428290:CDS |
| CATCTCAAGCGTTGTTCACG+TGG | 0.558775 | 3_2:+79122395 | Msa0428290:CDS |
| ATCATCATAACCCCGATCCC+AGG | 0.559871 | 3_2:-79122618 | None:intergenic |
| AAATGTCCTATATTATGAGC+AGG | 0.561090 | 3_2:+79119904 | Msa0428290:CDS |
| TAATATTGAAATAGTTATCA+GGG | 0.562932 | 3_2:-79119747 | None:intergenic |
| TAGTCTACCAACCTGGCGAA+AGG | 0.563451 | 3_2:-79120052 | None:intergenic |
| CCATCAACTAGCTCAGCAGC+TGG | 0.564068 | 3_2:-79119878 | None:intergenic |
| AATGGATGGAATCGTGCTCA+AGG | 0.565023 | 3_2:+79119498 | Msa0428290:CDS |
| TCGTAAGTCTACCACTCGCT+GGG | 0.565666 | 3_2:+79119575 | Msa0428290:CDS |
| TGCTCAAGGATTAGCTCTCA+AGG | 0.565849 | 3_2:+79119512 | Msa0428290:CDS |
| GTTAGTTTCGTATTGGTCTG+TGG | 0.566299 | 3_2:-79119236 | None:intergenic |
| CCTATTCAATTGCAGGTTTG+GGG | 0.568547 | 3_2:+79122760 | Msa0428290:intron |
| TGTTGAGTGATTTCAGTGGA+TGG | 0.568671 | 3_2:-79119355 | None:intergenic |
| GTGGAGTAGAGCCAGAGATG+AGG | 0.569181 | 3_2:-79119182 | None:intergenic |
| TATCAGGGTCTCTAGAAGCT+TGG | 0.569477 | 3_2:-79119732 | None:intergenic |
| ACCTGGCGAAAGGGTTTCTG+TGG | 0.572687 | 3_2:-79120042 | None:intergenic |
| CATGGATATGCAGTATTCCA+AGG | 0.578376 | 3_2:+79119708 | Msa0428290:intron |
| TTCATTCATCCAGTCTAGAG+TGG | 0.581244 | 3_2:-79119201 | None:intergenic |
| GGTGCAGGCTTGAACTCGTA+AGG | 0.581581 | 3_2:-79122796 | None:intergenic |
| GGAAAACGCTGCTTATATGA+AGG | 0.583887 | 3_2:+79122416 | Msa0428290:CDS |
| TATGAAGGTTCAACCCCACC+CGG | 0.591979 | 3_2:+79122431 | Msa0428290:CDS |
| TACATATGCCATCAGAGACA+TGG | 0.594000 | 3_2:+79121125 | Msa0428290:CDS |
| GAGATACACACCTGGGATCG+GGG | 0.595929 | 3_2:+79122608 | Msa0428290:CDS |
| CTACTGTACTTCAGAACTTG+CGG | 0.598735 | 3_2:+79122571 | Msa0428290:CDS |
| AATTAGGAAATCCTCCGGGT+GGG | 0.600949 | 3_2:-79122445 | None:intergenic |
| CCCATGGATAGAAGAATAGA+GGG | 0.605217 | 3_2:+79122871 | Msa0428290:CDS |
| TCTATTCTTCTATCCATGGG+TGG | 0.613129 | 3_2:-79122868 | None:intergenic |
| CGCAAGTTCTGAAGTACAGT+AGG | 0.615332 | 3_2:-79122570 | None:intergenic |
| GAATTACATCGCAATTGTGA+AGG | 0.617806 | 3_2:-79123194 | None:intergenic |
| TTATATTGACAGATAGCAAG+TGG | 0.620752 | 3_2:-79122949 | None:intergenic |
| AAATTTCTGTGATCGGCCAA+AGG | 0.621478 | 3_2:+79121158 | Msa0428290:CDS |
| TGGAAGCAGCCAAATAGCGA+GGG | 0.625118 | 3_2:-79119335 | None:intergenic |
| ACGAGTATGGTCCCAGCGAG+TGG | 0.633200 | 3_2:-79119586 | None:intergenic |
| CTAGGAATATTAATCAAACC+CGG | 0.638689 | 3_2:-79123081 | None:intergenic |
| AAATGTATCATTAAAACAGG+AGG | 0.650601 | 3_2:-79122821 | None:intergenic |
| TTAGTCACTCAATCACTCAC+CGG | 0.659288 | 3_2:+79119609 | Msa0428290:CDS |
| AAGCAGCCAAATAGCGAGGG+CGG | 0.659908 | 3_2:-79119332 | None:intergenic |
| ACCACAAGAAGTTGAAAGTG+CGG | 0.660204 | 3_2:-79119304 | None:intergenic |
| ATGGAAGCAGCCAAATAGCG+AGG | 0.660716 | 3_2:-79119336 | None:intergenic |
| TGATTGTTGAGTGATTTCAG+TGG | 0.661881 | 3_2:-79119359 | None:intergenic |
| GTATCATTAAAACAGGAGGT+CGG | 0.664509 | 3_2:-79122817 | None:intergenic |
| GAATTAGGAAATCCTCCGGG+TGG | 0.668022 | 3_2:-79122446 | None:intergenic |
| CATGAATTAGGAAATCCTCC+GGG | 0.668389 | 3_2:-79122449 | None:intergenic |
| AGAGATGAGGGAGAATCCAG+CGG | 0.680219 | 3_2:-79119169 | None:intergenic |
| AAGGCTCTCTTACTCCTCGG+TGG | 0.681352 | 3_2:+79119531 | Msa0428290:CDS |
| AGAGTTGAAATGTGATGTTG+AGG | 0.695193 | 3_2:+79120251 | Msa0428290:CDS |
| AGAACAATGAGATACACACC+TGG | 0.699199 | 3_2:+79122600 | Msa0428290:CDS |
| GAACAATGAGATACACACCT+GGG | 0.705723 | 3_2:+79122601 | Msa0428290:CDS |
| ATATGCCATCAGAGACATGG+AGG | 0.729438 | 3_2:+79121128 | Msa0428290:CDS |
| GAAGGTTCAACCCCACCCGG+AGG | 0.739658 | 3_2:+79122434 | Msa0428290:CDS |
| ACAACCAGAAGAAGTCATTG+GGG | 0.750751 | 3_2:+79121191 | Msa0428290:CDS |
| TGACGAGAAGAGCGCCACCG+AGG | 0.753935 | 3_2:-79119545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAATATTTACATCTT+GGG | - | chr3_2:79120970-79120989 | None:intergenic | 10.0% |
| !!! | TAATAATTTTACAATAAAGT+AGG | + | chr3_2:79121401-79121420 | Msa0428290:intron | 10.0% |
| !!! | AATAATTTTACAATAAAGTA+GGG | + | chr3_2:79121402-79121421 | Msa0428290:intron | 10.0% |
| !! | TAATATTGAAATAGTTATCA+GGG | - | chr3_2:79119750-79119769 | None:intergenic | 15.0% |
| !!! | TTCTTCTGAAAATTTTTATT+TGG | + | chr3_2:79120081-79120100 | Msa0428290:intron | 15.0% |
| !! | TTAAAAGTTATTCTCATATT+TGG | + | chr3_2:79120828-79120847 | Msa0428290:intron | 15.0% |
| !! | GATTAATAATATTTACATCT+TGG | - | chr3_2:79120971-79120990 | None:intergenic | 15.0% |
| !!! | TTTTTTATAGAAAACTATTC+TGG | - | chr3_2:79122097-79122116 | None:intergenic | 15.0% |
| !! | ATAATAAGAAGAACTAATCA+TGG | - | chr3_2:79119397-79119416 | None:intergenic | 20.0% |
| !! | CTAATATTGAAATAGTTATC+AGG | - | chr3_2:79119751-79119770 | None:intergenic | 20.0% |
| !! | CTGATAACTATTTCAATATT+AGG | + | chr3_2:79119749-79119768 | Msa0428290:CDS | 20.0% |
| !! | ATCATCTAATGTTGAAATTT+CGG | + | chr3_2:79120367-79120386 | Msa0428290:intron | 20.0% |
| !! | AATTTATAATGAAAGAGATG+TGG | - | chr3_2:79120420-79120439 | None:intergenic | 20.0% |
| !! | AATACAAAAATTTCTGTGAT+CGG | + | chr3_2:79121151-79121170 | Msa0428290:CDS | 20.0% |
| !! | TAGAAAATCAAACTAAAAGA+TGG | - | chr3_2:79121986-79122005 | None:intergenic | 20.0% |
| !!! | GTTTTCTATAAAAAATTCCA+TGG | + | chr3_2:79122102-79122121 | Msa0428290:intron | 20.0% |
| !! | TTCTTTATCTATAGTTTCTT+AGG | + | chr3_2:79122230-79122249 | Msa0428290:intron | 20.0% |
| !!! | TCTAGGTTTTAAATTTATGA+AGG | - | chr3_2:79122710-79122729 | None:intergenic | 20.0% |
| !!! | ATTTAAAACCTAGACAATAA+AGG | + | chr3_2:79122716-79122735 | Msa0428290:intron | 20.0% |
| !! | TTAATATTCCTAGCATATTT+AGG | + | chr3_2:79123091-79123110 | Msa0428290:three_prime_UTR | 20.0% |
| ! | ACATTCTTATTGAGAATTCT+AGG | - | chr3_2:79119271-79119290 | None:intergenic | 25.0% |
| ! | GAAACAAGAAAAAGAAAAGT+GGG | - | chr3_2:79119653-79119672 | None:intergenic | 25.0% |
| ! | AGAAACAAGAAAAAGAAAAG+TGG | - | chr3_2:79119654-79119673 | None:intergenic | 25.0% |
| ! | AAGTAGAATTATTAGAGTGT+TGG | - | chr3_2:79119786-79119805 | None:intergenic | 25.0% |
| !! | CTTGATTGAGCTAATTTTAA+AGG | - | chr3_2:79119988-79120007 | None:intergenic | 25.0% |
| ! | ATAAGATATCTTCCAACTTT+AGG | + | chr3_2:79120311-79120330 | Msa0428290:intron | 25.0% |
| !! | ATTAGATGATTCATTTTCCT+GGG | - | chr3_2:79120357-79120376 | None:intergenic | 25.0% |
| ! | TCATCTAATGTTGAAATTTC+GGG | + | chr3_2:79120368-79120387 | Msa0428290:intron | 25.0% |
| !!! | ATTAGAGGATTTATTTTCCT+GGG | - | chr3_2:79120503-79120522 | None:intergenic | 25.0% |
| !! | ATCCTCTAATGTTGAAATTT+TGG | + | chr3_2:79120513-79120532 | Msa0428290:intron | 25.0% |
| ! | ATCCAAAATTTCAACATTAG+AGG | - | chr3_2:79120518-79120537 | None:intergenic | 25.0% |
| !!! | TATTTGGTTTTACGTATACA+TGG | + | chr3_2:79120844-79120863 | Msa0428290:intron | 25.0% |
| !!! | TCAGTTTGTTATTTGTGTTT+TGG | + | chr3_2:79120903-79120922 | Msa0428290:intron | 25.0% |
| !! | ACTTGTTCTTGTATTTCTAT+AGG | + | chr3_2:79121017-79121036 | Msa0428290:intron | 25.0% |
| !! | CTTGTTCTTGTATTTCTATA+GGG | + | chr3_2:79121018-79121037 | Msa0428290:intron | 25.0% |
| !!! | ACAGTTGTCATTTTTTTGTT+AGG | + | chr3_2:79121277-79121296 | Msa0428290:intron | 25.0% |
| !!! | CAGTTGTCATTTTTTTGTTA+GGG | + | chr3_2:79121278-79121297 | Msa0428290:intron | 25.0% |
| ! | TCGATGTAAATAAAATTCGT+TGG | + | chr3_2:79121322-79121341 | Msa0428290:intron | 25.0% |
| ! | ACCTTCATATACAAAATTCT+GGG | - | chr3_2:79121722-79121741 | None:intergenic | 25.0% |
| !!! | CTTCTATCTTTTAGTTGAAA+TGG | + | chr3_2:79121849-79121868 | Msa0428290:intron | 25.0% |
| ! | AAGAATTGATGAGAGAAAAT+GGG | + | chr3_2:79121937-79121956 | Msa0428290:intron | 25.0% |
| !! | GATTTTCTATCAATCTTGTA+AGG | + | chr3_2:79121997-79122016 | Msa0428290:intron | 25.0% |
| !!! | TTTGAGATGAACTTTTCAAT+AGG | + | chr3_2:79122040-79122059 | Msa0428290:intron | 25.0% |
| !!! | GTTTTAAATTTATGAAGGTG+AGG | - | chr3_2:79122705-79122724 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCTATTCAATTGC+AGG | + | chr3_2:79122753-79122772 | Msa0428290:intron | 25.0% |
| ! | AAATGTATCATTAAAACAGG+AGG | - | chr3_2:79122824-79122843 | None:intergenic | 25.0% |
| ! | CGAAAATGTATCATTAAAAC+AGG | - | chr3_2:79122827-79122846 | None:intergenic | 25.0% |
| !!! | AAAGAAACTAGCTCTTTTAT+TGG | - | chr3_2:79123050-79123069 | None:intergenic | 25.0% |
| !! | TATCTTTTCCTAAATATGCT+AGG | - | chr3_2:79123102-79123121 | None:intergenic | 25.0% |
| !!! | TAATTCTGAGATTTGTCTTA+TGG | + | chr3_2:79123211-79123230 | Msa0428290:three_prime_UTR | 25.0% |
| ! | GTATTACTATGAATGTCAAT+TGG | + | chr3_2:79123239-79123258 | Msa0428290:three_prime_UTR | 25.0% |
| ! | GTTGTATGTTAGTTTCGTAT+TGG | - | chr3_2:79119246-79119265 | None:intergenic | 30.0% |
| TAAGAAGAACTAATCATGGA+TGG | - | chr3_2:79119393-79119412 | None:intergenic | 30.0% | |
| ATTGGAATTGGAATTGGAAT+CGG | - | chr3_2:79119481-79119500 | None:intergenic | 30.0% | |
| TCAATTCAATTCTTCATCCA+TGG | + | chr3_2:79119690-79119709 | Msa0428290:intron | 30.0% | |
| !! | GAATTATTAGAGTGTTGGAA+AGG | - | chr3_2:79119781-79119800 | None:intergenic | 30.0% |
| AAATGTCCTATATTATGAGC+AGG | + | chr3_2:79119904-79119923 | Msa0428290:CDS | 30.0% | |
| ! | AAGTTTTTCTTTATGATGCC+AGG | + | chr3_2:79120005-79120024 | Msa0428290:intron | 30.0% |
| ATATATATAGTCTACCAACC+TGG | - | chr3_2:79120062-79120081 | None:intergenic | 30.0% | |
| ! | ACATCACATTTCAACTCTTT+TGG | - | chr3_2:79120249-79120268 | None:intergenic | 30.0% |
| ATTAGCTAATGACCTAAAGT+TGG | - | chr3_2:79120326-79120345 | None:intergenic | 30.0% | |
| ! | CATTAGATGATTCATTTTCC+TGG | - | chr3_2:79120358-79120377 | None:intergenic | 30.0% |
| !! | CATTAGAGGATTTATTTTCC+TGG | - | chr3_2:79120504-79120523 | None:intergenic | 30.0% |
| !! | ATGTGAAATTTTAACACGAG+AGG | + | chr3_2:79120669-79120688 | Msa0428290:intron | 30.0% |
| CTTAGAATTAAGTCCTAGAA+TGG | - | chr3_2:79120697-79120716 | None:intergenic | 30.0% | |
| TAATGATAAACTCCCTCTAT+GGG | - | chr3_2:79120724-79120743 | None:intergenic | 30.0% | |
| ATAATGATAAACTCCCTCTA+TGG | - | chr3_2:79120725-79120744 | None:intergenic | 30.0% | |
| !! | ATCATTATTTTTCCGTCGAA+TGG | + | chr3_2:79120737-79120756 | Msa0428290:intron | 30.0% |
| TAATATTTACATCTTGGGCA+TGG | - | chr3_2:79120965-79120984 | None:intergenic | 30.0% | |
| ACAAGTATCCCTATAATGTA+GGG | - | chr3_2:79121003-79121022 | None:intergenic | 30.0% | |
| AACAAGTATCCCTATAATGT+AGG | - | chr3_2:79121004-79121023 | None:intergenic | 30.0% | |
| TGTCTAAAAAAGAAGATTCC+TGG | - | chr3_2:79121260-79121279 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTGTTAGGGAGAAG+TGG | + | chr3_2:79121286-79121305 | Msa0428290:intron | 30.0% |
| !!! | TTTTTTTGTTAGGGAGAAGT+GGG | + | chr3_2:79121287-79121306 | Msa0428290:intron | 30.0% |
| ATGTCAAAATAATTGTGTCG+AGG | + | chr3_2:79121345-79121364 | Msa0428290:intron | 30.0% | |
| CGAAGAAAGTAAAGAAAAAC+AGG | + | chr3_2:79121373-79121392 | Msa0428290:intron | 30.0% | |
| AAGTAGGGTATAAAGAAGTA+TGG | + | chr3_2:79121417-79121436 | Msa0428290:intron | 30.0% | |
| AAAAGTGACAATTGATACCA+AGG | - | chr3_2:79121653-79121672 | None:intergenic | 30.0% | |
| !!! | TGGTATCAATTGTCACTTTT+AGG | + | chr3_2:79121653-79121672 | Msa0428290:intron | 30.0% |
| CTTCATATACAAAATTCTGG+GGG | - | chr3_2:79121720-79121739 | None:intergenic | 30.0% | |
| CCTTCATATACAAAATTCTG+GGG | - | chr3_2:79121721-79121740 | None:intergenic | 30.0% | |
| CACCTTCATATACAAAATTC+TGG | - | chr3_2:79121723-79121742 | None:intergenic | 30.0% | |
| TGTATATGAAGGTGATGATA+TGG | + | chr3_2:79121729-79121748 | Msa0428290:intron | 30.0% | |
| GAAGAATTGATGAGAGAAAA+TGG | + | chr3_2:79121936-79121955 | Msa0428290:intron | 30.0% | |
| AGAATTGATGAGAGAAAATG+GGG | + | chr3_2:79121938-79121957 | Msa0428290:intron | 30.0% | |
| GAAAAGTTCATCTCAAACTA+TGG | - | chr3_2:79122037-79122056 | None:intergenic | 30.0% | |
| AGTTTACGTCTTTAATGACT+TGG | + | chr3_2:79122153-79122172 | Msa0428290:intron | 30.0% | |
| !! | TTCAAGTATTGGATAAGTCA+AGG | - | chr3_2:79122286-79122305 | None:intergenic | 30.0% |
| ACTTATCCAATACTTGAACA+AGG | + | chr3_2:79122288-79122307 | Msa0428290:intron | 30.0% | |
| GTATTACCTTGTTCAAGTAT+TGG | - | chr3_2:79122297-79122316 | None:intergenic | 30.0% | |
| TCAACTACTAAAAGGAATAG+AGG | - | chr3_2:79122319-79122338 | None:intergenic | 30.0% | |
| AAGGAAGATCAACTACTAAA+AGG | - | chr3_2:79122327-79122346 | None:intergenic | 30.0% | |
| CTGAAAATTACCCATGAATT+AGG | - | chr3_2:79122464-79122483 | None:intergenic | 30.0% | |
| CAAAAATGAGGGTAATAAGA+CGG | - | chr3_2:79122496-79122515 | None:intergenic | 30.0% | |
| TGATACAGGTACAAAAATGA+GGG | - | chr3_2:79122507-79122526 | None:intergenic | 30.0% | |
| !!! | TTCTGTTTTTAGAAGAAGTG+CGG | - | chr3_2:79122542-79122561 | None:intergenic | 30.0% |
| ! | CACTTCTTCTAAAAACAGAA+TGG | + | chr3_2:79122542-79122561 | Msa0428290:intron | 30.0% |
| TAAGTTCACCTTTATTGTCT+AGG | - | chr3_2:79122727-79122746 | None:intergenic | 30.0% | |
| !! | TTTGCAAGAATGAAAGTGTT+TGG | + | chr3_2:79122903-79122922 | Msa0428290:exon | 30.0% |
| TTATATTGACAGATAGCAAG+TGG | - | chr3_2:79122952-79122971 | None:intergenic | 30.0% | |
| CTAGGAATATTAATCAAACC+CGG | - | chr3_2:79123084-79123103 | None:intergenic | 30.0% | |
| CTATCAATACTAAGCTTCTT+AGG | - | chr3_2:79123146-79123165 | None:intergenic | 30.0% | |
| !! | AAGAAGCTTAGTATTGATAG+AGG | + | chr3_2:79123146-79123165 | Msa0428290:three_prime_UTR | 30.0% |
| TGATTGTTGAGTGATTTCAG+TGG | - | chr3_2:79119362-79119381 | None:intergenic | 35.0% | |
| AGAACTAATCATGGATGGAA+TGG | - | chr3_2:79119388-79119407 | None:intergenic | 35.0% | |
| CATCATCATCATCATGTGTA+CGG | + | chr3_2:79119446-79119465 | Msa0428290:exon | 35.0% | |
| ATTGGAATTGGAATCGGATT+CGG | - | chr3_2:79119475-79119494 | None:intergenic | 35.0% | |
| GATTCCAATTCCAATTCCAA+TGG | + | chr3_2:79119480-79119499 | Msa0428290:CDS | 35.0% | |
| ATTGAGTGACTAAACGAGTA+TGG | - | chr3_2:79119602-79119621 | None:intergenic | 35.0% | |
| AAAAGAAAAGTGGGAGGAAA+AGG | - | chr3_2:79119644-79119663 | None:intergenic | 35.0% | |
| ACAAGAAAAAGAAAAGTGGG+AGG | - | chr3_2:79119650-79119669 | None:intergenic | 35.0% | |
| CTCTGCAAAAAGATGAACAA+TGG | - | chr3_2:79120204-79120223 | None:intergenic | 35.0% | |
| ! | CATTGTTCATCTTTTTGCAG+AGG | + | chr3_2:79120202-79120221 | Msa0428290:intron | 35.0% |
| ! | CATTTCAACTCTTTTGGACA+AGG | - | chr3_2:79120243-79120262 | None:intergenic | 35.0% |
| AGAGTTGAAATGTGATGTTG+AGG | + | chr3_2:79120251-79120270 | Msa0428290:CDS | 35.0% | |
| GTGATGTTGAGGTATGTATT+CGG | + | chr3_2:79120262-79120281 | Msa0428290:intron | 35.0% | |
| AGTGAGAGACAACTTGTAAA+CGG | + | chr3_2:79120634-79120653 | Msa0428290:intron | 35.0% | |
| AACTTGTAAACGGGATAACA+AGG | + | chr3_2:79120644-79120663 | Msa0428290:intron | 35.0% | |
| !! | AATTCTAAGATCTCCCATAG+AGG | + | chr3_2:79120708-79120727 | Msa0428290:intron | 35.0% |
| !! | ATTCTAAGATCTCCCATAGA+GGG | + | chr3_2:79120709-79120728 | Msa0428290:intron | 35.0% |
| !!! | GTTTTTTCAATGCCATTCGA+CGG | - | chr3_2:79120752-79120771 | None:intergenic | 35.0% |
| AAAAATCCTCTTCACAACGA+AGG | - | chr3_2:79120788-79120807 | None:intergenic | 35.0% | |
| TAACCATTGCCCTACATTAT+AGG | + | chr3_2:79120991-79121010 | Msa0428290:intron | 35.0% | |
| AACCATTGCCCTACATTATA+GGG | + | chr3_2:79120992-79121011 | Msa0428290:intron | 35.0% | |
| TGTACTTAACTGTCAGCAAA+AGG | - | chr3_2:79121109-79121128 | None:intergenic | 35.0% | |
| AATAGCTGTAGATGGATCAA+TGG | + | chr3_2:79121501-79121520 | Msa0428290:intron | 35.0% | |
| ATCAATGGATACCCAAGAAA+TGG | + | chr3_2:79121516-79121535 | Msa0428290:intron | 35.0% | |
| ! | TATACAAAATTCTGGGGGAA+AGG | - | chr3_2:79121715-79121734 | None:intergenic | 35.0% |
| ! | CCCCAGAATTTTGTATATGA+AGG | + | chr3_2:79121718-79121737 | Msa0428290:intron | 35.0% |
| GTTCTACATCCTACTTTAGT+GGG | - | chr3_2:79121766-79121785 | None:intergenic | 35.0% | |
| ! | AATGGATTCTTTCCTTCAAC+TGG | + | chr3_2:79121867-79121886 | Msa0428290:intron | 35.0% |
| GTTCATCTCAAACTATGGAA+TGG | - | chr3_2:79122032-79122051 | None:intergenic | 35.0% | |
| AAACTATTCTGGTACATTGC+AGG | - | chr3_2:79122086-79122105 | None:intergenic | 35.0% | |
| GCTCAAAATATAGAAGACCA+TGG | - | chr3_2:79122122-79122141 | None:intergenic | 35.0% | |
| GCAAATCACAGTATATGTCA+AGG | - | chr3_2:79122346-79122365 | None:intergenic | 35.0% | |
| ! | TGACATATACTGTGATTTGC+AGG | + | chr3_2:79122346-79122365 | Msa0428290:intron | 35.0% |
| ! | TACTGTGATTTGCAGGATAT+TGG | + | chr3_2:79122353-79122372 | Msa0428290:intron | 35.0% |
| CTGATACAGGTACAAAAATG+AGG | - | chr3_2:79122508-79122527 | None:intergenic | 35.0% | |
| GGATATTAAGACACTGATAC+AGG | - | chr3_2:79122521-79122540 | None:intergenic | 35.0% | |
| TTCCTATTCAATTGCAGGTT+TGG | + | chr3_2:79122758-79122777 | Msa0428290:intron | 35.0% | |
| TCCTATTCAATTGCAGGTTT+GGG | + | chr3_2:79122759-79122778 | Msa0428290:intron | 35.0% | |
| GTATCATTAAAACAGGAGGT+CGG | - | chr3_2:79122820-79122839 | None:intergenic | 35.0% | |
| AGTGGCTGAATTACACATTA+TGG | - | chr3_2:79122934-79122953 | None:intergenic | 35.0% | |
| !! | ACTAGCTCTTTTATTGGCTA+TGG | - | chr3_2:79123044-79123063 | None:intergenic | 35.0% |
| !!! | GTTTCTTTGTTTTTCTCGAC+CGG | + | chr3_2:79123062-79123081 | Msa0428290:three_prime_UTR | 35.0% |
| !!! | TTTCTTTGTTTTTCTCGACC+GGG | + | chr3_2:79123063-79123082 | Msa0428290:three_prime_UTR | 35.0% |
| GAATTACATCGCAATTGTGA+AGG | - | chr3_2:79123197-79123216 | None:intergenic | 35.0% | |
| TTCATTCATCCAGTCTAGAG+TGG | - | chr3_2:79119204-79119223 | None:intergenic | 40.0% | |
| ! | GTTAGTTTCGTATTGGTCTG+TGG | - | chr3_2:79119239-79119258 | None:intergenic | 40.0% |
| ACCACAAGAAGTTGAAAGTG+CGG | - | chr3_2:79119307-79119326 | None:intergenic | 40.0% | |
| TGTTGAGTGATTTCAGTGGA+TGG | - | chr3_2:79119358-79119377 | None:intergenic | 40.0% | |
| CCATCCATTGGAATTGGAAT+TGG | - | chr3_2:79119487-79119506 | None:intergenic | 40.0% | |
| CCAATTCCAATTCCAATGGA+TGG | + | chr3_2:79119484-79119503 | Msa0428290:CDS | 40.0% | |
| ACGATTCCATCCATTGGAAT+TGG | - | chr3_2:79119493-79119512 | None:intergenic | 40.0% | |
| TTAGTCACTCAATCACTCAC+CGG | + | chr3_2:79119609-79119628 | Msa0428290:CDS | 40.0% | |
| CTTGGAATACTGCATATCCA+TGG | - | chr3_2:79119710-79119729 | None:intergenic | 40.0% | |
| CATGGATATGCAGTATTCCA+AGG | + | chr3_2:79119708-79119727 | Msa0428290:intron | 40.0% | |
| TGCTGACCTGCTCATAATAT+AGG | - | chr3_2:79119913-79119932 | None:intergenic | 40.0% | |
| ! | CTTTATGATGCCAGGCTTTT+TGG | + | chr3_2:79120013-79120032 | Msa0428290:intron | 40.0% |
| ! | TGATTCATTTTCCTGGGCAA+GGG | - | chr3_2:79120351-79120370 | None:intergenic | 40.0% |
| ! | ATGATTCATTTTCCTGGGCA+AGG | - | chr3_2:79120352-79120371 | None:intergenic | 40.0% |
| ACCTGAAAAACCTCTGCTTT+AGG | + | chr3_2:79120457-79120476 | Msa0428290:intron | 40.0% | |
| ! | ACCTAAAGCAGAGGTTTTTC+AGG | - | chr3_2:79120461-79120480 | None:intergenic | 40.0% |
| AAGCTAATGACCTAAAGCAG+AGG | - | chr3_2:79120470-79120489 | None:intergenic | 40.0% | |
| !! | GGATTTATTTTCCTGGGCAA+GGG | - | chr3_2:79120497-79120516 | None:intergenic | 40.0% |
| !! | AGGATTTATTTTCCTGGGCA+AGG | - | chr3_2:79120498-79120517 | None:intergenic | 40.0% |
| GCACAAATTGTTTGCATGAC+AGG | - | chr3_2:79120544-79120563 | None:intergenic | 40.0% | |
| CTTCCTAGACAGAAATTGAG+TGG | - | chr3_2:79120610-79120629 | None:intergenic | 40.0% | |
| GTGAGAGACAACTTGTAAAC+GGG | + | chr3_2:79120635-79120654 | Msa0428290:intron | 40.0% | |
| ATCCCTATAATGTAGGGCAA+TGG | - | chr3_2:79120997-79121016 | None:intergenic | 40.0% | |
| ACTGTCAGCAAAAGGAAGTT+AGG | - | chr3_2:79121101-79121120 | None:intergenic | 40.0% | |
| TACATATGCCATCAGAGACA+TGG | + | chr3_2:79121125-79121144 | Msa0428290:CDS | 40.0% | |
| AAATTTCTGTGATCGGCCAA+AGG | + | chr3_2:79121158-79121177 | Msa0428290:CDS | 40.0% | |
| ! | CAATGACTTCTTCTGGTTGT+GGG | - | chr3_2:79121191-79121210 | None:intergenic | 40.0% |
| CACAACCAGAAGAAGTCATT+GGG | + | chr3_2:79121190-79121209 | Msa0428290:CDS | 40.0% | |
| ACAACCAGAAGAAGTCATTG+GGG | + | chr3_2:79121191-79121210 | Msa0428290:CDS | 40.0% | |
| AGACTCACACAAATGAAGCA+AGG | + | chr3_2:79121450-79121469 | Msa0428290:intron | 40.0% | |
| CAGTCTTCAATAGCTGTAGA+TGG | + | chr3_2:79121493-79121512 | Msa0428290:intron | 40.0% | |
| TGCAGATCTAGCCATTTCTT+GGG | - | chr3_2:79121530-79121549 | None:intergenic | 40.0% | |
| TTGCAGATCTAGCCATTTCT+TGG | - | chr3_2:79121531-79121550 | None:intergenic | 40.0% | |
| ! | TATACGACAAAGTGCTACAG+AGG | + | chr3_2:79121613-79121632 | Msa0428290:intron | 40.0% |
| CAATTGATACCAAGGTGCAT+TGG | - | chr3_2:79121645-79121664 | None:intergenic | 40.0% | |
| ATTCCATGACCCACTAAAGT+AGG | + | chr3_2:79121754-79121773 | Msa0428290:intron | 40.0% | |
| GGTTCTACATCCTACTTTAG+TGG | - | chr3_2:79121767-79121786 | None:intergenic | 40.0% | |
| AACCCTAGAATTCTATCGAC+CGG | + | chr3_2:79121783-79121802 | Msa0428290:intron | 40.0% | |
| AACCGGTCGATAGAATTCTA+GGG | - | chr3_2:79121788-79121807 | None:intergenic | 40.0% | |
| AAACCGGTCGATAGAATTCT+AGG | - | chr3_2:79121789-79121808 | None:intergenic | 40.0% | |
| ! | AGAATTCTATCGACCGGTTT+AGG | + | chr3_2:79121789-79121808 | Msa0428290:intron | 40.0% |
| CATATCTCTCATCCAGTTGA+AGG | - | chr3_2:79121882-79121901 | None:intergenic | 40.0% | |
| CTTCAACTGGATGAGAGATA+TGG | + | chr3_2:79121880-79121899 | Msa0428290:intron | 40.0% | |
| ATTGATGAGAGAAAATGGGG+AGG | + | chr3_2:79121941-79121960 | Msa0428290:intron | 40.0% | |
| TTGATGAGAGAAAATGGGGA+GGG | + | chr3_2:79121942-79121961 | Msa0428290:intron | 40.0% | |
| TCAAACTATGGAATGGAGCA+AGG | - | chr3_2:79122025-79122044 | None:intergenic | 40.0% | |
| ! | AGTCAAGGTATTCAGACACA+CGG | - | chr3_2:79122271-79122290 | None:intergenic | 40.0% |
| GGAAAACGCTGCTTATATGA+AGG | + | chr3_2:79122416-79122435 | Msa0428290:CDS | 40.0% | |
| CATGAATTAGGAAATCCTCC+GGG | - | chr3_2:79122452-79122471 | None:intergenic | 40.0% | |
| CCATGAATTAGGAAATCCTC+CGG | - | chr3_2:79122453-79122472 | None:intergenic | 40.0% | |
| CGGAGGATTTCCTAATTCAT+GGG | + | chr3_2:79122451-79122470 | Msa0428290:CDS | 40.0% | |
| AAATGAGGGTAATAAGACGG+TGG | - | chr3_2:79122493-79122512 | None:intergenic | 40.0% | |
| CTACTGTACTTCAGAACTTG+CGG | + | chr3_2:79122571-79122590 | Msa0428290:CDS | 40.0% | |
| AGAACAATGAGATACACACC+TGG | + | chr3_2:79122600-79122619 | Msa0428290:CDS | 40.0% | |
| GAACAATGAGATACACACCT+GGG | + | chr3_2:79122601-79122620 | Msa0428290:CDS | 40.0% | |
| CCTATTCAATTGCAGGTTTG+GGG | + | chr3_2:79122760-79122779 | Msa0428290:intron | 40.0% | |
| TCTATTCTTCTATCCATGGG+TGG | - | chr3_2:79122871-79122890 | None:intergenic | 40.0% | |
| ACCCATGGATAGAAGAATAG+AGG | + | chr3_2:79122870-79122889 | Msa0428290:CDS | 40.0% | |
| CCCTCTATTCTTCTATCCAT+GGG | - | chr3_2:79122874-79122893 | None:intergenic | 40.0% | |
| CCCATGGATAGAAGAATAGA+GGG | + | chr3_2:79122871-79122890 | Msa0428290:CDS | 40.0% | |
| ACCCTCTATTCTTCTATCCA+TGG | - | chr3_2:79122875-79122894 | None:intergenic | 40.0% | |
| TTGAGCACGATTCCATCCAT+TGG | - | chr3_2:79119499-79119518 | None:intergenic | 45.0% | |
| AATGGATGGAATCGTGCTCA+AGG | + | chr3_2:79119498-79119517 | Msa0428290:CDS | 45.0% | |
| !! | TGCTCAAGGATTAGCTCTCA+AGG | + | chr3_2:79119512-79119531 | Msa0428290:CDS | 45.0% |
| ! | TATCAGGGTCTCTAGAAGCT+TGG | - | chr3_2:79119735-79119754 | None:intergenic | 45.0% |
| ! | TATGATGCCAGGCTTTTTGG+AGG | + | chr3_2:79120016-79120035 | Msa0428290:intron | 45.0% |
| TTAGCTAATAACCCTTGCCC+AGG | + | chr3_2:79120337-79120356 | Msa0428290:intron | 45.0% | |
| CCTAGACAGAAATTGAGTGG+AGG | - | chr3_2:79120607-79120626 | None:intergenic | 45.0% | |
| CCTCCACTCAATTTCTGTCT+AGG | + | chr3_2:79120604-79120623 | Msa0428290:intron | 45.0% | |
| AACACGAGAGGATCCATTCT+AGG | + | chr3_2:79120681-79120700 | Msa0428290:intron | 45.0% | |
| TTACGTATACATGGCGATGC+AGG | + | chr3_2:79120853-79120872 | Msa0428290:intron | 45.0% | |
| TACATGGCGATGCAGGAATT+AGG | + | chr3_2:79120860-79120879 | Msa0428290:intron | 45.0% | |
| ACATGGCGATGCAGGAATTA+GGG | + | chr3_2:79120861-79120880 | Msa0428290:intron | 45.0% | |
| ATATGCCATCAGAGACATGG+AGG | + | chr3_2:79121128-79121147 | Msa0428290:CDS | 45.0% | |
| GTATTCCTCCATGTCTCTGA+TGG | - | chr3_2:79121136-79121155 | None:intergenic | 45.0% | |
| ! | CCAATGACTTCTTCTGGTTG+TGG | - | chr3_2:79121192-79121211 | None:intergenic | 45.0% |
| CCACAACCAGAAGAAGTCAT+TGG | + | chr3_2:79121189-79121208 | Msa0428290:CDS | 45.0% | |
| CTTACCCCAATGACTTCTTC+TGG | - | chr3_2:79121198-79121217 | None:intergenic | 45.0% | |
| ATTCCTGGAGCTAAGATCAC+AGG | - | chr3_2:79121245-79121264 | None:intergenic | 45.0% | |
| ! | CTGCTGCTGAAGCAATGTTT+TGG | + | chr3_2:79121574-79121593 | Msa0428290:intron | 45.0% |
| ATACCAAGGTGCATTGGACT+CGG | - | chr3_2:79121639-79121658 | None:intergenic | 45.0% | |
| ! | TTCTGGGGGAAAGGAAAAAC+TGG | - | chr3_2:79121706-79121725 | None:intergenic | 45.0% |
| ! | CATCCTACTTTAGTGGGTCA+TGG | - | chr3_2:79121760-79121779 | None:intergenic | 45.0% |
| ! | ATTCTATCGACCGGTTTAGG+TGG | + | chr3_2:79121792-79121811 | Msa0428290:intron | 45.0% |
| ATCACCCAAACCACCTAAAC+CGG | - | chr3_2:79121805-79121824 | None:intergenic | 45.0% | |
| AATTAGGAAATCCTCCGGGT+GGG | - | chr3_2:79122448-79122467 | None:intergenic | 45.0% | |
| CCGGAGGATTTCCTAATTCA+TGG | + | chr3_2:79122450-79122469 | Msa0428290:CDS | 45.0% | |
| !! | CGCAAGTTCTGAAGTACAGT+AGG | - | chr3_2:79122573-79122592 | None:intergenic | 45.0% |
| ATGAGATACACACCTGGGAT+CGG | + | chr3_2:79122606-79122625 | Msa0428290:CDS | 45.0% | |
| ! | GATCGGGGTTATGATGATGA+TGG | + | chr3_2:79122623-79122642 | Msa0428290:CDS | 45.0% |
| CCCCAAACCTGCAATTGAAT+AGG | - | chr3_2:79122763-79122782 | None:intergenic | 45.0% | |
| CAGGTTTGGGGACAAAAAGA+AGG | + | chr3_2:79122772-79122791 | Msa0428290:intron | 45.0% | |
| ATTCTTCTATCCATGGGTGG+TGG | - | chr3_2:79122868-79122887 | None:intergenic | 45.0% | |
| !!! | TTTTATTTTTTTTTAATTTC+TGG | + | chr3_2:79122197-79122216 | Msa0428290:intron | 5.0% |
| AGAGATGAGGGAGAATCCAG+CGG | - | chr3_2:79119172-79119191 | None:intergenic | 50.0% | |
| TGGAGTAGAGCCAGAGATGA+GGG | - | chr3_2:79119184-79119203 | None:intergenic | 50.0% | |
| GCCGCACTTTCAACTTCTTG+TGG | + | chr3_2:79119303-79119322 | Msa0428290:five_prime_UTR | 50.0% | |
| TGGAAGCAGCCAAATAGCGA+GGG | - | chr3_2:79119338-79119357 | None:intergenic | 50.0% | |
| ATGGAAGCAGCCAAATAGCG+AGG | - | chr3_2:79119339-79119358 | None:intergenic | 50.0% | |
| CTCAAGGCTCTCTTACTCCT+CGG | + | chr3_2:79119528-79119547 | Msa0428290:CDS | 50.0% | |
| TTCGTAAGTCTACCACTCGC+TGG | + | chr3_2:79119574-79119593 | Msa0428290:CDS | 50.0% | |
| TCGTAAGTCTACCACTCGCT+GGG | + | chr3_2:79119575-79119594 | Msa0428290:CDS | 50.0% | |
| TCAATCACTCACCGGCGAAA+AGG | + | chr3_2:79119617-79119636 | Msa0428290:CDS | 50.0% | |
| ! | GAGGAAAAGGACCTTTTCGC+CGG | - | chr3_2:79119631-79119650 | None:intergenic | 50.0% |
| ! | GTCTCTAGAAGCTTGGTCCT+TGG | - | chr3_2:79119728-79119747 | None:intergenic | 50.0% |
| AGTCTACCAACCTGGCGAAA+GGG | - | chr3_2:79120054-79120073 | None:intergenic | 50.0% | |
| TAGTCTACCAACCTGGCGAA+AGG | - | chr3_2:79120055-79120074 | None:intergenic | 50.0% | |
| TTAGCTTACAACCCTTGCCC+AGG | + | chr3_2:79120483-79120502 | Msa0428290:intron | 50.0% | |
| GCTATGCCTTCGTTGTGAAG+AGG | + | chr3_2:79120779-79120798 | Msa0428290:intron | 50.0% | |
| CATGGCGATGCAGGAATTAG+GGG | + | chr3_2:79120862-79120881 | Msa0428290:intron | 50.0% | |
| ATGGCGATGCAGGAATTAGG+GGG | + | chr3_2:79120863-79120882 | Msa0428290:intron | 50.0% | |
| CATCCTGTGATCTTAGCTCC+AGG | + | chr3_2:79121239-79121258 | Msa0428290:intron | 50.0% | |
| ! | ATCGACCGGTTTAGGTGGTT+TGG | + | chr3_2:79121797-79121816 | Msa0428290:intron | 50.0% |
| ! | TCGACCGGTTTAGGTGGTTT+GGG | + | chr3_2:79121798-79121817 | Msa0428290:intron | 50.0% |
| AGAGAAAATGGGGAGGGAGA+TGG | + | chr3_2:79121948-79121967 | Msa0428290:intron | 50.0% | |
| ! | CATCTCAAGCGTTGTTCACG+TGG | + | chr3_2:79122395-79122414 | Msa0428290:CDS | 50.0% |
| TATGAAGGTTCAACCCCACC+CGG | + | chr3_2:79122431-79122450 | Msa0428290:CDS | 50.0% | |
| ATTAGGAAATCCTCCGGGTG+GGG | - | chr3_2:79122447-79122466 | None:intergenic | 50.0% | |
| GAATTAGGAAATCCTCCGGG+TGG | - | chr3_2:79122449-79122468 | None:intergenic | 50.0% | |
| TGAGATACACACCTGGGATC+GGG | + | chr3_2:79122607-79122626 | Msa0428290:CDS | 50.0% | |
| ATCATCATAACCCCGATCCC+AGG | - | chr3_2:79122621-79122640 | None:intergenic | 50.0% | |
| TTAAAACAGGAGGTCGGTGC+AGG | - | chr3_2:79122814-79122833 | None:intergenic | 50.0% | |
| !! | TTCTATCCATGGGTGGTGGA+GGG | - | chr3_2:79122864-79122883 | None:intergenic | 50.0% |
| GCTGGATTCTCCCTCATCTC+TGG | + | chr3_2:79119171-79119190 | Msa0428290:five_prime_UTR | 55.0% | |
| GTGGAGTAGAGCCAGAGATG+AGG | - | chr3_2:79119185-79119204 | None:intergenic | 55.0% | |
| GGCTCTACTCCACTCTAGAC+TGG | + | chr3_2:79119192-79119211 | Msa0428290:five_prime_UTR | 55.0% | |
| TTGTAGCCGCCCTCGCTATT+TGG | + | chr3_2:79119326-79119345 | Msa0428290:five_prime_UTR | 55.0% | |
| AAGCAGCCAAATAGCGAGGG+CGG | - | chr3_2:79119335-79119354 | None:intergenic | 55.0% | |
| AAGGCTCTCTTACTCCTCGG+TGG | + | chr3_2:79119531-79119550 | Msa0428290:CDS | 55.0% | |
| CCATCAACTAGCTCAGCAGC+TGG | - | chr3_2:79119881-79119900 | None:intergenic | 55.0% | |
| CCAGCTGCTGAGCTAGTTGA+TGG | + | chr3_2:79119878-79119897 | Msa0428290:CDS | 55.0% | |
| GTGGACTCCTCCAAAAAGCC+TGG | - | chr3_2:79120026-79120045 | None:intergenic | 55.0% | |
| TCCACAGAAACCCTTTCGCC+AGG | + | chr3_2:79120041-79120060 | Msa0428290:CDS | 55.0% | |
| ACCTGGCGAAAGGGTTTCTG+TGG | - | chr3_2:79120045-79120064 | None:intergenic | 55.0% | |
| CAGAAACCCTTTCGCCAGGT+TGG | + | chr3_2:79120045-79120064 | Msa0428290:intron | 55.0% | |
| ! | GGTGGTTTGGGTGATGCAGT+TGG | + | chr3_2:79121810-79121829 | Msa0428290:intron | 55.0% |
| AAATGGGGAGGGAGATGGAG+AGG | + | chr3_2:79121953-79121972 | Msa0428290:intron | 55.0% | |
| GAGATACACACCTGGGATCG+GGG | + | chr3_2:79122608-79122627 | Msa0428290:CDS | 55.0% | |
| GGTGCAGGCTTGAACTCGTA+AGG | - | chr3_2:79122799-79122818 | None:intergenic | 55.0% | |
| GGTGGAGGGGGGAAATTCAA+GGG | - | chr3_2:79122850-79122869 | None:intergenic | 55.0% | |
| TGGTGGAGGGGGGAAATTCA+AGG | - | chr3_2:79122851-79122870 | None:intergenic | 55.0% | |
| !! | TCTATCCATGGGTGGTGGAG+GGG | - | chr3_2:79122863-79122882 | None:intergenic | 55.0% |
| ! | CTTCTATCCATGGGTGGTGG+AGG | - | chr3_2:79122865-79122884 | None:intergenic | 55.0% |
| ACGAGTATGGTCCCAGCGAG+TGG | - | chr3_2:79119589-79119608 | None:intergenic | 60.0% | |
| !! | GGTTGTGGGCGCTGATCCTT+TGG | - | chr3_2:79121177-79121196 | None:intergenic | 60.0% |
| AGGCCGAGTCCAATGCACCT+TGG | + | chr3_2:79121633-79121652 | Msa0428290:intron | 60.0% | |
| !! | TATCCATGGGTGGTGGAGGG+GGG | - | chr3_2:79122861-79122880 | None:intergenic | 60.0% |
| !! | CTATCCATGGGTGGTGGAGG+GGG | - | chr3_2:79122862-79122881 | None:intergenic | 60.0% |
| !! | TGACGAGAAGAGCGCCACCG+AGG | - | chr3_2:79119548-79119567 | None:intergenic | 65.0% |
| GGGGAGGGAGATGGAGAGGA+TGG | + | chr3_2:79121957-79121976 | Msa0428290:intron | 65.0% | |
| GAAGGTTCAACCCCACCCGG+AGG | + | chr3_2:79122434-79122453 | Msa0428290:CDS | 65.0% | |
| TTTCCCCCCTCCACCACCCA+TGG | + | chr3_2:79122855-79122874 | Msa0428290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79119158 | 79123284 | 79119158 | ID=Msa0428290;Name=Msa0428290 |
| chr3_2 | mRNA | 79119158 | 79123284 | 79119158 | ID=Msa0428290-mRNA-1;Parent=Msa0428290;Name=Msa0428290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=301|1|1|1|1|1|9|369|269 |
| chr3_2 | exon | 79119158 | 79119638 | 79119158 | ID=Msa0428290-mRNA-1:exon:21229;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79119721 | 79119770 | 79119721 | ID=Msa0428290-mRNA-1:exon:21230;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79119865 | 79119925 | 79119865 | ID=Msa0428290-mRNA-1:exon:21231;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79120027 | 79120062 | 79120027 | ID=Msa0428290-mRNA-1:exon:21232;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79120222 | 79120272 | 79120222 | ID=Msa0428290-mRNA-1:exon:21233;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79121120 | 79121212 | 79121120 | ID=Msa0428290-mRNA-1:exon:21234;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79122368 | 79122472 | 79122368 | ID=Msa0428290-mRNA-1:exon:21235;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79122560 | 79122652 | 79122560 | ID=Msa0428290-mRNA-1:exon:21236;Parent=Msa0428290-mRNA-1 |
| chr3_2 | exon | 79122775 | 79123284 | 79122775 | ID=Msa0428290-mRNA-1:exon:21237;Parent=Msa0428290-mRNA-1 |
| chr3_2 | five_prime_UTR | 79119158 | 79119458 | 79119158 | ID=Msa0428290-mRNA-1:five_prime_utr;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79119459 | 79119638 | 79119459 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79119721 | 79119770 | 79119721 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79119865 | 79119925 | 79119865 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79120027 | 79120062 | 79120027 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79120222 | 79120272 | 79120222 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79121120 | 79121212 | 79121120 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79122368 | 79122472 | 79122368 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79122560 | 79122652 | 79122560 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | CDS | 79122775 | 79122915 | 79122775 | ID=Msa0428290-mRNA-1:cds;Parent=Msa0428290-mRNA-1 |
| chr3_2 | three_prime_UTR | 79122916 | 79123284 | 79122916 | ID=Msa0428290-mRNA-1:three_prime_utr;Parent=Msa0428290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
