AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340830 MtrunA17_Chr2g0332621 94.585 277 15 0 1 277 1 277 0.0 536
Msa0340830 MtrunA17_Chr5g0437771 33.871 248 157 5 30 273 35 279 3.83e-37 132
Msa0340830 MtrunA17_Chr3g0114231 34.615 208 120 4 78 273 71 274 8.90e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340830 AT3G15690.2 49.097 277 126 5 1 276 1 263 1.33e-81 246
Msa0340830 AT1G52670.1 46.154 273 143 4 6 276 4 274 3.26e-73 226
Msa0340830 AT3G15690.1 45.669 254 123 5 1 253 1 240 5.97e-65 204
Msa0340830 AT3G15690.3 45.161 248 123 4 7 253 7 242 2.86e-63 199
Msa0340830 AT3G56130.1 34.956 226 126 4 63 272 58 278 5.52e-35 127
Msa0340830 AT3G56130.2 36.458 192 102 3 96 272 16 202 2.50e-33 121
Msa0340830 AT3G56130.3 55.319 94 42 0 179 272 98 191 2.48e-30 113
Msa0340830 AT3G56130.4 31.884 207 120 4 63 253 58 259 1.07e-24 100
Msa0340830 AT3G56130.5 29.319 191 114 4 63 237 58 243 7.02e-17 78.6

Find 88 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTAACATCATTAAAAT+TGG 0.116441 2_4:-62243569 None:intergenic
CTCTTTGCAGGTGGAATTCT+TGG 0.142729 2_4:+62243742 Msa0340830:intron
TTTATCCTTATCTTCCCTTT+TGG 0.207575 2_4:-62244997 None:intergenic
GTTGAGCTTTCACAACATTT+TGG 0.245452 2_4:+62240612 Msa0340830:CDS
GCGGGTGTATTTATACTTAC+AGG 0.253090 2_4:-62244021 None:intergenic
ATATTGAAGCTTCTTTATTC+CGG 0.272327 2_4:-62244831 None:intergenic
GAAACTGATCCATTTGGTTT+AGG 0.301102 2_4:-62244051 None:intergenic
TCTGAAGAGATTAAATCTTC+TGG 0.320860 2_4:+62243526 Msa0340830:CDS
TATTGAAGCTTCTTTATTCC+GGG 0.339110 2_4:-62244830 None:intergenic
TTGAGAACAAGTTATATATA+TGG 0.339886 2_4:+62244914 Msa0340830:three_prime_UTR
CAGAAGATCTCGGACGATAA+AGG 0.350185 2_4:+62244258 Msa0340830:CDS
TCTGCTGATTGGTCATTAGA+TGG 0.359586 2_4:-62240714 None:intergenic
GCAATATTGCCGTCATTTCC+CGG 0.364958 2_4:+62244812 Msa0340830:CDS
GATGATAAACAGCTGTTTCA+AGG 0.373445 2_4:+62243491 Msa0340830:intron
AATGATATATATCAGCTTGA+TGG 0.374079 2_4:+62243931 Msa0340830:intron
GTTGGGGACTTGGATTGCTT+TGG 0.378715 2_4:-62239395 None:intergenic
GTGACAGATCCAGTTGGTTA+TGG 0.384983 2_4:+62244776 Msa0340830:intron
CAACTGGTAAGTTGGGGACT+TGG 0.388451 2_4:-62239405 None:intergenic
TCTTTCTAGTCTGACGTGTC+CGG 0.391008 2_4:+62244636 Msa0340830:intron
CTTTCTAGTCTGACGTGTCC+GGG 0.391958 2_4:+62244637 Msa0340830:intron
GTGAGATGAAGCCATTGAAT+TGG 0.400250 2_4:-62239536 None:intergenic
AGAAGATCTCGGACGATAAA+GGG 0.403087 2_4:+62244259 Msa0340830:CDS
AATGTAGAAACTGATCCATT+TGG 0.403959 2_4:-62244057 None:intergenic
AAACGTATCACAGGTAGCTT+AGG 0.415749 2_4:+62240543 Msa0340830:intron
TAATCCCTCTTCCAATTCAA+TGG 0.416402 2_4:+62239525 Msa0340830:exon
TACATTGGATCTCTGCTGAT+TGG 0.416759 2_4:-62240725 None:intergenic
CTGCTGATTGGTCATTAGAT+GGG 0.417953 2_4:-62240713 None:intergenic
TTTAATACACAAACCTCAAC+TGG 0.428231 2_4:-62244514 None:intergenic
TTATGTGAGACGGCATCAAT+TGG 0.434687 2_4:+62243773 Msa0340830:CDS
TTAAGAGTGTTGAATACTGC+AGG 0.442291 2_4:-62244957 None:intergenic
GCACTAACATCATTAAAATT+GGG 0.455388 2_4:-62243568 None:intergenic
AAAGAGAGAATGAAGGTTGA+CGG 0.471060 2_4:-62239436 None:intergenic
AAGTTCTAATCACATGCTAA+TGG 0.474616 2_4:-62239358 None:intergenic
CTTACAGGAGCAGGAATTGA+AGG 0.477237 2_4:-62244006 None:intergenic
GTACTAGAAGTTGGATCAGT+AGG 0.483887 2_4:+62240634 Msa0340830:CDS
TCAACGAGAAAGAATGAGAA+TGG 0.488105 2_4:-62245031 None:intergenic
TTCTTTATTCCGGGAAATGA+CGG 0.488727 2_4:-62244821 None:intergenic
TGGTGGGCAGCTACCAGTTG+AGG 0.498148 2_4:+62244501 Msa0340830:CDS
TTTGGTTTAGGTGCTTCTGC+GGG 0.511687 2_4:-62244039 None:intergenic
GCAGAAGCACCTAAACCAAA+TGG 0.516816 2_4:+62244042 Msa0340830:CDS
AGTGCATCACCATAACCAAC+TGG 0.518295 2_4:-62244785 None:intergenic
CCTTCTTCATTGTCTATCGA+GGG 0.519793 2_4:+62244108 Msa0340830:CDS
GAGAGAGAAAGAGAGAATGA+AGG 0.522626 2_4:-62239443 None:intergenic
AAAGTATTGAACTTGCACTT+TGG 0.522702 2_4:+62240579 Msa0340830:CDS
GTCACTGCAGTACACTAGAT+TGG 0.524258 2_4:+62240659 Msa0340830:CDS
ATAGACAATGAAGAAGGTAC+TGG 0.526221 2_4:-62244102 None:intergenic
TGCTGATTGGTCATTAGATG+GGG 0.529817 2_4:-62240712 None:intergenic
TAGAATCTTGATGACCTCCC+CGG 0.535783 2_4:-62244655 None:intergenic
ACCTTCTTCATTGTCTATCG+AGG 0.541849 2_4:+62244107 Msa0340830:CDS
GTATTTATACTTACAGGAGC+AGG 0.544888 2_4:-62244015 None:intergenic
ATTTGGTTTAGGTGCTTCTG+CGG 0.545135 2_4:-62244040 None:intergenic
TGAAGCCATTGAATTGGAAG+AGG 0.546926 2_4:-62239530 None:intergenic
AGTTTCTACATTGACAACAT+TGG 0.552501 2_4:+62244068 Msa0340830:CDS
AAAGAATGAGAATGGAGGGT+TGG 0.559129 2_4:-62245023 None:intergenic
TGCTCCTCCTTCATGTAATG+AGG 0.560231 2_4:+62244288 Msa0340830:CDS
CCCTCGATAGACAATGAAGA+AGG 0.562111 2_4:-62244108 None:intergenic
TGTTACATTGAACAGCTTGG+TGG 0.563421 2_4:+62244484 Msa0340830:CDS
AACGTATCACAGGTAGCTTA+GGG 0.563493 2_4:+62240544 Msa0340830:intron
ATTTCACCTGCGTGTAGTGA+GGG 0.566652 2_4:+62243954 Msa0340830:CDS
AATTGTACCTCATTACATGA+AGG 0.567951 2_4:-62244295 None:intergenic
CGAGAAAGAATGAGAATGGA+GGG 0.581044 2_4:-62245027 None:intergenic
GTTACATTGAACAGCTTGGT+GGG 0.584700 2_4:+62244485 Msa0340830:CDS
ATCAAGATTCTAAGAGAGGA+TGG 0.587641 2_4:+62244666 Msa0340830:CDS
GAAGCCATTGAATTGGAAGA+GGG 0.588124 2_4:-62239529 None:intergenic
TTGGCATCTTCAGAAGATCT+CGG 0.594306 2_4:+62244248 Msa0340830:CDS
AAAAGCTGCAGATGAAGGGT+TGG 0.594334 2_4:+62244140 Msa0340830:CDS
ATTTGTTACATTGAACAGCT+TGG 0.595450 2_4:+62244481 Msa0340830:CDS
GATTTCACCTGCGTGTAGTG+AGG 0.596484 2_4:+62243953 Msa0340830:CDS
ACGAGAAAGAATGAGAATGG+AGG 0.597759 2_4:-62245028 None:intergenic
GGTGATAATTCATTCTCCAA+CGG 0.599409 2_4:+62244161 Msa0340830:CDS
TTTCTAGTCTGACGTGTCCG+GGG 0.599859 2_4:+62244638 Msa0340830:intron
ACAGCTGTTTCAAGGTCAGA+AGG 0.607336 2_4:+62243499 Msa0340830:intron
GAACAAGTTATATATATGGT+AGG 0.609147 2_4:+62244918 Msa0340830:three_prime_UTR
TATTCAACACTCTTAAACTG+AGG 0.616680 2_4:+62244964 Msa0340830:three_prime_UTR
GGTCATCAAGATTCTAAGAG+AGG 0.618953 2_4:+62244662 Msa0340830:CDS
TAAGAGTGTTGAATACTGCA+GGG 0.627436 2_4:-62244956 None:intergenic
CTAGTCTGACGTGTCCGGGG+AGG 0.637170 2_4:+62244641 Msa0340830:intron
AGAAGGTACTGGTTTCGAGA+TGG 0.639561 2_4:-62244091 None:intergenic
GGTCACTAACTTATGTGAGA+CGG 0.640399 2_4:+62243763 Msa0340830:CDS
GATTAGAACTTTGACGATGG+TGG 0.641199 2_4:+62239370 Msa0340830:five_prime_UTR
TGTACCTCATTACATGAAGG+AGG 0.650394 2_4:-62244292 None:intergenic
ATTAGAACTTTGACGATGGT+GGG 0.650876 2_4:+62239371 Msa0340830:five_prime_UTR
GCTGTTTCAAGGTCAGAAGG+TGG 0.666496 2_4:+62243502 Msa0340830:intron
ACAGGAGCAGGAATTGAAGG+AGG 0.687530 2_4:-62244003 None:intergenic
TGTGATTAGAACTTTGACGA+TGG 0.688296 2_4:+62239367 Msa0340830:five_prime_UTR
TCAAATCCCTCACTACACGC+AGG 0.704009 2_4:-62243960 None:intergenic
GTGTTTGTGACAGATCCAGT+TGG 0.712286 2_4:+62244770 Msa0340830:intron
AAGATTCTAAGAGAGGATGG+CGG 0.764705 2_4:+62244669 Msa0340830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAGTGAAAAAAATTT+AGG + chr2_4:62240268-62240287 Msa0340830:intron 10.0%
!!! TATTATTATTTTTGGGTAAT+TGG + chr2_4:62239735-62239754 Msa0340830:intron 15.0%
!! TTGTATAAAAAACAAAAAAC+AGG - chr2_4:62240000-62240019 None:intergenic 15.0%
!!! TTTTTTGTTTTTTATACAAG+AGG + chr2_4:62240001-62240020 Msa0340830:intron 15.0%
!! TGTTTATTTCATTACATAAT+GGG + chr2_4:62240326-62240345 Msa0340830:intron 15.0%
!! ATATTATATGAGTACATATT+CGG + chr2_4:62241007-62241026 Msa0340830:intron 15.0%
!! TCTAAAAAATAAAAATTGAC+CGG + chr2_4:62241646-62241665 Msa0340830:intron 15.0%
!!! AACATAAGCTTTATAAATAA+TGG - chr2_4:62241779-62241798 None:intergenic 15.0%
!! TTATTTATAAAGCTTATGTT+AGG + chr2_4:62241779-62241798 Msa0340830:intron 15.0%
!!! TTGTTTTCAATTAAATTTTC+CGG - chr2_4:62242842-62242861 None:intergenic 15.0%
!! TTTAAACAGATAAAAAATAG+AGG - chr2_4:62244706-62244725 None:intergenic 15.0%
!! GAGGTTAAAAAAAATATACT+AGG - chr2_4:62239603-62239622 None:intergenic 20.0%
!!! AAAACATTGATATTGTTTTG+AGG - chr2_4:62239622-62239641 None:intergenic 20.0%
!! TAAAGTATATTCTCACAAAA+AGG + chr2_4:62239883-62239902 Msa0340830:intron 20.0%
!! AAAGTATATTCTCACAAAAA+GGG + chr2_4:62239884-62239903 Msa0340830:intron 20.0%
!! TGAAAAGAAATTCAAATGAT+TGG + chr2_4:62240061-62240080 Msa0340830:intron 20.0%
!! GTGTTTATTTCATTACATAA+TGG + chr2_4:62240325-62240344 Msa0340830:intron 20.0%
!!! TTAGAATGGTTTTTATTGTT+TGG + chr2_4:62240490-62240509 Msa0340830:intron 20.0%
!! AAAGAATAAAGAACTTACAT+TGG - chr2_4:62240743-62240762 None:intergenic 20.0%
!!! TTTTTTTTTTTGTCCTACTT+CGG + chr2_4:62240871-62240890 Msa0340830:intron 20.0%
!! TATTATATGAGTACATATTC+GGG + chr2_4:62241008-62241027 Msa0340830:intron 20.0%
!!! CAATTACCATATTTTCATTT+TGG - chr2_4:62241170-62241189 None:intergenic 20.0%
!! TGAAAATATGGTAATTGTTT+AGG + chr2_4:62241173-62241192 Msa0340830:intron 20.0%
!! AGTAATATACTCATATACAT+TGG + chr2_4:62241229-62241248 Msa0340830:intron 20.0%
!!! AATAGACTTAACATTCATTT+TGG + chr2_4:62241338-62241357 Msa0340830:intron 20.0%
!! ATTGATATTAACTTTCTTCA+GGG - chr2_4:62241366-62241385 None:intergenic 20.0%
!! AATTGATATTAACTTTCTTC+AGG - chr2_4:62241367-62241386 None:intergenic 20.0%
!!! ATTGTTGTAACATTTTTAGA+AGG - chr2_4:62241425-62241444 None:intergenic 20.0%
!!! ATTCATGTAATTTTCTACAA+TGG - chr2_4:62241489-62241508 None:intergenic 20.0%
!! TTGTGATCAATAAAAATTCA+GGG - chr2_4:62241826-62241845 None:intergenic 20.0%
!! CAAGTAAAAAAATTTAACGA+AGG + chr2_4:62241843-62241862 Msa0340830:intron 20.0%
!! ATAGAGATTAATGTGTATTT+AGG - chr2_4:62242072-62242091 None:intergenic 20.0%
!! GATAAAAAATAAGAAAGAGT+AGG + chr2_4:62242884-62242903 Msa0340830:intron 20.0%
!!! GTACAGATTTGTATTATTTT+GGG - chr2_4:62242968-62242987 None:intergenic 20.0%
!!! CAAAGAGATTTAAGTTATAT+AGG - chr2_4:62243729-62243748 None:intergenic 20.0%
!!! TTTTAGAGTAGATTATTGAA+AGG - chr2_4:62244218-62244237 None:intergenic 20.0%
!! GTAATAGTAACTATAGTAAA+TGG - chr2_4:62244582-62244601 None:intergenic 20.0%
!! TACTATAGTTACTATTACAA+TGG + chr2_4:62244584-62244603 Msa0340830:intron 20.0%
!!! AACATAATGACATTTTTATG+TGG + chr2_4:62244724-62244743 Msa0340830:intron 20.0%
!! TTGAGAACAAGTTATATATA+TGG + chr2_4:62244914-62244933 Msa0340830:three_prime_UTR 20.0%
!! TATTTTACAACTGGTAAGTT+GGG - chr2_4:62239415-62239434 None:intergenic 25.0%
!!! TTATTTTACAACTGGTAAGT+TGG - chr2_4:62239416-62239435 None:intergenic 25.0%
! TAGGAATTGTAAAGAAAAGA+AGG - chr2_4:62239584-62239603 None:intergenic 25.0%
! AAAGAAATTCAAATGATTGG+TGG + chr2_4:62240064-62240083 Msa0340830:intron 25.0%
!! AAGCTAGTTTATATAAGCTT+GGG + chr2_4:62240234-62240253 Msa0340830:intron 25.0%
! TTTGTTCTTAGAACTTAGAA+TGG + chr2_4:62240476-62240495 Msa0340830:intron 25.0%
!!! ACAAATAACCATCATTTTTG+GGG - chr2_4:62240517-62240536 None:intergenic 25.0%
!!! CACAAATAACCATCATTTTT+GGG - chr2_4:62240518-62240537 None:intergenic 25.0%
!! ACACAAATAACCATCATTTT+TGG - chr2_4:62240519-62240538 None:intergenic 25.0%
! GTAATTGAGTAATAGAACAA+TGG - chr2_4:62240806-62240825 None:intergenic 25.0%
!!! GATGGTAGAAATTTTTCAAT+AGG - chr2_4:62240835-62240854 None:intergenic 25.0%
! TATAGTGTAAGATATACTTC+TGG - chr2_4:62240983-62241002 None:intergenic 25.0%
! ATTATATGAGTACATATTCG+GGG + chr2_4:62241009-62241028 Msa0340830:intron 25.0%
! TGCTATGTTAGTATTATTGA+CGG - chr2_4:62241035-62241054 None:intergenic 25.0%
! ATGGTAATTGTTTAGGAATT+TGG + chr2_4:62241180-62241199 Msa0340830:intron 25.0%
!! TTTTACGCAAGAAAATACAT+TGG + chr2_4:62241261-62241280 Msa0340830:intron 25.0%
!! TGTTTAAAATAATGATCTCC+AGG + chr2_4:62241308-62241327 Msa0340830:intron 25.0%
!! TTAAGTCTATTCTTTTTACC+TGG - chr2_4:62241329-62241348 None:intergenic 25.0%
! ATATCAACTTTCAATGATTG+AGG - chr2_4:62241454-62241473 None:intergenic 25.0%
!! ATGTAATTTTCTACAATGGA+GGG - chr2_4:62241485-62241504 None:intergenic 25.0%
!!! AAGTCATTTTTCATGATTGA+GGG + chr2_4:62241549-62241568 Msa0340830:intron 25.0%
! TAGTAATGTAAATTACACTC+CGG - chr2_4:62241668-62241687 None:intergenic 25.0%
! TGTGATCAATAAAAATTCAG+GGG - chr2_4:62241825-62241844 None:intergenic 25.0%
! CTTGTGATCAATAAAAATTC+AGG - chr2_4:62241827-62241846 None:intergenic 25.0%
!!! TGTATTTAGGTTTTTACTGT+TGG - chr2_4:62242031-62242050 None:intergenic 25.0%
! TAAACGGTATTTGTGTATTT+AGG - chr2_4:62242044-62242063 None:intergenic 25.0%
!! GTGTATTTAGGTCTTTTAAA+CGG - chr2_4:62242060-62242079 None:intergenic 25.0%
! AAAGGTTTATTATAGGAAGA+AGG - chr2_4:62242107-62242126 None:intergenic 25.0%
! TATGAACATGAACAGATATT+TGG + chr2_4:62242242-62242261 Msa0340830:intron 25.0%
!!! GACAAAATCCTTTTTAGAAA+AGG + chr2_4:62242427-62242446 Msa0340830:intron 25.0%
!! GGTACAGATTTGTATTATTT+TGG - chr2_4:62242969-62242988 None:intergenic 25.0%
! AATTATCATGTATAGATAGG+AGG - chr2_4:62243015-62243034 None:intergenic 25.0%
! TCGAATTATCATGTATAGAT+AGG - chr2_4:62243018-62243037 None:intergenic 25.0%
!!! GCTAGGGAATTTTTAATTAA+CGG - chr2_4:62243049-62243068 None:intergenic 25.0%
!!! GTTTTGAAAATCAAACAATG+TGG - chr2_4:62243212-62243231 None:intergenic 25.0%
!!! AACTCTGTTAGTTTTTATCA+AGG + chr2_4:62243229-62243248 Msa0340830:intron 25.0%
! AATTTAACAGTTTCAGTTCT+CGG - chr2_4:62243380-62243399 None:intergenic 25.0%
! TAAAGCAATTGAAATTTGTG+TGG + chr2_4:62243406-62243425 Msa0340830:intron 25.0%
! GATATGTATATATCATAGTC+TGG + chr2_4:62243445-62243464 Msa0340830:intron 25.0%
! AGCTGTTTATCATCAAAAAA+AGG - chr2_4:62243485-62243504 None:intergenic 25.0%
! GCACTAACATCATTAAAATT+GGG - chr2_4:62243571-62243590 None:intergenic 25.0%
! TGCACTAACATCATTAAAAT+TGG - chr2_4:62243572-62243591 None:intergenic 25.0%
!!! TTTGTTTTATTGATGCTGAA+TGG - chr2_4:62243643-62243662 None:intergenic 25.0%
! TATAACTTAAATCTCTTTGC+AGG + chr2_4:62243730-62243749 Msa0340830:intron 25.0%
! TAGAGTACGTGAAAAATATT+GGG - chr2_4:62243857-62243876 None:intergenic 25.0%
! ATAGAGTACGTGAAAAATAT+TGG - chr2_4:62243858-62243877 None:intergenic 25.0%
! ATATATATCATTTGGAGGTT+GGG - chr2_4:62243923-62243942 None:intergenic 25.0%
! TCAAGCTGATATATATCATT+TGG - chr2_4:62243931-62243950 None:intergenic 25.0%
! AATGATATATATCAGCTTGA+TGG + chr2_4:62243931-62243950 Msa0340830:intron 25.0%
! ATATTGAAGCTTCTTTATTC+CGG - chr2_4:62244834-62244853 None:intergenic 25.0%
! GAACAAGTTATATATATGGT+AGG + chr2_4:62244918-62244937 Msa0340830:three_prime_UTR 25.0%
! AAGTTCTAATCACATGCTAA+TGG - chr2_4:62239361-62239380 None:intergenic 30.0%
! ATTTTACAACTGGTAAGTTG+GGG - chr2_4:62239414-62239433 None:intergenic 30.0%
AAAGAAGGAGAAGTAGAAAA+AGG - chr2_4:62239569-62239588 None:intergenic 30.0%
!!! TTATACAAGAGGCTGTTTTT+AGG + chr2_4:62240012-62240031 Msa0340830:intron 30.0%
! TTTCTTTTCATGTGACTGAA+AGG - chr2_4:62240051-62240070 None:intergenic 30.0%
TTTGGAGACTGCATAATTAA+GGG + chr2_4:62240136-62240155 Msa0340830:intron 30.0%
! TTTTACAACCAAACAAAACG+AGG + chr2_4:62240189-62240208 Msa0340830:intron 30.0%
TTTACAACCAAACAAAACGA+GGG + chr2_4:62240190-62240209 Msa0340830:intron 30.0%
! CAAGCTAGTTTATATAAGCT+TGG + chr2_4:62240233-62240252 Msa0340830:intron 30.0%
GCAACCTTTGTAACATTTAT+AGG + chr2_4:62240368-62240387 Msa0340830:intron 30.0%
GTTGCCTATAAATGTTACAA+AGG - chr2_4:62240375-62240394 None:intergenic 30.0%
GTATGTATTGTTCATGCAAA+TGG + chr2_4:62240440-62240459 Msa0340830:intron 30.0%
!! AAAGTATTGAACTTGCACTT+TGG + chr2_4:62240579-62240598 Msa0340830:CDS 30.0%
!! AACATTTTGGTACTAGAAGT+TGG + chr2_4:62240625-62240644 Msa0340830:CDS 30.0%
AATGCATGTGAAATCATTGA+TGG - chr2_4:62240853-62240872 None:intergenic 30.0%
!! ATATTTTCATTTTGGCACGA+GGG - chr2_4:62241162-62241181 None:intergenic 30.0%
!! ACATTTTTAGAAGGCCAAAT+TGG - chr2_4:62241416-62241435 None:intergenic 30.0%
! CATGTAATTTTCTACAATGG+AGG - chr2_4:62241486-62241505 None:intergenic 30.0%
!!! GAAGTCATTTTTCATGATTG+AGG + chr2_4:62241548-62241567 Msa0340830:intron 30.0%
ATTGATGTCACCTATATCTT+TGG + chr2_4:62241602-62241621 Msa0340830:intron 30.0%
TTATTGTCCTCCAAAGATAT+AGG - chr2_4:62241615-62241634 None:intergenic 30.0%
! TATCTTTGGAGGACAATAAT+AGG + chr2_4:62241616-62241635 Msa0340830:intron 30.0%
TGAAAATTGCTTAGCTAAAC+TGG - chr2_4:62241897-62241916 None:intergenic 30.0%
!! CCTTTTATAAAGAGAAGCAT+GGG - chr2_4:62241941-62241960 None:intergenic 30.0%
! ACCTTTTATAAAGAGAAGCA+TGG - chr2_4:62241942-62241961 None:intergenic 30.0%
TGCTTCTCTTTATAAAAGGT+TGG + chr2_4:62241942-62241961 Msa0340830:intron 30.0%
!! GGTTGTTATTTCTGTTTAGT+TGG - chr2_4:62241997-62242016 None:intergenic 30.0%
!! AGGCTCTAAAGGTTTATTAT+AGG - chr2_4:62242114-62242133 None:intergenic 30.0%
! TTTAAAATCAAACTGCTCAG+AGG - chr2_4:62242290-62242309 None:intergenic 30.0%
! AACACTAACCTACAAGTTTT+GGG - chr2_4:62242478-62242497 None:intergenic 30.0%
ACAGATATGATCAGAACAAT+TGG - chr2_4:62242547-62242566 None:intergenic 30.0%
AATTGTTCTGATCATATCTG+TGG + chr2_4:62242546-62242565 Msa0340830:intron 30.0%
AGAAAACCAAGATCCAAATT+GGG - chr2_4:62242581-62242600 None:intergenic 30.0%
AAGAAAACCAAGATCCAAAT+TGG - chr2_4:62242582-62242601 None:intergenic 30.0%
TCAAACCAATTGTTAGAAAC+CGG + chr2_4:62242820-62242839 Msa0340830:intron 30.0%
! ATTTTCCGGTTTCTAACAAT+TGG - chr2_4:62242828-62242847 None:intergenic 30.0%
!! TATTTTGGGTGAATAGACAA+TGG - chr2_4:62242954-62242973 None:intergenic 30.0%
AATGAGTTAGAGAAAGGATA+TGG - chr2_4:62242990-62243009 None:intergenic 30.0%
GTTAGTTAGGATATAGGATA+AGG - chr2_4:62243080-62243099 None:intergenic 30.0%
TAAGGAGTTAGTTAGGATAT+AGG - chr2_4:62243086-62243105 None:intergenic 30.0%
! AGTTTTTATCAAGGTTCTGT+TGG + chr2_4:62243238-62243257 Msa0340830:intron 30.0%
!! TCTGTTGGTTTATGTCAATA+TGG + chr2_4:62243253-62243272 Msa0340830:intron 30.0%
!! CTGTTGGTTTATGTCAATAT+GGG + chr2_4:62243254-62243273 Msa0340830:intron 30.0%
TCTGAAGAGATTAAATCTTC+TGG + chr2_4:62243526-62243545 Msa0340830:CDS 30.0%
CAATGAAGAAGAAACAACAA+AGG - chr2_4:62243893-62243912 None:intergenic 30.0%
GATATATATCATTTGGAGGT+TGG - chr2_4:62243924-62243943 None:intergenic 30.0%
AGCTGATATATATCATTTGG+AGG - chr2_4:62243928-62243947 None:intergenic 30.0%
AATGTAGAAACTGATCCATT+TGG - chr2_4:62244060-62244079 None:intergenic 30.0%
AGTTTCTACATTGACAACAT+TGG + chr2_4:62244068-62244087 Msa0340830:CDS 30.0%
AATTGTACCTCATTACATGA+AGG - chr2_4:62244298-62244317 None:intergenic 30.0%
ATGTAATGAGGTACAATTGA+AGG + chr2_4:62244300-62244319 Msa0340830:intron 30.0%
! ATTTGTTACATTGAACAGCT+TGG + chr2_4:62244481-62244500 Msa0340830:CDS 30.0%
TTTAATACACAAACCTCAAC+TGG - chr2_4:62244517-62244536 None:intergenic 30.0%
CAGACTAGAAAGAAATTTGA+AGG - chr2_4:62244629-62244648 None:intergenic 30.0%
TATTGAAGCTTCTTTATTCC+GGG - chr2_4:62244833-62244852 None:intergenic 30.0%
TATTCAACACTCTTAAACTG+AGG + chr2_4:62244964-62244983 Msa0340830:three_prime_UTR 30.0%
!!! TGAGGTTATTTTTTCCCAAA+AGG + chr2_4:62244982-62245001 Msa0340830:three_prime_UTR 30.0%
!!! GAGGTTATTTTTTCCCAAAA+GGG + chr2_4:62244983-62245002 Msa0340830:three_prime_UTR 30.0%
! TTATCCTTATCTTCCCTTTT+GGG - chr2_4:62244999-62245018 None:intergenic 30.0%
! TTTATCCTTATCTTCCCTTT+TGG - chr2_4:62245000-62245019 None:intergenic 30.0%
TGTGATTAGAACTTTGACGA+TGG + chr2_4:62239367-62239386 Msa0340830:five_prime_UTR 35.0%
ATTAGAACTTTGACGATGGT+GGG + chr2_4:62239371-62239390 Msa0340830:five_prime_UTR 35.0%
!! GTTGACGGTTATTTTACAAC+TGG - chr2_4:62239424-62239443 None:intergenic 35.0%
AAAGAGAGAATGAAGGTTGA+CGG - chr2_4:62239439-62239458 None:intergenic 35.0%
TAATCCCTCTTCCAATTCAA+TGG + chr2_4:62239525-62239544 Msa0340830:exon 35.0%
GTTTGGAGACTGCATAATTA+AGG + chr2_4:62240135-62240154 Msa0340830:intron 35.0%
GGTTTATCGTGTAAATGCTT+AGG + chr2_4:62240157-62240176 Msa0340830:intron 35.0%
TAAACACTTGTGTAAGTGCT+TGG - chr2_4:62240312-62240331 None:intergenic 35.0%
ACAAAATGACTCTCAACGAT+AGG - chr2_4:62240409-62240428 None:intergenic 35.0%
! TGTGTCATTAAACGTATCAC+AGG + chr2_4:62240534-62240553 Msa0340830:intron 35.0%
! GTTGAGCTTTCACAACATTT+TGG + chr2_4:62240612-62240631 Msa0340830:CDS 35.0%
!!! TTTTTTTGTCCTACTTCGGA+CGG + chr2_4:62240875-62240894 Msa0340830:intron 35.0%
TGTTGATGTCATACTGTATG+TGG + chr2_4:62240927-62240946 Msa0340830:intron 35.0%
AGTGTATAGTGTAAACACTC+AGG + chr2_4:62240955-62240974 Msa0340830:intron 35.0%
CATTACATTAGCTAGCAAGA+GGG - chr2_4:62241086-62241105 None:intergenic 35.0%
CTCTTGCTAGCTAATGTAAT+GGG + chr2_4:62241085-62241104 Msa0340830:intron 35.0%
AACAAAACAGGCAACAAACA+AGG - chr2_4:62241133-62241152 None:intergenic 35.0%
!! TATTTTCATTTTGGCACGAG+GGG - chr2_4:62241161-62241180 None:intergenic 35.0%
!! CATATTTTCATTTTGGCACG+AGG - chr2_4:62241163-62241182 None:intergenic 35.0%
CTCGTGCCAAAATGAAAATA+TGG + chr2_4:62241161-62241180 Msa0340830:intron 35.0%
TAAACCTGGACTTTCTTTGA+AGG + chr2_4:62241574-62241593 Msa0340830:intron 35.0%
AAAGCTTATGTTAGGATCTC+TGG + chr2_4:62241787-62241806 Msa0340830:intron 35.0%
CCCATGCTTCTCTTTATAAA+AGG + chr2_4:62241938-62241957 Msa0340830:intron 35.0%
! TTACTGTTGGATCTTTTTGC+AGG - chr2_4:62242018-62242037 None:intergenic 35.0%
GAAAATCAGTAAGTGTTTGC+TGG + chr2_4:62242156-62242175 Msa0340830:intron 35.0%
CCACAAGAACACATTTATCA+AGG - chr2_4:62242403-62242422 None:intergenic 35.0%
CCTTGATAAATGTGTTCTTG+TGG + chr2_4:62242400-62242419 Msa0340830:intron 35.0%
!! AGGCACAACCTTTTCTAAAA+AGG - chr2_4:62242438-62242457 None:intergenic 35.0%
! CAACACTAACCTACAAGTTT+TGG - chr2_4:62242479-62242498 None:intergenic 35.0%
ATGATCAGAACAATTGGAGA+GGG - chr2_4:62242541-62242560 None:intergenic 35.0%
TATGATCAGAACAATTGGAG+AGG - chr2_4:62242542-62242561 None:intergenic 35.0%
GTGGAAAATGATTCCCAATT+TGG + chr2_4:62242565-62242584 Msa0340830:intron 35.0%
ATGATTCCCAATTTGGATCT+TGG + chr2_4:62242572-62242591 Msa0340830:intron 35.0%
TTACGTCCATAAGTTGCATT+GGG - chr2_4:62242656-62242675 None:intergenic 35.0%
ATTACGTCCATAAGTTGCAT+TGG - chr2_4:62242657-62242676 None:intergenic 35.0%
GAGGATAATGAGTTAGAGAA+AGG - chr2_4:62242996-62243015 None:intergenic 35.0%
AGTTAGGATATAGGATAAGG+AGG - chr2_4:62243077-62243096 None:intergenic 35.0%
CATAGGATAAGGAGTTAGTT+AGG - chr2_4:62243093-62243112 None:intergenic 35.0%
ATCTGTTAGGACATAGGATA+AGG - chr2_4:62243104-62243123 None:intergenic 35.0%
CTATGTCCTAACAGATTCAT+GGG + chr2_4:62243108-62243127 Msa0340830:intron 35.0%
TATGTCCTAACAGATTCATG+GGG + chr2_4:62243109-62243128 Msa0340830:intron 35.0%
GAAAATCAAACAATGTGGAC+TGG - chr2_4:62243207-62243226 None:intergenic 35.0%
TGTCAATATGGGATTCTATG+AGG + chr2_4:62243265-62243284 Msa0340830:intron 35.0%
CTCATATGTTCATGCATTCA+TGG + chr2_4:62243294-62243313 Msa0340830:intron 35.0%
! GATGATAAACAGCTGTTTCA+AGG + chr2_4:62243491-62243510 Msa0340830:intron 35.0%
AACTTAAATCTCTTTGCAGG+TGG + chr2_4:62243733-62243752 Msa0340830:intron 35.0%
GTATTTATACTTACAGGAGC+AGG - chr2_4:62244018-62244037 None:intergenic 35.0%
! GAAACTGATCCATTTGGTTT+AGG - chr2_4:62244054-62244073 None:intergenic 35.0%
! ATAGACAATGAAGAAGGTAC+TGG - chr2_4:62244105-62244124 None:intergenic 35.0%
TAGAAAAAGCTGCAGATGAA+GGG + chr2_4:62244136-62244155 Msa0340830:CDS 35.0%
GGTGATAATTCATTCTCCAA+CGG + chr2_4:62244161-62244180 Msa0340830:CDS 35.0%
!!! TTGTTTTAGAGTCTTACCGT+TGG - chr2_4:62244180-62244199 None:intergenic 35.0%
GATTTCTCAACATACACATG+AGG - chr2_4:62244390-62244409 None:intergenic 35.0%
TTGACAGATGCAAAAAGTTG+AGG + chr2_4:62244447-62244466 Msa0340830:intron 35.0%
! ATCAAGATTCTAAGAGAGGA+TGG + chr2_4:62244666-62244685 Msa0340830:CDS 35.0%
TTCTTTATTCCGGGAAATGA+CGG - chr2_4:62244824-62244843 None:intergenic 35.0%
!! TAAGAGTGTTGAATACTGCA+GGG - chr2_4:62244959-62244978 None:intergenic 35.0%
!! TTAAGAGTGTTGAATACTGC+AGG - chr2_4:62244960-62244979 None:intergenic 35.0%
! TTTTCCCAAAAGGGAAGATA+AGG + chr2_4:62244992-62245011 Msa0340830:three_prime_UTR 35.0%
GATTAGAACTTTGACGATGG+TGG + chr2_4:62239370-62239389 Msa0340830:five_prime_UTR 40.0%
GAGAGAGAAAGAGAGAATGA+AGG - chr2_4:62239446-62239465 None:intergenic 40.0%
GAAGCCATTGAATTGGAAGA+GGG - chr2_4:62239532-62239551 None:intergenic 40.0%
TGAAGCCATTGAATTGGAAG+AGG - chr2_4:62239533-62239552 None:intergenic 40.0%
GTGAGATGAAGCCATTGAAT+TGG - chr2_4:62239539-62239558 None:intergenic 40.0%
GCATCAACACTTCTGATTGA+TGG - chr2_4:62239848-62239867 None:intergenic 40.0%
AATCTCCAAACACAAACCCT+AGG + chr2_4:62240097-62240116 Msa0340830:intron 40.0%
ATCTCCAAACACAAACCCTA+GGG + chr2_4:62240098-62240117 Msa0340830:intron 40.0%
ACAAACCCTAGGGATCATTA+AGG + chr2_4:62240108-62240127 Msa0340830:intron 40.0%
AACCAAACAAAACGAGGGAA+AGG + chr2_4:62240195-62240214 Msa0340830:intron 40.0%
!! AACCTTTCCCTCGTTTTGTT+TGG - chr2_4:62240200-62240219 None:intergenic 40.0%
TGTTTGGACCCCAAAAATGA+TGG + chr2_4:62240506-62240525 Msa0340830:intron 40.0%
AAACGTATCACAGGTAGCTT+AGG + chr2_4:62240543-62240562 Msa0340830:intron 40.0%
AACGTATCACAGGTAGCTTA+GGG + chr2_4:62240544-62240563 Msa0340830:intron 40.0%
GTACTAGAAGTTGGATCAGT+AGG + chr2_4:62240634-62240653 Msa0340830:CDS 40.0%
! TGCTGATTGGTCATTAGATG+GGG - chr2_4:62240715-62240734 None:intergenic 40.0%
! CTGCTGATTGGTCATTAGAT+GGG - chr2_4:62240716-62240735 None:intergenic 40.0%
! TCTGCTGATTGGTCATTAGA+TGG - chr2_4:62240717-62240736 None:intergenic 40.0%
TACATTGGATCTCTGCTGAT+TGG - chr2_4:62240728-62240747 None:intergenic 40.0%
! GGACGGAAATGATGTGTTTT+AGG + chr2_4:62240892-62240911 Msa0340830:intron 40.0%
CCATTACATTAGCTAGCAAG+AGG - chr2_4:62241087-62241106 None:intergenic 40.0%
CCTCTTGCTAGCTAATGTAA+TGG + chr2_4:62241084-62241103 Msa0340830:intron 40.0%
!! ATTTTCATTTTGGCACGAGG+GGG - chr2_4:62241160-62241179 None:intergenic 40.0%
AATCCCTCAATCACAGAAAG+CGG + chr2_4:62241388-62241407 Msa0340830:intron 40.0%
TCCCACTTGTGATTCGTAAA+CGG + chr2_4:62241513-62241532 Msa0340830:intron 40.0%
TCCGTTTACGAATCACAAGT+GGG - chr2_4:62241517-62241536 None:intergenic 40.0%
TTCCGTTTACGAATCACAAG+TGG - chr2_4:62241518-62241537 None:intergenic 40.0%
TTGTCCTTCAAAGAAAGTCC+AGG - chr2_4:62241581-62241600 None:intergenic 40.0%
GATGTCACCTATATCTTTGG+AGG + chr2_4:62241605-62241624 Msa0340830:intron 40.0%
TGAATCTCTTCCTAGAGAGA+AGG - chr2_4:62242134-62242153 None:intergenic 40.0%
! CTCGACAATTGGTTCATCTT+CGG + chr2_4:62242209-62242228 Msa0340830:intron 40.0%
CACCAAGAATCTTTGTTCTC+GGG - chr2_4:62242373-62242392 None:intergenic 40.0%
CCACCAAGAATCTTTGTTCT+CGG - chr2_4:62242374-62242393 None:intergenic 40.0%
GCTAAGGCTGAAAAGTTCTT+TGG - chr2_4:62242694-62242713 None:intergenic 40.0%
!! TAACAATTGGTTTGACCTGC+TGG - chr2_4:62242815-62242834 None:intergenic 40.0%
GTAGAATAGCAGATCCTTAG+AGG - chr2_4:62242924-62242943 None:intergenic 40.0%
CCATGAATCTGTTAGGACAT+AGG - chr2_4:62243110-62243129 None:intergenic 40.0%
CCTATGTCCTAACAGATTCA+TGG + chr2_4:62243107-62243126 Msa0340830:intron 40.0%
ATGTCCTAACAGATTCATGG+GGG + chr2_4:62243110-62243129 Msa0340830:intron 40.0%
TGCAAACTAGTGTATGCAGT+TGG - chr2_4:62243145-62243164 None:intergenic 40.0%
GGTCACTAACTTATGTGAGA+CGG + chr2_4:62243763-62243782 Msa0340830:CDS 40.0%
TTATGTGAGACGGCATCAAT+TGG + chr2_4:62243773-62243792 Msa0340830:CDS 40.0%
GCGGGTGTATTTATACTTAC+AGG - chr2_4:62244024-62244043 None:intergenic 40.0%
! ATTTGGTTTAGGTGCTTCTG+CGG - chr2_4:62244043-62244062 None:intergenic 40.0%
ACCTTCTTCATTGTCTATCG+AGG + chr2_4:62244107-62244126 Msa0340830:CDS 40.0%
CCTTCTTCATTGTCTATCGA+GGG + chr2_4:62244108-62244127 Msa0340830:CDS 40.0%
!! CTTCATCTGCAGCTTTTTCT+AGG - chr2_4:62244137-62244156 None:intergenic 40.0%
CTAGAAAAAGCTGCAGATGA+AGG + chr2_4:62244135-62244154 Msa0340830:CDS 40.0%
!! ATCTACTCTAAAACCAGAGC+AGG + chr2_4:62244225-62244244 Msa0340830:intron 40.0%
TTGGCATCTTCAGAAGATCT+CGG + chr2_4:62244248-62244267 Msa0340830:CDS 40.0%
AGAAGATCTCGGACGATAAA+GGG + chr2_4:62244259-62244278 Msa0340830:CDS 40.0%
TGTACCTCATTACATGAAGG+AGG - chr2_4:62244295-62244314 None:intergenic 40.0%
!! GGCCTTTCCTTCTCATTTTT+CGG + chr2_4:62244321-62244340 Msa0340830:intron 40.0%
!! GCCTTTCCTTCTCATTTTTC+GGG + chr2_4:62244322-62244341 Msa0340830:intron 40.0%
!!! TTTCCTTCTCATTTTTCGGG+CGG + chr2_4:62244325-62244344 Msa0340830:intron 40.0%
CAGATGCAAAAAGTTGAGGA+CGG + chr2_4:62244451-62244470 Msa0340830:intron 40.0%
AGATGCAAAAAGTTGAGGAC+GGG + chr2_4:62244452-62244471 Msa0340830:intron 40.0%
TGTTACATTGAACAGCTTGG+TGG + chr2_4:62244484-62244503 Msa0340830:CDS 40.0%
GTTACATTGAACAGCTTGGT+GGG + chr2_4:62244485-62244504 Msa0340830:CDS 40.0%
GATGAGAATCTGAAAGAGCT+AGG - chr2_4:62244547-62244566 None:intergenic 40.0%
! GGTCATCAAGATTCTAAGAG+AGG + chr2_4:62244662-62244681 Msa0340830:CDS 40.0%
! AAGATTCTAAGAGAGGATGG+CGG + chr2_4:62244669-62244688 Msa0340830:CDS 40.0%
AAAGAATGAGAATGGAGGGT+TGG - chr2_4:62245026-62245045 None:intergenic 40.0%
! GCGGGAGCTTTTTAATGCAT+CGG - chr2_4:62239921-62239940 None:intergenic 45.0%
AAAATAGTGAGACCCCTTCC+CGG - chr2_4:62239955-62239974 None:intergenic 45.0%
TGATCCCTAGGGTTTGTGTT+TGG - chr2_4:62240105-62240124 None:intergenic 45.0%
AACCCTAGGGATCATTAAGG+AGG + chr2_4:62240111-62240130 Msa0340830:intron 45.0%
CACCTCCTTAATGATCCCTA+GGG - chr2_4:62240116-62240135 None:intergenic 45.0%
ACACCTCCTTAATGATCCCT+AGG - chr2_4:62240117-62240136 None:intergenic 45.0%
!! GGGATCATTAAGGAGGTGTT+TGG + chr2_4:62240118-62240137 Msa0340830:intron 45.0%
GTCACTGCAGTACACTAGAT+TGG + chr2_4:62240659-62240678 Msa0340830:CDS 45.0%
ACATCATTTCCGTCCGAAGT+AGG - chr2_4:62240887-62240906 None:intergenic 45.0%
!! TAAGGCCAGGGGTTGATAAT+TGG - chr2_4:62241060-62241079 None:intergenic 45.0%
TAGCTAGCAAGAGGGATGTA+AGG - chr2_4:62241078-62241097 None:intergenic 45.0%
! TAATGGGCACAACCCTTCTA+AGG + chr2_4:62241101-62241120 Msa0340830:intron 45.0%
ACAAGGCTAGGTCCTTAGAA+GGG - chr2_4:62241116-62241135 None:intergenic 45.0%
AACAAGGCTAGGTCCTTAGA+AGG - chr2_4:62241117-62241136 None:intergenic 45.0%
AACAGGCAACAAACAAGGCT+AGG - chr2_4:62241128-62241147 None:intergenic 45.0%
CATGATTGAGGGACTAAACC+TGG + chr2_4:62241560-62241579 Msa0340830:intron 45.0%
AGCACTGTCTTCTTTCACAC+TGG + chr2_4:62241866-62241885 Msa0340830:intron 45.0%
!! ACCTTTAGAGCCTTCTCTCT+AGG + chr2_4:62242121-62242140 Msa0340830:intron 45.0%
! TCCTAGAGAGAAGGCTCTAA+AGG - chr2_4:62242125-62242144 None:intergenic 45.0%
ATCGAGGTTGTTATCGAGGT+CGG - chr2_4:62242189-62242208 None:intergenic 45.0%
ACAACCTCGATCTCGACAAT+TGG + chr2_4:62242198-62242217 Msa0340830:intron 45.0%
TGAACCAATTGTCGAGATCG+AGG - chr2_4:62242205-62242224 None:intergenic 45.0%
! ATGAGACTAGTCCAAGGGTT+TGG - chr2_4:62242335-62242354 None:intergenic 45.0%
TGTTCTCGGGCAAGAAAGTT+GGG - chr2_4:62242360-62242379 None:intergenic 45.0%
TTGTTCTCGGGCAAGAAAGT+TGG - chr2_4:62242361-62242380 None:intergenic 45.0%
TGCCCGAGAACAAAGATTCT+TGG + chr2_4:62242368-62242387 Msa0340830:intron 45.0%
CCGAGAACAAAGATTCTTGG+TGG + chr2_4:62242371-62242390 Msa0340830:intron 45.0%
TTTGGGTGAGTCGAACAAGT+TGG - chr2_4:62242461-62242480 None:intergenic 45.0%
TCGACTCACCCAAAACTTGT+AGG + chr2_4:62242467-62242486 Msa0340830:intron 45.0%
TTGTTACAGGGGATCGACAA+TGG - chr2_4:62242509-62242528 None:intergenic 45.0%
TGAACGCCCAATGCAACTTA+TGG + chr2_4:62242647-62242666 Msa0340830:intron 45.0%
CCTTAGCAATCCAACCAACA+GGG + chr2_4:62242707-62242726 Msa0340830:intron 45.0%
GGAGGACATGTGAGCTAAAA+GGG - chr2_4:62242761-62242780 None:intergenic 45.0%
AGAGATCTCTCTCTCCTCTA+AGG + chr2_4:62242907-62242926 Msa0340830:intron 45.0%
! ACAGCTGTTTCAAGGTCAGA+AGG + chr2_4:62243499-62243518 Msa0340830:intron 45.0%
CTCTTTGCAGGTGGAATTCT+TGG + chr2_4:62243742-62243761 Msa0340830:intron 45.0%
ATTTCACCTGCGTGTAGTGA+GGG + chr2_4:62243954-62243973 Msa0340830:CDS 45.0%
CTTACAGGAGCAGGAATTGA+AGG - chr2_4:62244009-62244028 None:intergenic 45.0%
! TTTGGTTTAGGTGCTTCTGC+GGG - chr2_4:62244042-62244061 None:intergenic 45.0%
!! GCAGAAGCACCTAAACCAAA+TGG + chr2_4:62244042-62244061 Msa0340830:CDS 45.0%
!! AGAAGGTACTGGTTTCGAGA+TGG - chr2_4:62244094-62244113 None:intergenic 45.0%
CCCTCGATAGACAATGAAGA+AGG - chr2_4:62244111-62244130 None:intergenic 45.0%
AAAAGCTGCAGATGAAGGGT+TGG + chr2_4:62244140-62244159 Msa0340830:CDS 45.0%
!! ACTCTAAAACCAGAGCAGGT+TGG + chr2_4:62244229-62244248 Msa0340830:intron 45.0%
CAGAAGATCTCGGACGATAA+AGG + chr2_4:62244258-62244277 Msa0340830:CDS 45.0%
TGCTCCTCCTTCATGTAATG+AGG + chr2_4:62244288-62244307 Msa0340830:CDS 45.0%
GCCCGAAAAATGAGAAGGAA+AGG - chr2_4:62244326-62244345 None:intergenic 45.0%
! TCTTTCTAGTCTGACGTGTC+CGG + chr2_4:62244636-62244655 Msa0340830:intron 45.0%
! TAGAATCTTGATGACCTCCC+CGG - chr2_4:62244658-62244677 None:intergenic 45.0%
GTGTTTGTGACAGATCCAGT+TGG + chr2_4:62244770-62244789 Msa0340830:intron 45.0%
GTGACAGATCCAGTTGGTTA+TGG + chr2_4:62244776-62244795 Msa0340830:intron 45.0%
AGTGCATCACCATAACCAAC+TGG - chr2_4:62244788-62244807 None:intergenic 45.0%
GCAATATTGCCGTCATTTCC+CGG + chr2_4:62244812-62244831 Msa0340830:CDS 45.0%
!!! TTGTTTTATATTATTATTTT+TGG + chr2_4:62239727-62239746 Msa0340830:intron 5.0%
!!! TGTTTTATATTATTATTTTT+GGG + chr2_4:62239728-62239747 Msa0340830:intron 5.0%
GTTGGGGACTTGGATTGCTT+TGG - chr2_4:62239398-62239417 None:intergenic 50.0%
! CAACTGGTAAGTTGGGGACT+TGG - chr2_4:62239408-62239427 None:intergenic 50.0%
TAAAAAGCTCCCGCATACGC+AGG + chr2_4:62239927-62239946 Msa0340830:intron 50.0%
! GGGAAGGGGTCTCACTATTT+TGG + chr2_4:62239954-62239973 Msa0340830:intron 50.0%
GCATGCCAATTATCAACCCC+TGG + chr2_4:62241052-62241071 Msa0340830:intron 50.0%
CGAGGGGGAAGAAACAAAAC+AGG - chr2_4:62241145-62241164 None:intergenic 50.0%
!! GTGCCGCTTTCTGTGATTGA+GGG - chr2_4:62241394-62241413 None:intergenic 50.0%
CACAGAAAGCGGCACCAATT+TGG + chr2_4:62241399-62241418 Msa0340830:intron 50.0%
CGAGATCGAGGTTGTTATCG+AGG - chr2_4:62242193-62242212 None:intergenic 50.0%
CTGCTCAGAGGAGACAATCA+TGG - chr2_4:62242278-62242297 None:intergenic 50.0%
!! CCAAGGGTTTGGTGTCAACA+AGG - chr2_4:62242324-62242343 None:intergenic 50.0%
CCTTGTTGACACCAAACCCT+TGG + chr2_4:62242321-62242340 Msa0340830:intron 50.0%
! GGGTGATGAGACTAGTCCAA+GGG - chr2_4:62242340-62242359 None:intergenic 50.0%
! TGGGTGATGAGACTAGTCCA+AGG - chr2_4:62242341-62242360 None:intergenic 50.0%
TACAGGGGATCGACAATGGA+GGG - chr2_4:62242505-62242524 None:intergenic 50.0%
TTACAGGGGATCGACAATGG+AGG - chr2_4:62242506-62242525 None:intergenic 50.0%
GGAAGCAGTGGTTGTTACAG+GGG - chr2_4:62242520-62242539 None:intergenic 50.0%
GGGAAGCAGTGGTTGTTACA+GGG - chr2_4:62242521-62242540 None:intergenic 50.0%
AGGGAAGCAGTGGTTGTTAC+AGG - chr2_4:62242522-62242541 None:intergenic 50.0%
ACAATTGGAGAGGGAAGCAG+TGG - chr2_4:62242532-62242551 None:intergenic 50.0%
GCCTTAGCAATCCAACCAAC+AGG + chr2_4:62242706-62242725 Msa0340830:intron 50.0%
! CCCTGTTGGTTGGATTGCTA+AGG - chr2_4:62242710-62242729 None:intergenic 50.0%
TAGCGCTGCCAGTACTTAAC+GGG - chr2_4:62242738-62242757 None:intergenic 50.0%
GTAGCGCTGCCAGTACTTAA+CGG - chr2_4:62242739-62242758 None:intergenic 50.0%
GGGAGGACATGTGAGCTAAA+AGG - chr2_4:62242762-62242781 None:intergenic 50.0%
TTTGACCTGCTGGATCTTCG+AGG - chr2_4:62242805-62242824 None:intergenic 50.0%
GGATAAGGAGGAGCTAGCTA+GGG - chr2_4:62243065-62243084 None:intergenic 50.0%
AGGATAAGGAGGAGCTAGCT+AGG - chr2_4:62243066-62243085 None:intergenic 50.0%
GAAGCCCCCATGAATCTGTT+AGG - chr2_4:62243117-62243136 None:intergenic 50.0%
! GCTGTTTCAAGGTCAGAAGG+TGG + chr2_4:62243502-62243521 Msa0340830:intron 50.0%
TCATTTGGAGGTTGGGCAGA+TGG - chr2_4:62243916-62243935 None:intergenic 50.0%
GATTTCACCTGCGTGTAGTG+AGG + chr2_4:62243953-62243972 Msa0340830:CDS 50.0%
TCAAATCCCTCACTACACGC+AGG - chr2_4:62243963-62243982 None:intergenic 50.0%
ACAGGAGCAGGAATTGAAGG+AGG - chr2_4:62244006-62244025 None:intergenic 50.0%
TGACCGCCCGAAAAATGAGA+AGG - chr2_4:62244331-62244350 None:intergenic 50.0%
! CTTTCTAGTCTGACGTGTCC+GGG + chr2_4:62244637-62244656 Msa0340830:intron 50.0%
! TTTCTAGTCTGACGTGTCCG+GGG + chr2_4:62244638-62244657 Msa0340830:intron 50.0%
! AAGAGAGGATGGCGGTTAGT+TGG + chr2_4:62244677-62244696 Msa0340830:intron 50.0%
GCGTGTCTAGTGACCAACAC+GGG - chr2_4:62239826-62239845 None:intergenic 55.0%
GGCGTGTCTAGTGACCAACA+CGG - chr2_4:62239827-62239846 None:intergenic 55.0%
CAAGAGGGATGTAAGGCCAG+GGG - chr2_4:62241071-62241090 None:intergenic 55.0%
GCAAGAGGGATGTAAGGCCA+GGG - chr2_4:62241072-62241091 None:intergenic 55.0%
AGCAAGAGGGATGTAAGGCC+AGG - chr2_4:62241073-62241092 None:intergenic 55.0%
!! GGTGCCGCTTTCTGTGATTG+AGG - chr2_4:62241395-62241414 None:intergenic 55.0%
! GGGTGAGTCGAACAAGTTGG+AGG - chr2_4:62242458-62242477 None:intergenic 55.0%
GCATTGGGCGTTCATGAGCA+CGG - chr2_4:62242641-62242660 None:intergenic 55.0%
CTGCCAGTACTTAACGGGAC+AGG - chr2_4:62242733-62242752 None:intergenic 55.0%
AGAGTCAGCAATGCCGGAGT+GGG - chr2_4:62242782-62242801 None:intergenic 55.0%
TCGAGGAGAGTCAGCAATGC+CGG - chr2_4:62242788-62242807 None:intergenic 55.0%
ACTCTCCTCGAAGATCCAGC+AGG + chr2_4:62242797-62242816 Msa0340830:intron 55.0%
CTGAAGATGCCAACCTGCTC+TGG - chr2_4:62244241-62244260 None:intergenic 55.0%
! CGTGTCGATGTCACCCGTGT+TGG + chr2_4:62239810-62239829 Msa0340830:intron 60.0%
TTCCCGGAACCTGCGTATGC+GGG - chr2_4:62239939-62239958 None:intergenic 60.0%
CTTCCCGGAACCTGCGTATG+CGG - chr2_4:62239940-62239959 None:intergenic 60.0%
GCATACGCAGGTTCCGGGAA+GGG + chr2_4:62239939-62239958 Msa0340830:intron 60.0%
CATACGCAGGTTCCGGGAAG+GGG + chr2_4:62239940-62239959 Msa0340830:intron 60.0%
CTTAACGGGACAGGCCCTGT+TGG - chr2_4:62242724-62242743 None:intergenic 60.0%
GGGCCTGTCCCGTTAAGTAC+TGG + chr2_4:62242727-62242746 Msa0340830:intron 60.0%
GCTCACATGTCCTCCCACTC+CGG + chr2_4:62242766-62242785 Msa0340830:intron 60.0%
GAGAGTCAGCAATGCCGGAG+TGG - chr2_4:62242783-62242802 None:intergenic 60.0%
! TGGTGGGCAGCTACCAGTTG+AGG + chr2_4:62244501-62244520 Msa0340830:CDS 60.0%
GCTCCCGCATACGCAGGTTC+CGG + chr2_4:62239933-62239952 Msa0340830:intron 65.0%
CTCCCGCATACGCAGGTTCC+GGG + chr2_4:62239934-62239953 Msa0340830:intron 65.0%
CGCATACGCAGGTTCCGGGA+AGG + chr2_4:62239938-62239957 Msa0340830:intron 65.0%
ACGGGACAGGCCCTGTTGGT+TGG - chr2_4:62242720-62242739 None:intergenic 65.0%
GTCAGCAATGCCGGAGTGGG+AGG - chr2_4:62242779-62242798 None:intergenic 65.0%
CTAGTCTGACGTGTCCGGGG+AGG + chr2_4:62244641-62244660 Msa0340830:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 62239357 62245046 62239357 ID=Msa0340830;Name=Msa0340830
chr2_4 mRNA 62239357 62245046 62239357 ID=Msa0340830-mRNA-1;Parent=Msa0340830;Name=Msa0340830-mRNA-1;_AED=0.12;_eAED=0.12;_QI=187|1|1|1|0.75|0.88|9|190|277
chr2_4 exon 62239357 62239559 62239357 ID=Msa0340830-mRNA-1:exon:19734;Parent=Msa0340830-mRNA-1
chr2_4 exon 62240556 62240744 62240556 ID=Msa0340830-mRNA-1:exon:19735;Parent=Msa0340830-mRNA-1
chr2_4 exon 62243503 62243582 62243503 ID=Msa0340830-mRNA-1:exon:19736;Parent=Msa0340830-mRNA-1
chr2_4 exon 62243752 62243811 62243752 ID=Msa0340830-mRNA-1:exon:19737;Parent=Msa0340830-mRNA-1
chr2_4 exon 62243946 62244182 62243946 ID=Msa0340830-mRNA-1:exon:19738;Parent=Msa0340830-mRNA-1
chr2_4 exon 62244247 62244309 62244247 ID=Msa0340830-mRNA-1:exon:19739;Parent=Msa0340830-mRNA-1
chr2_4 exon 62244454 62244522 62244454 ID=Msa0340830-mRNA-1:exon:19740;Parent=Msa0340830-mRNA-1
chr2_4 exon 62244645 62244690 62244645 ID=Msa0340830-mRNA-1:exon:19741;Parent=Msa0340830-mRNA-1
chr2_4 exon 62244783 62245046 62244783 ID=Msa0340830-mRNA-1:exon:19742;Parent=Msa0340830-mRNA-1
chr2_4 five_prime_UTR 62239357 62239543 62239357 ID=Msa0340830-mRNA-1:five_prime_utr;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62239544 62239559 62239544 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62240556 62240744 62240556 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62243503 62243582 62243503 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62243752 62243811 62243752 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62243946 62244182 62243946 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62244247 62244309 62244247 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62244454 62244522 62244454 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62244645 62244690 62244645 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 CDS 62244783 62244856 62244783 ID=Msa0340830-mRNA-1:cds;Parent=Msa0340830-mRNA-1
chr2_4 three_prime_UTR 62244857 62245046 62244857 ID=Msa0340830-mRNA-1:three_prime_utr;Parent=Msa0340830-mRNA-1
Gene Sequence

>Msa0340830

ATGGCTTCATCTCACTGTAGCTTAGGGACACAAAATGTCAAAGTATTGAACTTGCACTTTGGTCAAGAAAGAGTTGAGCTTTCACAACATTTTGGTACTAGAAGTTGGATCAGTAGGAAGTCACTGCAGTACACTAGATTGGTTGCGTCAAGACAGACAGTTAGATCTTTAACCCCATCTAATGACCAATCAGCAGAGATCCAATCTGTTTCAAGGTCAGAAGGTGGTTCTGAAGAGATTAAATCTTCTGGTTTGACAAGTGAACTGTTTCCCAATTTTAATGATGTGGAATTCTTGGTCACTAACTTATGTGAGACGGCATCAATTGGAGAGCTAGAATTAAAACTTGATGGATTTCACCTGCGTGTAGTGAGGGATTTGACTGAAAAATCTAAAACACTTCCTCCTTCAATTCCTGCTCCTGTAAGTATAAATACACCCGCAGAAGCACCTAAACCAAATGGATCAGTTTCTACATTGACAACATTGGCCATCTCGAAACCAGTACCTTCTTCATTGTCTATCGAGGGATTCCTAGAAAAAGCTGCAGATGAAGGGTTGGTGATAATTCATTCTCCAACGGTTGGCATCTTCAGAAGATCTCGGACGATAAAGGGAAAACGTGCTCCTCCTTCATGTAATGAGATGCAAAAAGTTGAGGACGGGAAAGTGATTTGTTACATTGAACAGCTTGGTGGGCAGCTACCAGTTGAGTCTGACGTGTCCGGGGAGGTCATCAAGATTCTAAGAGAGGATGGCGATCCAGTTGGTTATGGTGATGCACTTATAGCAATATTGCCGTCATTTCCCGGAATAAAGAAGCTTCAATATTGA

Protein sequence

>Msa0340830

MASSHCSLGTQNVKVLNLHFGQERVELSQHFGTRSWISRKSLQYTRLVASRQTVRSLTPSNDQSAEIQSVSRSEGGSEEIKSSGLTSELFPNFNDVEFLVTNLCETASIGELELKLDGFHLRVVRDLTEKSKTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPVPSSLSIEGFLEKAADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCNEMQKVEDGKVICYIEQLGGQLPVESDVSGEVIKILREDGDPVGYGDALIAILPSFPGIKKLQY*