AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134420 MtrunA17_Chr7g0214751 96.250 240 9 0 1 240 1 240 5.78e-172 473
Msa1134420 MtrunA17_Chr8g0335211 30.872 149 70 5 90 237 87 203 1.61e-12 64.7
Msa1134420 MtrunA17_Chr1g0179231 31.915 141 83 3 102 235 79 213 2.23e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134420 AT5G13410.1 73.934 211 51 1 34 240 46 256 1.01e-112 324
Msa1134420 AT5G13410.2 67.722 158 47 1 34 187 46 203 8.16e-72 219
Msa1134420 AT5G13410.3 62.252 151 51 2 34 178 46 196 1.88e-58 184
Msa1134420 AT4G19830.1 32.667 150 80 4 97 235 83 222 2.80e-13 67.4
Msa1134420 AT3G60370.1 29.371 143 69 4 95 237 114 224 7.02e-12 63.5
Msa1134420 AT3G60370.2 29.371 143 69 4 95 237 143 253 9.13e-12 63.5

Find 77 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 7_4:-895060 None:intergenic
AAGAATTTGACAAATCAATT+TGG 0.211014 7_4:-896992 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 7_4:+893553 Msa1134420:CDS
ACTACTGTCTCTCCTTTCTT+TGG 0.267395 7_4:-895066 None:intergenic
AGTACCAGAGATTGAGAATT+AGG 0.273833 7_4:-893186 None:intergenic
GATTCGGTTTCTATGTAGTC+TGG 0.299781 7_4:-894919 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 7_4:-896804 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 7_4:+896258 Msa1134420:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 7_4:+895397 Msa1134420:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 7_4:-897037 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 7_4:+895371 Msa1134420:intron
GAGTGGTAGTTGTTGTTTCC+CGG 0.347699 7_4:+893501 Msa1134420:CDS
CGAATCTGGACTCCAGTATA+AGG 0.349702 7_4:+894936 Msa1134420:CDS
GCGCTTAGAGGGAAGGATTA+TGG 0.359617 7_4:+894877 Msa1134420:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 7_4:-893292 None:intergenic
CATACAGTGCCTGCGCTTAG+AGG 0.369660 7_4:+894865 Msa1134420:intron
CCTGAGAGTGATTATAATAA+AGG 0.373753 7_4:+896777 Msa1134420:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 7_4:-896762 None:intergenic
GACTACATAGAAACCGAATC+TGG 0.408710 7_4:+894922 Msa1134420:CDS
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 7_4:+896257 Msa1134420:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 7_4:+895036 Msa1134420:intron
CGTGCTGCATCACCTTATAC+TGG 0.421611 7_4:-894948 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 7_4:+895372 Msa1134420:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 7_4:-896803 None:intergenic
TCTACCTAATTCTCAATCTC+TGG 0.425695 7_4:+893182 Msa1134420:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7_4:+893301 Msa1134420:CDS
ATCAAAATTGTCGCATAGGC+AGG 0.436623 7_4:-897482 None:intergenic
ATATCACCACCAAAACATTC+AGG 0.437986 7_4:+897028 Msa1134420:three_prime_UTR
ACTCTTACCGAGAATGTTGT+AGG 0.441297 7_4:-896810 None:intergenic
GAAGGATCAATCAATGATAC+TGG 0.446572 7_4:-897201 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 7_4:-894935 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 7_4:+896803 Msa1134420:CDS
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7_4:-893160 None:intergenic
TTCTCCGTTCAAACGATGCC+GGG 0.467196 7_4:-893519 None:intergenic
TTTACAGGGCCAACGAGCCT+TGG 0.477434 7_4:+896898 Msa1134420:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7_4:-893166 None:intergenic
TTTCTGGTTATGTTCTCCAT+AGG 0.483197 7_4:+897239 Msa1134420:three_prime_UTR
CCTTTATTATAATCACTCTC+AGG 0.484019 7_4:-896777 None:intergenic
AAAATACTCACAAGGTATGA+AGG 0.485375 7_4:-897219 None:intergenic
GTACTGTACTTTGTGTTGTG+TGG 0.489766 7_4:-893108 None:intergenic
GTTTCCCGGCATCGTTTGAA+CGG 0.495222 7_4:+893515 Msa1134420:CDS
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7_4:+893125 Msa1134420:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 7_4:+895444 Msa1134420:CDS
ATCGTTTGAACGGAGAAAGA+TGG 0.512189 7_4:+893525 Msa1134420:CDS
ATAATTGTACCACCAGAACT+TGG 0.512580 7_4:+896750 Msa1134420:CDS
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 7_4:-893103 None:intergenic
TTTCTCCGTTCAAACGATGC+CGG 0.521255 7_4:-893520 None:intergenic
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 7_4:-893305 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 7_4:+896259 Msa1134420:CDS
GCAACAGCCTCTTCAAAAGC+TGG 0.532405 7_4:-896242 None:intergenic
ATTCGGTTTCTATGTAGTCT+GGG 0.535406 7_4:-894918 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 7_4:+895430 Msa1134420:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 7_4:-895404 None:intergenic
TTACATCAAAATTGTCGCAT+AGG 0.547571 7_4:-897486 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 7_4:+895030 Msa1134420:intron
GAGTCTTGTCTATCAACCCT+TGG 0.550697 7_4:-896937 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 7_4:+895416 Msa1134420:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 7_4:+895054 Msa1134420:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 7_4:+895388 Msa1134420:CDS
ATACAGTGCCTGCGCTTAGA+GGG 0.556567 7_4:+894866 Msa1134420:intron
GTTCCTTAGCACAAAATCCA+AGG 0.568528 7_4:-896915 None:intergenic
TAATCCTTCCCTCTAAGCGC+AGG 0.569928 7_4:-894874 None:intergenic
AGTGCCTGCGCTTAGAGGGA+AGG 0.581188 7_4:+894870 Msa1134420:intron
TCCATTCAGGTAGATTGGGA+TGG 0.591083 7_4:+895376 Msa1134420:intron
AGTTCCAGCAATGACAGCAA+TGG 0.596327 7_4:-893557 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7_4:+893484 Msa1134420:intron
GCACAAAATCCAAGGCTCGT+TGG 0.605057 7_4:-896907 None:intergenic
AAATATGCAGGGTGATGACA+AGG 0.621012 7_4:+895550 Msa1134420:intron
GAGAGTGATTATAATAAAGG+TGG 0.627466 7_4:+896780 Msa1134420:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 7_4:-896759 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 7_4:-895458 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 7_4:+895433 Msa1134420:CDS
TCAATAACTACATACAGATG+AGG 0.653463 7_4:+897385 Msa1134420:three_prime_UTR
AAAGAAAGGAGAGACAGTAG+TGG 0.673908 7_4:+895068 Msa1134420:CDS
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 7_4:+896260 Msa1134420:CDS
ATAACCAGAAAATACTCACA+AGG 0.721530 7_4:-897227 None:intergenic
ATTCAAAGTAGGATCGCACG+AGG 0.729797 7_4:+895583 Msa1134420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTATTATTAATTGAAAT+TGG - chr7_4:894553-894572 None:intergenic 10.0%
!!! TTTTTTTATTTTATACTATG+TGG - chr7_4:894798-894817 None:intergenic 10.0%
!! AATCCTTAAAAAATTTAATA+TGG + chr7_4:896630-896649 Msa1134420:intron 10.0%
!!! AAGCTATAAGTTATTTTTAT+AGG - chr7_4:894102-894121 None:intergenic 15.0%
!!! TACTCGTTTTAATTTAAATA+GGG - chr7_4:894583-894602 None:intergenic 15.0%
!!! ATACTCGTTTTAATTTAAAT+AGG - chr7_4:894584-894603 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG - chr7_4:895534-895553 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG + chr7_4:895811-895830 Msa1134420:intron 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG + chr7_4:895812-895831 Msa1134420:intron 15.0%
!! AAATTATAAGTGATATAACA+TGG + chr7_4:895932-895951 Msa1134420:intron 15.0%
!! CAGTATAATAAAATAAATTC+AGG - chr7_4:896429-896448 None:intergenic 15.0%
!!! CAACCATATTAAATTTTTTA+AGG - chr7_4:896636-896655 None:intergenic 15.0%
!! GATAATAGTTAAGTTAAGTA+TGG - chr7_4:893258-893277 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG + chr7_4:893267-893286 Msa1134420:intron 20.0%
!! TTAATTTCACAAGTTATCTT+AGG - chr7_4:893839-893858 None:intergenic 20.0%
!! ATAAGCACTTAAAAATTGTT+TGG + chr7_4:894015-894034 Msa1134420:intron 20.0%
!!! TTATTTCCTTAAACTCTTTT+GGG + chr7_4:894073-894092 Msa1134420:intron 20.0%
!! ACGACTAATAATATAATGAA+GGG - chr7_4:894264-894283 None:intergenic 20.0%
!! AACGACTAATAATATAATGA+AGG - chr7_4:894265-894284 None:intergenic 20.0%
!!! ACTCGTTTTAATTTAAATAG+GGG - chr7_4:894582-894601 None:intergenic 20.0%
!!! ATATTAAGAAGTTTTGAAGA+AGG + chr7_4:894602-894621 Msa1134420:intron 20.0%
!! TCATAAACTGATAAACATAA+TGG + chr7_4:894765-894784 Msa1134420:intron 20.0%
!! TAGTAGTATTAATAAATTGC+AGG + chr7_4:895017-895036 Msa1134420:intron 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG + chr7_4:895112-895131 Msa1134420:intron 20.0%
!! TTATAATTTCGTTATAGAAC+AGG - chr7_4:895921-895940 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG + chr7_4:896457-896476 Msa1134420:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG + chr7_4:896458-896477 Msa1134420:intron 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG - chr7_4:896499-896518 None:intergenic 20.0%
!!! AATTTTAATTACGGAAATTC+AGG - chr7_4:896500-896519 None:intergenic 20.0%
!!! GCAATTGACAATTTTAATTA+CGG - chr7_4:896509-896528 None:intergenic 20.0%
!! TAATTAAAATTGTCAATTGC+TGG + chr7_4:896509-896528 Msa1134420:intron 20.0%
!! AATTAAAATTGTCAATTGCT+GGG + chr7_4:896510-896529 Msa1134420:intron 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG + chr7_4:896643-896662 Msa1134420:intron 20.0%
!! AAGAATTTGACAAATCAATT+TGG - chr7_4:896995-897014 None:intergenic 20.0%
!!! ACAATTTTGATGTAATATTC+CGG + chr7_4:897494-897513 Msa1134420:three_prime_UTR 20.0%
! GCATATATCACTTTCATTAT+GGG - chr7_4:893378-893397 None:intergenic 25.0%
! TGCATATATCACTTTCATTA+TGG - chr7_4:893379-893398 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG - chr7_4:893414-893433 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG + chr7_4:893463-893482 Msa1134420:intron 25.0%
! AAATAATCTTACATGTGCTT+AGG + chr7_4:893909-893928 Msa1134420:intron 25.0%
! AAATAAGTCAATCCAAACAA+GGG - chr7_4:893979-893998 None:intergenic 25.0%
! ACTTATTTGAGCTTATGTAT+TGG + chr7_4:893991-894010 Msa1134420:intron 25.0%
!! CTTATTTCCTTAAACTCTTT+TGG + chr7_4:894072-894091 Msa1134420:intron 25.0%
! AATACAATACAACAATGTCA+TGG - chr7_4:894241-894260 None:intergenic 25.0%
! TACTACATTGTTTAGTATAG+TGG - chr7_4:894336-894355 None:intergenic 25.0%
! GTGAAGTTGGAAAATAATAA+TGG + chr7_4:894374-894393 Msa1134420:intron 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG + chr7_4:895259-895278 Msa1134420:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG + chr7_4:895260-895279 Msa1134420:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG + chr7_4:895538-895557 Msa1134420:intron 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG + chr7_4:895539-895558 Msa1134420:intron 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG + chr7_4:895572-895591 Msa1134420:CDS 25.0%
! ATATTAATCATTACATGACG+AGG - chr7_4:895616-895635 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG + chr7_4:895634-895653 Msa1134420:intron 25.0%
! AAAGATCCTATTGAAATTGA+AGG - chr7_4:895643-895662 None:intergenic 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG + chr7_4:895648-895667 Msa1134420:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG - chr7_4:895842-895861 None:intergenic 25.0%
! TATATAAAACTGAACCACAA+AGG - chr7_4:895843-895862 None:intergenic 25.0%
! TATTAGTTCACTAAACTTGT+TGG + chr7_4:896114-896133 Msa1134420:intron 25.0%
!! ATTAGTTCACTAAACTTGTT+GGG + chr7_4:896115-896134 Msa1134420:intron 25.0%
! AATTTGAGTGCTTAATATGT+TGG - chr7_4:896146-896165 None:intergenic 25.0%
! AGAAACTGTAATTCAGTAAA+TGG - chr7_4:896368-896387 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG + chr7_4:896382-896401 Msa1134420:intron 25.0%
! ATCAATTCAAACTTTGGATT+TGG + chr7_4:896388-896407 Msa1134420:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG + chr7_4:896389-896408 Msa1134420:intron 25.0%
! AGAGTAAGAATTTATAGATG+TGG - chr7_4:896452-896471 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG + chr7_4:896459-896478 Msa1134420:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG + chr7_4:896685-896704 Msa1134420:intron 25.0%
! GAATTAATTGTAGACTTATC+TGG - chr7_4:897171-897190 None:intergenic 25.0%
!! ATTTCTTTTGATCACTTTGT+TGG + chr7_4:897444-897463 Msa1134420:three_prime_UTR 25.0%
! ATAAACGAACAATGAAAAAC+CGG - chr7_4:897516-897535 None:intergenic 25.0%
!! TTTTTCATTGTTCGTTTATC+TGG + chr7_4:897517-897536 Msa1134420:three_prime_UTR 25.0%
AATGAAAGAAGAATACTGAC+CGG - chr7_4:893323-893342 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG - chr7_4:893476-893495 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG + chr7_4:893475-893494 Msa1134420:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG + chr7_4:893568-893587 Msa1134420:CDS 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG + chr7_4:893577-893596 Msa1134420:CDS 30.0%
TCAAATAAGCCAATTCAAAG+AGG + chr7_4:893953-893972 Msa1134420:intron 30.0%
CAAATAAGTCAATCCAAACA+AGG - chr7_4:893980-893999 None:intergenic 30.0%
CAGCGTATAGATATTTCATA+AGG - chr7_4:894045-894064 None:intergenic 30.0%
!! AACAATGTCATGGTCTTATT+TGG - chr7_4:894231-894250 None:intergenic 30.0%
AAAACATCTTAGAGTGAAGT+TGG + chr7_4:894361-894380 Msa1134420:intron 30.0%
AACATCAATAGCCGAAAATT+TGG + chr7_4:894420-894439 Msa1134420:intron 30.0%
!! AGTTTCAGTTTGTTATCTCA+CGG + chr7_4:894489-894508 Msa1134420:intron 30.0%
AGAGCGCAAAAGAAAAATTT+AGG - chr7_4:895213-895232 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG + chr7_4:895287-895306 Msa1134420:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG - chr7_4:895306-895325 None:intergenic 30.0%
! TTTTCTATAGGTCTTGATGT+CGG + chr7_4:895660-895679 Msa1134420:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG + chr7_4:895740-895759 Msa1134420:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG + chr7_4:895947-895966 Msa1134420:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG + chr7_4:896160-896179 Msa1134420:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG - chr7_4:896359-896378 None:intergenic 30.0%
AAGTAAGGCAAATGTATGTT+TGG + chr7_4:896658-896677 Msa1134420:intron 30.0%
AGTAAGGCAAATGTATGTTT+GGG + chr7_4:896659-896678 Msa1134420:intron 30.0%
CCTTTATTATAATCACTCTC+AGG - chr7_4:896780-896799 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG + chr7_4:896777-896796 Msa1134420:CDS 30.0%
GAGAGTGATTATAATAAAGG+TGG + chr7_4:896780-896799 Msa1134420:CDS 30.0%
! CAATGCGAATATGTTTTACA+GGG + chr7_4:896884-896903 Msa1134420:intron 30.0%
! AGAAACTAACCTGAATGTTT+TGG - chr7_4:897040-897059 None:intergenic 30.0%
AAAATACTCACAAGGTATGA+AGG - chr7_4:897222-897241 None:intergenic 30.0%
ATAACCAGAAAATACTCACA+AGG - chr7_4:897230-897249 None:intergenic 30.0%
! TCATGATTTTTCATCACCTA+TGG - chr7_4:897258-897277 None:intergenic 30.0%
TCAATAACTACATACAGATG+AGG + chr7_4:897385-897404 Msa1134420:three_prime_UTR 30.0%
TTACATCAAAATTGTCGCAT+AGG - chr7_4:897489-897508 None:intergenic 30.0%
! AACATTTTGTGTGACATTTG+AGG + chr7_4:897547-897566 Msa1134420:three_prime_UTR 30.0%
! GGAAGTTGCTAGATTTTGAA+GGG - chr7_4:893085-893104 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG - chr7_4:893086-893105 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG + chr7_4:893125-893144 Msa1134420:exon 35.0%
AGAAAGAGAAGCAATGGAAA+AGG - chr7_4:893163-893182 None:intergenic 35.0%
TCTACCTAATTCTCAATCTC+TGG + chr7_4:893182-893201 Msa1134420:CDS 35.0%
AGTACCAGAGATTGAGAATT+AGG - chr7_4:893189-893208 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG - chr7_4:893232-893251 None:intergenic 35.0%
GCATTTGTAGACATTAGACT+TGG + chr7_4:893699-893718 Msa1134420:intron 35.0%
! ACACCTCTGTTCCAAATTTT+CGG - chr7_4:894434-894453 None:intergenic 35.0%
!! GTTTCAGTTTGTTATCTCAC+GGG + chr7_4:894490-894509 Msa1134420:intron 35.0%
ACATAGTTCAAATACCCCAA+AGG + chr7_4:894513-894532 Msa1134420:intron 35.0%
! TCATTTTACACCTTCCTTTG+GGG - chr7_4:894530-894549 None:intergenic 35.0%
!! GTCATTTTACACCTTCCTTT+GGG - chr7_4:894531-894550 None:intergenic 35.0%
!!! AGAAGTTTTGAAGAAGGTCA+TGG + chr7_4:894608-894627 Msa1134420:intron 35.0%
! CCTTGTTTGTGTGTTTGAAA+CGG + chr7_4:894644-894663 Msa1134420:intron 35.0%
! TTTGTGTGTTTGAAACGGAA+AGG + chr7_4:894649-894668 Msa1134420:intron 35.0%
ATTCGGTTTCTATGTAGTCT+GGG - chr7_4:894921-894940 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG - chr7_4:895062-895081 None:intergenic 35.0%
ATCTACATAGCAGACATTCT+AGG + chr7_4:895236-895255 Msa1134420:intron 35.0%
GATTTGACAACTTTACTCCT+AGG + chr7_4:895286-895305 Msa1134420:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG + chr7_4:895372-895391 Msa1134420:intron 35.0%
TATGCGACCATAATAACCTA+TGG - chr7_4:895407-895426 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG - chr7_4:895438-895457 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG - chr7_4:895461-895480 None:intergenic 35.0%
CTACTGCATTCAACATTACT+TGG - chr7_4:895741-895760 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG + chr7_4:895739-895758 Msa1134420:intron 35.0%
GAATAAGGATAAGTCCTACT+TGG + chr7_4:895765-895784 Msa1134420:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG + chr7_4:895775-895794 Msa1134420:intron 35.0%
GAATCCTAGTATAACCAAGT+AGG - chr7_4:895782-895801 None:intergenic 35.0%
! TATTAAGCATGTGCTACTGT+TGG + chr7_4:895866-895885 Msa1134420:intron 35.0%
AGTTTAGTCCTAATCCCAAA+GGG - chr7_4:895991-896010 None:intergenic 35.0%
ATGCAGACTCCAGAAAATAA+GGG - chr7_4:896172-896191 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG + chr7_4:896214-896233 Msa1134420:intron 35.0%
ATATAGCTAACTTCACCTAG+CGG - chr7_4:896590-896609 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG + chr7_4:896727-896746 Msa1134420:intron 35.0%
ATAATTGTACCACCAGAACT+TGG + chr7_4:896750-896769 Msa1134420:CDS 35.0%
! GCAATGCGAATATGTTTTAC+AGG + chr7_4:896883-896902 Msa1134420:intron 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG + chr7_4:896921-896940 Msa1134420:CDS 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG - chr7_4:897024-897043 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG - chr7_4:897025-897044 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG + chr7_4:897028-897047 Msa1134420:three_prime_UTR 35.0%
!! AACTAACCTGAATGTTTTGG+TGG - chr7_4:897037-897056 None:intergenic 35.0%
!!! GTTTTTTTCCATCAGTTCAC+TGG - chr7_4:897138-897157 None:intergenic 35.0%
AGACTTATCTGGCAATACAA+AGG - chr7_4:897160-897179 None:intergenic 35.0%
GAAGGATCAATCAATGATAC+TGG - chr7_4:897204-897223 None:intergenic 35.0%
! CATACCTTGTGAGTATTTTC+TGG + chr7_4:897223-897242 Msa1134420:three_prime_UTR 35.0%
!! TTTCTGGTTATGTTCTCCAT+AGG + chr7_4:897239-897258 Msa1134420:three_prime_UTR 35.0%
GTACTTTGTGTTGTGTGGAA+TGG - chr7_4:893106-893125 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG - chr7_4:893111-893130 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG - chr7_4:893169-893188 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG - chr7_4:893295-893314 None:intergenic 40.0%
ATCGTTTGAACGGAGAAAGA+TGG + chr7_4:893525-893544 Msa1134420:CDS 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG + chr7_4:893571-893590 Msa1134420:CDS 40.0%
AAACAAGGGCCTCTTTGAAT+TGG - chr7_4:893965-893984 None:intergenic 40.0%
AATTCAAAGAGGCCCTTGTT+TGG + chr7_4:893964-893983 Msa1134420:intron 40.0%
AGGCAACCCAAAAGAGTTTA+AGG - chr7_4:894082-894101 None:intergenic 40.0%
! TAGCCGAAAATTTGGAACAG+AGG + chr7_4:894428-894447 Msa1134420:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG + chr7_4:894448-894467 Msa1134420:intron 40.0%
AGTTCAAATACCCCAAAGGA+AGG + chr7_4:894517-894536 Msa1134420:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG - chr7_4:894532-894551 None:intergenic 40.0%
!!! GTTTTGAAGAAGGTCATGGT+CGG + chr7_4:894612-894631 Msa1134420:intron 40.0%
CCGTTTCAAACACACAAACA+AGG - chr7_4:894647-894666 None:intergenic 40.0%
! TCTTCACTGATGGTGAAAAG+TGG + chr7_4:894720-894739 Msa1134420:intron 40.0%
! CTTCACTGATGGTGAAAAGT+GGG + chr7_4:894721-894740 Msa1134420:intron 40.0%
! GATTCGGTTTCTATGTAGTC+TGG - chr7_4:894922-894941 None:intergenic 40.0%
GACTACATAGAAACCGAATC+TGG + chr7_4:894922-894941 Msa1134420:CDS 40.0%
CTTATACTGGAGTCCAGATT+CGG - chr7_4:894938-894957 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG + chr7_4:895054-895073 Msa1134420:CDS 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG - chr7_4:895063-895082 None:intergenic 40.0%
ACTACTGTCTCTCCTTTCTT+TGG - chr7_4:895069-895088 None:intergenic 40.0%
AAAGAAAGGAGAGACAGTAG+TGG + chr7_4:895068-895087 Msa1134420:CDS 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG + chr7_4:895363-895382 Msa1134420:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG + chr7_4:895371-895390 Msa1134420:intron 40.0%
GGCTACACCATAGGTTATTA+TGG + chr7_4:895397-895416 Msa1134420:CDS 40.0%
GAAGCCCGGAATAAAACAAA+AGG + chr7_4:895430-895449 Msa1134420:CDS 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG - chr7_4:895437-895456 None:intergenic 40.0%
CTATCTAGACATTGTCGAAG+TGG + chr7_4:895494-895513 Msa1134420:intron 40.0%
AAATATGCAGGGTGATGACA+AGG + chr7_4:895550-895569 Msa1134420:intron 40.0%
GAATGCAGTAGGGTTGAATA+AGG + chr7_4:895750-895769 Msa1134420:intron 40.0%
TCGACATCCTTCGTTAGTAT+TGG + chr7_4:895889-895908 Msa1134420:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG + chr7_4:895893-895912 Msa1134420:intron 40.0%
GAGTTTAGTCCTAATCCCAA+AGG - chr7_4:895992-896011 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG - chr7_4:896173-896192 None:intergenic 40.0%
!! GGTAATACCAGCTTTTGAAG+AGG + chr7_4:896235-896254 Msa1134420:intron 40.0%
GTAAATGGCATGAAAGGACT+TGG - chr7_4:896353-896372 None:intergenic 40.0%
AACTTCACCTAGCGGAAAAA+GGG - chr7_4:896582-896601 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG - chr7_4:896583-896602 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG + chr7_4:896589-896608 Msa1134420:intron 40.0%
ACTCTTACCGAGAATGTTGT+AGG - chr7_4:896813-896832 None:intergenic 40.0%
!! AGTTGATGAACACTAGTGAC+AGG - chr7_4:896841-896860 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG - chr7_4:896918-896937 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG + chr7_4:896920-896939 Msa1134420:CDS 40.0%
ATCAAAATTGTCGCATAGGC+AGG - chr7_4:897485-897504 None:intergenic 40.0%
CTCTCCGATTCTTCTTTCTC+CGG + chr7_4:893301-893320 Msa1134420:CDS 45.0%
CTGACCGGAGAAAGAAGAAT+CGG - chr7_4:893308-893327 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG + chr7_4:893484-893503 Msa1134420:intron 45.0%
!! GAGTGGTAGTTGTTGTTTCC+CGG + chr7_4:893501-893520 Msa1134420:CDS 45.0%
TTTCTCCGTTCAAACGATGC+CGG - chr7_4:893523-893542 None:intergenic 45.0%
TCTTCCATTGCTGTCATTGC+TGG + chr7_4:893553-893572 Msa1134420:CDS 45.0%
AGTTCCAGCAATGACAGCAA+TGG - chr7_4:893560-893579 None:intergenic 45.0%
! GTGTGTTTGAAACGGAAAGG+AGG + chr7_4:894652-894671 Msa1134420:intron 45.0%
TGCAGTTGTGTCTTCACTGA+TGG + chr7_4:894710-894729 Msa1134420:intron 45.0%
CGAATCTGGACTCCAGTATA+AGG + chr7_4:894936-894955 Msa1134420:CDS 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG - chr7_4:895051-895070 None:intergenic 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG - chr7_4:895052-895071 None:intergenic 45.0%
TCCATTCAGGTAGATTGGGA+TGG + chr7_4:895376-895395 Msa1134420:intron 45.0%
! ATGGTCGCATATTTGAAGCC+CGG + chr7_4:895416-895435 Msa1134420:CDS 45.0%
GCCCGGAATAAAACAAAAGG+CGG + chr7_4:895433-895452 Msa1134420:CDS 45.0%
ATTCAAAGTAGGATCGCACG+AGG + chr7_4:895583-895602 Msa1134420:CDS 45.0%
TCTAGAGGGAAAACCCTTTG+TGG + chr7_4:895826-895845 Msa1134420:intron 45.0%
GAGCCAACCAATACTAACGA+AGG - chr7_4:895899-895918 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+GGG - chr7_4:896041-896060 None:intergenic 45.0%
! TTGCCACAAGGTGTTATCGT+GGG + chr7_4:896041-896060 Msa1134420:intron 45.0%
AAACCCACGATAACACCTTG+TGG - chr7_4:896047-896066 None:intergenic 45.0%
! TATGAAGCCCTTTTTCCGCT+AGG + chr7_4:896572-896591 Msa1134420:intron 45.0%
! TCAGGATATCCAAGTTCTGG+TGG - chr7_4:896762-896781 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG - chr7_4:896765-896784 None:intergenic 45.0%
CCGAGAATGTTGTAGGTCTT+GGG - chr7_4:896806-896825 None:intergenic 45.0%
CCCAAGACCTACAACATTCT+CGG + chr7_4:896803-896822 Msa1134420:CDS 45.0%
ACCGAGAATGTTGTAGGTCT+TGG - chr7_4:896807-896826 None:intergenic 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG + chr7_4:896912-896931 Msa1134420:CDS 45.0%
! GAGTCTTGTCTATCAACCCT+TGG - chr7_4:896940-896959 None:intergenic 45.0%
GTCTTGCTCTGACATGGATT+CGG - chr7_4:897113-897132 None:intergenic 45.0%
CAAGACTACCAGTGAACTGA+TGG + chr7_4:897127-897146 Msa1134420:intron 45.0%
GTTTCCCGGCATCGTTTGAA+CGG + chr7_4:893515-893534 Msa1134420:CDS 50.0%
TTCTCCGTTCAAACGATGCC+GGG - chr7_4:893522-893541 None:intergenic 50.0%
GGTGCTTATGCGAGTAGAGA+AGG + chr7_4:893930-893949 Msa1134420:intron 50.0%
! ACTGATGGTGAAAAGTGGGC+TGG + chr7_4:894725-894744 Msa1134420:intron 50.0%
ATACAGTGCCTGCGCTTAGA+GGG + chr7_4:894866-894885 Msa1134420:intron 50.0%
TAATCCTTCCCTCTAAGCGC+AGG - chr7_4:894877-894896 None:intergenic 50.0%
GCGCTTAGAGGGAAGGATTA+TGG + chr7_4:894877-894896 Msa1134420:CDS 50.0%
CGTGCTGCATCACCTTATAC+TGG - chr7_4:894951-894970 None:intergenic 50.0%
AAATTGCAGGACTTGCGACC+CGG + chr7_4:895030-895049 Msa1134420:intron 50.0%
GCCATCCCAATCTACCTGAA+TGG - chr7_4:895380-895399 None:intergenic 50.0%
GATTGGGATGGCTACACCAT+AGG + chr7_4:895388-895407 Msa1134420:CDS 50.0%
AACAAAAGGCGGTTCCTTCG+AGG + chr7_4:895444-895463 Msa1134420:CDS 50.0%
TGAAGAGTCTGAACGCCCTT+TGG + chr7_4:895973-895992 Msa1134420:intron 50.0%
GAAGAGTCTGAACGCCCTTT+GGG + chr7_4:895974-895993 Msa1134420:intron 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG + chr7_4:895980-895999 Msa1134420:intron 50.0%
TCGACTTTACCCTTGCCACA+AGG + chr7_4:896029-896048 Msa1134420:intron 50.0%
CACGATAACACCTTGTGGCA+AGG - chr7_4:896042-896061 None:intergenic 50.0%
! CTTGCCACAAGGTGTTATCG+TGG + chr7_4:896040-896059 Msa1134420:intron 50.0%
GCAACAGCCTCTTCAAAAGC+TGG - chr7_4:896245-896264 None:intergenic 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG + chr7_4:896245-896264 Msa1134420:CDS 50.0%
ACTTGGACGTAACACAGCTC+AGG - chr7_4:896336-896355 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG - chr7_4:896910-896929 None:intergenic 50.0%
! CTGGTAGTCTTGCTCTGACA+TGG - chr7_4:897119-897138 None:intergenic 50.0%
CATACAGTGCCTGCGCTTAG+AGG + chr7_4:894865-894884 Msa1134420:intron 55.0%
GCTGTTGCAGGCATGTCTCT+CGG + chr7_4:896257-896276 Msa1134420:CDS 55.0%
CTGTTGCAGGCATGTCTCTC+GGG + chr7_4:896258-896277 Msa1134420:CDS 55.0%
TGTTGCAGGCATGTCTCTCG+GGG + chr7_4:896259-896278 Msa1134420:CDS 55.0%
TTTACAGGGCCAACGAGCCT+TGG + chr7_4:896898-896917 Msa1134420:intron 55.0%
AGTGCCTGCGCTTAGAGGGA+AGG + chr7_4:894870-894889 Msa1134420:intron 60.0%
CAGGACTTGCGACCCGGAAA+TGG + chr7_4:895036-895055 Msa1134420:intron 60.0%
GTTGCAGGCATGTCTCTCGG+GGG + chr7_4:896260-896279 Msa1134420:CDS 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG + chr7_4:896270-896289 Msa1134420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 893030 897577 893030 ID=Msa1134420;Name=Msa1134420
chr7_4 mRNA 893030 897577 893030 ID=Msa1134420-mRNA-1;Parent=Msa1134420;Name=Msa1134420-mRNA-1;_AED=0.28;_eAED=0.28;_QI=114|1|1|1|0.9|0.81|11|455|240
chr7_4 exon 893030 893203 893030 ID=Msa1134420-mRNA-1:exon:330;Parent=Msa1134420-mRNA-1
chr7_4 exon 893289 893322 893289 ID=Msa1134420-mRNA-1:exon:331;Parent=Msa1134420-mRNA-1
chr7_4 exon 893485 893622 893485 ID=Msa1134420-mRNA-1:exon:332;Parent=Msa1134420-mRNA-1
chr7_4 exon 894872 894957 894872 ID=Msa1134420-mRNA-1:exon:333;Parent=Msa1134420-mRNA-1
chr7_4 exon 895039 895089 895039 ID=Msa1134420-mRNA-1:exon:334;Parent=Msa1134420-mRNA-1
chr7_4 exon 895385 895465 895385 ID=Msa1134420-mRNA-1:exon:335;Parent=Msa1134420-mRNA-1
chr7_4 exon 895560 895604 895560 ID=Msa1134420-mRNA-1:exon:336;Parent=Msa1134420-mRNA-1
chr7_4 exon 896236 896291 896236 ID=Msa1134420-mRNA-1:exon:337;Parent=Msa1134420-mRNA-1
chr7_4 exon 896749 896824 896749 ID=Msa1134420-mRNA-1:exon:338;Parent=Msa1134420-mRNA-1
chr7_4 exon 896905 897049 896905 ID=Msa1134420-mRNA-1:exon:339;Parent=Msa1134420-mRNA-1
chr7_4 exon 897172 897577 897172 ID=Msa1134420-mRNA-1:exon:340;Parent=Msa1134420-mRNA-1
chr7_4 five_prime_UTR 893030 893143 893030 ID=Msa1134420-mRNA-1:five_prime_utr;Parent=Msa1134420-mRNA-1
chr7_4 CDS 893144 893203 893144 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 893289 893322 893289 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 893485 893622 893485 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 894872 894957 894872 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 895039 895089 895039 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 895385 895465 895385 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 895560 895604 895560 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 896236 896291 896236 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 896749 896824 896749 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 CDS 896905 897000 896905 ID=Msa1134420-mRNA-1:cds;Parent=Msa1134420-mRNA-1
chr7_4 three_prime_UTR 897001 897049 897001 ID=Msa1134420-mRNA-1:three_prime_utr;Parent=Msa1134420-mRNA-1
chr7_4 three_prime_UTR 897172 897577 897172 ID=Msa1134420-mRNA-1:three_prime_utr;Parent=Msa1134420-mRNA-1
Gene Sequence

>Msa1134420

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAATTCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTCCCGGCATCGTTTGAACGGAGAAAGATGGCTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTAGAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACATAGAAACCGAATCTGGACTCCAGTATAAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGACAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCAGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATTGA

Protein sequence

>Msa1134420

MASLLSFSIASLSLPNSQSLDPDNLSDSSFSGKSNGKSGSCCFPASFERRKMALSSIAVIAGTFCKGGIGLASEFADMPALRGKDYGKSKMKYPDYIETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPN*