AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519080 MtrunA17_Chr3g0131561 97.753 267 6 0 1 267 1 267 0.0 548
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519080 AT5G51020.1 74.721 269 66 1 1 267 1 269 2.52e-154 431

Find 117 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATAACTATTTCAATATT+AGG 0.173231 3_4:-71025132 Msa0519080:intron
ACATCACATTTCAACTCTTT+TGG 0.197133 3_4:+71024639 None:intergenic
ACATTCTTATTGAGAATTCT+AGG 0.223452 3_4:+71025600 None:intergenic
TTAATATTCCTAGCATATTT+AGG 0.228788 3_4:-71021793 Msa0519080:three_prime_UTR
CTATCAATACTAAGCTTCTT+AGG 0.241391 3_4:+71021741 None:intergenic
CTGAAAATTACCCATGAATT+AGG 0.256321 3_4:+71022423 None:intergenic
TACTGTGATTTGCAGGATAT+TGG 0.259019 3_4:-71022531 Msa0519080:intron
TAATTCTGAGATTTGTCTTA+TGG 0.266833 3_4:-71021673 Msa0519080:three_prime_UTR
CTAATATTGAAATAGTTATC+AGG 0.268130 3_4:+71025133 None:intergenic
TTGTAGCCGCCCTCGCTATT+TGG 0.279768 3_4:-71025542 Msa0519080:five_prime_UTR
CTATCCATGGGTGGTGGAGG+GGG 0.279858 3_4:+71022025 None:intergenic
AGTGGCTGAATTACACATTA+TGG 0.303537 3_4:+71021953 None:intergenic
CTTACCCCAATGACTTCTTC+TGG 0.312832 3_4:+71023690 None:intergenic
CCGGAGGATTTCCTAATTCA+TGG 0.335715 3_4:-71022434 Msa0519080:CDS
GGTTGTGGGCGCTGATCCTT+TGG 0.340420 3_4:+71023711 None:intergenic
TCTATCCATGGGTGGTGGAG+GGG 0.351946 3_4:+71022024 None:intergenic
GTTGTATGTTAGTTTCGTAT+TGG 0.367128 3_4:+71025625 None:intergenic
CTTCTATCCATGGGTGGTGG+AGG 0.377445 3_4:+71022022 None:intergenic
ACGATTCCATCCATTGGAAT+TGG 0.380648 3_4:+71025390 None:intergenic
CCATCCATTGGAATTGGAAT+CGG 0.393390 3_4:+71025396 None:intergenic
ATTGGAATTGGAATCGGATT+CGG 0.396683 3_4:+71025402 None:intergenic
CAATGACTTCTTCTGGTTGT+GGG 0.400932 3_4:+71023697 None:intergenic
CGAAAATGTATCATTAAAAC+AGG 0.408347 3_4:+71022060 None:intergenic
CCAATGACTTCTTCTGGTTG+TGG 0.410970 3_4:+71023696 None:intergenic
GTCTCTGGAAGCTTGGTCCT+TGG 0.416809 3_4:+71025156 None:intergenic
TTCTATCCATGGGTGGTGGA+GGG 0.418781 3_4:+71022023 None:intergenic
TATCCATGGGTGGTGGAGGG+GGG 0.424893 3_4:+71022026 None:intergenic
TGAGATACACACCTGGGATC+GGG 0.428241 3_4:-71022277 Msa0519080:CDS
ATTGAGTGACTAAACGAGTA+TGG 0.431325 3_4:+71025281 None:intergenic
CACAACCAGAAGAAGTCATT+GGG 0.431463 3_4:-71023695 Msa0519080:CDS
CCAGCTGCTGAGCTAGTTGA+TGG 0.433217 3_4:-71025003 Msa0519080:CDS
GCTGGATTCTCCCTCATCTC+TGG 0.443322 3_4:-71025697 Msa0519080:five_prime_UTR
GAAATAGTTATCAGGGTCTC+TGG 0.446405 3_4:+71025141 None:intergenic
GTATTCCTCCATGTCTCTGA+TGG 0.450638 3_4:+71023752 None:intergenic
CCACAACCAGAAGAAGTCAT+TGG 0.455535 3_4:-71023696 Msa0519080:CDS
CCCTCTATTCTTCTATCCAT+GGG 0.464009 3_4:+71022013 None:intergenic
TTTGCAAGAATGAAAGTGTT+TGG 0.465560 3_4:-71021981 Msa0519080:exon
TTCGTAAGTCTACCACTCGC+TGG 0.466778 3_4:-71025306 Msa0519080:CDS
GTATTACTATGAATGTCAAT+TGG 0.474165 3_4:-71021645 Msa0519080:three_prime_UTR
ACCCTCTATTCTTCTATCCA+TGG 0.474620 3_4:+71022012 None:intergenic
ACCCATGGATAGAAGAATAG+AGG 0.476052 3_4:-71022014 Msa0519080:CDS
TTACGCCGTCCTTGCAATCA+TGG 0.482817 3_4:+71021609 None:intergenic
TTGAGCACGATTCCATCCAT+TGG 0.487138 3_4:+71025384 None:intergenic
ATAATAAGAAGAACTAATCA+TGG 0.489884 3_4:+71025474 None:intergenic
TCAATCACTCACCGGCGAAA+AGG 0.492016 3_4:-71025263 Msa0519080:intron
TCCACAGAAACCCTTTCGCC+AGG 0.496903 3_4:-71024844 Msa0519080:intron
CCATGAATTAGGAAATCCTC+CGG 0.499492 3_4:+71022434 None:intergenic
TGCTGACCTGCTCATAATAT+AGG 0.501685 3_4:+71024971 None:intergenic
TTAAAACAGGAGGTCGGTGC+AGG 0.502222 3_4:+71022073 None:intergenic
GCCGCACTTTCCACTTCTTG+TGG 0.502949 3_4:-71025565 Msa0519080:five_prime_UTR
TATCAGGGTCTCTGGAAGCT+TGG 0.509159 3_4:+71025149 None:intergenic
GGCTCTACTCCACTCTAGAC+TGG 0.513805 3_4:-71025676 Msa0519080:five_prime_UTR
AGAACTAATCATGGATGGAA+TGG 0.518477 3_4:+71025483 None:intergenic
ATGAGATACACACCTGGGAT+CGG 0.518865 3_4:-71022278 Msa0519080:CDS
GTGAAAGAAAATTGAACCGC+TGG 0.521424 3_4:-71025715 None:intergenic
CTCAAGGCTCTCTTACTCCT+CGG 0.522394 3_4:-71025352 Msa0519080:CDS
CCGATTCCAATTCCAATGGA+TGG 0.522642 3_4:-71025396 Msa0519080:CDS
CGGAGGATTTCCTAATTCAT+GGG 0.524055 3_4:-71022433 Msa0519080:intron
TGGAGTAGAGCCAGAGATGA+GGG 0.525420 3_4:+71025687 None:intergenic
ATTCTTCTATCCATGGGTGG+TGG 0.536104 3_4:+71022019 None:intergenic
AGTCTACCAACCTGGCGAAA+GGG 0.540376 3_4:+71024834 None:intergenic
AAGAAGCTTAGTATTGATAG+AGG 0.542825 3_4:-71021738 Msa0519080:three_prime_UTR
TAAGAAGAACTAATCATGGA+TGG 0.549712 3_4:+71025478 None:intergenic
ATTAGGAAATCCTCCGGGTG+GGG 0.554095 3_4:+71022440 None:intergenic
GATCGGGGTTATGATGATGA+TGG 0.554509 3_4:-71022261 Msa0519080:CDS
CATCTCAAGCGTTGTTCACG+TGG 0.558775 3_4:-71022489 Msa0519080:CDS
ATCATCATAACCCCGATCCC+AGG 0.559871 3_4:+71022266 None:intergenic
AAATGTCCTATATTATGAGC+AGG 0.561090 3_4:-71024977 Msa0519080:intron
TAATATTGAAATAGTTATCA+GGG 0.562932 3_4:+71025134 None:intergenic
TAGTCTACCAACCTGGCGAA+AGG 0.563451 3_4:+71024833 None:intergenic
GCGGCTACAACCACAAGAAG+TGG 0.563655 3_4:+71025555 None:intergenic
CCATCAACTAGCTCAGCAGC+TGG 0.564068 3_4:+71025003 None:intergenic
AATGGATGGAATCGTGCTCA+AGG 0.565023 3_4:-71025382 Msa0519080:CDS
TCGTAAGTCTACCACTCGCT+GGG 0.565666 3_4:-71025305 Msa0519080:CDS
TGCTCAAGGATTAGCTCTCA+AGG 0.565849 3_4:-71025368 Msa0519080:CDS
GTTAGTTTCGTATTGGTCTG+TGG 0.566299 3_4:+71025632 None:intergenic
CCTATTCAATTGCAGGTTTG+GGG 0.568547 3_4:-71022124 Msa0519080:intron
TGTTGAGTGATTTCAGTGGA+TGG 0.568671 3_4:+71025513 None:intergenic
GTGGAGTAGAGCCAGAGATG+AGG 0.569181 3_4:+71025686 None:intergenic
ACCTGGCGAAAGGGTTTCTG+TGG 0.572687 3_4:+71024843 None:intergenic
CATGGATATGCAGTATTCCA+AGG 0.578376 3_4:-71025173 Msa0519080:intron
TTCATTCATCCAGTCTAGAG+TGG 0.581244 3_4:+71025667 None:intergenic
GGTGCAGGCTTGAACTCGTA+AGG 0.581581 3_4:+71022088 None:intergenic
GGAAAACGCTGCTTATATGA+AGG 0.583887 3_4:-71022468 Msa0519080:CDS
TATGAAGGTTCAACCCCACC+CGG 0.591979 3_4:-71022453 Msa0519080:CDS
TACATATGCCATCAGAGACA+TGG 0.594000 3_4:-71023760 Msa0519080:CDS
GAGATACACACCTGGGATCG+GGG 0.595929 3_4:-71022276 Msa0519080:CDS
CTACTGTACTTCAGAACTTG+CGG 0.598735 3_4:-71022313 Msa0519080:CDS
AATTAGGAAATCCTCCGGGT+GGG 0.600949 3_4:+71022439 None:intergenic
CCCATGGATAGAAGAATAGA+GGG 0.605217 3_4:-71022013 Msa0519080:CDS
TCTATTCTTCTATCCATGGG+TGG 0.613129 3_4:+71022016 None:intergenic
CGCAAGTTCTGAAGTACAGT+AGG 0.615332 3_4:+71022314 None:intergenic
GAATTACATCGCAATTGTGA+AGG 0.617806 3_4:+71021690 None:intergenic
TTATATTGACAGATAGCAAG+TGG 0.620752 3_4:+71021935 None:intergenic
AAATTTCTGTGATCGGCCAA+AGG 0.621478 3_4:-71023727 Msa0519080:CDS
TGGAAGCAGCCAAATAGCGA+GGG 0.625118 3_4:+71025533 None:intergenic
GAATCCGATTCCAATTCCAA+TGG 0.625552 3_4:-71025400 Msa0519080:CDS
ACGAGTATGGTCCCAGCGAG+TGG 0.633200 3_4:+71025294 None:intergenic
CTAGGAATATTAATCAAACC+CGG 0.638689 3_4:+71021803 None:intergenic
AAATGTATCATTAAAACAGG+AGG 0.650601 3_4:+71022063 None:intergenic
TTAGTCACTCAATCACTCAC+CGG 0.659288 3_4:-71025271 Msa0519080:CDS
AAGCAGCCAAATAGCGAGGG+CGG 0.659908 3_4:+71025536 None:intergenic
ATGGAAGCAGCCAAATAGCG+AGG 0.660716 3_4:+71025532 None:intergenic
TGATTGTTGAGTGATTTCAG+TGG 0.661881 3_4:+71025509 None:intergenic
GTATCATTAAAACAGGAGGT+CGG 0.664509 3_4:+71022067 None:intergenic
ACCACAAGAAGTGGAAAGTG+CGG 0.665986 3_4:+71025564 None:intergenic
GAATTAGGAAATCCTCCGGG+TGG 0.668022 3_4:+71022438 None:intergenic
CATGAATTAGGAAATCCTCC+GGG 0.668389 3_4:+71022435 None:intergenic
AGAGATGAGGGAGAATCCAG+CGG 0.680219 3_4:+71025699 None:intergenic
AAGGCTCTCTTACTCCTCGG+TGG 0.681352 3_4:-71025349 Msa0519080:CDS
AGAGTTGAAATGTGATGTTG+AGG 0.695193 3_4:-71024634 Msa0519080:intron
AGAACAATGAGATACACACC+TGG 0.699199 3_4:-71022284 Msa0519080:CDS
GAACAATGAGATACACACCT+GGG 0.705723 3_4:-71022283 Msa0519080:CDS
ATATGCCATCAGAGACATGG+AGG 0.729438 3_4:-71023757 Msa0519080:CDS
GAAGGTTCAACCCCACCCGG+AGG 0.739658 3_4:-71022450 Msa0519080:CDS
ACAACCAGAAGAAGTCATTG+GGG 0.750751 3_4:-71023694 Msa0519080:intron
TGACGAGAAGAGCGCCACCG+AGG 0.753935 3_4:+71025335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAATATTTACATCTT+GGG + chr3_4:71023417-71023436 None:intergenic 10.0%
!!! TAATAATTTTACAATAAAGT+AGG - chr3_4:71023848-71023867 Msa0519080:intron 10.0%
!!! AATAATTTTACAATAAAGTA+GGG - chr3_4:71023849-71023868 Msa0519080:intron 10.0%
!! ATTAATAATATTTACATCTT+GGG + chr3_4:71023417-71023436 None:intergenic 10.0%
!!! TAATAATTTTACAATAAAGT+AGG - chr3_4:71023848-71023867 Msa0519080:intron 10.0%
!!! AATAATTTTACAATAAAGTA+GGG - chr3_4:71023849-71023868 Msa0519080:intron 10.0%
!! TAATATTGAAATAGTTATCA+GGG + chr3_4:71022201-71022220 None:intergenic 15.0%
!!! TTCTTCTGAAAATTTTTATT+TGG - chr3_4:71022528-71022547 Msa0519080:intron 15.0%
!! TTAAAAGTTATTCTCATATT+TGG - chr3_4:71023275-71023294 Msa0519080:intron 15.0%
!! GATTAATAATATTTACATCT+TGG + chr3_4:71023418-71023437 None:intergenic 15.0%
!!! TTTTTTATAGAAAACTATTC+TGG + chr3_4:71024544-71024563 None:intergenic 15.0%
!! TAATATTGAAATAGTTATCA+GGG + chr3_4:71022201-71022220 None:intergenic 15.0%
!!! TTCTTCTGAAAATTTTTATT+TGG - chr3_4:71022528-71022547 Msa0519080:intron 15.0%
!! TTAAAAGTTATTCTCATATT+TGG - chr3_4:71023275-71023294 Msa0519080:intron 15.0%
!! GATTAATAATATTTACATCT+TGG + chr3_4:71023418-71023437 None:intergenic 15.0%
!!! TTTTTTATAGAAAACTATTC+TGG + chr3_4:71024544-71024563 None:intergenic 15.0%
!! ATAATAAGAAGAACTAATCA+TGG + chr3_4:71021861-71021880 None:intergenic 20.0%
!! CTAATATTGAAATAGTTATC+AGG + chr3_4:71022202-71022221 None:intergenic 20.0%
!! CTGATAACTATTTCAATATT+AGG - chr3_4:71022200-71022219 Msa0519080:intron 20.0%
!! ATCATCTAATGTTGAAATTT+CGG - chr3_4:71022814-71022833 Msa0519080:intron 20.0%
!! AATTTATAATGAAAGAGATG+TGG + chr3_4:71022867-71022886 None:intergenic 20.0%
!! AATACAAAAATTTCTGTGAT+CGG - chr3_4:71023598-71023617 Msa0519080:intron 20.0%
!! TAGAAAATCAAACTAAAAGA+TGG + chr3_4:71024433-71024452 None:intergenic 20.0%
!!! GTTTTCTATAAAAAATTCCA+TGG - chr3_4:71024549-71024568 Msa0519080:intron 20.0%
!! TTCTTTATCTATAGTTTCTT+AGG - chr3_4:71024678-71024697 Msa0519080:intron 20.0%
!!! TCTAGGTTTTAAATTTATGA+AGG + chr3_4:71025158-71025177 None:intergenic 20.0%
!!! ATTTAAAACCTAGACAATAA+AGG - chr3_4:71025164-71025183 Msa0519080:intron 20.0%
!! TTAATATTCCTAGCATATTT+AGG - chr3_4:71025539-71025558 Msa0519080:five_prime_UTR 20.0%
!! ATAATAAGAAGAACTAATCA+TGG + chr3_4:71021861-71021880 None:intergenic 20.0%
!! CTAATATTGAAATAGTTATC+AGG + chr3_4:71022202-71022221 None:intergenic 20.0%
!! CTGATAACTATTTCAATATT+AGG - chr3_4:71022200-71022219 Msa0519080:intron 20.0%
!! ATCATCTAATGTTGAAATTT+CGG - chr3_4:71022814-71022833 Msa0519080:intron 20.0%
!! AATTTATAATGAAAGAGATG+TGG + chr3_4:71022867-71022886 None:intergenic 20.0%
!! AATACAAAAATTTCTGTGAT+CGG - chr3_4:71023598-71023617 Msa0519080:intron 20.0%
!! TAGAAAATCAAACTAAAAGA+TGG + chr3_4:71024433-71024452 None:intergenic 20.0%
!!! GTTTTCTATAAAAAATTCCA+TGG - chr3_4:71024549-71024568 Msa0519080:intron 20.0%
!! TTCTTTATCTATAGTTTCTT+AGG - chr3_4:71024678-71024697 Msa0519080:intron 20.0%
!!! TCTAGGTTTTAAATTTATGA+AGG + chr3_4:71025158-71025177 None:intergenic 20.0%
!!! ATTTAAAACCTAGACAATAA+AGG - chr3_4:71025164-71025183 Msa0519080:intron 20.0%
!! TTAATATTCCTAGCATATTT+AGG - chr3_4:71025539-71025558 Msa0519080:five_prime_UTR 20.0%
! ACATTCTTATTGAGAATTCT+AGG + chr3_4:71021735-71021754 None:intergenic 25.0%
! GAAACAAGAAAAAGAAAAGT+GGG + chr3_4:71022105-71022124 None:intergenic 25.0%
! AGAAACAAGAAAAAGAAAAG+TGG + chr3_4:71022106-71022125 None:intergenic 25.0%
! AAGTAGAATTATTAGAGTGT+TGG + chr3_4:71022237-71022256 None:intergenic 25.0%
!! CTTGATTGAGCTAATTTTAA+AGG + chr3_4:71022435-71022454 None:intergenic 25.0%
! ATAAGATATCTTCCAACTTT+AGG - chr3_4:71022758-71022777 Msa0519080:intron 25.0%
!! ATTAGATGATTCATTTTCCT+GGG + chr3_4:71022804-71022823 None:intergenic 25.0%
! TCATCTAATGTTGAAATTTC+GGG - chr3_4:71022815-71022834 Msa0519080:intron 25.0%
!!! ATTAGAGGATTTATTTTCCT+GGG + chr3_4:71022950-71022969 None:intergenic 25.0%
!! ATCCTCTAATGTTGAAATTT+TGG - chr3_4:71022960-71022979 Msa0519080:intron 25.0%
! ATCCAAAATTTCAACATTAG+AGG + chr3_4:71022965-71022984 None:intergenic 25.0%
!!! TATTTGGTTTTACGTATACA+TGG - chr3_4:71023291-71023310 Msa0519080:intron 25.0%
!!! TCAGTTTGTTATTTGTGTTT+TGG - chr3_4:71023350-71023369 Msa0519080:intron 25.0%
!! ACTTGTTCTTGTATTTCTAT+AGG - chr3_4:71023464-71023483 Msa0519080:intron 25.0%
!! CTTGTTCTTGTATTTCTATA+GGG - chr3_4:71023465-71023484 Msa0519080:intron 25.0%
!!! ACAGTTGTCATTTTTTTGTT+AGG - chr3_4:71023724-71023743 Msa0519080:CDS 25.0%
!!! CAGTTGTCATTTTTTTGTTA+GGG - chr3_4:71023725-71023744 Msa0519080:CDS 25.0%
! TCGATGTAAATAAAATTCGT+TGG - chr3_4:71023769-71023788 Msa0519080:intron 25.0%
! ACCTTCATATACAAAATTCT+GGG + chr3_4:71024169-71024188 None:intergenic 25.0%
!!! CTTCTATCTTTTAGTTGAAA+TGG - chr3_4:71024296-71024315 Msa0519080:intron 25.0%
! AAGAATTGATGAGAGAAAAT+GGG - chr3_4:71024384-71024403 Msa0519080:intron 25.0%
!! GATTTTCTATCAATCTTGTA+AGG - chr3_4:71024444-71024463 Msa0519080:intron 25.0%
!!! TTTGAGATGAACTTTTCAAT+AGG - chr3_4:71024487-71024506 Msa0519080:intron 25.0%
!!! GTTTTAAATTTATGAAGGTG+AGG + chr3_4:71025153-71025172 None:intergenic 25.0%
!!! ATTTTTTCCTATTCAATTGC+AGG - chr3_4:71025201-71025220 Msa0519080:intron 25.0%
! AAATGTATCATTAAAACAGG+AGG + chr3_4:71025272-71025291 None:intergenic 25.0%
! CGAAAATGTATCATTAAAAC+AGG + chr3_4:71025275-71025294 None:intergenic 25.0%
!!! AAAGAAACTAGCTCTTTTAT+TGG + chr3_4:71025498-71025517 None:intergenic 25.0%
!! TATCTTTTCCTAAATATGCT+AGG + chr3_4:71025550-71025569 None:intergenic 25.0%
!!! TAATTCTGAGATTTGTCTTA+TGG - chr3_4:71025659-71025678 Msa0519080:five_prime_UTR 25.0%
! GTATTACTATGAATGTCAAT+TGG - chr3_4:71025687-71025706 Msa0519080:five_prime_UTR 25.0%
! ACATTCTTATTGAGAATTCT+AGG + chr3_4:71021735-71021754 None:intergenic 25.0%
! GAAACAAGAAAAAGAAAAGT+GGG + chr3_4:71022105-71022124 None:intergenic 25.0%
! AGAAACAAGAAAAAGAAAAG+TGG + chr3_4:71022106-71022125 None:intergenic 25.0%
! AAGTAGAATTATTAGAGTGT+TGG + chr3_4:71022237-71022256 None:intergenic 25.0%
!! CTTGATTGAGCTAATTTTAA+AGG + chr3_4:71022435-71022454 None:intergenic 25.0%
! ATAAGATATCTTCCAACTTT+AGG - chr3_4:71022758-71022777 Msa0519080:intron 25.0%
!! ATTAGATGATTCATTTTCCT+GGG + chr3_4:71022804-71022823 None:intergenic 25.0%
! TCATCTAATGTTGAAATTTC+GGG - chr3_4:71022815-71022834 Msa0519080:intron 25.0%
!!! ATTAGAGGATTTATTTTCCT+GGG + chr3_4:71022950-71022969 None:intergenic 25.0%
!! ATCCTCTAATGTTGAAATTT+TGG - chr3_4:71022960-71022979 Msa0519080:intron 25.0%
! ATCCAAAATTTCAACATTAG+AGG + chr3_4:71022965-71022984 None:intergenic 25.0%
!!! TATTTGGTTTTACGTATACA+TGG - chr3_4:71023291-71023310 Msa0519080:intron 25.0%
!!! TCAGTTTGTTATTTGTGTTT+TGG - chr3_4:71023350-71023369 Msa0519080:intron 25.0%
!! ACTTGTTCTTGTATTTCTAT+AGG - chr3_4:71023464-71023483 Msa0519080:intron 25.0%
!! CTTGTTCTTGTATTTCTATA+GGG - chr3_4:71023465-71023484 Msa0519080:intron 25.0%
!!! ACAGTTGTCATTTTTTTGTT+AGG - chr3_4:71023724-71023743 Msa0519080:CDS 25.0%
!!! CAGTTGTCATTTTTTTGTTA+GGG - chr3_4:71023725-71023744 Msa0519080:CDS 25.0%
! TCGATGTAAATAAAATTCGT+TGG - chr3_4:71023769-71023788 Msa0519080:intron 25.0%
! ACCTTCATATACAAAATTCT+GGG + chr3_4:71024169-71024188 None:intergenic 25.0%
!!! CTTCTATCTTTTAGTTGAAA+TGG - chr3_4:71024296-71024315 Msa0519080:intron 25.0%
! AAGAATTGATGAGAGAAAAT+GGG - chr3_4:71024384-71024403 Msa0519080:intron 25.0%
!! GATTTTCTATCAATCTTGTA+AGG - chr3_4:71024444-71024463 Msa0519080:intron 25.0%
!!! TTTGAGATGAACTTTTCAAT+AGG - chr3_4:71024487-71024506 Msa0519080:intron 25.0%
!!! GTTTTAAATTTATGAAGGTG+AGG + chr3_4:71025153-71025172 None:intergenic 25.0%
!!! ATTTTTTCCTATTCAATTGC+AGG - chr3_4:71025201-71025220 Msa0519080:intron 25.0%
! AAATGTATCATTAAAACAGG+AGG + chr3_4:71025272-71025291 None:intergenic 25.0%
! CGAAAATGTATCATTAAAAC+AGG + chr3_4:71025275-71025294 None:intergenic 25.0%
!!! AAAGAAACTAGCTCTTTTAT+TGG + chr3_4:71025498-71025517 None:intergenic 25.0%
!! TATCTTTTCCTAAATATGCT+AGG + chr3_4:71025550-71025569 None:intergenic 25.0%
!!! TAATTCTGAGATTTGTCTTA+TGG - chr3_4:71025659-71025678 Msa0519080:five_prime_UTR 25.0%
! GTATTACTATGAATGTCAAT+TGG - chr3_4:71025687-71025706 Msa0519080:five_prime_UTR 25.0%
! GTTGTATGTTAGTTTCGTAT+TGG + chr3_4:71021710-71021729 None:intergenic 30.0%
TAAGAAGAACTAATCATGGA+TGG + chr3_4:71021857-71021876 None:intergenic 30.0%
TTCATTCAATTCTTCATCCA+TGG - chr3_4:71022141-71022160 Msa0519080:intron 30.0%
!! GAATTATTAGAGTGTTGGAA+AGG + chr3_4:71022232-71022251 None:intergenic 30.0%
AAATGTCCTATATTATGAGC+AGG - chr3_4:71022355-71022374 Msa0519080:intron 30.0%
! AAGTTTTTCTTTATGATGCC+AGG - chr3_4:71022452-71022471 Msa0519080:CDS 30.0%
ATATATATAGTCTACCAACC+TGG + chr3_4:71022509-71022528 None:intergenic 30.0%
! ACATCACATTTCAACTCTTT+TGG + chr3_4:71022696-71022715 None:intergenic 30.0%
ATTAGCTAATGACCTAAAGT+TGG + chr3_4:71022773-71022792 None:intergenic 30.0%
! CATTAGATGATTCATTTTCC+TGG + chr3_4:71022805-71022824 None:intergenic 30.0%
!! CATTAGAGGATTTATTTTCC+TGG + chr3_4:71022951-71022970 None:intergenic 30.0%
!! ATGTGAAATTTTAACACGAG+AGG - chr3_4:71023116-71023135 Msa0519080:intron 30.0%
CTTAGAATTAAGTCCTAGAA+TGG + chr3_4:71023144-71023163 None:intergenic 30.0%
TAATGATAAACTCCCTCTAT+GGG + chr3_4:71023171-71023190 None:intergenic 30.0%
ATAATGATAAACTCCCTCTA+TGG + chr3_4:71023172-71023191 None:intergenic 30.0%
!! ATCATTATTTTTCCGTCGAA+TGG - chr3_4:71023184-71023203 Msa0519080:intron 30.0%
TAATATTTACATCTTGGGCA+TGG + chr3_4:71023412-71023431 None:intergenic 30.0%
ACAAGTATCCCTATAATGTA+GGG + chr3_4:71023450-71023469 None:intergenic 30.0%
AACAAGTATCCCTATAATGT+AGG + chr3_4:71023451-71023470 None:intergenic 30.0%
TGTCTAAAAAAGAAGATTCC+TGG + chr3_4:71023707-71023726 None:intergenic 30.0%
!!! ATTTTTTTGTTAGGGAGAAG+TGG - chr3_4:71023733-71023752 Msa0519080:CDS 30.0%
!!! TTTTTTTGTTAGGGAGAAGT+GGG - chr3_4:71023734-71023753 Msa0519080:CDS 30.0%
ATGTCAAAATAATTGTGTCG+AGG - chr3_4:71023792-71023811 Msa0519080:intron 30.0%
CGAAGAAAGTAAAGAAAAAC+AGG - chr3_4:71023820-71023839 Msa0519080:intron 30.0%
AAGTAGGGTATAAAGAAGTA+TGG - chr3_4:71023864-71023883 Msa0519080:intron 30.0%
AAAAGTGACAATTGATACCA+AGG + chr3_4:71024100-71024119 None:intergenic 30.0%
!!! TGGTATCAATTGTCACTTTT+AGG - chr3_4:71024100-71024119 Msa0519080:intron 30.0%
CTTCATATACAAAATTCTGG+GGG + chr3_4:71024167-71024186 None:intergenic 30.0%
CCTTCATATACAAAATTCTG+GGG + chr3_4:71024168-71024187 None:intergenic 30.0%
CACCTTCATATACAAAATTC+TGG + chr3_4:71024170-71024189 None:intergenic 30.0%
TGTATATGAAGGTGATGATA+TGG - chr3_4:71024176-71024195 Msa0519080:intron 30.0%
GAAGAATTGATGAGAGAAAA+TGG - chr3_4:71024383-71024402 Msa0519080:intron 30.0%
AGAATTGATGAGAGAAAATG+GGG - chr3_4:71024385-71024404 Msa0519080:intron 30.0%
GAAAAGTTCATCTCAAACTA+TGG + chr3_4:71024484-71024503 None:intergenic 30.0%
AGTTTACGTCTTTAATGACT+TGG - chr3_4:71024600-71024619 Msa0519080:intron 30.0%
!! TTCAAGTATTGGATAAGTCA+AGG + chr3_4:71024734-71024753 None:intergenic 30.0%
ACTTATCCAATACTTGAACA+AGG - chr3_4:71024736-71024755 Msa0519080:intron 30.0%
GTATTACCTTGTTCAAGTAT+TGG + chr3_4:71024745-71024764 None:intergenic 30.0%
TCAACTACTAAAAGGAATAG+AGG + chr3_4:71024767-71024786 None:intergenic 30.0%
AAGGAAGATCAACTACTAAA+AGG + chr3_4:71024775-71024794 None:intergenic 30.0%
CTGAAAATTACCCATGAATT+AGG + chr3_4:71024912-71024931 None:intergenic 30.0%
CAAAAATGAGGGTAATAAGA+CGG + chr3_4:71024944-71024963 None:intergenic 30.0%
TGATACAGGTACAAAAATGA+GGG + chr3_4:71024955-71024974 None:intergenic 30.0%
!!! TTCTGTTTTTAGAAGAAGTG+CGG + chr3_4:71024990-71025009 None:intergenic 30.0%
! CACTTCTTCTAAAAACAGAA+TGG - chr3_4:71024990-71025009 Msa0519080:CDS 30.0%
TAAGTTCACCTTTATTGTCT+AGG + chr3_4:71025175-71025194 None:intergenic 30.0%
!! TTTGCAAGAATGAAAGTGTT+TGG - chr3_4:71025351-71025370 Msa0519080:CDS 30.0%
TTATATTGACAGATAGCAAG+TGG + chr3_4:71025400-71025419 None:intergenic 30.0%
CTAGGAATATTAATCAAACC+CGG + chr3_4:71025532-71025551 None:intergenic 30.0%
CTATCAATACTAAGCTTCTT+AGG + chr3_4:71025594-71025613 None:intergenic 30.0%
!! AAGAAGCTTAGTATTGATAG+AGG - chr3_4:71025594-71025613 Msa0519080:five_prime_UTR 30.0%
! GTTGTATGTTAGTTTCGTAT+TGG + chr3_4:71021710-71021729 None:intergenic 30.0%
TAAGAAGAACTAATCATGGA+TGG + chr3_4:71021857-71021876 None:intergenic 30.0%
TTCATTCAATTCTTCATCCA+TGG - chr3_4:71022141-71022160 Msa0519080:intron 30.0%
!! GAATTATTAGAGTGTTGGAA+AGG + chr3_4:71022232-71022251 None:intergenic 30.0%
AAATGTCCTATATTATGAGC+AGG - chr3_4:71022355-71022374 Msa0519080:intron 30.0%
! AAGTTTTTCTTTATGATGCC+AGG - chr3_4:71022452-71022471 Msa0519080:CDS 30.0%
ATATATATAGTCTACCAACC+TGG + chr3_4:71022509-71022528 None:intergenic 30.0%
! ACATCACATTTCAACTCTTT+TGG + chr3_4:71022696-71022715 None:intergenic 30.0%
ATTAGCTAATGACCTAAAGT+TGG + chr3_4:71022773-71022792 None:intergenic 30.0%
! CATTAGATGATTCATTTTCC+TGG + chr3_4:71022805-71022824 None:intergenic 30.0%
!! CATTAGAGGATTTATTTTCC+TGG + chr3_4:71022951-71022970 None:intergenic 30.0%
!! ATGTGAAATTTTAACACGAG+AGG - chr3_4:71023116-71023135 Msa0519080:intron 30.0%
CTTAGAATTAAGTCCTAGAA+TGG + chr3_4:71023144-71023163 None:intergenic 30.0%
TAATGATAAACTCCCTCTAT+GGG + chr3_4:71023171-71023190 None:intergenic 30.0%
ATAATGATAAACTCCCTCTA+TGG + chr3_4:71023172-71023191 None:intergenic 30.0%
!! ATCATTATTTTTCCGTCGAA+TGG - chr3_4:71023184-71023203 Msa0519080:intron 30.0%
TAATATTTACATCTTGGGCA+TGG + chr3_4:71023412-71023431 None:intergenic 30.0%
ACAAGTATCCCTATAATGTA+GGG + chr3_4:71023450-71023469 None:intergenic 30.0%
AACAAGTATCCCTATAATGT+AGG + chr3_4:71023451-71023470 None:intergenic 30.0%
TGTCTAAAAAAGAAGATTCC+TGG + chr3_4:71023707-71023726 None:intergenic 30.0%
!!! ATTTTTTTGTTAGGGAGAAG+TGG - chr3_4:71023733-71023752 Msa0519080:CDS 30.0%
!!! TTTTTTTGTTAGGGAGAAGT+GGG - chr3_4:71023734-71023753 Msa0519080:CDS 30.0%
ATGTCAAAATAATTGTGTCG+AGG - chr3_4:71023792-71023811 Msa0519080:intron 30.0%
CGAAGAAAGTAAAGAAAAAC+AGG - chr3_4:71023820-71023839 Msa0519080:intron 30.0%
AAGTAGGGTATAAAGAAGTA+TGG - chr3_4:71023864-71023883 Msa0519080:intron 30.0%
AAAAGTGACAATTGATACCA+AGG + chr3_4:71024100-71024119 None:intergenic 30.0%
!!! TGGTATCAATTGTCACTTTT+AGG - chr3_4:71024100-71024119 Msa0519080:intron 30.0%
CTTCATATACAAAATTCTGG+GGG + chr3_4:71024167-71024186 None:intergenic 30.0%
CCTTCATATACAAAATTCTG+GGG + chr3_4:71024168-71024187 None:intergenic 30.0%
CACCTTCATATACAAAATTC+TGG + chr3_4:71024170-71024189 None:intergenic 30.0%
TGTATATGAAGGTGATGATA+TGG - chr3_4:71024176-71024195 Msa0519080:intron 30.0%
GAAGAATTGATGAGAGAAAA+TGG - chr3_4:71024383-71024402 Msa0519080:intron 30.0%
AGAATTGATGAGAGAAAATG+GGG - chr3_4:71024385-71024404 Msa0519080:intron 30.0%
GAAAAGTTCATCTCAAACTA+TGG + chr3_4:71024484-71024503 None:intergenic 30.0%
AGTTTACGTCTTTAATGACT+TGG - chr3_4:71024600-71024619 Msa0519080:intron 30.0%
!! TTCAAGTATTGGATAAGTCA+AGG + chr3_4:71024734-71024753 None:intergenic 30.0%
ACTTATCCAATACTTGAACA+AGG - chr3_4:71024736-71024755 Msa0519080:intron 30.0%
GTATTACCTTGTTCAAGTAT+TGG + chr3_4:71024745-71024764 None:intergenic 30.0%
TCAACTACTAAAAGGAATAG+AGG + chr3_4:71024767-71024786 None:intergenic 30.0%
AAGGAAGATCAACTACTAAA+AGG + chr3_4:71024775-71024794 None:intergenic 30.0%
CTGAAAATTACCCATGAATT+AGG + chr3_4:71024912-71024931 None:intergenic 30.0%
CAAAAATGAGGGTAATAAGA+CGG + chr3_4:71024944-71024963 None:intergenic 30.0%
TGATACAGGTACAAAAATGA+GGG + chr3_4:71024955-71024974 None:intergenic 30.0%
!!! TTCTGTTTTTAGAAGAAGTG+CGG + chr3_4:71024990-71025009 None:intergenic 30.0%
! CACTTCTTCTAAAAACAGAA+TGG - chr3_4:71024990-71025009 Msa0519080:CDS 30.0%
TAAGTTCACCTTTATTGTCT+AGG + chr3_4:71025175-71025194 None:intergenic 30.0%
!! TTTGCAAGAATGAAAGTGTT+TGG - chr3_4:71025351-71025370 Msa0519080:CDS 30.0%
TTATATTGACAGATAGCAAG+TGG + chr3_4:71025400-71025419 None:intergenic 30.0%
CTAGGAATATTAATCAAACC+CGG + chr3_4:71025532-71025551 None:intergenic 30.0%
CTATCAATACTAAGCTTCTT+AGG + chr3_4:71025594-71025613 None:intergenic 30.0%
!! AAGAAGCTTAGTATTGATAG+AGG - chr3_4:71025594-71025613 Msa0519080:five_prime_UTR 30.0%
TGATTGTTGAGTGATTTCAG+TGG + chr3_4:71021826-71021845 None:intergenic 35.0%
AGAACTAATCATGGATGGAA+TGG + chr3_4:71021852-71021871 None:intergenic 35.0%
CATCATCATCATCATGTGTA+CGG - chr3_4:71021904-71021923 Msa0519080:three_prime_UTR 35.0%
ATTGGAATTGGAATCGGATT+CGG + chr3_4:71021933-71021952 None:intergenic 35.0%
ATTGAGTGACTAAACGAGTA+TGG + chr3_4:71022054-71022073 None:intergenic 35.0%
AAAAGAAAAGTGGGAGGAAA+AGG + chr3_4:71022096-71022115 None:intergenic 35.0%
ACAAGAAAAAGAAAAGTGGG+AGG + chr3_4:71022102-71022121 None:intergenic 35.0%
CTCTGCAAAAAGATGAACAA+TGG + chr3_4:71022651-71022670 None:intergenic 35.0%
! CATTGTTCATCTTTTTGCAG+AGG - chr3_4:71022649-71022668 Msa0519080:intron 35.0%
! CATTTCAACTCTTTTGGACA+AGG + chr3_4:71022690-71022709 None:intergenic 35.0%
AGAGTTGAAATGTGATGTTG+AGG - chr3_4:71022698-71022717 Msa0519080:intron 35.0%
GTGATGTTGAGGTATGTATT+CGG - chr3_4:71022709-71022728 Msa0519080:intron 35.0%
AGTGAGAGACAACTTGTAAA+CGG - chr3_4:71023081-71023100 Msa0519080:intron 35.0%
AACTTGTAAACGGGATAACA+AGG - chr3_4:71023091-71023110 Msa0519080:intron 35.0%
!! AATTCTAAGATCTCCCATAG+AGG - chr3_4:71023155-71023174 Msa0519080:intron 35.0%
!! ATTCTAAGATCTCCCATAGA+GGG - chr3_4:71023156-71023175 Msa0519080:intron 35.0%
!!! GTTTTTTCAATGCCATTCGA+CGG + chr3_4:71023199-71023218 None:intergenic 35.0%
AAAAATCCTCTTCACAACGA+AGG + chr3_4:71023235-71023254 None:intergenic 35.0%
TAACCATTGCCCTACATTAT+AGG - chr3_4:71023438-71023457 Msa0519080:intron 35.0%
AACCATTGCCCTACATTATA+GGG - chr3_4:71023439-71023458 Msa0519080:intron 35.0%
TGTACTTAACTGTCAGCAAA+AGG + chr3_4:71023556-71023575 None:intergenic 35.0%
AATAGCTGTAGATGGATCAA+TGG - chr3_4:71023948-71023967 Msa0519080:intron 35.0%
ATCAATGGATACCCAAGAAA+TGG - chr3_4:71023963-71023982 Msa0519080:intron 35.0%
! TATACAAAATTCTGGGGGAA+AGG + chr3_4:71024162-71024181 None:intergenic 35.0%
! CCCCAGAATTTTGTATATGA+AGG - chr3_4:71024165-71024184 Msa0519080:intron 35.0%
GTTCTACATCCTACTTTAGT+GGG + chr3_4:71024213-71024232 None:intergenic 35.0%
! AATGGATTCTTTCCTTCAAC+TGG - chr3_4:71024314-71024333 Msa0519080:intron 35.0%
GTTCATCTCAAACTATGGAA+TGG + chr3_4:71024479-71024498 None:intergenic 35.0%
AAACTATTCTGGTACATTGC+AGG + chr3_4:71024533-71024552 None:intergenic 35.0%
GCTCAAAATATAGAAGACCA+TGG + chr3_4:71024569-71024588 None:intergenic 35.0%
GCAAATCACAGTATATGTCA+AGG + chr3_4:71024794-71024813 None:intergenic 35.0%
! TGACATATACTGTGATTTGC+AGG - chr3_4:71024794-71024813 Msa0519080:intron 35.0%
! TACTGTGATTTGCAGGATAT+TGG - chr3_4:71024801-71024820 Msa0519080:intron 35.0%
CTGATACAGGTACAAAAATG+AGG + chr3_4:71024956-71024975 None:intergenic 35.0%
GGATATTAAGACACTGATAC+AGG + chr3_4:71024969-71024988 None:intergenic 35.0%
TTCCTATTCAATTGCAGGTT+TGG - chr3_4:71025206-71025225 Msa0519080:intron 35.0%
TCCTATTCAATTGCAGGTTT+GGG - chr3_4:71025207-71025226 Msa0519080:intron 35.0%
GTATCATTAAAACAGGAGGT+CGG + chr3_4:71025268-71025287 None:intergenic 35.0%
AGTGGCTGAATTACACATTA+TGG + chr3_4:71025382-71025401 None:intergenic 35.0%
!! ACTAGCTCTTTTATTGGCTA+TGG + chr3_4:71025492-71025511 None:intergenic 35.0%
!!! GTTTCTTTGTTTTTCTCGAC+CGG - chr3_4:71025510-71025529 Msa0519080:five_prime_UTR 35.0%
!!! TTTCTTTGTTTTTCTCGACC+GGG - chr3_4:71025511-71025530 Msa0519080:five_prime_UTR 35.0%
GAATTACATCGCAATTGTGA+AGG + chr3_4:71025645-71025664 None:intergenic 35.0%
TGATTGTTGAGTGATTTCAG+TGG + chr3_4:71021826-71021845 None:intergenic 35.0%
AGAACTAATCATGGATGGAA+TGG + chr3_4:71021852-71021871 None:intergenic 35.0%
CATCATCATCATCATGTGTA+CGG - chr3_4:71021904-71021923 Msa0519080:three_prime_UTR 35.0%
ATTGGAATTGGAATCGGATT+CGG + chr3_4:71021933-71021952 None:intergenic 35.0%
ATTGAGTGACTAAACGAGTA+TGG + chr3_4:71022054-71022073 None:intergenic 35.0%
AAAAGAAAAGTGGGAGGAAA+AGG + chr3_4:71022096-71022115 None:intergenic 35.0%
ACAAGAAAAAGAAAAGTGGG+AGG + chr3_4:71022102-71022121 None:intergenic 35.0%
CTCTGCAAAAAGATGAACAA+TGG + chr3_4:71022651-71022670 None:intergenic 35.0%
! CATTGTTCATCTTTTTGCAG+AGG - chr3_4:71022649-71022668 Msa0519080:intron 35.0%
! CATTTCAACTCTTTTGGACA+AGG + chr3_4:71022690-71022709 None:intergenic 35.0%
AGAGTTGAAATGTGATGTTG+AGG - chr3_4:71022698-71022717 Msa0519080:intron 35.0%
GTGATGTTGAGGTATGTATT+CGG - chr3_4:71022709-71022728 Msa0519080:intron 35.0%
AGTGAGAGACAACTTGTAAA+CGG - chr3_4:71023081-71023100 Msa0519080:intron 35.0%
AACTTGTAAACGGGATAACA+AGG - chr3_4:71023091-71023110 Msa0519080:intron 35.0%
!! AATTCTAAGATCTCCCATAG+AGG - chr3_4:71023155-71023174 Msa0519080:intron 35.0%
!! ATTCTAAGATCTCCCATAGA+GGG - chr3_4:71023156-71023175 Msa0519080:intron 35.0%
!!! GTTTTTTCAATGCCATTCGA+CGG + chr3_4:71023199-71023218 None:intergenic 35.0%
AAAAATCCTCTTCACAACGA+AGG + chr3_4:71023235-71023254 None:intergenic 35.0%
TAACCATTGCCCTACATTAT+AGG - chr3_4:71023438-71023457 Msa0519080:intron 35.0%
AACCATTGCCCTACATTATA+GGG - chr3_4:71023439-71023458 Msa0519080:intron 35.0%
TGTACTTAACTGTCAGCAAA+AGG + chr3_4:71023556-71023575 None:intergenic 35.0%
AATAGCTGTAGATGGATCAA+TGG - chr3_4:71023948-71023967 Msa0519080:intron 35.0%
ATCAATGGATACCCAAGAAA+TGG - chr3_4:71023963-71023982 Msa0519080:intron 35.0%
! TATACAAAATTCTGGGGGAA+AGG + chr3_4:71024162-71024181 None:intergenic 35.0%
! CCCCAGAATTTTGTATATGA+AGG - chr3_4:71024165-71024184 Msa0519080:intron 35.0%
GTTCTACATCCTACTTTAGT+GGG + chr3_4:71024213-71024232 None:intergenic 35.0%
! AATGGATTCTTTCCTTCAAC+TGG - chr3_4:71024314-71024333 Msa0519080:intron 35.0%
GTTCATCTCAAACTATGGAA+TGG + chr3_4:71024479-71024498 None:intergenic 35.0%
AAACTATTCTGGTACATTGC+AGG + chr3_4:71024533-71024552 None:intergenic 35.0%
GCTCAAAATATAGAAGACCA+TGG + chr3_4:71024569-71024588 None:intergenic 35.0%
GCAAATCACAGTATATGTCA+AGG + chr3_4:71024794-71024813 None:intergenic 35.0%
! TGACATATACTGTGATTTGC+AGG - chr3_4:71024794-71024813 Msa0519080:intron 35.0%
! TACTGTGATTTGCAGGATAT+TGG - chr3_4:71024801-71024820 Msa0519080:intron 35.0%
CTGATACAGGTACAAAAATG+AGG + chr3_4:71024956-71024975 None:intergenic 35.0%
GGATATTAAGACACTGATAC+AGG + chr3_4:71024969-71024988 None:intergenic 35.0%
TTCCTATTCAATTGCAGGTT+TGG - chr3_4:71025206-71025225 Msa0519080:intron 35.0%
TCCTATTCAATTGCAGGTTT+GGG - chr3_4:71025207-71025226 Msa0519080:intron 35.0%
GTATCATTAAAACAGGAGGT+CGG + chr3_4:71025268-71025287 None:intergenic 35.0%
AGTGGCTGAATTACACATTA+TGG + chr3_4:71025382-71025401 None:intergenic 35.0%
!! ACTAGCTCTTTTATTGGCTA+TGG + chr3_4:71025492-71025511 None:intergenic 35.0%
!!! GTTTCTTTGTTTTTCTCGAC+CGG - chr3_4:71025510-71025529 Msa0519080:five_prime_UTR 35.0%
!!! TTTCTTTGTTTTTCTCGACC+GGG - chr3_4:71025511-71025530 Msa0519080:five_prime_UTR 35.0%
GAATTACATCGCAATTGTGA+AGG + chr3_4:71025645-71025664 None:intergenic 35.0%
TTCATTCATCCAGTCTAGAG+TGG + chr3_4:71021668-71021687 None:intergenic 40.0%
! GTTAGTTTCGTATTGGTCTG+TGG + chr3_4:71021703-71021722 None:intergenic 40.0%
TGTTGAGTGATTTCAGTGGA+TGG + chr3_4:71021822-71021841 None:intergenic 40.0%
GAATCCGATTCCAATTCCAA+TGG - chr3_4:71021932-71021951 Msa0519080:three_prime_UTR 40.0%
CCATCCATTGGAATTGGAAT+CGG + chr3_4:71021939-71021958 None:intergenic 40.0%
ACGATTCCATCCATTGGAAT+TGG + chr3_4:71021945-71021964 None:intergenic 40.0%
TTAGTCACTCAATCACTCAC+CGG - chr3_4:71022061-71022080 Msa0519080:CDS 40.0%
CTTGGAATACTGCATATCCA+TGG + chr3_4:71022161-71022180 None:intergenic 40.0%
CATGGATATGCAGTATTCCA+AGG - chr3_4:71022159-71022178 Msa0519080:intron 40.0%
GAAATAGTTATCAGGGTCTC+TGG + chr3_4:71022194-71022213 None:intergenic 40.0%
TGCTGACCTGCTCATAATAT+AGG + chr3_4:71022364-71022383 None:intergenic 40.0%
! CTTTATGATGCCAGGCTTTT+TGG - chr3_4:71022460-71022479 Msa0519080:CDS 40.0%
! TGATTCATTTTCCTGGGCAA+GGG + chr3_4:71022798-71022817 None:intergenic 40.0%
! ATGATTCATTTTCCTGGGCA+AGG + chr3_4:71022799-71022818 None:intergenic 40.0%
ACCTGAAAAACCTCTGCTTT+AGG - chr3_4:71022904-71022923 Msa0519080:intron 40.0%
! ACCTAAAGCAGAGGTTTTTC+AGG + chr3_4:71022908-71022927 None:intergenic 40.0%
AAGCTAATGACCTAAAGCAG+AGG + chr3_4:71022917-71022936 None:intergenic 40.0%
!! GGATTTATTTTCCTGGGCAA+GGG + chr3_4:71022944-71022963 None:intergenic 40.0%
!! AGGATTTATTTTCCTGGGCA+AGG + chr3_4:71022945-71022964 None:intergenic 40.0%
GCACAAATTGTTTGCATGAC+AGG + chr3_4:71022991-71023010 None:intergenic 40.0%
CTTCCTAGACAGAAATTGAG+TGG + chr3_4:71023057-71023076 None:intergenic 40.0%
GTGAGAGACAACTTGTAAAC+GGG - chr3_4:71023082-71023101 Msa0519080:intron 40.0%
ATCCCTATAATGTAGGGCAA+TGG + chr3_4:71023444-71023463 None:intergenic 40.0%
ACTGTCAGCAAAAGGAAGTT+AGG + chr3_4:71023548-71023567 None:intergenic 40.0%
TACATATGCCATCAGAGACA+TGG - chr3_4:71023572-71023591 Msa0519080:intron 40.0%
AAATTTCTGTGATCGGCCAA+AGG - chr3_4:71023605-71023624 Msa0519080:intron 40.0%
! CAATGACTTCTTCTGGTTGT+GGG + chr3_4:71023638-71023657 None:intergenic 40.0%
CACAACCAGAAGAAGTCATT+GGG - chr3_4:71023637-71023656 Msa0519080:intron 40.0%
ACAACCAGAAGAAGTCATTG+GGG - chr3_4:71023638-71023657 Msa0519080:intron 40.0%
AGACTCACACAAATGAAGCA+AGG - chr3_4:71023897-71023916 Msa0519080:intron 40.0%
CAGTCTTCAATAGCTGTAGA+TGG - chr3_4:71023940-71023959 Msa0519080:intron 40.0%
TGCAGATCTAGCCATTTCTT+GGG + chr3_4:71023977-71023996 None:intergenic 40.0%
TTGCAGATCTAGCCATTTCT+TGG + chr3_4:71023978-71023997 None:intergenic 40.0%
! TATACGACAAAGTGCTACAG+AGG - chr3_4:71024060-71024079 Msa0519080:intron 40.0%
CAATTGATACCAAGGTGCAT+TGG + chr3_4:71024092-71024111 None:intergenic 40.0%
ATTCCATGACCCACTAAAGT+AGG - chr3_4:71024201-71024220 Msa0519080:intron 40.0%
GGTTCTACATCCTACTTTAG+TGG + chr3_4:71024214-71024233 None:intergenic 40.0%
AACCCTAGAATTCTATCGAC+CGG - chr3_4:71024230-71024249 Msa0519080:intron 40.0%
AACCGGTCGATAGAATTCTA+GGG + chr3_4:71024235-71024254 None:intergenic 40.0%
AAACCGGTCGATAGAATTCT+AGG + chr3_4:71024236-71024255 None:intergenic 40.0%
! AGAATTCTATCGACCGGTTT+AGG - chr3_4:71024236-71024255 Msa0519080:intron 40.0%
CATATCTCTCATCCAGTTGA+AGG + chr3_4:71024329-71024348 None:intergenic 40.0%
CTTCAACTGGATGAGAGATA+TGG - chr3_4:71024327-71024346 Msa0519080:intron 40.0%
ATTGATGAGAGAAAATGGGG+AGG - chr3_4:71024388-71024407 Msa0519080:intron 40.0%
TTGATGAGAGAAAATGGGGA+GGG - chr3_4:71024389-71024408 Msa0519080:intron 40.0%
TCAAACTATGGAATGGAGCA+AGG + chr3_4:71024472-71024491 None:intergenic 40.0%
! AGTCAAGGTATTCAGACACA+CGG + chr3_4:71024719-71024738 None:intergenic 40.0%
GGAAAACGCTGCTTATATGA+AGG - chr3_4:71024864-71024883 Msa0519080:intron 40.0%
CATGAATTAGGAAATCCTCC+GGG + chr3_4:71024900-71024919 None:intergenic 40.0%
CCATGAATTAGGAAATCCTC+CGG + chr3_4:71024901-71024920 None:intergenic 40.0%
CGGAGGATTTCCTAATTCAT+GGG - chr3_4:71024899-71024918 Msa0519080:intron 40.0%
AAATGAGGGTAATAAGACGG+TGG + chr3_4:71024941-71024960 None:intergenic 40.0%
CTACTGTACTTCAGAACTTG+CGG - chr3_4:71025019-71025038 Msa0519080:CDS 40.0%
AGAACAATGAGATACACACC+TGG - chr3_4:71025048-71025067 Msa0519080:intron 40.0%
GAACAATGAGATACACACCT+GGG - chr3_4:71025049-71025068 Msa0519080:intron 40.0%
CCTATTCAATTGCAGGTTTG+GGG - chr3_4:71025208-71025227 Msa0519080:intron 40.0%
TCTATTCTTCTATCCATGGG+TGG + chr3_4:71025319-71025338 None:intergenic 40.0%
ACCCATGGATAGAAGAATAG+AGG - chr3_4:71025318-71025337 Msa0519080:CDS 40.0%
CCCTCTATTCTTCTATCCAT+GGG + chr3_4:71025322-71025341 None:intergenic 40.0%
CCCATGGATAGAAGAATAGA+GGG - chr3_4:71025319-71025338 Msa0519080:CDS 40.0%
ACCCTCTATTCTTCTATCCA+TGG + chr3_4:71025323-71025342 None:intergenic 40.0%
TTCATTCATCCAGTCTAGAG+TGG + chr3_4:71021668-71021687 None:intergenic 40.0%
! GTTAGTTTCGTATTGGTCTG+TGG + chr3_4:71021703-71021722 None:intergenic 40.0%
TGTTGAGTGATTTCAGTGGA+TGG + chr3_4:71021822-71021841 None:intergenic 40.0%
GAATCCGATTCCAATTCCAA+TGG - chr3_4:71021932-71021951 Msa0519080:three_prime_UTR 40.0%
CCATCCATTGGAATTGGAAT+CGG + chr3_4:71021939-71021958 None:intergenic 40.0%
ACGATTCCATCCATTGGAAT+TGG + chr3_4:71021945-71021964 None:intergenic 40.0%
TTAGTCACTCAATCACTCAC+CGG - chr3_4:71022061-71022080 Msa0519080:CDS 40.0%
CTTGGAATACTGCATATCCA+TGG + chr3_4:71022161-71022180 None:intergenic 40.0%
CATGGATATGCAGTATTCCA+AGG - chr3_4:71022159-71022178 Msa0519080:intron 40.0%
GAAATAGTTATCAGGGTCTC+TGG + chr3_4:71022194-71022213 None:intergenic 40.0%
TGCTGACCTGCTCATAATAT+AGG + chr3_4:71022364-71022383 None:intergenic 40.0%
! CTTTATGATGCCAGGCTTTT+TGG - chr3_4:71022460-71022479 Msa0519080:CDS 40.0%
! TGATTCATTTTCCTGGGCAA+GGG + chr3_4:71022798-71022817 None:intergenic 40.0%
! ATGATTCATTTTCCTGGGCA+AGG + chr3_4:71022799-71022818 None:intergenic 40.0%
ACCTGAAAAACCTCTGCTTT+AGG - chr3_4:71022904-71022923 Msa0519080:intron 40.0%
! ACCTAAAGCAGAGGTTTTTC+AGG + chr3_4:71022908-71022927 None:intergenic 40.0%
AAGCTAATGACCTAAAGCAG+AGG + chr3_4:71022917-71022936 None:intergenic 40.0%
!! GGATTTATTTTCCTGGGCAA+GGG + chr3_4:71022944-71022963 None:intergenic 40.0%
!! AGGATTTATTTTCCTGGGCA+AGG + chr3_4:71022945-71022964 None:intergenic 40.0%
GCACAAATTGTTTGCATGAC+AGG + chr3_4:71022991-71023010 None:intergenic 40.0%
CTTCCTAGACAGAAATTGAG+TGG + chr3_4:71023057-71023076 None:intergenic 40.0%
GTGAGAGACAACTTGTAAAC+GGG - chr3_4:71023082-71023101 Msa0519080:intron 40.0%
ATCCCTATAATGTAGGGCAA+TGG + chr3_4:71023444-71023463 None:intergenic 40.0%
ACTGTCAGCAAAAGGAAGTT+AGG + chr3_4:71023548-71023567 None:intergenic 40.0%
TACATATGCCATCAGAGACA+TGG - chr3_4:71023572-71023591 Msa0519080:intron 40.0%
AAATTTCTGTGATCGGCCAA+AGG - chr3_4:71023605-71023624 Msa0519080:intron 40.0%
! CAATGACTTCTTCTGGTTGT+GGG + chr3_4:71023638-71023657 None:intergenic 40.0%
CACAACCAGAAGAAGTCATT+GGG - chr3_4:71023637-71023656 Msa0519080:intron 40.0%
ACAACCAGAAGAAGTCATTG+GGG - chr3_4:71023638-71023657 Msa0519080:intron 40.0%
AGACTCACACAAATGAAGCA+AGG - chr3_4:71023897-71023916 Msa0519080:intron 40.0%
CAGTCTTCAATAGCTGTAGA+TGG - chr3_4:71023940-71023959 Msa0519080:intron 40.0%
TGCAGATCTAGCCATTTCTT+GGG + chr3_4:71023977-71023996 None:intergenic 40.0%
TTGCAGATCTAGCCATTTCT+TGG + chr3_4:71023978-71023997 None:intergenic 40.0%
! TATACGACAAAGTGCTACAG+AGG - chr3_4:71024060-71024079 Msa0519080:intron 40.0%
CAATTGATACCAAGGTGCAT+TGG + chr3_4:71024092-71024111 None:intergenic 40.0%
ATTCCATGACCCACTAAAGT+AGG - chr3_4:71024201-71024220 Msa0519080:intron 40.0%
GGTTCTACATCCTACTTTAG+TGG + chr3_4:71024214-71024233 None:intergenic 40.0%
AACCCTAGAATTCTATCGAC+CGG - chr3_4:71024230-71024249 Msa0519080:intron 40.0%
AACCGGTCGATAGAATTCTA+GGG + chr3_4:71024235-71024254 None:intergenic 40.0%
AAACCGGTCGATAGAATTCT+AGG + chr3_4:71024236-71024255 None:intergenic 40.0%
! AGAATTCTATCGACCGGTTT+AGG - chr3_4:71024236-71024255 Msa0519080:intron 40.0%
CATATCTCTCATCCAGTTGA+AGG + chr3_4:71024329-71024348 None:intergenic 40.0%
CTTCAACTGGATGAGAGATA+TGG - chr3_4:71024327-71024346 Msa0519080:intron 40.0%
ATTGATGAGAGAAAATGGGG+AGG - chr3_4:71024388-71024407 Msa0519080:intron 40.0%
TTGATGAGAGAAAATGGGGA+GGG - chr3_4:71024389-71024408 Msa0519080:intron 40.0%
TCAAACTATGGAATGGAGCA+AGG + chr3_4:71024472-71024491 None:intergenic 40.0%
! AGTCAAGGTATTCAGACACA+CGG + chr3_4:71024719-71024738 None:intergenic 40.0%
GGAAAACGCTGCTTATATGA+AGG - chr3_4:71024864-71024883 Msa0519080:intron 40.0%
CATGAATTAGGAAATCCTCC+GGG + chr3_4:71024900-71024919 None:intergenic 40.0%
CCATGAATTAGGAAATCCTC+CGG + chr3_4:71024901-71024920 None:intergenic 40.0%
CGGAGGATTTCCTAATTCAT+GGG - chr3_4:71024899-71024918 Msa0519080:intron 40.0%
AAATGAGGGTAATAAGACGG+TGG + chr3_4:71024941-71024960 None:intergenic 40.0%
CTACTGTACTTCAGAACTTG+CGG - chr3_4:71025019-71025038 Msa0519080:CDS 40.0%
AGAACAATGAGATACACACC+TGG - chr3_4:71025048-71025067 Msa0519080:intron 40.0%
GAACAATGAGATACACACCT+GGG - chr3_4:71025049-71025068 Msa0519080:intron 40.0%
CCTATTCAATTGCAGGTTTG+GGG - chr3_4:71025208-71025227 Msa0519080:intron 40.0%
TCTATTCTTCTATCCATGGG+TGG + chr3_4:71025319-71025338 None:intergenic 40.0%
ACCCATGGATAGAAGAATAG+AGG - chr3_4:71025318-71025337 Msa0519080:CDS 40.0%
CCCTCTATTCTTCTATCCAT+GGG + chr3_4:71025322-71025341 None:intergenic 40.0%
CCCATGGATAGAAGAATAGA+GGG - chr3_4:71025319-71025338 Msa0519080:CDS 40.0%
ACCCTCTATTCTTCTATCCA+TGG + chr3_4:71025323-71025342 None:intergenic 40.0%
ACCACAAGAAGTGGAAAGTG+CGG + chr3_4:71021771-71021790 None:intergenic 45.0%
CCGATTCCAATTCCAATGGA+TGG - chr3_4:71021936-71021955 Msa0519080:three_prime_UTR 45.0%
TTGAGCACGATTCCATCCAT+TGG + chr3_4:71021951-71021970 None:intergenic 45.0%
AATGGATGGAATCGTGCTCA+AGG - chr3_4:71021950-71021969 Msa0519080:three_prime_UTR 45.0%
!! TGCTCAAGGATTAGCTCTCA+AGG - chr3_4:71021964-71021983 Msa0519080:three_prime_UTR 45.0%
! TATGATGCCAGGCTTTTTGG+AGG - chr3_4:71022463-71022482 Msa0519080:CDS 45.0%
TTAGCTAATAACCCTTGCCC+AGG - chr3_4:71022784-71022803 Msa0519080:intron 45.0%
CCTAGACAGAAATTGAGTGG+AGG + chr3_4:71023054-71023073 None:intergenic 45.0%
CCTCCACTCAATTTCTGTCT+AGG - chr3_4:71023051-71023070 Msa0519080:intron 45.0%
AACACGAGAGGATCCATTCT+AGG - chr3_4:71023128-71023147 Msa0519080:intron 45.0%
TTACGTATACATGGCGATGC+AGG - chr3_4:71023300-71023319 Msa0519080:intron 45.0%
TACATGGCGATGCAGGAATT+AGG - chr3_4:71023307-71023326 Msa0519080:intron 45.0%
ACATGGCGATGCAGGAATTA+GGG - chr3_4:71023308-71023327 Msa0519080:intron 45.0%
ATATGCCATCAGAGACATGG+AGG - chr3_4:71023575-71023594 Msa0519080:intron 45.0%
GTATTCCTCCATGTCTCTGA+TGG + chr3_4:71023583-71023602 None:intergenic 45.0%
! CCAATGACTTCTTCTGGTTG+TGG + chr3_4:71023639-71023658 None:intergenic 45.0%
CCACAACCAGAAGAAGTCAT+TGG - chr3_4:71023636-71023655 Msa0519080:intron 45.0%
CTTACCCCAATGACTTCTTC+TGG + chr3_4:71023645-71023664 None:intergenic 45.0%
ATTCCTGGAGCTAAGATCAC+AGG + chr3_4:71023692-71023711 None:intergenic 45.0%
ATACCAAGGTGCATTGGACT+CGG + chr3_4:71024086-71024105 None:intergenic 45.0%
! TTCTGGGGGAAAGGAAAAAC+TGG + chr3_4:71024153-71024172 None:intergenic 45.0%
! CATCCTACTTTAGTGGGTCA+TGG + chr3_4:71024207-71024226 None:intergenic 45.0%
! ATTCTATCGACCGGTTTAGG+TGG - chr3_4:71024239-71024258 Msa0519080:intron 45.0%
ATCACCCAAACCACCTAAAC+CGG + chr3_4:71024252-71024271 None:intergenic 45.0%
AATTAGGAAATCCTCCGGGT+GGG + chr3_4:71024896-71024915 None:intergenic 45.0%
CCGGAGGATTTCCTAATTCA+TGG - chr3_4:71024898-71024917 Msa0519080:intron 45.0%
!! CGCAAGTTCTGAAGTACAGT+AGG + chr3_4:71025021-71025040 None:intergenic 45.0%
ATGAGATACACACCTGGGAT+CGG - chr3_4:71025054-71025073 Msa0519080:intron 45.0%
! GATCGGGGTTATGATGATGA+TGG - chr3_4:71025071-71025090 Msa0519080:intron 45.0%
CCCCAAACCTGCAATTGAAT+AGG + chr3_4:71025211-71025230 None:intergenic 45.0%
CAGGTTTGGGGACAAAAAGA+AGG - chr3_4:71025220-71025239 Msa0519080:intron 45.0%
ATTCTTCTATCCATGGGTGG+TGG + chr3_4:71025316-71025335 None:intergenic 45.0%
ACCACAAGAAGTGGAAAGTG+CGG + chr3_4:71021771-71021790 None:intergenic 45.0%
CCGATTCCAATTCCAATGGA+TGG - chr3_4:71021936-71021955 Msa0519080:three_prime_UTR 45.0%
TTGAGCACGATTCCATCCAT+TGG + chr3_4:71021951-71021970 None:intergenic 45.0%
AATGGATGGAATCGTGCTCA+AGG - chr3_4:71021950-71021969 Msa0519080:three_prime_UTR 45.0%
!! TGCTCAAGGATTAGCTCTCA+AGG - chr3_4:71021964-71021983 Msa0519080:three_prime_UTR 45.0%
! TATGATGCCAGGCTTTTTGG+AGG - chr3_4:71022463-71022482 Msa0519080:CDS 45.0%
TTAGCTAATAACCCTTGCCC+AGG - chr3_4:71022784-71022803 Msa0519080:intron 45.0%
CCTAGACAGAAATTGAGTGG+AGG + chr3_4:71023054-71023073 None:intergenic 45.0%
CCTCCACTCAATTTCTGTCT+AGG - chr3_4:71023051-71023070 Msa0519080:intron 45.0%
AACACGAGAGGATCCATTCT+AGG - chr3_4:71023128-71023147 Msa0519080:intron 45.0%
TTACGTATACATGGCGATGC+AGG - chr3_4:71023300-71023319 Msa0519080:intron 45.0%
TACATGGCGATGCAGGAATT+AGG - chr3_4:71023307-71023326 Msa0519080:intron 45.0%
ACATGGCGATGCAGGAATTA+GGG - chr3_4:71023308-71023327 Msa0519080:intron 45.0%
ATATGCCATCAGAGACATGG+AGG - chr3_4:71023575-71023594 Msa0519080:intron 45.0%
GTATTCCTCCATGTCTCTGA+TGG + chr3_4:71023583-71023602 None:intergenic 45.0%
! CCAATGACTTCTTCTGGTTG+TGG + chr3_4:71023639-71023658 None:intergenic 45.0%
CCACAACCAGAAGAAGTCAT+TGG - chr3_4:71023636-71023655 Msa0519080:intron 45.0%
CTTACCCCAATGACTTCTTC+TGG + chr3_4:71023645-71023664 None:intergenic 45.0%
ATTCCTGGAGCTAAGATCAC+AGG + chr3_4:71023692-71023711 None:intergenic 45.0%
ATACCAAGGTGCATTGGACT+CGG + chr3_4:71024086-71024105 None:intergenic 45.0%
! TTCTGGGGGAAAGGAAAAAC+TGG + chr3_4:71024153-71024172 None:intergenic 45.0%
! CATCCTACTTTAGTGGGTCA+TGG + chr3_4:71024207-71024226 None:intergenic 45.0%
! ATTCTATCGACCGGTTTAGG+TGG - chr3_4:71024239-71024258 Msa0519080:intron 45.0%
ATCACCCAAACCACCTAAAC+CGG + chr3_4:71024252-71024271 None:intergenic 45.0%
AATTAGGAAATCCTCCGGGT+GGG + chr3_4:71024896-71024915 None:intergenic 45.0%
CCGGAGGATTTCCTAATTCA+TGG - chr3_4:71024898-71024917 Msa0519080:intron 45.0%
!! CGCAAGTTCTGAAGTACAGT+AGG + chr3_4:71025021-71025040 None:intergenic 45.0%
ATGAGATACACACCTGGGAT+CGG - chr3_4:71025054-71025073 Msa0519080:intron 45.0%
! GATCGGGGTTATGATGATGA+TGG - chr3_4:71025071-71025090 Msa0519080:intron 45.0%
CCCCAAACCTGCAATTGAAT+AGG + chr3_4:71025211-71025230 None:intergenic 45.0%
CAGGTTTGGGGACAAAAAGA+AGG - chr3_4:71025220-71025239 Msa0519080:intron 45.0%
ATTCTTCTATCCATGGGTGG+TGG + chr3_4:71025316-71025335 None:intergenic 45.0%
!!! TTTTATTTTTTTTTAATTTC+TGG - chr3_4:71024645-71024664 Msa0519080:CDS 5.0%
!!! TTTTATTTTTTTTTAATTTC+TGG - chr3_4:71024645-71024664 Msa0519080:CDS 5.0%
AGAGATGAGGGAGAATCCAG+CGG + chr3_4:71021636-71021655 None:intergenic 50.0%
TGGAGTAGAGCCAGAGATGA+GGG + chr3_4:71021648-71021667 None:intergenic 50.0%
TGGAAGCAGCCAAATAGCGA+GGG + chr3_4:71021802-71021821 None:intergenic 50.0%
ATGGAAGCAGCCAAATAGCG+AGG + chr3_4:71021803-71021822 None:intergenic 50.0%
CTCAAGGCTCTCTTACTCCT+CGG - chr3_4:71021980-71021999 Msa0519080:exon 50.0%
TTCGTAAGTCTACCACTCGC+TGG - chr3_4:71022026-71022045 Msa0519080:CDS 50.0%
TCGTAAGTCTACCACTCGCT+GGG - chr3_4:71022027-71022046 Msa0519080:CDS 50.0%
TCAATCACTCACCGGCGAAA+AGG - chr3_4:71022069-71022088 Msa0519080:CDS 50.0%
! GAGGAAAAGGACCTTTTCGC+CGG + chr3_4:71022083-71022102 None:intergenic 50.0%
! TATCAGGGTCTCTGGAAGCT+TGG + chr3_4:71022186-71022205 None:intergenic 50.0%
AGTCTACCAACCTGGCGAAA+GGG + chr3_4:71022501-71022520 None:intergenic 50.0%
TAGTCTACCAACCTGGCGAA+AGG + chr3_4:71022502-71022521 None:intergenic 50.0%
TTAGCTTACAACCCTTGCCC+AGG - chr3_4:71022930-71022949 Msa0519080:intron 50.0%
GCTATGCCTTCGTTGTGAAG+AGG - chr3_4:71023226-71023245 Msa0519080:intron 50.0%
CATGGCGATGCAGGAATTAG+GGG - chr3_4:71023309-71023328 Msa0519080:intron 50.0%
ATGGCGATGCAGGAATTAGG+GGG - chr3_4:71023310-71023329 Msa0519080:intron 50.0%
CATCCTGTGATCTTAGCTCC+AGG - chr3_4:71023686-71023705 Msa0519080:intron 50.0%
! CTGCTGCTGAAGCAACGTTT+TGG - chr3_4:71024021-71024040 Msa0519080:intron 50.0%
! ATCGACCGGTTTAGGTGGTT+TGG - chr3_4:71024244-71024263 Msa0519080:intron 50.0%
! TCGACCGGTTTAGGTGGTTT+GGG - chr3_4:71024245-71024264 Msa0519080:intron 50.0%
AGAGAAAATGGGGAGGGAGA+TGG - chr3_4:71024395-71024414 Msa0519080:intron 50.0%
! CATCTCAAGCGTTGTTCACG+TGG - chr3_4:71024843-71024862 Msa0519080:intron 50.0%
TATGAAGGTTCAACCCCACC+CGG - chr3_4:71024879-71024898 Msa0519080:intron 50.0%
ATTAGGAAATCCTCCGGGTG+GGG + chr3_4:71024895-71024914 None:intergenic 50.0%
GAATTAGGAAATCCTCCGGG+TGG + chr3_4:71024897-71024916 None:intergenic 50.0%
TGAGATACACACCTGGGATC+GGG - chr3_4:71025055-71025074 Msa0519080:intron 50.0%
ATCATCATAACCCCGATCCC+AGG + chr3_4:71025069-71025088 None:intergenic 50.0%
TTAAAACAGGAGGTCGGTGC+AGG + chr3_4:71025262-71025281 None:intergenic 50.0%
!! TTCTATCCATGGGTGGTGGA+GGG + chr3_4:71025312-71025331 None:intergenic 50.0%
AGAGATGAGGGAGAATCCAG+CGG + chr3_4:71021636-71021655 None:intergenic 50.0%
TGGAGTAGAGCCAGAGATGA+GGG + chr3_4:71021648-71021667 None:intergenic 50.0%
TGGAAGCAGCCAAATAGCGA+GGG + chr3_4:71021802-71021821 None:intergenic 50.0%
ATGGAAGCAGCCAAATAGCG+AGG + chr3_4:71021803-71021822 None:intergenic 50.0%
CTCAAGGCTCTCTTACTCCT+CGG - chr3_4:71021980-71021999 Msa0519080:exon 50.0%
TTCGTAAGTCTACCACTCGC+TGG - chr3_4:71022026-71022045 Msa0519080:CDS 50.0%
TCGTAAGTCTACCACTCGCT+GGG - chr3_4:71022027-71022046 Msa0519080:CDS 50.0%
TCAATCACTCACCGGCGAAA+AGG - chr3_4:71022069-71022088 Msa0519080:CDS 50.0%
! GAGGAAAAGGACCTTTTCGC+CGG + chr3_4:71022083-71022102 None:intergenic 50.0%
! TATCAGGGTCTCTGGAAGCT+TGG + chr3_4:71022186-71022205 None:intergenic 50.0%
AGTCTACCAACCTGGCGAAA+GGG + chr3_4:71022501-71022520 None:intergenic 50.0%
TAGTCTACCAACCTGGCGAA+AGG + chr3_4:71022502-71022521 None:intergenic 50.0%
TTAGCTTACAACCCTTGCCC+AGG - chr3_4:71022930-71022949 Msa0519080:intron 50.0%
GCTATGCCTTCGTTGTGAAG+AGG - chr3_4:71023226-71023245 Msa0519080:intron 50.0%
CATGGCGATGCAGGAATTAG+GGG - chr3_4:71023309-71023328 Msa0519080:intron 50.0%
ATGGCGATGCAGGAATTAGG+GGG - chr3_4:71023310-71023329 Msa0519080:intron 50.0%
CATCCTGTGATCTTAGCTCC+AGG - chr3_4:71023686-71023705 Msa0519080:intron 50.0%
! CTGCTGCTGAAGCAACGTTT+TGG - chr3_4:71024021-71024040 Msa0519080:intron 50.0%
! ATCGACCGGTTTAGGTGGTT+TGG - chr3_4:71024244-71024263 Msa0519080:intron 50.0%
! TCGACCGGTTTAGGTGGTTT+GGG - chr3_4:71024245-71024264 Msa0519080:intron 50.0%
AGAGAAAATGGGGAGGGAGA+TGG - chr3_4:71024395-71024414 Msa0519080:intron 50.0%
! CATCTCAAGCGTTGTTCACG+TGG - chr3_4:71024843-71024862 Msa0519080:intron 50.0%
TATGAAGGTTCAACCCCACC+CGG - chr3_4:71024879-71024898 Msa0519080:intron 50.0%
ATTAGGAAATCCTCCGGGTG+GGG + chr3_4:71024895-71024914 None:intergenic 50.0%
GAATTAGGAAATCCTCCGGG+TGG + chr3_4:71024897-71024916 None:intergenic 50.0%
TGAGATACACACCTGGGATC+GGG - chr3_4:71025055-71025074 Msa0519080:intron 50.0%
ATCATCATAACCCCGATCCC+AGG + chr3_4:71025069-71025088 None:intergenic 50.0%
TTAAAACAGGAGGTCGGTGC+AGG + chr3_4:71025262-71025281 None:intergenic 50.0%
!! TTCTATCCATGGGTGGTGGA+GGG + chr3_4:71025312-71025331 None:intergenic 50.0%
GCTGGATTCTCCCTCATCTC+TGG - chr3_4:71021635-71021654 Msa0519080:three_prime_UTR 55.0%
GTGGAGTAGAGCCAGAGATG+AGG + chr3_4:71021649-71021668 None:intergenic 55.0%
GGCTCTACTCCACTCTAGAC+TGG - chr3_4:71021656-71021675 Msa0519080:three_prime_UTR 55.0%
GCCGCACTTTCCACTTCTTG+TGG - chr3_4:71021767-71021786 Msa0519080:three_prime_UTR 55.0%
GCGGCTACAACCACAAGAAG+TGG + chr3_4:71021780-71021799 None:intergenic 55.0%
TTGTAGCCGCCCTCGCTATT+TGG - chr3_4:71021790-71021809 Msa0519080:three_prime_UTR 55.0%
AAGCAGCCAAATAGCGAGGG+CGG + chr3_4:71021799-71021818 None:intergenic 55.0%
AAGGCTCTCTTACTCCTCGG+TGG - chr3_4:71021983-71022002 Msa0519080:exon 55.0%
! GTCTCTGGAAGCTTGGTCCT+TGG + chr3_4:71022179-71022198 None:intergenic 55.0%
CCATCAACTAGCTCAGCAGC+TGG + chr3_4:71022332-71022351 None:intergenic 55.0%
CCAGCTGCTGAGCTAGTTGA+TGG - chr3_4:71022329-71022348 Msa0519080:intron 55.0%
GTGGACTCCTCCAAAAAGCC+TGG + chr3_4:71022473-71022492 None:intergenic 55.0%
TCCACAGAAACCCTTTCGCC+AGG - chr3_4:71022488-71022507 Msa0519080:CDS 55.0%
ACCTGGCGAAAGGGTTTCTG+TGG + chr3_4:71022492-71022511 None:intergenic 55.0%
CAGAAACCCTTTCGCCAGGT+TGG - chr3_4:71022492-71022511 Msa0519080:CDS 55.0%
! GGTGGTTTGGGTGATGCAGT+TGG - chr3_4:71024257-71024276 Msa0519080:intron 55.0%
AAATGGGGAGGGAGATGGAG+AGG - chr3_4:71024400-71024419 Msa0519080:intron 55.0%
GAGATACACACCTGGGATCG+GGG - chr3_4:71025056-71025075 Msa0519080:intron 55.0%
GGTGCAGGCTTGAACTCGTA+AGG + chr3_4:71025247-71025266 None:intergenic 55.0%
GGTGGAGGGGGGAAATTCAA+GGG + chr3_4:71025298-71025317 None:intergenic 55.0%
TGGTGGAGGGGGGAAATTCA+AGG + chr3_4:71025299-71025318 None:intergenic 55.0%
!! TCTATCCATGGGTGGTGGAG+GGG + chr3_4:71025311-71025330 None:intergenic 55.0%
! CTTCTATCCATGGGTGGTGG+AGG + chr3_4:71025313-71025332 None:intergenic 55.0%
GCTGGATTCTCCCTCATCTC+TGG - chr3_4:71021635-71021654 Msa0519080:three_prime_UTR 55.0%
GTGGAGTAGAGCCAGAGATG+AGG + chr3_4:71021649-71021668 None:intergenic 55.0%
GGCTCTACTCCACTCTAGAC+TGG - chr3_4:71021656-71021675 Msa0519080:three_prime_UTR 55.0%
GCCGCACTTTCCACTTCTTG+TGG - chr3_4:71021767-71021786 Msa0519080:three_prime_UTR 55.0%
GCGGCTACAACCACAAGAAG+TGG + chr3_4:71021780-71021799 None:intergenic 55.0%
TTGTAGCCGCCCTCGCTATT+TGG - chr3_4:71021790-71021809 Msa0519080:three_prime_UTR 55.0%
AAGCAGCCAAATAGCGAGGG+CGG + chr3_4:71021799-71021818 None:intergenic 55.0%
AAGGCTCTCTTACTCCTCGG+TGG - chr3_4:71021983-71022002 Msa0519080:exon 55.0%
! GTCTCTGGAAGCTTGGTCCT+TGG + chr3_4:71022179-71022198 None:intergenic 55.0%
CCATCAACTAGCTCAGCAGC+TGG + chr3_4:71022332-71022351 None:intergenic 55.0%
CCAGCTGCTGAGCTAGTTGA+TGG - chr3_4:71022329-71022348 Msa0519080:intron 55.0%
GTGGACTCCTCCAAAAAGCC+TGG + chr3_4:71022473-71022492 None:intergenic 55.0%
TCCACAGAAACCCTTTCGCC+AGG - chr3_4:71022488-71022507 Msa0519080:CDS 55.0%
ACCTGGCGAAAGGGTTTCTG+TGG + chr3_4:71022492-71022511 None:intergenic 55.0%
CAGAAACCCTTTCGCCAGGT+TGG - chr3_4:71022492-71022511 Msa0519080:CDS 55.0%
! GGTGGTTTGGGTGATGCAGT+TGG - chr3_4:71024257-71024276 Msa0519080:intron 55.0%
AAATGGGGAGGGAGATGGAG+AGG - chr3_4:71024400-71024419 Msa0519080:intron 55.0%
GAGATACACACCTGGGATCG+GGG - chr3_4:71025056-71025075 Msa0519080:intron 55.0%
GGTGCAGGCTTGAACTCGTA+AGG + chr3_4:71025247-71025266 None:intergenic 55.0%
GGTGGAGGGGGGAAATTCAA+GGG + chr3_4:71025298-71025317 None:intergenic 55.0%
TGGTGGAGGGGGGAAATTCA+AGG + chr3_4:71025299-71025318 None:intergenic 55.0%
!! TCTATCCATGGGTGGTGGAG+GGG + chr3_4:71025311-71025330 None:intergenic 55.0%
! CTTCTATCCATGGGTGGTGG+AGG + chr3_4:71025313-71025332 None:intergenic 55.0%
ACGAGTATGGTCCCAGCGAG+TGG + chr3_4:71022041-71022060 None:intergenic 60.0%
!! GGTTGTGGGCGCTGATCCTT+TGG + chr3_4:71023624-71023643 None:intergenic 60.0%
AGGCCGAGTCCAATGCACCT+TGG - chr3_4:71024080-71024099 Msa0519080:intron 60.0%
!! TATCCATGGGTGGTGGAGGG+GGG + chr3_4:71025309-71025328 None:intergenic 60.0%
!! CTATCCATGGGTGGTGGAGG+GGG + chr3_4:71025310-71025329 None:intergenic 60.0%
ACGAGTATGGTCCCAGCGAG+TGG + chr3_4:71022041-71022060 None:intergenic 60.0%
!! GGTTGTGGGCGCTGATCCTT+TGG + chr3_4:71023624-71023643 None:intergenic 60.0%
AGGCCGAGTCCAATGCACCT+TGG - chr3_4:71024080-71024099 Msa0519080:intron 60.0%
!! TATCCATGGGTGGTGGAGGG+GGG + chr3_4:71025309-71025328 None:intergenic 60.0%
!! CTATCCATGGGTGGTGGAGG+GGG + chr3_4:71025310-71025329 None:intergenic 60.0%
!! TGACGAGAAGAGCGCCACCG+AGG + chr3_4:71022000-71022019 None:intergenic 65.0%
GGGGAGGGAGATGGAGAGGA+TGG - chr3_4:71024404-71024423 Msa0519080:intron 65.0%
GAAGGTTCAACCCCACCCGG+AGG - chr3_4:71024882-71024901 Msa0519080:intron 65.0%
TTTCCCCCCTCCACCACCCA+TGG - chr3_4:71025303-71025322 Msa0519080:CDS 65.0%
!! TGACGAGAAGAGCGCCACCG+AGG + chr3_4:71022000-71022019 None:intergenic 65.0%
GGGGAGGGAGATGGAGAGGA+TGG - chr3_4:71024404-71024423 Msa0519080:intron 65.0%
GAAGGTTCAACCCCACCCGG+AGG - chr3_4:71024882-71024901 Msa0519080:intron 65.0%
TTTCCCCCCTCCACCACCCA+TGG - chr3_4:71025303-71025322 Msa0519080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 71021622 71025732 71021622 ID=Msa0519080;Name=Msa0519080
chr3_4 mRNA 71021622 71025732 71021622 ID=Msa0519080-mRNA-1;Parent=Msa0519080;Name=Msa0519080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=295|1|1|1|1|1|9|369|267
chr3_4 exon 71021622 71022131 71021622 ID=Msa0519080-mRNA-1:exon:19488;Parent=Msa0519080-mRNA-1
chr3_4 exon 71022254 71022346 71022254 ID=Msa0519080-mRNA-1:exon:19487;Parent=Msa0519080-mRNA-1
chr3_4 exon 71022434 71022538 71022434 ID=Msa0519080-mRNA-1:exon:19486;Parent=Msa0519080-mRNA-1
chr3_4 exon 71023695 71023787 71023695 ID=Msa0519080-mRNA-1:exon:19485;Parent=Msa0519080-mRNA-1
chr3_4 exon 71024635 71024685 71024635 ID=Msa0519080-mRNA-1:exon:19484;Parent=Msa0519080-mRNA-1
chr3_4 exon 71024845 71024880 71024845 ID=Msa0519080-mRNA-1:exon:19483;Parent=Msa0519080-mRNA-1
chr3_4 exon 71024978 71025038 71024978 ID=Msa0519080-mRNA-1:exon:19482;Parent=Msa0519080-mRNA-1
chr3_4 exon 71025133 71025182 71025133 ID=Msa0519080-mRNA-1:exon:19481;Parent=Msa0519080-mRNA-1
chr3_4 exon 71025264 71025732 71025264 ID=Msa0519080-mRNA-1:exon:19480;Parent=Msa0519080-mRNA-1
chr3_4 five_prime_UTR 71025438 71025732 71025438 ID=Msa0519080-mRNA-1:five_prime_utr;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71025264 71025437 71025264 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71025133 71025182 71025133 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71024978 71025038 71024978 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71024845 71024880 71024845 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71024635 71024685 71024635 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71023695 71023787 71023695 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71022434 71022538 71022434 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71022254 71022346 71022254 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 CDS 71021991 71022131 71021991 ID=Msa0519080-mRNA-1:cds;Parent=Msa0519080-mRNA-1
chr3_4 three_prime_UTR 71021622 71021990 71021622 ID=Msa0519080-mRNA-1:three_prime_utr;Parent=Msa0519080-mRNA-1
Gene Sequence

>Msa0519080

ATGTGTACGGAATCCGAATCCGATTCCAATTCCAATGGATGGAATCGTGCTCAAGGATTAGCTCTCAAGGCTCTCTTACTCCTCGGTGGCGCTCTTCTCGTCAAACGTCTTCGTAAGTCTACCACTCGCTGGGACCATACTCGTTTAGTCACTCAATCACTCACCGGCGAAAAGTATTCCAAGGACCAAGCTTCCAGAGACCCTGATAACTATTTCAATATTAGAATGCTTACATGTCCAGCTGCTGAGCTAGTTGATGGTTCAAATGTCCTATATTATGAGCAGGCTTTTTGGAGGAGTCCACAGAAACCCTTTCGCCAGAGGCTGTTAATGACGAAACCTTGTCCAAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATCAGAGACATGGAGGAATACAAAAATTTCTGTGATCGGCCAAAGGATCAGCGCCCACAACCAGAAGAAGTCATTGGGGATATTGGAGAACATTTGACAACGATACATCTCAAGCGTTGTTCACGTGGAAAACGCTGCTTATATGAAGGTTCAACCCCACCCGGAGGATTTCCTAATTCATGGAATGGAGCAACCTACTGTACTTCAGAACTTGCGGTTATGAAGAACAATGAGATACACACCTGGGATCGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGTCCTTACGAGTTCAAGCCTGCACCGACCTCCTGTTTTAATGATACATTTTCGCCCTTGAATTTCCCCCCTCCACCACCCATGGATAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAATGA

Protein sequence

>Msa0519080

MCTESESDSNSNGWNRAQGLALKALLLLGGALLVKRLRKSTTRWDHTRLVTQSLTGEKYSKDQASRDPDNYFNIRMLTCPAAELVDGSNVLYYEQAFWRSPQKPFRQRLLMTKPCPKELKCDVELSTYAIRDMEEYKNFCDRPKDQRPQPEEVIGDIGEHLTTIHLKRCSRGKRCLYEGSTPPGGFPNSWNGATYCTSELAVMKNNEIHTWDRGYDDDGNQVWGQKEGPYEFKPAPTSCFNDTFSPLNFPPPPPMDRRIEGSFVLQE*