AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094900 MtrunA17_Chr2g0332621 94.585 277 15 0 1 277 1 277 0.0 536
Msa0094900 MtrunA17_Chr5g0437771 33.871 248 157 5 30 273 35 279 3.83e-37 132
Msa0094900 MtrunA17_Chr3g0114231 34.615 208 120 4 78 273 71 274 8.90e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094900 AT3G15690.2 49.097 277 126 5 1 276 1 263 1.33e-81 246
Msa0094900 AT1G52670.1 46.154 273 143 4 6 276 4 274 3.26e-73 226
Msa0094900 AT3G15690.1 45.669 254 123 5 1 253 1 240 5.97e-65 204
Msa0094900 AT3G15690.3 45.161 248 123 4 7 253 7 242 2.86e-63 199
Msa0094900 AT3G56130.1 34.956 226 126 4 63 272 58 278 5.52e-35 127
Msa0094900 AT3G56130.2 36.458 192 102 3 96 272 16 202 2.50e-33 121
Msa0094900 AT3G56130.3 55.319 94 42 0 179 272 98 191 2.48e-30 113
Msa0094900 AT3G56130.4 31.884 207 120 4 63 253 58 259 1.07e-24 100
Msa0094900 AT3G56130.5 29.319 191 114 4 63 237 58 243 7.02e-17 78.6

Find 88 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTAACATCATTAAAAT+TGG 0.116441 1_2:+78327449 None:intergenic
CTCTTTGCAGGTGGAATTCT+TGG 0.142729 1_2:-78327276 Msa0094900:intron
TTTATCCTTATCTTCCCTTT+TGG 0.207575 1_2:+78326021 None:intergenic
GTTGAGCTTTCACAACATTT+TGG 0.245452 1_2:-78330414 Msa0094900:CDS
GCGGGTGTATTTATACTTAC+AGG 0.253090 1_2:+78326997 None:intergenic
ATATTGAAGCTTCTTTATTC+CGG 0.272327 1_2:+78326187 None:intergenic
GAAACTGATCCATTTGGTTT+AGG 0.301102 1_2:+78326967 None:intergenic
TCTGAAGAGATTAAATCTTC+TGG 0.320860 1_2:-78327492 Msa0094900:CDS
AAGTTCTAATCACATGTTAA+TGG 0.322658 1_2:+78331666 None:intergenic
TATTGAAGCTTCTTTATTCC+GGG 0.339110 1_2:+78326188 None:intergenic
TTGAGAACAAGTTATATATA+TGG 0.339886 1_2:-78326104 Msa0094900:three_prime_UTR
CAGAAGATCTCGGACGATAA+AGG 0.350185 1_2:-78326760 Msa0094900:CDS
TCTGCTGATTGGTCATTAGA+TGG 0.359586 1_2:+78330312 None:intergenic
GCAATATTGCCGTCATTTCC+CGG 0.364958 1_2:-78326206 Msa0094900:CDS
GATGATAAACAGCTGTTTCA+AGG 0.373445 1_2:-78327527 Msa0094900:intron
AATGATATATATCAGCTTGA+TGG 0.374079 1_2:-78327087 Msa0094900:intron
GTTGGGGACTTGGATTGCTT+TGG 0.378715 1_2:+78331629 None:intergenic
GTGACAGATCCAGTTGGTTA+TGG 0.384983 1_2:-78326242 Msa0094900:intron
CAACTGGTAAGTTGGGGACT+TGG 0.388451 1_2:+78331619 None:intergenic
TCTTTCTAGTCTGACGTGTC+CGG 0.391008 1_2:-78326382 Msa0094900:intron
CTTTCTAGTCTGACGTGTCC+GGG 0.391958 1_2:-78326381 Msa0094900:intron
GTGAGATGAAGCCATTGAAT+TGG 0.400250 1_2:+78331488 None:intergenic
AGAAGATCTCGGACGATAAA+GGG 0.403087 1_2:-78326759 Msa0094900:CDS
AATGTAGAAACTGATCCATT+TGG 0.403959 1_2:+78326961 None:intergenic
AAACGTATCACAGGTAGCTT+AGG 0.415749 1_2:-78330483 Msa0094900:intron
TAATCCCTCTTCCAATTCAA+TGG 0.416402 1_2:-78331499 Msa0094900:exon
TACATTGGATCTCTGCTGAT+TGG 0.416759 1_2:+78330301 None:intergenic
CTGCTGATTGGTCATTAGAT+GGG 0.417953 1_2:+78330313 None:intergenic
TTTAATACACAAACCTCAAC+TGG 0.428231 1_2:+78326504 None:intergenic
TTATGTGAGACGGCATCAAT+TGG 0.434687 1_2:-78327245 Msa0094900:CDS
TTAAGAGTGTTGAATACTGC+AGG 0.442291 1_2:+78326061 None:intergenic
GCACTAACATCATTAAAATT+GGG 0.455388 1_2:+78327450 None:intergenic
AAAGAGAGAATGAAGGTTGA+CGG 0.471060 1_2:+78331588 None:intergenic
CTTACAGGAGCAGGAATTGA+AGG 0.477237 1_2:+78327012 None:intergenic
GTACTAGAAGTTGGATCAGT+AGG 0.483887 1_2:-78330392 Msa0094900:CDS
TCAACGAGAAAGAATGAGAA+TGG 0.488105 1_2:+78325987 None:intergenic
TTCTTTATTCCGGGAAATGA+CGG 0.488727 1_2:+78326197 None:intergenic
TGGTGGGCAGCTACCAGTTG+AGG 0.498148 1_2:-78326517 Msa0094900:intron
TTTGGTTTAGGTGCTTCTGC+GGG 0.511687 1_2:+78326979 None:intergenic
GCAGAAGCACCTAAACCAAA+TGG 0.516816 1_2:-78326976 Msa0094900:CDS
AGTGCATCACCATAACCAAC+TGG 0.518295 1_2:+78326233 None:intergenic
CCTTCTTCATTGTCTATCGA+GGG 0.519793 1_2:-78326910 Msa0094900:CDS
GAGAGAGAAAGAGAGAATGA+AGG 0.522626 1_2:+78331581 None:intergenic
AAAGTATTGAACTTGCACTT+TGG 0.522702 1_2:-78330447 Msa0094900:CDS
GTCACTGCAGTACACTAGAT+TGG 0.524258 1_2:-78330367 Msa0094900:CDS
ATAGACAATGAAGAAGGTAC+TGG 0.526221 1_2:+78326916 None:intergenic
TGCTGATTGGTCATTAGATG+GGG 0.529817 1_2:+78330314 None:intergenic
TAGAATCTTGATGACCTCCC+CGG 0.535783 1_2:+78326363 None:intergenic
ACCTTCTTCATTGTCTATCG+AGG 0.541849 1_2:-78326911 Msa0094900:CDS
GTATTTATACTTACAGGAGC+AGG 0.544888 1_2:+78327003 None:intergenic
ATTTGGTTTAGGTGCTTCTG+CGG 0.545135 1_2:+78326978 None:intergenic
TGAAGCCATTGAATTGGAAG+AGG 0.546926 1_2:+78331494 None:intergenic
AGTTTCTACATTGACAACAT+TGG 0.552501 1_2:-78326950 Msa0094900:CDS
AAAGAATGAGAATGGAGGGT+TGG 0.559129 1_2:+78325995 None:intergenic
TGCTCCTCCTTCATGTAATG+AGG 0.560231 1_2:-78326730 Msa0094900:intron
CCCTCGATAGACAATGAAGA+AGG 0.562111 1_2:+78326910 None:intergenic
TGTTACATTGAACAGCTTGG+TGG 0.563421 1_2:-78326534 Msa0094900:CDS
AACGTATCACAGGTAGCTTA+GGG 0.563493 1_2:-78330482 Msa0094900:intron
ATTTCACCTGCGTGTAGTGA+GGG 0.566652 1_2:-78327064 Msa0094900:CDS
AATTGTACCTCATTACATGA+AGG 0.567951 1_2:+78326723 None:intergenic
CGAGAAAGAATGAGAATGGA+GGG 0.581044 1_2:+78325991 None:intergenic
GTTACATTGAACAGCTTGGT+GGG 0.584700 1_2:-78326533 Msa0094900:CDS
ATCAAGATTCTAAGAGAGGA+TGG 0.587641 1_2:-78326352 Msa0094900:CDS
GAAGCCATTGAATTGGAAGA+GGG 0.588124 1_2:+78331495 None:intergenic
TTGGCATCTTCAGAAGATCT+CGG 0.594306 1_2:-78326770 Msa0094900:CDS
AAAAGCTGCAGATGAAGGGT+TGG 0.594334 1_2:-78326878 Msa0094900:CDS
ATTTGTTACATTGAACAGCT+TGG 0.595450 1_2:-78326537 Msa0094900:CDS
GATTTCACCTGCGTGTAGTG+AGG 0.596484 1_2:-78327065 Msa0094900:CDS
ACGAGAAAGAATGAGAATGG+AGG 0.597759 1_2:+78325990 None:intergenic
GGTGATAATTCATTCTCCAA+CGG 0.599409 1_2:-78326857 Msa0094900:intron
TTTCTAGTCTGACGTGTCCG+GGG 0.599859 1_2:-78326380 Msa0094900:intron
ACAGCTGTTTCAAGGTCAGA+AGG 0.607336 1_2:-78327519 Msa0094900:intron
GAACAAGTTATATATATGGT+AGG 0.609147 1_2:-78326100 Msa0094900:three_prime_UTR
TATTCAACACTCTTAAACTG+AGG 0.616680 1_2:-78326054 Msa0094900:three_prime_UTR
GGTCATCAAGATTCTAAGAG+AGG 0.618953 1_2:-78326356 Msa0094900:CDS
TAAGAGTGTTGAATACTGCA+GGG 0.627436 1_2:+78326062 None:intergenic
CTAGTCTGACGTGTCCGGGG+AGG 0.637170 1_2:-78326377 Msa0094900:intron
AGAAGGTACTGGTTTCGAGA+TGG 0.639561 1_2:+78326927 None:intergenic
GGTCACTAACTTATGTGAGA+CGG 0.640399 1_2:-78327255 Msa0094900:CDS
GATTAGAACTTTGACGATGG+TGG 0.641199 1_2:-78331654 Msa0094900:five_prime_UTR
TGTACCTCATTACATGAAGG+AGG 0.650394 1_2:+78326726 None:intergenic
ATTAGAACTTTGACGATGGT+GGG 0.650876 1_2:-78331653 Msa0094900:five_prime_UTR
GCTGTTTCAAGGTCAGAAGG+TGG 0.666496 1_2:-78327516 Msa0094900:CDS
TGTGATTAGAACTTTGACGA+TGG 0.679846 1_2:-78331657 Msa0094900:five_prime_UTR
ACAGGAGCAGGAATTGAAGG+AGG 0.687530 1_2:+78327015 None:intergenic
TCAAATCCCTCACTACACGC+AGG 0.704009 1_2:+78327058 None:intergenic
GTGTTTGTGACAGATCCAGT+TGG 0.712286 1_2:-78326248 Msa0094900:intron
AAGATTCTAAGAGAGGATGG+CGG 0.764705 1_2:-78326349 Msa0094900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAGTGAAAAAAATTT+AGG - chr1_2:78326903-78326922 Msa0094900:CDS 10.0%
!!! TATTATTATTTTTGGGTAAT+TGG - chr1_2:78326370-78326389 Msa0094900:CDS 15.0%
!! TTGTATAAAAAACAAAAAAC+AGG + chr1_2:78326635-78326654 None:intergenic 15.0%
!!! TTTTTTGTTTTTTATACAAG+AGG - chr1_2:78326636-78326655 Msa0094900:intron 15.0%
!! TGTTTATTTCATTACATAAT+GGG - chr1_2:78326961-78326980 Msa0094900:CDS 15.0%
!! ATATTATATGAGTACATATT+CGG - chr1_2:78327642-78327661 Msa0094900:intron 15.0%
!! TCTAAAAAATAAAAATTGAC+CGG - chr1_2:78328289-78328308 Msa0094900:intron 15.0%
!!! AACATAAGCTTTATAAATAA+TGG + chr1_2:78328422-78328441 None:intergenic 15.0%
!! TTATTTATAAAGCTTATGTT+AGG - chr1_2:78328422-78328441 Msa0094900:intron 15.0%
!! TTATGATCAATAAAAATTCA+GGG + chr1_2:78328469-78328488 None:intergenic 15.0%
!! TAAGTAAAAAAAATTAACGA+AGG - chr1_2:78328486-78328505 Msa0094900:intron 15.0%
!! ATAAAGATTAATGTGTATTT+AGG + chr1_2:78328715-78328734 None:intergenic 15.0%
!!! TTGTTTTCAATTAAATTTTC+CGG + chr1_2:78329485-78329504 None:intergenic 15.0%
!! TTTAAACAGATAAAAAATAG+AGG + chr1_2:78331349-78331368 None:intergenic 15.0%
!! GAGGTTAAAAAAAATATACT+AGG + chr1_2:78326240-78326259 None:intergenic 20.0%
!!! AAAACATTGATATTGTTTTG+AGG + chr1_2:78326259-78326278 None:intergenic 20.0%
!! TAAAGTATATTCTCACAAAA+AGG - chr1_2:78326518-78326537 Msa0094900:CDS 20.0%
!! AAAGTATATTCTCACAAAAA+GGG - chr1_2:78326519-78326538 Msa0094900:CDS 20.0%
!! TGAAAAGAAATTCAAATGAT+TGG - chr1_2:78326696-78326715 Msa0094900:intron 20.0%
!! GTGTTTATTTCATTACATAA+TGG - chr1_2:78326960-78326979 Msa0094900:CDS 20.0%
!!! TTAGAATGGTTTTTATTGTT+TGG - chr1_2:78327125-78327144 Msa0094900:intron 20.0%
!! AAAGAATAAAGAACTTACAT+TGG + chr1_2:78327378-78327397 None:intergenic 20.0%
!!! TTTTTTTTTTTGTCCTACTT+CGG - chr1_2:78327506-78327525 Msa0094900:CDS 20.0%
!! TATTATATGAGTACATATTC+GGG - chr1_2:78327643-78327662 Msa0094900:intron 20.0%
!!! CAATTACCATATTTTCATTT+TGG + chr1_2:78327812-78327831 None:intergenic 20.0%
!! TGAAAATATGGTAATTGTTT+AGG - chr1_2:78327815-78327834 Msa0094900:intron 20.0%
!! AGTAATATACTCATATACAT+TGG - chr1_2:78327871-78327890 Msa0094900:intron 20.0%
!!! AATAGACTTAACATTCATTT+TGG - chr1_2:78327981-78328000 Msa0094900:intron 20.0%
!! ATTGATATTAACTTTCTTCA+GGG + chr1_2:78328009-78328028 None:intergenic 20.0%
!! AATTGATATTAACTTTCTTC+AGG + chr1_2:78328010-78328029 None:intergenic 20.0%
!!! ATTGTTGTAACATTTTTAGA+AGG + chr1_2:78328068-78328087 None:intergenic 20.0%
!!! ATTCATGTAATTTTCTACAA+TGG + chr1_2:78328132-78328151 None:intergenic 20.0%
!! TATGATCAATAAAAATTCAG+GGG + chr1_2:78328468-78328487 None:intergenic 20.0%
!! CTTATGATCAATAAAAATTC+AGG + chr1_2:78328470-78328489 None:intergenic 20.0%
!! GATAAAAAATAAGAAAGAGT+AGG - chr1_2:78329527-78329546 Msa0094900:intron 20.0%
!!! GTACAGATTTGTATTATTTT+GGG + chr1_2:78329611-78329630 None:intergenic 20.0%
!!! CAAAGAGATTTAAGTTATAT+AGG + chr1_2:78330372-78330391 None:intergenic 20.0%
!!! TTTTAGAGTAGATTATTGAA+AGG + chr1_2:78330861-78330880 None:intergenic 20.0%
!! GTAATAGTAACTATAGTAAA+TGG + chr1_2:78331225-78331244 None:intergenic 20.0%
!! TACTATAGTTACTATTACAA+TGG - chr1_2:78331227-78331246 Msa0094900:intron 20.0%
!!! AACATAATGACATTTTTATG+TGG - chr1_2:78331367-78331386 Msa0094900:intron 20.0%
!! TTGAGAACAAGTTATATATA+TGG - chr1_2:78331557-78331576 Msa0094900:five_prime_UTR 20.0%
!! AAGTTCTAATCACATGTTAA+TGG + chr1_2:78325998-78326017 None:intergenic 25.0%
!! TATTTTACAACTGGTAAGTT+GGG + chr1_2:78326052-78326071 None:intergenic 25.0%
!!! TTATTTTACAACTGGTAAGT+TGG + chr1_2:78326053-78326072 None:intergenic 25.0%
! TAGGAATTGTAAAGAAAAGA+AGG + chr1_2:78326221-78326240 None:intergenic 25.0%
! AAAGAAATTCAAATGATTGG+TGG - chr1_2:78326699-78326718 Msa0094900:intron 25.0%
!! AAGCTAGTTTATATAAGCTT+GGG - chr1_2:78326869-78326888 Msa0094900:CDS 25.0%
! TTTGTTCTTAGAACTTAGAA+TGG - chr1_2:78327111-78327130 Msa0094900:intron 25.0%
!!! ACAAATAACCATCATTTTTG+GGG + chr1_2:78327152-78327171 None:intergenic 25.0%
!!! CACAAATAACCATCATTTTT+GGG + chr1_2:78327153-78327172 None:intergenic 25.0%
!! ACACAAATAACCATCATTTT+TGG + chr1_2:78327154-78327173 None:intergenic 25.0%
! GTAATTGAGTAATAGAACAA+TGG + chr1_2:78327441-78327460 None:intergenic 25.0%
!!! GATGGTAGAAATTTTTCAAT+AGG + chr1_2:78327470-78327489 None:intergenic 25.0%
! TATAGTGTAAGATATACTTC+TGG + chr1_2:78327618-78327637 None:intergenic 25.0%
! ATTATATGAGTACATATTCG+GGG - chr1_2:78327644-78327663 Msa0094900:intron 25.0%
! TGCTATGTTAGTATTATTGA+CGG + chr1_2:78327670-78327689 None:intergenic 25.0%
!!! ATATTTTCATTTTGGCACAA+GGG + chr1_2:78327804-78327823 None:intergenic 25.0%
! ATGGTAATTGTTTAGGAATT+TGG - chr1_2:78327822-78327841 Msa0094900:intron 25.0%
!! TTTTACGCAAGAAAATACAT+TGG - chr1_2:78327904-78327923 Msa0094900:intron 25.0%
!! TGTTTAAAATAATGATCTCC+AGG - chr1_2:78327951-78327970 Msa0094900:intron 25.0%
!! TTAAGTCTATTCTTTTTACC+TGG + chr1_2:78327972-78327991 None:intergenic 25.0%
! ATATCAACTTTCAATGATTG+AGG + chr1_2:78328097-78328116 None:intergenic 25.0%
!! ATGTAATTTTCTACAATGGA+GGG + chr1_2:78328128-78328147 None:intergenic 25.0%
!!! AAGTCATTTTTCATGATTGA+GGG - chr1_2:78328192-78328211 Msa0094900:intron 25.0%
! TAGTAATGTAAATTACACTC+CGG + chr1_2:78328311-78328330 None:intergenic 25.0%
! TAAACGGTATTTGTGTATTT+AGG + chr1_2:78328687-78328706 None:intergenic 25.0%
!! GTGTATTTAGGTCTTTTAAA+CGG + chr1_2:78328703-78328722 None:intergenic 25.0%
! AAAGGTTTATTATAGGAAGA+AGG + chr1_2:78328750-78328769 None:intergenic 25.0%
! TATGAACATGAACAGATATT+TGG - chr1_2:78328885-78328904 Msa0094900:intron 25.0%
!!! GACAAAATCCTTTTTAGAAA+AGG - chr1_2:78329070-78329089 Msa0094900:intron 25.0%
!! GGTACAGATTTGTATTATTT+TGG + chr1_2:78329612-78329631 None:intergenic 25.0%
! AATTATCATGTATAGATAGG+AGG + chr1_2:78329658-78329677 None:intergenic 25.0%
! TCGAATTATCATGTATAGAT+AGG + chr1_2:78329661-78329680 None:intergenic 25.0%
!!! GCTAGGGAATTTTTAATTAA+CGG + chr1_2:78329692-78329711 None:intergenic 25.0%
!!! GTTTTGAAAATCAAACAATG+TGG + chr1_2:78329855-78329874 None:intergenic 25.0%
!!! AACTCTGTTAGTTTTTATCA+AGG - chr1_2:78329872-78329891 Msa0094900:intron 25.0%
! AATTTAACAGTTTCAGTTCT+CGG + chr1_2:78330023-78330042 None:intergenic 25.0%
! TAAAGCAATTGAAATTTGTG+TGG - chr1_2:78330049-78330068 Msa0094900:intron 25.0%
! GATATGTATATATCATAGTC+TGG - chr1_2:78330088-78330107 Msa0094900:intron 25.0%
! AGCTGTTTATCATCAAAAAA+AGG + chr1_2:78330128-78330147 None:intergenic 25.0%
! GCACTAACATCATTAAAATT+GGG + chr1_2:78330214-78330233 None:intergenic 25.0%
! TGCACTAACATCATTAAAAT+TGG + chr1_2:78330215-78330234 None:intergenic 25.0%
!!! TTTGTTTTATTGATGCTGAA+TGG + chr1_2:78330286-78330305 None:intergenic 25.0%
! TATAACTTAAATCTCTTTGC+AGG - chr1_2:78330373-78330392 Msa0094900:CDS 25.0%
! TAGAGTACGTGAAAAATATT+GGG + chr1_2:78330500-78330519 None:intergenic 25.0%
! ATAGAGTACGTGAAAAATAT+TGG + chr1_2:78330501-78330520 None:intergenic 25.0%
! ATATATATCATTTGGAGGTT+GGG + chr1_2:78330566-78330585 None:intergenic 25.0%
! TCAAGCTGATATATATCATT+TGG + chr1_2:78330574-78330593 None:intergenic 25.0%
! AATGATATATATCAGCTTGA+TGG - chr1_2:78330574-78330593 Msa0094900:intron 25.0%
! ATATTGAAGCTTCTTTATTC+CGG + chr1_2:78331477-78331496 None:intergenic 25.0%
! GAACAAGTTATATATATGGT+AGG - chr1_2:78331561-78331580 Msa0094900:five_prime_UTR 25.0%
! ATTTTACAACTGGTAAGTTG+GGG + chr1_2:78326051-78326070 None:intergenic 30.0%
AAAGAAGGAGAAGTAGAAAA+AGG + chr1_2:78326206-78326225 None:intergenic 30.0%
!!! TTATACAAGAGGCTGTTTTT+AGG - chr1_2:78326647-78326666 Msa0094900:intron 30.0%
! TTTCTTTTCATGTGACTGAA+AGG + chr1_2:78326686-78326705 None:intergenic 30.0%
TTTGGAGACTGCATAATTAA+GGG - chr1_2:78326771-78326790 Msa0094900:CDS 30.0%
! TTTTACAACCAAACAAAACG+AGG - chr1_2:78326824-78326843 Msa0094900:intron 30.0%
TTTACAACCAAACAAAACGA+GGG - chr1_2:78326825-78326844 Msa0094900:intron 30.0%
! CAAGCTAGTTTATATAAGCT+TGG - chr1_2:78326868-78326887 Msa0094900:CDS 30.0%
GCAACCTTTGTAACATTTAT+AGG - chr1_2:78327003-78327022 Msa0094900:CDS 30.0%
GTTGCCTATAAATGTTACAA+AGG + chr1_2:78327010-78327029 None:intergenic 30.0%
GTATGTATTGTTCATGCAAA+TGG - chr1_2:78327075-78327094 Msa0094900:CDS 30.0%
!! AAAGTATTGAACTTGCACTT+TGG - chr1_2:78327214-78327233 Msa0094900:intron 30.0%
!! AACATTTTGGTACTAGAAGT+TGG - chr1_2:78327260-78327279 Msa0094900:CDS 30.0%
AATGCATGTGAAATCATTGA+TGG + chr1_2:78327488-78327507 None:intergenic 30.0%
!! TATTTTCATTTTGGCACAAG+GGG + chr1_2:78327803-78327822 None:intergenic 30.0%
!! CATATTTTCATTTTGGCACA+AGG + chr1_2:78327805-78327824 None:intergenic 30.0%
CTTGTGCCAAAATGAAAATA+TGG - chr1_2:78327803-78327822 Msa0094900:intron 30.0%
!! ACATTTTTAGAAGGCCAAAT+TGG + chr1_2:78328059-78328078 None:intergenic 30.0%
! CATGTAATTTTCTACAATGG+AGG + chr1_2:78328129-78328148 None:intergenic 30.0%
!!! GAAGTCATTTTTCATGATTG+AGG - chr1_2:78328191-78328210 Msa0094900:intron 30.0%
ATTGATGTCACCTATATCTT+TGG - chr1_2:78328245-78328264 Msa0094900:intron 30.0%
TTATTGTCCTCCAAAGATAT+AGG + chr1_2:78328258-78328277 None:intergenic 30.0%
! TATCTTTGGAGGACAATAAT+AGG - chr1_2:78328259-78328278 Msa0094900:intron 30.0%
TGAAAATTGCTTAGCTAAAC+TGG + chr1_2:78328540-78328559 None:intergenic 30.0%
!! CCTTTTATAAAGAGAAGCAT+GGG + chr1_2:78328584-78328603 None:intergenic 30.0%
! ACCTTTTATAAAGAGAAGCA+TGG + chr1_2:78328585-78328604 None:intergenic 30.0%
TGCTTCTCTTTATAAAAGGT+TGG - chr1_2:78328585-78328604 Msa0094900:intron 30.0%
!! GGTTGTTATTTCTGTTTAGT+TGG + chr1_2:78328640-78328659 None:intergenic 30.0%
! TTACTGTTAGATCTTTTTGC+AGG + chr1_2:78328661-78328680 None:intergenic 30.0%
!! AGGCTCTAAAGGTTTATTAT+AGG + chr1_2:78328757-78328776 None:intergenic 30.0%
! TTTAAAATCAAACTGCTCAG+AGG + chr1_2:78328933-78328952 None:intergenic 30.0%
! AACACTAACCTACAAGTTTT+GGG + chr1_2:78329121-78329140 None:intergenic 30.0%
ACAGATATGATCAGAACAAT+TGG + chr1_2:78329190-78329209 None:intergenic 30.0%
AATTGTTCTGATCATATCTG+TGG - chr1_2:78329189-78329208 Msa0094900:intron 30.0%
AGAAAACCAAGATCCAAATT+GGG + chr1_2:78329224-78329243 None:intergenic 30.0%
AAGAAAACCAAGATCCAAAT+TGG + chr1_2:78329225-78329244 None:intergenic 30.0%
TCAAACCAATTGTTAGAAAC+CGG - chr1_2:78329463-78329482 Msa0094900:intron 30.0%
! ATTTTCCGGTTTCTAACAAT+TGG + chr1_2:78329471-78329490 None:intergenic 30.0%
!! TATTTTGGGTGAATAGACAA+TGG + chr1_2:78329597-78329616 None:intergenic 30.0%
AATGAGTTAGAGAAAGGATA+TGG + chr1_2:78329633-78329652 None:intergenic 30.0%
GTTAGTTAGGATATAGGATA+AGG + chr1_2:78329723-78329742 None:intergenic 30.0%
TAAGGAGTTAGTTAGGATAT+AGG + chr1_2:78329729-78329748 None:intergenic 30.0%
! AGTTTTTATCAAGGTTCTGT+TGG - chr1_2:78329881-78329900 Msa0094900:intron 30.0%
!! TCTGTTGGTTTATGTCAATA+TGG - chr1_2:78329896-78329915 Msa0094900:intron 30.0%
!! CTGTTGGTTTATGTCAATAT+GGG - chr1_2:78329897-78329916 Msa0094900:intron 30.0%
TCTGAAGAGATTAAATCTTC+TGG - chr1_2:78330169-78330188 Msa0094900:intron 30.0%
CAATGAAGAAGAAACAACAA+AGG + chr1_2:78330536-78330555 None:intergenic 30.0%
GATATATATCATTTGGAGGT+TGG + chr1_2:78330567-78330586 None:intergenic 30.0%
AGCTGATATATATCATTTGG+AGG + chr1_2:78330571-78330590 None:intergenic 30.0%
AATGTAGAAACTGATCCATT+TGG + chr1_2:78330703-78330722 None:intergenic 30.0%
AGTTTCTACATTGACAACAT+TGG - chr1_2:78330711-78330730 Msa0094900:intron 30.0%
AATTGTACCTCATTACATGA+AGG + chr1_2:78330941-78330960 None:intergenic 30.0%
ATGTAATGAGGTACAATTGA+AGG - chr1_2:78330943-78330962 Msa0094900:intron 30.0%
! ATTTGTTACATTGAACAGCT+TGG - chr1_2:78331124-78331143 Msa0094900:intron 30.0%
TTTAATACACAAACCTCAAC+TGG + chr1_2:78331160-78331179 None:intergenic 30.0%
CAGACTAGAAAGAAATTTGA+AGG + chr1_2:78331272-78331291 None:intergenic 30.0%
TATTGAAGCTTCTTTATTCC+GGG + chr1_2:78331476-78331495 None:intergenic 30.0%
TATTCAACACTCTTAAACTG+AGG - chr1_2:78331607-78331626 Msa0094900:five_prime_UTR 30.0%
!!! TGAGGTTATTTTTTCCCAAA+AGG - chr1_2:78331625-78331644 Msa0094900:five_prime_UTR 30.0%
!!! GAGGTTATTTTTTCCCAAAA+GGG - chr1_2:78331626-78331645 Msa0094900:five_prime_UTR 30.0%
! TTATCCTTATCTTCCCTTTT+GGG + chr1_2:78331642-78331661 None:intergenic 30.0%
! TTTATCCTTATCTTCCCTTT+TGG + chr1_2:78331643-78331662 None:intergenic 30.0%
TGTGATTAGAACTTTGACGA+TGG - chr1_2:78326004-78326023 Msa0094900:three_prime_UTR 35.0%
ATTAGAACTTTGACGATGGT+GGG - chr1_2:78326008-78326027 Msa0094900:three_prime_UTR 35.0%
!! GTTGACGGTTATTTTACAAC+TGG + chr1_2:78326061-78326080 None:intergenic 35.0%
AAAGAGAGAATGAAGGTTGA+CGG + chr1_2:78326076-78326095 None:intergenic 35.0%
TAATCCCTCTTCCAATTCAA+TGG - chr1_2:78326162-78326181 Msa0094900:three_prime_UTR 35.0%
GTTTGGAGACTGCATAATTA+AGG - chr1_2:78326770-78326789 Msa0094900:CDS 35.0%
GGTTTATCGTGTAAATGCTT+AGG - chr1_2:78326792-78326811 Msa0094900:intron 35.0%
TAAACACTTGTGTAAGTGCT+TGG + chr1_2:78326947-78326966 None:intergenic 35.0%
ACAAAATGACTCTCAACGAT+AGG + chr1_2:78327044-78327063 None:intergenic 35.0%
! TGTGTCATTAAACGTATCAC+AGG - chr1_2:78327169-78327188 Msa0094900:intron 35.0%
! GTTGAGCTTTCACAACATTT+TGG - chr1_2:78327247-78327266 Msa0094900:CDS 35.0%
!!! TTTTTTTGTCCTACTTCGGA+CGG - chr1_2:78327510-78327529 Msa0094900:CDS 35.0%
TGTTGATGTCATACTGTATG+TGG - chr1_2:78327562-78327581 Msa0094900:intron 35.0%
AGTGTATAGTGTAAACACTC+AGG - chr1_2:78327590-78327609 Msa0094900:intron 35.0%
CATTACATTAGCTAGCAAGA+GGG + chr1_2:78327721-78327740 None:intergenic 35.0%
CTCTTGCTAGCTAATGTAAT+GGG - chr1_2:78327720-78327739 Msa0094900:intron 35.0%
!! TAGCTAATGTAATGGGCATT+GGG - chr1_2:78327727-78327746 Msa0094900:intron 35.0%
AACAAAACAGGCAACAAACA+AGG + chr1_2:78327775-78327794 None:intergenic 35.0%
!! ATTTTCATTTTGGCACAAGG+GGG + chr1_2:78327802-78327821 None:intergenic 35.0%
TAAACCTGGACTTTCTTTGA+AGG - chr1_2:78328217-78328236 Msa0094900:intron 35.0%
AAAGCTTATGTTAGGATCTC+TGG - chr1_2:78328430-78328449 Msa0094900:intron 35.0%
CCCATGCTTCTCTTTATAAA+AGG - chr1_2:78328581-78328600 Msa0094900:intron 35.0%
GAAAATCAGTAAGTGTTTGC+TGG - chr1_2:78328799-78328818 Msa0094900:intron 35.0%
CCACAAGAACACATTTATCA+AGG + chr1_2:78329046-78329065 None:intergenic 35.0%
CCTTGATAAATGTGTTCTTG+TGG - chr1_2:78329043-78329062 Msa0094900:intron 35.0%
!! AGGCACAACCTTTTCTAAAA+AGG + chr1_2:78329081-78329100 None:intergenic 35.0%
! CAACACTAACCTACAAGTTT+TGG + chr1_2:78329122-78329141 None:intergenic 35.0%
ATGATCAGAACAATTGGAGA+GGG + chr1_2:78329184-78329203 None:intergenic 35.0%
TATGATCAGAACAATTGGAG+AGG + chr1_2:78329185-78329204 None:intergenic 35.0%
GTGGAAAATGATTCCCAATT+TGG - chr1_2:78329208-78329227 Msa0094900:intron 35.0%
ATGATTCCCAATTTGGATCT+TGG - chr1_2:78329215-78329234 Msa0094900:intron 35.0%
TTACGTCCATAAGTTGCATT+GGG + chr1_2:78329299-78329318 None:intergenic 35.0%
ATTACGTCCATAAGTTGCAT+TGG + chr1_2:78329300-78329319 None:intergenic 35.0%
GAGGATAATGAGTTAGAGAA+AGG + chr1_2:78329639-78329658 None:intergenic 35.0%
AGTTAGGATATAGGATAAGG+AGG + chr1_2:78329720-78329739 None:intergenic 35.0%
CATAGGATAAGGAGTTAGTT+AGG + chr1_2:78329736-78329755 None:intergenic 35.0%
ATCTGTTAGGACATAGGATA+AGG + chr1_2:78329747-78329766 None:intergenic 35.0%
CTATGTCCTAACAGATTCAT+GGG - chr1_2:78329751-78329770 Msa0094900:intron 35.0%
TATGTCCTAACAGATTCATG+GGG - chr1_2:78329752-78329771 Msa0094900:intron 35.0%
GAAAATCAAACAATGTGGAC+TGG + chr1_2:78329850-78329869 None:intergenic 35.0%
TGTCAATATGGGATTCTATG+AGG - chr1_2:78329908-78329927 Msa0094900:intron 35.0%
CTCATATGTTCATGCATTCA+TGG - chr1_2:78329937-78329956 Msa0094900:intron 35.0%
! GATGATAAACAGCTGTTTCA+AGG - chr1_2:78330134-78330153 Msa0094900:intron 35.0%
AACTTAAATCTCTTTGCAGG+TGG - chr1_2:78330376-78330395 Msa0094900:CDS 35.0%
GTATTTATACTTACAGGAGC+AGG + chr1_2:78330661-78330680 None:intergenic 35.0%
! GAAACTGATCCATTTGGTTT+AGG + chr1_2:78330697-78330716 None:intergenic 35.0%
! ATAGACAATGAAGAAGGTAC+TGG + chr1_2:78330748-78330767 None:intergenic 35.0%
TAGAAAAAGCTGCAGATGAA+GGG - chr1_2:78330779-78330798 Msa0094900:intron 35.0%
GGTGATAATTCATTCTCCAA+CGG - chr1_2:78330804-78330823 Msa0094900:intron 35.0%
!!! TTGTTTTAGAGTCTTACCGT+TGG + chr1_2:78330823-78330842 None:intergenic 35.0%
GATTTCTCAACATACACATG+AGG + chr1_2:78331033-78331052 None:intergenic 35.0%
TTGACAGATGCAAAAAGTTG+AGG - chr1_2:78331090-78331109 Msa0094900:intron 35.0%
! ATCAAGATTCTAAGAGAGGA+TGG - chr1_2:78331309-78331328 Msa0094900:intron 35.0%
TTCTTTATTCCGGGAAATGA+CGG + chr1_2:78331467-78331486 None:intergenic 35.0%
!! TAAGAGTGTTGAATACTGCA+GGG + chr1_2:78331602-78331621 None:intergenic 35.0%
!! TTAAGAGTGTTGAATACTGC+AGG + chr1_2:78331603-78331622 None:intergenic 35.0%
! TTTTCCCAAAAGGGAAGATA+AGG - chr1_2:78331635-78331654 Msa0094900:five_prime_UTR 35.0%
GATTAGAACTTTGACGATGG+TGG - chr1_2:78326007-78326026 Msa0094900:three_prime_UTR 40.0%
GAGAGAGAAAGAGAGAATGA+AGG + chr1_2:78326083-78326102 None:intergenic 40.0%
GAAGCCATTGAATTGGAAGA+GGG + chr1_2:78326169-78326188 None:intergenic 40.0%
TGAAGCCATTGAATTGGAAG+AGG + chr1_2:78326170-78326189 None:intergenic 40.0%
GTGAGATGAAGCCATTGAAT+TGG + chr1_2:78326176-78326195 None:intergenic 40.0%
GCATCAACACTTCTGATTGA+TGG + chr1_2:78326483-78326502 None:intergenic 40.0%
AATCTCCAAACACAAACCCT+AGG - chr1_2:78326732-78326751 Msa0094900:CDS 40.0%
ATCTCCAAACACAAACCCTA+GGG - chr1_2:78326733-78326752 Msa0094900:CDS 40.0%
ACAAACCCTAGGGATCATTA+AGG - chr1_2:78326743-78326762 Msa0094900:CDS 40.0%
AACCAAACAAAACGAGGGAA+AGG - chr1_2:78326830-78326849 Msa0094900:intron 40.0%
!! AACCTTTCCCTCGTTTTGTT+TGG + chr1_2:78326835-78326854 None:intergenic 40.0%
TGTTTGGACCCCAAAAATGA+TGG - chr1_2:78327141-78327160 Msa0094900:intron 40.0%
AAACGTATCACAGGTAGCTT+AGG - chr1_2:78327178-78327197 Msa0094900:intron 40.0%
AACGTATCACAGGTAGCTTA+GGG - chr1_2:78327179-78327198 Msa0094900:intron 40.0%
GTACTAGAAGTTGGATCAGT+AGG - chr1_2:78327269-78327288 Msa0094900:CDS 40.0%
! TGCTGATTGGTCATTAGATG+GGG + chr1_2:78327350-78327369 None:intergenic 40.0%
! CTGCTGATTGGTCATTAGAT+GGG + chr1_2:78327351-78327370 None:intergenic 40.0%
! TCTGCTGATTGGTCATTAGA+TGG + chr1_2:78327352-78327371 None:intergenic 40.0%
TACATTGGATCTCTGCTGAT+TGG + chr1_2:78327363-78327382 None:intergenic 40.0%
! GGACGGAAATGATGTGTTTT+AGG - chr1_2:78327527-78327546 Msa0094900:intron 40.0%
! TAAGGCCAGGGATTGATAAT+TGG + chr1_2:78327695-78327714 None:intergenic 40.0%
CCATTACATTAGCTAGCAAG+AGG + chr1_2:78327722-78327741 None:intergenic 40.0%
CCTCTTGCTAGCTAATGTAA+TGG - chr1_2:78327719-78327738 Msa0094900:intron 40.0%
!! CTAGCTAATGTAATGGGCAT+TGG - chr1_2:78327726-78327745 Msa0094900:intron 40.0%
AATCCCTCAATCACAGAAAG+CGG - chr1_2:78328031-78328050 Msa0094900:intron 40.0%
TCCCACTTGTGATTCGTAAA+CGG - chr1_2:78328156-78328175 Msa0094900:intron 40.0%
TCCGTTTACGAATCACAAGT+GGG + chr1_2:78328160-78328179 None:intergenic 40.0%
TTCCGTTTACGAATCACAAG+TGG + chr1_2:78328161-78328180 None:intergenic 40.0%
TTGTCCTTCAAAGAAAGTCC+AGG + chr1_2:78328224-78328243 None:intergenic 40.0%
GATGTCACCTATATCTTTGG+AGG - chr1_2:78328248-78328267 Msa0094900:intron 40.0%
TGAATCTCTTCCTAGAGAGA+AGG + chr1_2:78328777-78328796 None:intergenic 40.0%
! CTCGACAATTGGTTCATCTT+CGG - chr1_2:78328852-78328871 Msa0094900:intron 40.0%
CACCAAGAATCTTTGTTCTC+GGG + chr1_2:78329016-78329035 None:intergenic 40.0%
CCACCAAGAATCTTTGTTCT+CGG + chr1_2:78329017-78329036 None:intergenic 40.0%
! TTTGGGTGAGTTGAACAAGT+TGG + chr1_2:78329104-78329123 None:intergenic 40.0%
TCAACTCACCCAAAACTTGT+AGG - chr1_2:78329110-78329129 Msa0094900:intron 40.0%
GCTAAGGCTGAAAAGTTCTT+TGG + chr1_2:78329337-78329356 None:intergenic 40.0%
!! TAACAATTGGTTTGACCTGC+TGG + chr1_2:78329458-78329477 None:intergenic 40.0%
GTAGAATAGCAGATCCTTAG+AGG + chr1_2:78329567-78329586 None:intergenic 40.0%
CCATGAATCTGTTAGGACAT+AGG + chr1_2:78329753-78329772 None:intergenic 40.0%
CCTATGTCCTAACAGATTCA+TGG - chr1_2:78329750-78329769 Msa0094900:intron 40.0%
ATGTCCTAACAGATTCATGG+GGG - chr1_2:78329753-78329772 Msa0094900:intron 40.0%
TGCAAACTAGTGTATGCAGT+TGG + chr1_2:78329788-78329807 None:intergenic 40.0%
GGTCACTAACTTATGTGAGA+CGG - chr1_2:78330406-78330425 Msa0094900:CDS 40.0%
TTATGTGAGACGGCATCAAT+TGG - chr1_2:78330416-78330435 Msa0094900:CDS 40.0%
GCGGGTGTATTTATACTTAC+AGG + chr1_2:78330667-78330686 None:intergenic 40.0%
! ATTTGGTTTAGGTGCTTCTG+CGG + chr1_2:78330686-78330705 None:intergenic 40.0%
ACCTTCTTCATTGTCTATCG+AGG - chr1_2:78330750-78330769 Msa0094900:intron 40.0%
CCTTCTTCATTGTCTATCGA+GGG - chr1_2:78330751-78330770 Msa0094900:intron 40.0%
!! CTTCATCTGCAGCTTTTTCT+AGG + chr1_2:78330780-78330799 None:intergenic 40.0%
CTAGAAAAAGCTGCAGATGA+AGG - chr1_2:78330778-78330797 Msa0094900:intron 40.0%
!! ATCTACTCTAAAACCAGAGC+AGG - chr1_2:78330868-78330887 Msa0094900:intron 40.0%
TTGGCATCTTCAGAAGATCT+CGG - chr1_2:78330891-78330910 Msa0094900:intron 40.0%
AGAAGATCTCGGACGATAAA+GGG - chr1_2:78330902-78330921 Msa0094900:intron 40.0%
TGTACCTCATTACATGAAGG+AGG + chr1_2:78330938-78330957 None:intergenic 40.0%
!! GGCCTTTCCTTCTCATTTTT+CGG - chr1_2:78330964-78330983 Msa0094900:intron 40.0%
!! GCCTTTCCTTCTCATTTTTC+GGG - chr1_2:78330965-78330984 Msa0094900:intron 40.0%
!!! TTTCCTTCTCATTTTTCGGG+CGG - chr1_2:78330968-78330987 Msa0094900:intron 40.0%
CAGATGCAAAAAGTTGAGGA+CGG - chr1_2:78331094-78331113 Msa0094900:intron 40.0%
AGATGCAAAAAGTTGAGGAC+GGG - chr1_2:78331095-78331114 Msa0094900:intron 40.0%
TGTTACATTGAACAGCTTGG+TGG - chr1_2:78331127-78331146 Msa0094900:intron 40.0%
GTTACATTGAACAGCTTGGT+GGG - chr1_2:78331128-78331147 Msa0094900:intron 40.0%
GATGAGAATCTGAAAGAGCT+AGG + chr1_2:78331190-78331209 None:intergenic 40.0%
! GGTCATCAAGATTCTAAGAG+AGG - chr1_2:78331305-78331324 Msa0094900:intron 40.0%
! AAGATTCTAAGAGAGGATGG+CGG - chr1_2:78331312-78331331 Msa0094900:intron 40.0%
AAAGAATGAGAATGGAGGGT+TGG + chr1_2:78331669-78331688 None:intergenic 40.0%
! GCGGGAGCTTTTTAATGCAT+CGG + chr1_2:78326556-78326575 None:intergenic 45.0%
AAAATAGTGAGACCCCTTCC+CGG + chr1_2:78326590-78326609 None:intergenic 45.0%
TGATCCCTAGGGTTTGTGTT+TGG + chr1_2:78326740-78326759 None:intergenic 45.0%
AACCCTAGGGATCATTAAGG+AGG - chr1_2:78326746-78326765 Msa0094900:CDS 45.0%
CACCTCCTTAATGATCCCTA+GGG + chr1_2:78326751-78326770 None:intergenic 45.0%
ACACCTCCTTAATGATCCCT+AGG + chr1_2:78326752-78326771 None:intergenic 45.0%
!! GGGATCATTAAGGAGGTGTT+TGG - chr1_2:78326753-78326772 Msa0094900:CDS 45.0%
GTCACTGCAGTACACTAGAT+TGG - chr1_2:78327294-78327313 Msa0094900:intron 45.0%
ACATCATTTCCGTCCGAAGT+AGG + chr1_2:78327522-78327541 None:intergenic 45.0%
GCATGCCAATTATCAATCCC+TGG - chr1_2:78327687-78327706 Msa0094900:intron 45.0%
TAGCTAGCAAGAGGGATGTA+AGG + chr1_2:78327713-78327732 None:intergenic 45.0%
ACAAGGCTAGGTCCTTAGAA+GGG + chr1_2:78327758-78327777 None:intergenic 45.0%
AACAAGGCTAGGTCCTTAGA+AGG + chr1_2:78327759-78327778 None:intergenic 45.0%
AACAGGCAACAAACAAGGCT+AGG + chr1_2:78327770-78327789 None:intergenic 45.0%
CAAGGGGGAAGAAACAAAAC+AGG + chr1_2:78327787-78327806 None:intergenic 45.0%
CATGATTGAGGGACTAAACC+TGG - chr1_2:78328203-78328222 Msa0094900:intron 45.0%
AGCACTGTCTTCTTTCACAC+TGG - chr1_2:78328509-78328528 Msa0094900:intron 45.0%
!! ACCTTTAGAGCCTTCTCTCT+AGG - chr1_2:78328764-78328783 Msa0094900:intron 45.0%
! TCCTAGAGAGAAGGCTCTAA+AGG + chr1_2:78328768-78328787 None:intergenic 45.0%
ATCGAGGTTGTTATCGAGGT+CGG + chr1_2:78328832-78328851 None:intergenic 45.0%
ACAACCTCGATCTCGACAAT+TGG - chr1_2:78328841-78328860 Msa0094900:intron 45.0%
TGAACCAATTGTCGAGATCG+AGG + chr1_2:78328848-78328867 None:intergenic 45.0%
! ATGAGACTAGTCCAAGGGTT+TGG + chr1_2:78328978-78328997 None:intergenic 45.0%
TGTTCTCGGGCAAGAAAGTT+GGG + chr1_2:78329003-78329022 None:intergenic 45.0%
TTGTTCTCGGGCAAGAAAGT+TGG + chr1_2:78329004-78329023 None:intergenic 45.0%
TGCCCGAGAACAAAGATTCT+TGG - chr1_2:78329011-78329030 Msa0094900:intron 45.0%
CCGAGAACAAAGATTCTTGG+TGG - chr1_2:78329014-78329033 Msa0094900:intron 45.0%
TTGTTACAGGGGATCGACAA+TGG + chr1_2:78329152-78329171 None:intergenic 45.0%
TGAACGCCCAATGCAACTTA+TGG - chr1_2:78329290-78329309 Msa0094900:intron 45.0%
CCTTAGCAATCCAACCAACA+GGG - chr1_2:78329350-78329369 Msa0094900:intron 45.0%
GGAGGACATGTGAGCTAAAA+GGG + chr1_2:78329404-78329423 None:intergenic 45.0%
AGAGATCTCTCTCTCCTCTA+AGG - chr1_2:78329550-78329569 Msa0094900:intron 45.0%
! ACAGCTGTTTCAAGGTCAGA+AGG - chr1_2:78330142-78330161 Msa0094900:intron 45.0%
CTCTTTGCAGGTGGAATTCT+TGG - chr1_2:78330385-78330404 Msa0094900:CDS 45.0%
ATTTCACCTGCGTGTAGTGA+GGG - chr1_2:78330597-78330616 Msa0094900:intron 45.0%
CTTACAGGAGCAGGAATTGA+AGG + chr1_2:78330652-78330671 None:intergenic 45.0%
! TTTGGTTTAGGTGCTTCTGC+GGG + chr1_2:78330685-78330704 None:intergenic 45.0%
!! GCAGAAGCACCTAAACCAAA+TGG - chr1_2:78330685-78330704 Msa0094900:intron 45.0%
!! AGAAGGTACTGGTTTCGAGA+TGG + chr1_2:78330737-78330756 None:intergenic 45.0%
CCCTCGATAGACAATGAAGA+AGG + chr1_2:78330754-78330773 None:intergenic 45.0%
AAAAGCTGCAGATGAAGGGT+TGG - chr1_2:78330783-78330802 Msa0094900:intron 45.0%
!! ACTCTAAAACCAGAGCAGGT+TGG - chr1_2:78330872-78330891 Msa0094900:intron 45.0%
CAGAAGATCTCGGACGATAA+AGG - chr1_2:78330901-78330920 Msa0094900:intron 45.0%
TGCTCCTCCTTCATGTAATG+AGG - chr1_2:78330931-78330950 Msa0094900:intron 45.0%
GCCCGAAAAATGAGAAGGAA+AGG + chr1_2:78330969-78330988 None:intergenic 45.0%
! TCTTTCTAGTCTGACGTGTC+CGG - chr1_2:78331279-78331298 Msa0094900:intron 45.0%
! TAGAATCTTGATGACCTCCC+CGG + chr1_2:78331301-78331320 None:intergenic 45.0%
GTGTTTGTGACAGATCCAGT+TGG - chr1_2:78331413-78331432 Msa0094900:intron 45.0%
GTGACAGATCCAGTTGGTTA+TGG - chr1_2:78331419-78331438 Msa0094900:intron 45.0%
AGTGCATCACCATAACCAAC+TGG + chr1_2:78331431-78331450 None:intergenic 45.0%
GCAATATTGCCGTCATTTCC+CGG - chr1_2:78331455-78331474 Msa0094900:intron 45.0%
!!! TTGTTTTATATTATTATTTT+TGG - chr1_2:78326362-78326381 Msa0094900:CDS 5.0%
!!! TGTTTTATATTATTATTTTT+GGG - chr1_2:78326363-78326382 Msa0094900:CDS 5.0%
GTTGGGGACTTGGATTGCTT+TGG + chr1_2:78326035-78326054 None:intergenic 50.0%
! CAACTGGTAAGTTGGGGACT+TGG + chr1_2:78326045-78326064 None:intergenic 50.0%
TAAAAAGCTCCCGCATACGC+AGG - chr1_2:78326562-78326581 Msa0094900:CDS 50.0%
! GGGAAGGGGTCTCACTATTT+TGG - chr1_2:78326589-78326608 Msa0094900:intron 50.0%
CATTGGGCACAACCCTTCTA+AGG - chr1_2:78327743-78327762 Msa0094900:intron 50.0%
!! GTGCCGCTTTCTGTGATTGA+GGG + chr1_2:78328037-78328056 None:intergenic 50.0%
CACAGAAAGCGGCACCAATT+TGG - chr1_2:78328042-78328061 Msa0094900:intron 50.0%
CGAGATCGAGGTTGTTATCG+AGG + chr1_2:78328836-78328855 None:intergenic 50.0%
CTGCTCAGAGGAGACAATCA+TGG + chr1_2:78328921-78328940 None:intergenic 50.0%
!! CCAAGGGTTTGGTGTCAACA+AGG + chr1_2:78328967-78328986 None:intergenic 50.0%
CCTTGTTGACACCAAACCCT+TGG - chr1_2:78328964-78328983 Msa0094900:intron 50.0%
! GGGTGATGAGACTAGTCCAA+GGG + chr1_2:78328983-78329002 None:intergenic 50.0%
! TGGGTGATGAGACTAGTCCA+AGG + chr1_2:78328984-78329003 None:intergenic 50.0%
! GGGTGAGTTGAACAAGTTGG+AGG + chr1_2:78329101-78329120 None:intergenic 50.0%
TACAGGGGATCGACAATGGA+GGG + chr1_2:78329148-78329167 None:intergenic 50.0%
TTACAGGGGATCGACAATGG+AGG + chr1_2:78329149-78329168 None:intergenic 50.0%
GGAAGCAGTGGTTGTTACAG+GGG + chr1_2:78329163-78329182 None:intergenic 50.0%
GGGAAGCAGTGGTTGTTACA+GGG + chr1_2:78329164-78329183 None:intergenic 50.0%
AGGGAAGCAGTGGTTGTTAC+AGG + chr1_2:78329165-78329184 None:intergenic 50.0%
ACAATTGGAGAGGGAAGCAG+TGG + chr1_2:78329175-78329194 None:intergenic 50.0%
GCCTTAGCAATCCAACCAAC+AGG - chr1_2:78329349-78329368 Msa0094900:intron 50.0%
! CCCTGTTGGTTGGATTGCTA+AGG + chr1_2:78329353-78329372 None:intergenic 50.0%
TAGCGCTGCCAGTACTTAAC+GGG + chr1_2:78329381-78329400 None:intergenic 50.0%
GTAGCGCTGCCAGTACTTAA+CGG + chr1_2:78329382-78329401 None:intergenic 50.0%
GGGAGGACATGTGAGCTAAA+AGG + chr1_2:78329405-78329424 None:intergenic 50.0%
TTTGACCTGCTGGATCTTCG+AGG + chr1_2:78329448-78329467 None:intergenic 50.0%
GGATAAGGAGGAGCTAGCTA+GGG + chr1_2:78329708-78329727 None:intergenic 50.0%
AGGATAAGGAGGAGCTAGCT+AGG + chr1_2:78329709-78329728 None:intergenic 50.0%
GAAGCCCCCATGAATCTGTT+AGG + chr1_2:78329760-78329779 None:intergenic 50.0%
! GCTGTTTCAAGGTCAGAAGG+TGG - chr1_2:78330145-78330164 Msa0094900:intron 50.0%
TCATTTGGAGGTTGGGCAGA+TGG + chr1_2:78330559-78330578 None:intergenic 50.0%
GATTTCACCTGCGTGTAGTG+AGG - chr1_2:78330596-78330615 Msa0094900:intron 50.0%
TCAAATCCCTCACTACACGC+AGG + chr1_2:78330606-78330625 None:intergenic 50.0%
ACAGGAGCAGGAATTGAAGG+AGG + chr1_2:78330649-78330668 None:intergenic 50.0%
TGACCGCCCGAAAAATGAGA+AGG + chr1_2:78330974-78330993 None:intergenic 50.0%
! CTTTCTAGTCTGACGTGTCC+GGG - chr1_2:78331280-78331299 Msa0094900:intron 50.0%
! TTTCTAGTCTGACGTGTCCG+GGG - chr1_2:78331281-78331300 Msa0094900:intron 50.0%
! AAGAGAGGATGGCGGTTAGT+TGG - chr1_2:78331320-78331339 Msa0094900:intron 50.0%
GCGTGTCTAGTGACCAACAC+GGG + chr1_2:78326461-78326480 None:intergenic 55.0%
GGCGTGTCTAGTGACCAACA+CGG + chr1_2:78326462-78326481 None:intergenic 55.0%
GCAAGAGGGATGTAAGGCCA+GGG + chr1_2:78327707-78327726 None:intergenic 55.0%
AGCAAGAGGGATGTAAGGCC+AGG + chr1_2:78327708-78327727 None:intergenic 55.0%
!! GGTGCCGCTTTCTGTGATTG+AGG + chr1_2:78328038-78328057 None:intergenic 55.0%
GCATTGGGCGTTCATGAGCA+CGG + chr1_2:78329284-78329303 None:intergenic 55.0%
CTGCCAGTACTTAACGGGAC+AGG + chr1_2:78329376-78329395 None:intergenic 55.0%
AGAGTCAGCAATGCCGGAGT+GGG + chr1_2:78329425-78329444 None:intergenic 55.0%
TCGAGGAGAGTCAGCAATGC+CGG + chr1_2:78329431-78329450 None:intergenic 55.0%
ACTCTCCTCGAAGATCCAGC+AGG - chr1_2:78329440-78329459 Msa0094900:intron 55.0%
CTGAAGATGCCAACCTGCTC+TGG + chr1_2:78330884-78330903 None:intergenic 55.0%
! CGTGTCGATGTCACCCGTGT+TGG - chr1_2:78326445-78326464 Msa0094900:intron 60.0%
TTCCCGGAACCTGCGTATGC+GGG + chr1_2:78326574-78326593 None:intergenic 60.0%
CTTCCCGGAACCTGCGTATG+CGG + chr1_2:78326575-78326594 None:intergenic 60.0%
GCATACGCAGGTTCCGGGAA+GGG - chr1_2:78326574-78326593 Msa0094900:intron 60.0%
CATACGCAGGTTCCGGGAAG+GGG - chr1_2:78326575-78326594 Msa0094900:intron 60.0%
CTTAACGGGACAGGCCCTGT+TGG + chr1_2:78329367-78329386 None:intergenic 60.0%
GGGCCTGTCCCGTTAAGTAC+TGG - chr1_2:78329370-78329389 Msa0094900:intron 60.0%
GCTCACATGTCCTCCCACTC+CGG - chr1_2:78329409-78329428 Msa0094900:intron 60.0%
GAGAGTCAGCAATGCCGGAG+TGG + chr1_2:78329426-78329445 None:intergenic 60.0%
! TGGTGGGCAGCTACCAGTTG+AGG - chr1_2:78331144-78331163 Msa0094900:intron 60.0%
GCTCCCGCATACGCAGGTTC+CGG - chr1_2:78326568-78326587 Msa0094900:intron 65.0%
CTCCCGCATACGCAGGTTCC+GGG - chr1_2:78326569-78326588 Msa0094900:intron 65.0%
CGCATACGCAGGTTCCGGGA+AGG - chr1_2:78326573-78326592 Msa0094900:intron 65.0%
ACGGGACAGGCCCTGTTGGT+TGG + chr1_2:78329363-78329382 None:intergenic 65.0%
GTCAGCAATGCCGGAGTGGG+AGG + chr1_2:78329422-78329441 None:intergenic 65.0%
CTAGTCTGACGTGTCCGGGG+AGG - chr1_2:78331284-78331303 Msa0094900:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78325994 78331689 78325994 ID=Msa0094900;Name=Msa0094900
chr1_2 mRNA 78325994 78331689 78325994 ID=Msa0094900-mRNA-1;Parent=Msa0094900;Name=Msa0094900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=187|1|1|1|0.75|0.88|9|190|277
chr1_2 exon 78325994 78326257 78325994 ID=Msa0094900-mRNA-1:exon:27945;Parent=Msa0094900-mRNA-1
chr1_2 exon 78326350 78326395 78326350 ID=Msa0094900-mRNA-1:exon:27944;Parent=Msa0094900-mRNA-1
chr1_2 exon 78326518 78326586 78326518 ID=Msa0094900-mRNA-1:exon:27943;Parent=Msa0094900-mRNA-1
chr1_2 exon 78326731 78326793 78326731 ID=Msa0094900-mRNA-1:exon:27942;Parent=Msa0094900-mRNA-1
chr1_2 exon 78326858 78327094 78326858 ID=Msa0094900-mRNA-1:exon:27941;Parent=Msa0094900-mRNA-1
chr1_2 exon 78327229 78327288 78327229 ID=Msa0094900-mRNA-1:exon:27940;Parent=Msa0094900-mRNA-1
chr1_2 exon 78327458 78327537 78327458 ID=Msa0094900-mRNA-1:exon:27939;Parent=Msa0094900-mRNA-1
chr1_2 exon 78330304 78330492 78330304 ID=Msa0094900-mRNA-1:exon:27938;Parent=Msa0094900-mRNA-1
chr1_2 exon 78331487 78331689 78331487 ID=Msa0094900-mRNA-1:exon:27937;Parent=Msa0094900-mRNA-1
chr1_2 five_prime_UTR 78331503 78331689 78331503 ID=Msa0094900-mRNA-1:five_prime_utr;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78331487 78331502 78331487 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78330304 78330492 78330304 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78327458 78327537 78327458 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78327229 78327288 78327229 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78326858 78327094 78326858 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78326731 78326793 78326731 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78326518 78326586 78326518 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78326350 78326395 78326350 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 CDS 78326184 78326257 78326184 ID=Msa0094900-mRNA-1:cds;Parent=Msa0094900-mRNA-1
chr1_2 three_prime_UTR 78325994 78326183 78325994 ID=Msa0094900-mRNA-1:three_prime_utr;Parent=Msa0094900-mRNA-1
Gene Sequence

>Msa0094900

ATGGCTTCATCTCACTGTAGCTTAGGGACACAAAATGTCAAAGTATTGAACTTGCACTTTGGTCAAGAAAGAGTTGAGCTTTCACAACATTTTGGTACTAGAAGTTGGATCAGTAGGAAGTCACTGCAGTACACTAGATTGGTTGCGTCAAGACAGACAGTTAGATCTTTAACCCCATCTAATGACCAATCAGCAGAGATCCAATCTGTTTCAAGGTCAGAAGGTGGTTCTGAAGAGATTAAATCTTCTGGTTTGACAAGTGAACTGTTTCCCAATTTTAATGATGTGGAATTCTTGGTCACTAACTTATGTGAGACGGCATCAATTGGAGAGCTAGAATTAAAACTTGATGGATTTCACCTGCGTGTAGTGAGGGATTTGACTGAAAAATCTAAAACACTTCCTCCTTCAATTCCTGCTCCTGTAAGTATAAATACACCCGCAGAAGCACCTAAACCAAATGGATCAGTTTCTACATTGACAACATTGGCCATCTCGAAACCAGTACCTTCTTCATTGTCTATCGAGGGATTCCTAGAAAAAGCTGCAGATGAAGGGTTGGTGATAATTCATTCTCCAACGGTTGGCATCTTCAGAAGATCTCGGACGATAAAGGGAAAACGTGCTCCTCCTTCATGTAATGAGATGCAAAAAGTTGAGGACGGGAAAGTGATTTGTTACATTGAACAGCTTGGTGGGCAGCTACCAGTTGAGTCTGACGTGTCCGGGGAGGTCATCAAGATTCTAAGAGAGGATGGCGATCCAGTTGGTTATGGTGATGCACTTATAGCAATATTGCCGTCATTTCCCGGAATAAAGAAGCTTCAATATTGA

Protein sequence

>Msa0094900

MASSHCSLGTQNVKVLNLHFGQERVELSQHFGTRSWISRKSLQYTRLVASRQTVRSLTPSNDQSAEIQSVSRSEGGSEEIKSSGLTSELFPNFNDVEFLVTNLCETASIGELELKLDGFHLRVVRDLTEKSKTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPVPSSLSIEGFLEKAADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCNEMQKVEDGKVICYIEQLGGQLPVESDVSGEVIKILREDGDPVGYGDALIAILPSFPGIKKLQY*