AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004300 MtrunA17_Chr7g0214751 97.083 240 7 0 1 240 1 240 1.81e-173 476
Msa1004300 MtrunA17_Chr8g0335211 30.872 149 70 5 90 237 87 203 1.69e-12 64.7
Msa1004300 MtrunA17_Chr1g0179231 31.915 141 83 3 102 235 79 213 2.30e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004300 AT5G13410.1 73.934 211 51 1 34 240 46 256 7.65e-113 324
Msa1004300 AT5G13410.2 67.722 158 47 1 34 187 46 203 6.49e-72 219
Msa1004300 AT5G13410.3 65.493 142 43 2 34 169 46 187 1.63e-58 184
Msa1004300 AT4G19830.1 32.667 150 80 4 97 235 83 222 3.52e-13 67.0
Msa1004300 AT3G60370.1 29.371 143 69 4 95 237 114 224 7.60e-12 63.5
Msa1004300 AT3G60370.2 29.371 143 69 4 95 237 143 253 9.31e-12 63.5

Find 76 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 7_1:-1784888 None:intergenic
AATTAGAACACGTATTTATT+TGG 0.192325 7_1:-1782865 None:intergenic
AAGAATTTGACAAATCAATT+TGG 0.211014 7_1:-1786821 None:intergenic
ACTACTGTCTCTCCTTTCTT+TGG 0.267395 7_1:-1784894 None:intergenic
AGTACCAGAGATTGAGAATT+AGG 0.273833 7_1:-1783028 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.292503 7_1:+1783415 Msa1004300:CDS
GATTCGGTTTCTATGTAGTC+TGG 0.299781 7_1:-1784747 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 7_1:-1786633 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 7_1:+1786087 Msa1004300:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 7_1:+1785225 Msa1004300:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 7_1:-1786866 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 7_1:+1785199 Msa1004300:intron
CGAATCTGGACTCCAGTATA+AGG 0.349702 7_1:+1784764 Msa1004300:CDS
GCGCTTAGAGGGAAGGATTA+TGG 0.359617 7_1:+1784705 Msa1004300:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 7_1:-1783139 None:intergenic
CATACAGTGCCTGCGCTTAG+AGG 0.369660 7_1:+1784693 Msa1004300:intron
CCTGAGAGTGATTATAATAA+AGG 0.373753 7_1:+1786606 Msa1004300:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 7_1:-1786591 None:intergenic
GACTACATAGAAACCGAATC+TGG 0.408710 7_1:+1784750 Msa1004300:CDS
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 7_1:+1786086 Msa1004300:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 7_1:+1784864 Msa1004300:intron
CGTGCTGCATCACCTTATAC+TGG 0.421611 7_1:-1784776 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 7_1:+1785200 Msa1004300:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 7_1:-1786632 None:intergenic
TCTACCTAATTCTCAATCTC+TGG 0.425695 7_1:+1783024 Msa1004300:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7_1:+1783148 Msa1004300:CDS
ATCAAAATTGTCGCATAGGC+AGG 0.436623 7_1:-1787309 None:intergenic
ATATCACCACCAAAACATTC+AGG 0.437986 7_1:+1786857 Msa1004300:three_prime_UTR
ACCAATTCCTCCTTTACAAA+AGG 0.440336 7_1:-1783440 None:intergenic
ACTCTTACCGAGAATGTTGT+AGG 0.441297 7_1:-1786639 None:intergenic
GAAGGATCAATCAATGATAC+TGG 0.446572 7_1:-1787030 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 7_1:-1784763 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 7_1:+1786632 Msa1004300:CDS
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7_1:-1783002 None:intergenic
TTTACAGGGCCAACGAGCCT+TGG 0.477434 7_1:+1786727 Msa1004300:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7_1:-1783008 None:intergenic
TTTCTGGTTATGTTCTCCAT+AGG 0.483197 7_1:+1787068 Msa1004300:three_prime_UTR
CCTTTATTATAATCACTCTC+AGG 0.484019 7_1:-1786606 None:intergenic
AAAATACTCACAAGGTATGA+AGG 0.485375 7_1:-1787048 None:intergenic
GTACTGTACTTTGTGTTGTG+TGG 0.489766 7_1:-1782950 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 7_1:+1783387 Msa1004300:CDS
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7_1:+1782967 Msa1004300:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 7_1:+1785272 Msa1004300:CDS
ATAATTGTACCACCAGAACT+TGG 0.512580 7_1:+1786579 Msa1004300:CDS
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 7_1:-1782945 None:intergenic
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 7_1:-1783152 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 7_1:+1786088 Msa1004300:CDS
GCAACAGCCTCTTCAAAAGC+TGG 0.532405 7_1:-1786071 None:intergenic
ATTCGGTTTCTATGTAGTCT+GGG 0.535406 7_1:-1784746 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 7_1:+1785258 Msa1004300:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 7_1:-1785232 None:intergenic
TTACATCAAAATTGTCGCAT+AGG 0.547571 7_1:-1787313 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 7_1:+1784858 Msa1004300:intron
GAGTCTTGTCTATCAACCCT+TGG 0.550697 7_1:-1786766 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 7_1:+1785244 Msa1004300:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 7_1:+1784882 Msa1004300:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 7_1:+1785216 Msa1004300:CDS
ATACAGTGCCTGCGCTTAGA+GGG 0.556567 7_1:+1784694 Msa1004300:intron
GTTCCTTAGCACAAAATCCA+AGG 0.568528 7_1:-1786744 None:intergenic
TAATCCTTCCCTCTAAGCGC+AGG 0.569928 7_1:-1784702 None:intergenic
AGTGCCTGCGCTTAGAGGGA+AGG 0.581188 7_1:+1784698 Msa1004300:intron
TTTCTCCGTTCAAACGACGT+TGG 0.585440 7_1:-1783382 None:intergenic
TCCATTCAGGTAGATTGGGA+TGG 0.591083 7_1:+1785204 Msa1004300:intron
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7_1:+1783346 Msa1004300:intron
GCACAAAATCCAAGGCTCGT+TGG 0.605057 7_1:-1786736 None:intergenic
AAATATGCAGGGTGATGACA+AGG 0.621012 7_1:+1785378 Msa1004300:intron
GGTACCAGCAATGACAGCAA+TGG 0.625239 7_1:-1783419 None:intergenic
GAGAGTGATTATAATAAAGG+TGG 0.627466 7_1:+1786609 Msa1004300:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 7_1:-1786588 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 7_1:-1785286 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 7_1:+1785261 Msa1004300:CDS
TCAATAACTACATACAGATG+AGG 0.653463 7_1:+1787214 Msa1004300:three_prime_UTR
AAAGAAAGGAGAGACAGTAG+TGG 0.673908 7_1:+1784896 Msa1004300:CDS
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 7_1:+1786089 Msa1004300:CDS
ATAACCAGAAAATACTCACA+AGG 0.721530 7_1:-1787056 None:intergenic
ATTCAAAGTAGGATCGCACG+AGG 0.729797 7_1:+1785411 Msa1004300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCTTAAAAAATTTAATA+TGG + chr7_1:1786459-1786478 Msa1004300:intron 10.0%
!! AAGCTATTATTAATTGAAAT+TGG - chr7_1:1784385-1784404 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG - chr7_1:1785362-1785381 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG + chr7_1:1785639-1785658 Msa1004300:intron 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG + chr7_1:1785640-1785659 Msa1004300:intron 15.0%
!! AAATTATAAGTGATATAACA+TGG + chr7_1:1785760-1785779 Msa1004300:intron 15.0%
!! CAGTATAATAAAATAAATTC+AGG - chr7_1:1786258-1786277 None:intergenic 15.0%
!!! CAACCATATTAAATTTTTTA+AGG - chr7_1:1786465-1786484 None:intergenic 15.0%
!! AATTAGAACACGTATTTATT+TGG - chr7_1:1782868-1782887 None:intergenic 20.0%
!! TAGTTAAGTTAAGTTAAGTT+TGG - chr7_1:1783100-1783119 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG + chr7_1:1783114-1783133 Msa1004300:intron 20.0%
!! AATCAACTTAACTTATGTAT+AGG + chr7_1:1783565-1783584 Msa1004300:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG + chr7_1:1783643-1783662 Msa1004300:intron 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG + chr7_1:1783901-1783920 Msa1004300:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG - chr7_1:1783930-1783949 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG - chr7_1:1784065-1784084 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG - chr7_1:1784088-1784107 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG - chr7_1:1784089-1784108 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG - chr7_1:1784415-1784434 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG - chr7_1:1784416-1784435 None:intergenic 20.0%
!!! GTATTTGTTTTATCATAAAC+TGG + chr7_1:1784585-1784604 Msa1004300:intron 20.0%
!! CATTATATTGAAATCTTTGT+AGG - chr7_1:1784656-1784675 None:intergenic 20.0%
!! TAGTAGTATTAATAAATTGC+AGG + chr7_1:1784845-1784864 Msa1004300:intron 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG + chr7_1:1784940-1784959 Msa1004300:intron 20.0%
!! TTATAATTTCGTTATAGAAC+AGG - chr7_1:1785749-1785768 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG + chr7_1:1786286-1786305 Msa1004300:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG + chr7_1:1786287-1786306 Msa1004300:intron 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG - chr7_1:1786328-1786347 None:intergenic 20.0%
!!! AATTTTAATTACGGAAATTC+AGG - chr7_1:1786329-1786348 None:intergenic 20.0%
!!! GCAATTGACAATTTTAATTA+CGG - chr7_1:1786338-1786357 None:intergenic 20.0%
!! TAATTAAAATTGTCAATTGC+TGG + chr7_1:1786338-1786357 Msa1004300:intron 20.0%
!! AATTAAAATTGTCAATTGCT+GGG + chr7_1:1786339-1786358 Msa1004300:intron 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG + chr7_1:1786472-1786491 Msa1004300:intron 20.0%
!! AAGAATTTGACAAATCAATT+TGG - chr7_1:1786824-1786843 None:intergenic 20.0%
!!! ACAATTTTGATGTAATATTC+CGG + chr7_1:1787321-1787340 Msa1004300:three_prime_UTR 20.0%
! ATTTCATTAATGTCGAGTTT+GGG - chr7_1:1783225-1783244 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG - chr7_1:1783276-1783295 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG + chr7_1:1783325-1783344 Msa1004300:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG + chr7_1:1783642-1783661 Msa1004300:intron 25.0%
! ACTTATTTGAGCTTATGTAT+TGG + chr7_1:1783805-1783824 Msa1004300:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG + chr7_1:1783900-1783919 Msa1004300:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr7_1:1784038-1784057 Msa1004300:intron 25.0%
! TCCATTATACTAAACAATGT+AGG + chr7_1:1784156-1784175 Msa1004300:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG - chr7_1:1784160-1784179 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG - chr7_1:1784414-1784433 None:intergenic 25.0%
!!! CTTTTTCTTATTTTACTACG+TGG - chr7_1:1784630-1784649 None:intergenic 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG + chr7_1:1785087-1785106 Msa1004300:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG + chr7_1:1785088-1785107 Msa1004300:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG + chr7_1:1785366-1785385 Msa1004300:intron 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG + chr7_1:1785367-1785386 Msa1004300:intron 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG + chr7_1:1785400-1785419 Msa1004300:CDS 25.0%
! ATATTAATCATTACATGACG+AGG - chr7_1:1785444-1785463 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG + chr7_1:1785462-1785481 Msa1004300:intron 25.0%
! AAAGATCCTATTGAAATTGA+AGG - chr7_1:1785471-1785490 None:intergenic 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG + chr7_1:1785476-1785495 Msa1004300:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG - chr7_1:1785670-1785689 None:intergenic 25.0%
! TATATAAAACTGAACCACAA+AGG - chr7_1:1785671-1785690 None:intergenic 25.0%
! TATTAGTTCACTAAACTTGT+TGG + chr7_1:1785943-1785962 Msa1004300:intron 25.0%
!! ATTAGTTCACTAAACTTGTT+GGG + chr7_1:1785944-1785963 Msa1004300:intron 25.0%
! AATTTGAGTGCTTAATATGT+TGG - chr7_1:1785975-1785994 None:intergenic 25.0%
! AGAAACTGTAATTCAGTAAA+TGG - chr7_1:1786197-1786216 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG + chr7_1:1786211-1786230 Msa1004300:intron 25.0%
! ATCAATTCAAACTTTGGATT+TGG + chr7_1:1786217-1786236 Msa1004300:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG + chr7_1:1786218-1786237 Msa1004300:intron 25.0%
! AGAGTAAGAATTTATAGAAG+TGG - chr7_1:1786281-1786300 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG + chr7_1:1786288-1786307 Msa1004300:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG + chr7_1:1786514-1786533 Msa1004300:intron 25.0%
! GAATTAATTGTAGACTTATC+TGG - chr7_1:1787000-1787019 None:intergenic 25.0%
!! ATTTCTTTTGATCACTTTGT+TGG + chr7_1:1787271-1787290 Msa1004300:three_prime_UTR 25.0%
! ATAAACGAACAATGAAAAAC+CGG - chr7_1:1787343-1787362 None:intergenic 25.0%
!! TTTTTCATTGTTCGTTTATC+TGG + chr7_1:1787344-1787363 Msa1004300:three_prime_UTR 25.0%
AATGAAAGAAGAATACTGAC+CGG - chr7_1:1783170-1783189 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG - chr7_1:1783226-1783245 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG - chr7_1:1783338-1783357 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG + chr7_1:1783337-1783356 Msa1004300:intron 30.0%
TCAAATAAGCCAAATCAAAG+AGG + chr7_1:1783767-1783786 Msa1004300:intron 30.0%
AACATCAACAACCGAAAATT+TGG + chr7_1:1784252-1784271 Msa1004300:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG + chr7_1:1784345-1784364 Msa1004300:intron 30.0%
ATATTAAGAAGTTCCGAAGA+AGG + chr7_1:1784434-1784453 Msa1004300:intron 30.0%
AGAGCGCAAAAGAAAAATTT+AGG - chr7_1:1785041-1785060 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG + chr7_1:1785115-1785134 Msa1004300:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG - chr7_1:1785134-1785153 None:intergenic 30.0%
! TTTTCTATAGGTCTTGATGT+CGG + chr7_1:1785488-1785507 Msa1004300:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG + chr7_1:1785568-1785587 Msa1004300:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG + chr7_1:1785775-1785794 Msa1004300:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG + chr7_1:1785989-1786008 Msa1004300:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG - chr7_1:1786188-1786207 None:intergenic 30.0%
AAGTAAGGCAAATGTATGTT+TGG + chr7_1:1786487-1786506 Msa1004300:intron 30.0%
AGTAAGGCAAATGTATGTTT+GGG + chr7_1:1786488-1786507 Msa1004300:intron 30.0%
CCTTTATTATAATCACTCTC+AGG - chr7_1:1786609-1786628 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG + chr7_1:1786606-1786625 Msa1004300:CDS 30.0%
GAGAGTGATTATAATAAAGG+TGG + chr7_1:1786609-1786628 Msa1004300:CDS 30.0%
! CAATGCGAATATGTTTTACA+GGG + chr7_1:1786713-1786732 Msa1004300:intron 30.0%
! AGAAACTAACCTGAATGTTT+TGG - chr7_1:1786869-1786888 None:intergenic 30.0%
AAAATACTCACAAGGTATGA+AGG - chr7_1:1787051-1787070 None:intergenic 30.0%
ATAACCAGAAAATACTCACA+AGG - chr7_1:1787059-1787078 None:intergenic 30.0%
! TCATGATTTTTCATCACCTA+TGG - chr7_1:1787087-1787106 None:intergenic 30.0%
TCAATAACTACATACAGATG+AGG + chr7_1:1787214-1787233 Msa1004300:three_prime_UTR 30.0%
TTACATCAAAATTGTCGCAT+AGG - chr7_1:1787316-1787335 None:intergenic 30.0%
! AACATTTTGTGTGACATTTG+AGG + chr7_1:1787374-1787393 Msa1004300:three_prime_UTR 30.0%
! TGGAAGTTGCTAGATTTTGA+AGG - chr7_1:1782928-1782947 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG + chr7_1:1782967-1782986 Msa1004300:exon 35.0%
AGAAAGAGAAGCAATGGAAA+AGG - chr7_1:1783005-1783024 None:intergenic 35.0%
TCTACCTAATTCTCAATCTC+TGG + chr7_1:1783024-1783043 Msa1004300:CDS 35.0%
AGTACCAGAGATTGAGAATT+AGG - chr7_1:1783031-1783050 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG - chr7_1:1783074-1783093 None:intergenic 35.0%
! ATTGCTGGTACCTTTTGTAA+AGG + chr7_1:1783430-1783449 Msa1004300:CDS 35.0%
! ACCTTTTGTAAAGGAGGAAT+TGG + chr7_1:1783439-1783458 Msa1004300:CDS 35.0%
ACCAATTCCTCCTTTACAAA+AGG - chr7_1:1783443-1783462 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG + chr7_1:1783723-1783742 Msa1004300:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG - chr7_1:1783779-1783798 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG + chr7_1:1783778-1783797 Msa1004300:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG + chr7_1:1783829-1783848 Msa1004300:intron 35.0%
AACAATATCATGGTCCTGTT+TGG - chr7_1:1784055-1784074 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG - chr7_1:1784266-1784285 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG + chr7_1:1784286-1784305 Msa1004300:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG + chr7_1:1784321-1784340 Msa1004300:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG + chr7_1:1784322-1784341 Msa1004300:intron 35.0%
TATTTGAACTATGTCCCATG+AGG - chr7_1:1784339-1784358 None:intergenic 35.0%
AGTTCAAATAACCCAAAGGA+AGG + chr7_1:1784349-1784368 Msa1004300:intron 35.0%
!! GTCATTTTACACCTTCCTTT+GGG - chr7_1:1784363-1784382 None:intergenic 35.0%
ATTCGGTTTCTATGTAGTCT+GGG - chr7_1:1784749-1784768 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG - chr7_1:1784890-1784909 None:intergenic 35.0%
ATCTACATAGCAGACATTCT+AGG + chr7_1:1785064-1785083 Msa1004300:intron 35.0%
GATTTGACAACTTTACTCCT+AGG + chr7_1:1785114-1785133 Msa1004300:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG + chr7_1:1785200-1785219 Msa1004300:intron 35.0%
TATGCGACCATAATAACCTA+TGG - chr7_1:1785235-1785254 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG - chr7_1:1785266-1785285 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG - chr7_1:1785289-1785308 None:intergenic 35.0%
CTACTGCATTCAACATTACT+TGG - chr7_1:1785569-1785588 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG + chr7_1:1785567-1785586 Msa1004300:intron 35.0%
GAATAAGGATAAGTCCTACT+TGG + chr7_1:1785593-1785612 Msa1004300:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG + chr7_1:1785603-1785622 Msa1004300:intron 35.0%
GAATCCTAGTATAACCAAGT+AGG - chr7_1:1785610-1785629 None:intergenic 35.0%
! TATTAAGCATGTGCTACTGT+TGG + chr7_1:1785694-1785713 Msa1004300:intron 35.0%
AGTTTAGTCCTAATCCCAAA+GGG - chr7_1:1785819-1785838 None:intergenic 35.0%
ATGCAGACTCCAGAAAATAA+GGG - chr7_1:1786001-1786020 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG + chr7_1:1786043-1786062 Msa1004300:intron 35.0%
ATATAGCTAACTTCACCTAG+CGG - chr7_1:1786419-1786438 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG + chr7_1:1786556-1786575 Msa1004300:intron 35.0%
ATAATTGTACCACCAGAACT+TGG + chr7_1:1786579-1786598 Msa1004300:CDS 35.0%
! GCAATGCGAATATGTTTTAC+AGG + chr7_1:1786712-1786731 Msa1004300:intron 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG + chr7_1:1786750-1786769 Msa1004300:CDS 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG - chr7_1:1786853-1786872 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG - chr7_1:1786854-1786873 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG + chr7_1:1786857-1786876 Msa1004300:three_prime_UTR 35.0%
!! AACTAACCTGAATGTTTTGG+TGG - chr7_1:1786866-1786885 None:intergenic 35.0%
!!! GTTTTTTTCCATCAGTTCAC+TGG - chr7_1:1786967-1786986 None:intergenic 35.0%
AGACTTATCTGGCAATACAA+AGG - chr7_1:1786989-1787008 None:intergenic 35.0%
GAAGGATCAATCAATGATAC+TGG - chr7_1:1787033-1787052 None:intergenic 35.0%
! CATACCTTGTGAGTATTTTC+TGG + chr7_1:1787052-1787071 Msa1004300:three_prime_UTR 35.0%
!! TTTCTGGTTATGTTCTCCAT+AGG + chr7_1:1787068-1787087 Msa1004300:three_prime_UTR 35.0%
GTACTTTGTGTTGTGTGGAA+TGG - chr7_1:1782948-1782967 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG - chr7_1:1782953-1782972 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG - chr7_1:1783011-1783030 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG - chr7_1:1783142-1783161 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG + chr7_1:1783377-1783396 Msa1004300:CDS 40.0%
TTGGCATAAGCACTTTGCAA+TGG + chr7_1:1783824-1783843 Msa1004300:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG + chr7_1:1783841-1783860 Msa1004300:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG + chr7_1:1784196-1784215 Msa1004300:intron 40.0%
AGAGTGAAGCTGGACAATAA+TGG + chr7_1:1784206-1784225 Msa1004300:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG + chr7_1:1784260-1784279 Msa1004300:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG + chr7_1:1784280-1784299 Msa1004300:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG - chr7_1:1784364-1784383 None:intergenic 40.0%
! CCTTGTTTGTGTGTCTGAAA+CGG + chr7_1:1784476-1784495 Msa1004300:intron 40.0%
! TTTGTGTGTCTGAAACGGAA+AGG + chr7_1:1784481-1784500 Msa1004300:intron 40.0%
! CGTTACTGATGGTGAAAAGT+AGG + chr7_1:1784553-1784572 Msa1004300:intron 40.0%
! GATTCGGTTTCTATGTAGTC+TGG - chr7_1:1784750-1784769 None:intergenic 40.0%
GACTACATAGAAACCGAATC+TGG + chr7_1:1784750-1784769 Msa1004300:CDS 40.0%
CTTATACTGGAGTCCAGATT+CGG - chr7_1:1784766-1784785 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG + chr7_1:1784882-1784901 Msa1004300:CDS 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG - chr7_1:1784891-1784910 None:intergenic 40.0%
ACTACTGTCTCTCCTTTCTT+TGG - chr7_1:1784897-1784916 None:intergenic 40.0%
AAAGAAAGGAGAGACAGTAG+TGG + chr7_1:1784896-1784915 Msa1004300:CDS 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG + chr7_1:1785191-1785210 Msa1004300:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG + chr7_1:1785199-1785218 Msa1004300:intron 40.0%
GGCTACACCATAGGTTATTA+TGG + chr7_1:1785225-1785244 Msa1004300:CDS 40.0%
GAAGCCCGGAATAAAACAAA+AGG + chr7_1:1785258-1785277 Msa1004300:CDS 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG - chr7_1:1785265-1785284 None:intergenic 40.0%
CTATCTAGACATTGTCGAAG+TGG + chr7_1:1785322-1785341 Msa1004300:intron 40.0%
AAATATGCAGGGTGATGACA+AGG + chr7_1:1785378-1785397 Msa1004300:intron 40.0%
GAATGCAGTAGGGTTGAATA+AGG + chr7_1:1785578-1785597 Msa1004300:intron 40.0%
TCGACATCCTTCGTTAGTAT+TGG + chr7_1:1785717-1785736 Msa1004300:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG + chr7_1:1785721-1785740 Msa1004300:intron 40.0%
GAGTTTAGTCCTAATCCCAA+AGG - chr7_1:1785820-1785839 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG - chr7_1:1786002-1786021 None:intergenic 40.0%
!! GGTAATACCAGCTTTTGAAG+AGG + chr7_1:1786064-1786083 Msa1004300:intron 40.0%
GTAAATGGCATGAAAGGACT+TGG - chr7_1:1786182-1786201 None:intergenic 40.0%
! TATGAAACCCTTTTTCCGCT+AGG + chr7_1:1786401-1786420 Msa1004300:intron 40.0%
AACTTCACCTAGCGGAAAAA+GGG - chr7_1:1786411-1786430 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG - chr7_1:1786412-1786431 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG + chr7_1:1786418-1786437 Msa1004300:intron 40.0%
ACTCTTACCGAGAATGTTGT+AGG - chr7_1:1786642-1786661 None:intergenic 40.0%
!! AGTTGATGAACACTAGTGAC+AGG - chr7_1:1786670-1786689 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG - chr7_1:1786747-1786766 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG + chr7_1:1786749-1786768 Msa1004300:CDS 40.0%
ATCAAAATTGTCGCATAGGC+AGG - chr7_1:1787312-1787331 None:intergenic 40.0%
CTCTCCGATTCTTCTTTCTC+CGG + chr7_1:1783148-1783167 Msa1004300:CDS 45.0%
CTGACCGGAGAAAGAAGAAT+CGG - chr7_1:1783155-1783174 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG + chr7_1:1783346-1783365 Msa1004300:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG - chr7_1:1783385-1783404 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG + chr7_1:1783387-1783406 Msa1004300:CDS 45.0%
TCTTCCATTGCTGTCATTGC+TGG + chr7_1:1783415-1783434 Msa1004300:CDS 45.0%
! GCTGGTACCTTTTGTAAAGG+AGG + chr7_1:1783433-1783452 Msa1004300:CDS 45.0%
AGAAGTTCCGAAGAAGGTCA+TGG + chr7_1:1784440-1784459 Msa1004300:intron 45.0%
AAACCGACCATGACCTTCTT+CGG - chr7_1:1784450-1784469 None:intergenic 45.0%
CCGTTTCAGACACACAAACA+AGG - chr7_1:1784479-1784498 None:intergenic 45.0%
TGAAACGGAAAGGAGGAGAA+TGG + chr7_1:1784491-1784510 Msa1004300:intron 45.0%
! TGCAGTTGTGTCGTTACTGA+TGG + chr7_1:1784542-1784561 Msa1004300:intron 45.0%
CGAATCTGGACTCCAGTATA+AGG + chr7_1:1784764-1784783 Msa1004300:CDS 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG - chr7_1:1784879-1784898 None:intergenic 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG - chr7_1:1784880-1784899 None:intergenic 45.0%
TCCATTCAGGTAGATTGGGA+TGG + chr7_1:1785204-1785223 Msa1004300:intron 45.0%
! ATGGTCGCATATTTGAAGCC+CGG + chr7_1:1785244-1785263 Msa1004300:CDS 45.0%
GCCCGGAATAAAACAAAAGG+CGG + chr7_1:1785261-1785280 Msa1004300:CDS 45.0%
ATTCAAAGTAGGATCGCACG+AGG + chr7_1:1785411-1785430 Msa1004300:CDS 45.0%
TCTAGAGGGAAAACCCTTTG+TGG + chr7_1:1785654-1785673 Msa1004300:intron 45.0%
GAGCCAACCAATACTAACGA+AGG - chr7_1:1785727-1785746 None:intergenic 45.0%
CGATAACACCTTGTGGCAAA+GGG - chr7_1:1785869-1785888 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+AGG - chr7_1:1785870-1785889 None:intergenic 45.0%
! TTTGCCACAAGGTGTTATCG+TGG + chr7_1:1785869-1785888 Msa1004300:intron 45.0%
! TTGCCACAAGGTGTTATCGT+GGG + chr7_1:1785870-1785889 Msa1004300:intron 45.0%
AAACCCACGATAACACCTTG+TGG - chr7_1:1785876-1785895 None:intergenic 45.0%
! TCAGGATATCCAAGTTCTGG+TGG - chr7_1:1786591-1786610 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG - chr7_1:1786594-1786613 None:intergenic 45.0%
CCGAGAATGTTGTAGGTCTT+GGG - chr7_1:1786635-1786654 None:intergenic 45.0%
CCCAAGACCTACAACATTCT+CGG + chr7_1:1786632-1786651 Msa1004300:CDS 45.0%
ACCGAGAATGTTGTAGGTCT+TGG - chr7_1:1786636-1786655 None:intergenic 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG + chr7_1:1786741-1786760 Msa1004300:CDS 45.0%
! GAGTCTTGTCTATCAACCCT+TGG - chr7_1:1786769-1786788 None:intergenic 45.0%
GTCTTGCTCTGACATGGATT+CGG - chr7_1:1786942-1786961 None:intergenic 45.0%
CAAGACTACCAGTGAACTGA+TGG + chr7_1:1786956-1786975 Msa1004300:intron 45.0%
GGTACCAGCAATGACAGCAA+TGG - chr7_1:1783422-1783441 None:intergenic 50.0%
GTTCCGAAGAAGGTCATGGT+CGG + chr7_1:1784444-1784463 Msa1004300:intron 50.0%
! GTGTGTCTGAAACGGAAAGG+AGG + chr7_1:1784484-1784503 Msa1004300:intron 50.0%
ATACAGTGCCTGCGCTTAGA+GGG + chr7_1:1784694-1784713 Msa1004300:intron 50.0%
TAATCCTTCCCTCTAAGCGC+AGG - chr7_1:1784705-1784724 None:intergenic 50.0%
GCGCTTAGAGGGAAGGATTA+TGG + chr7_1:1784705-1784724 Msa1004300:CDS 50.0%
CGTGCTGCATCACCTTATAC+TGG - chr7_1:1784779-1784798 None:intergenic 50.0%
AAATTGCAGGACTTGCGACC+CGG + chr7_1:1784858-1784877 Msa1004300:intron 50.0%
GCCATCCCAATCTACCTGAA+TGG - chr7_1:1785208-1785227 None:intergenic 50.0%
GATTGGGATGGCTACACCAT+AGG + chr7_1:1785216-1785235 Msa1004300:CDS 50.0%
AACAAAAGGCGGTTCCTTCG+AGG + chr7_1:1785272-1785291 Msa1004300:CDS 50.0%
TGAAGAGTCTGAACGCCCTT+TGG + chr7_1:1785801-1785820 Msa1004300:intron 50.0%
GAAGAGTCTGAACGCCCTTT+GGG + chr7_1:1785802-1785821 Msa1004300:intron 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG + chr7_1:1785808-1785827 Msa1004300:intron 50.0%
CGACTTTACCCTTTGCCACA+AGG + chr7_1:1785858-1785877 Msa1004300:intron 50.0%
GCAACAGCCTCTTCAAAAGC+TGG - chr7_1:1786074-1786093 None:intergenic 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG + chr7_1:1786074-1786093 Msa1004300:CDS 50.0%
ACTTGGACGTAACACAGCTC+AGG - chr7_1:1786165-1786184 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG - chr7_1:1786739-1786758 None:intergenic 50.0%
! CTGGTAGTCTTGCTCTGACA+TGG - chr7_1:1786948-1786967 None:intergenic 50.0%
CATACAGTGCCTGCGCTTAG+AGG + chr7_1:1784693-1784712 Msa1004300:intron 55.0%
GCTGTTGCAGGCATGTCTCT+CGG + chr7_1:1786086-1786105 Msa1004300:CDS 55.0%
CTGTTGCAGGCATGTCTCTC+GGG + chr7_1:1786087-1786106 Msa1004300:CDS 55.0%
TGTTGCAGGCATGTCTCTCG+GGG + chr7_1:1786088-1786107 Msa1004300:CDS 55.0%
TTTACAGGGCCAACGAGCCT+TGG + chr7_1:1786727-1786746 Msa1004300:intron 55.0%
AGTGCCTGCGCTTAGAGGGA+AGG + chr7_1:1784698-1784717 Msa1004300:intron 60.0%
CAGGACTTGCGACCCGGAAA+TGG + chr7_1:1784864-1784883 Msa1004300:intron 60.0%
GTTGCAGGCATGTCTCTCGG+GGG + chr7_1:1786089-1786108 Msa1004300:CDS 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG + chr7_1:1786099-1786118 Msa1004300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 1782864 1787404 1782864 ID=Msa1004300;Name=Msa1004300
chr7_1 mRNA 1782864 1787404 1782864 ID=Msa1004300-mRNA-1;Parent=Msa1004300;Name=Msa1004300-mRNA-1;_AED=0.32;_eAED=0.32;_QI=122|1|1|1|0.9|0.81|11|453|240
chr7_1 exon 1782864 1783045 1782864 ID=Msa1004300-mRNA-1:exon:680;Parent=Msa1004300-mRNA-1
chr7_1 exon 1783136 1783169 1783136 ID=Msa1004300-mRNA-1:exon:681;Parent=Msa1004300-mRNA-1
chr7_1 exon 1783347 1783484 1783347 ID=Msa1004300-mRNA-1:exon:682;Parent=Msa1004300-mRNA-1
chr7_1 exon 1784700 1784785 1784700 ID=Msa1004300-mRNA-1:exon:683;Parent=Msa1004300-mRNA-1
chr7_1 exon 1784867 1784917 1784867 ID=Msa1004300-mRNA-1:exon:684;Parent=Msa1004300-mRNA-1
chr7_1 exon 1785213 1785293 1785213 ID=Msa1004300-mRNA-1:exon:685;Parent=Msa1004300-mRNA-1
chr7_1 exon 1785388 1785432 1785388 ID=Msa1004300-mRNA-1:exon:686;Parent=Msa1004300-mRNA-1
chr7_1 exon 1786065 1786120 1786065 ID=Msa1004300-mRNA-1:exon:687;Parent=Msa1004300-mRNA-1
chr7_1 exon 1786578 1786653 1786578 ID=Msa1004300-mRNA-1:exon:688;Parent=Msa1004300-mRNA-1
chr7_1 exon 1786734 1786878 1786734 ID=Msa1004300-mRNA-1:exon:689;Parent=Msa1004300-mRNA-1
chr7_1 exon 1787001 1787404 1787001 ID=Msa1004300-mRNA-1:exon:690;Parent=Msa1004300-mRNA-1
chr7_1 five_prime_UTR 1782864 1782985 1782864 ID=Msa1004300-mRNA-1:five_prime_utr;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1782986 1783045 1782986 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1783136 1783169 1783136 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1783347 1783484 1783347 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1784700 1784785 1784700 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1784867 1784917 1784867 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1785213 1785293 1785213 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1785388 1785432 1785388 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1786065 1786120 1786065 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1786578 1786653 1786578 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 CDS 1786734 1786829 1786734 ID=Msa1004300-mRNA-1:cds;Parent=Msa1004300-mRNA-1
chr7_1 three_prime_UTR 1786830 1786878 1786830 ID=Msa1004300-mRNA-1:three_prime_utr;Parent=Msa1004300-mRNA-1
chr7_1 three_prime_UTR 1787001 1787404 1787001 ID=Msa1004300-mRNA-1:three_prime_utr;Parent=Msa1004300-mRNA-1
Gene Sequence

>Msa1004300

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAATTCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGTACCTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTAGAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACATAGAAACCGAATCTGGACTCCAGTATAAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGACAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCAGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATTGA

Protein sequence

>Msa1004300

MASLLSFSIASLSLPNSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADMPALRGKDYGKSKMKYPDYIETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPN*