Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552680 | XP_024638686.1 | 92.614 | 352 | 2 | 2 | 1 | 328 | 1 | 352 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552680 | sp|Q9ASU7|PPAN_ARATH | 68.942 | 293 | 62 | 2 | 13 | 282 | 17 | 303 | 2.07e-141 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552680 | A0A396IA18 | 92.614 | 352 | 2 | 2 | 1 | 328 | 1 | 352 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025730 | Msa0552680 | 0.804711 | 1.894526e-49 | -8.615850e-47 |
| Msa0047160 | Msa0552680 | 0.816976 | 4.188112e-52 | -8.615850e-47 |
| Msa0054440 | Msa0552680 | 0.813957 | 1.967673e-51 | -8.615850e-47 |
| Msa0094470 | Msa0552680 | 0.817248 | 3.638401e-52 | -8.615850e-47 |
| Msa0127020 | Msa0552680 | 0.803890 | 2.809250e-49 | -8.615850e-47 |
| Msa0146770 | Msa0552680 | 0.820306 | 7.355275e-53 | -8.615850e-47 |
| Msa0169280 | Msa0552680 | 0.800916 | 1.151311e-48 | -8.615850e-47 |
| Msa0189300 | Msa0552680 | 0.818743 | 1.671173e-52 | -8.615850e-47 |
| Msa0226470 | Msa0552680 | 0.800172 | 1.632540e-48 | -8.615850e-47 |
| Msa0231660 | Msa0552680 | 0.815858 | 7.451475e-52 | -8.615850e-47 |
| Msa0366890 | Msa0552680 | 0.815080 | 1.110187e-51 | -8.615850e-47 |
| Msa0385580 | Msa0552680 | 0.815119 | 1.088221e-51 | -8.615850e-47 |
| Msa0419520 | Msa0552680 | 0.800968 | 1.123549e-48 | -8.615850e-47 |
| Msa0422840 | Msa0552680 | 0.817918 | 2.570279e-52 | -8.615850e-47 |
| Msa0422920 | Msa0552680 | 0.817406 | 3.351975e-52 | -8.615850e-47 |
| Msa0458060 | Msa0552680 | 0.819477 | 1.137857e-52 | -8.615850e-47 |
| Msa0481280 | Msa0552680 | 0.813592 | 2.368094e-51 | -8.615850e-47 |
| Msa0309750 | Msa0552680 | 0.837945 | 3.853181e-57 | -8.615850e-47 |
| Msa0511490 | Msa0552680 | 0.827747 | 1.318977e-54 | -8.615850e-47 |
| Msa0542090 | Msa0552680 | 0.831420 | 1.685961e-55 | -8.615850e-47 |
| Msa0542130 | Msa0552680 | 0.833192 | 6.139839e-56 | -8.615850e-47 |
| Msa0550540 | Msa0552680 | 0.802297 | 5.998792e-49 | -8.615850e-47 |
| Msa0552680 | Msa0557070 | 0.800720 | 1.262562e-48 | -8.615850e-47 |
| Msa0552680 | Msa0558810 | 0.814590 | 1.425610e-51 | -8.615850e-47 |
| Msa0552680 | Msa0581280 | 0.808378 | 3.189521e-50 | -8.615850e-47 |
| Msa0552680 | Msa0605000 | 0.823333 | 1.465255e-53 | -8.615850e-47 |
| Msa0552680 | Msa0610430 | 0.801913 | 7.194679e-49 | -8.615850e-47 |
| Msa0552680 | Msa0615440 | 0.819116 | 1.375411e-52 | -8.615850e-47 |
| Msa0552680 | Msa0633840 | 0.804700 | 1.904407e-49 | -8.615850e-47 |
| Msa0552680 | Msa0685140 | 0.826960 | 2.035834e-54 | -8.615850e-47 |
| Msa0552680 | Msa0691290 | 0.843717 | 1.179749e-58 | -8.615850e-47 |
| Msa0552680 | Msa0691900 | 0.811734 | 6.037281e-51 | -8.615850e-47 |
| Msa0552680 | Msa0698060 | 0.812863 | 3.422461e-51 | -8.615850e-47 |
| Msa0552680 | Msa0698490 | 0.818792 | 1.629349e-52 | -8.615850e-47 |
| Msa0552680 | Msa0698660 | 0.819962 | 8.817285e-53 | -8.615850e-47 |
| Msa0552680 | Msa0711780 | 0.821156 | 4.690265e-53 | -8.615850e-47 |
| Msa0552680 | Msa0715650 | 0.817679 | 2.909660e-52 | -8.615850e-47 |
| Msa0552680 | Msa0772480 | 0.827708 | 1.347266e-54 | -8.615850e-47 |
| Msa0552680 | Msa0790850 | 0.800581 | 1.347438e-48 | -8.615850e-47 |
| Msa0552680 | Msa0794670 | 0.814414 | 1.559872e-51 | -8.615850e-47 |
| Msa0552680 | Msa0796440 | 0.801628 | 8.231723e-49 | -8.615850e-47 |
| Msa0552680 | Msa0798440 | 0.832325 | 1.008398e-55 | -8.615850e-47 |
| Msa0552680 | Msa0802410 | 0.806314 | 8.735407e-50 | -8.615850e-47 |
| Msa0552680 | Msa0830540 | 0.830774 | 2.429558e-55 | -8.615850e-47 |
| Msa0552680 | Msa0859180 | 0.830071 | 3.610847e-55 | -8.615850e-47 |
| Msa0552680 | Msa0902760 | 0.802491 | 5.469876e-49 | -8.615850e-47 |
| Msa0552680 | Msa0925770 | 0.818773 | 1.645302e-52 | -8.615850e-47 |
| Msa0552680 | Msa0945440 | 0.823218 | 1.559459e-53 | -8.615850e-47 |
| Msa0552680 | Msa1014420 | 0.809019 | 2.326707e-50 | -8.615850e-47 |
| Msa0552680 | Msa1055410 | 0.813039 | 3.131865e-51 | -8.615850e-47 |
| Msa0552680 | Msa1093530 | 0.801755 | 7.753892e-49 | -8.615850e-47 |
| Msa0552680 | Msa1133400 | 0.801954 | 7.055459e-49 | -8.615850e-47 |
| Msa0552680 | Msa1144040 | 0.806560 | 7.752508e-50 | -8.615850e-47 |
| Msa0552680 | Msa1209200 | 0.809198 | 2.130135e-50 | -8.615850e-47 |
| Msa0552680 | Msa1209760 | 0.814264 | 1.683609e-51 | -8.615850e-47 |
| Msa0552680 | Msa1217470 | 0.823665 | 1.225873e-53 | -8.615850e-47 |
| Msa0552680 | Msa1265630 | 0.817066 | 3.998420e-52 | -8.615850e-47 |
| Msa0552680 | Msa1340260 | 0.813698 | 2.243879e-51 | -8.615850e-47 |
| Msa0552680 | Msa1355700 | 0.801850 | 7.413042e-49 | -8.615850e-47 |
| Msa0552680 | Msa1371240 | 0.810241 | 1.270923e-50 | -8.615850e-47 |
| Msa0552680 | Msa1388860 | 0.802387 | 5.746311e-49 | -8.615850e-47 |
| Msa0552680 | Msa1394290 | 0.828880 | 7.030196e-55 | -8.615850e-47 |
| Msa0552680 | Msa1457920 | 0.820511 | 6.599991e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552680 | MtrunA17_Chr4g0038221 | 92.614 | 352 | 2 | 2 | 1 | 328 | 1 | 352 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552680 | AT5G61770.3 | 68.942 | 293 | 62 | 2 | 13 | 282 | 17 | 303 | 2.04e-142 | 406 |
| Msa0552680 | AT5G61770.2 | 68.942 | 293 | 62 | 2 | 13 | 282 | 17 | 303 | 2.04e-142 | 406 |
| Msa0552680 | AT5G61770.1 | 68.942 | 293 | 62 | 2 | 13 | 282 | 17 | 303 | 2.10e-142 | 406 |
Find 63 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACCAGATTGTGCTTTC+TGG | 0.110410 | 4_1:+49341468 | Msa0552680:intron |
| GAAGTCCTCTTCGACGAATT+TGG | 0.262207 | 4_1:+49342543 | Msa0552680:CDS |
| CTCTTCATCTTCATTATCAT+TGG | 0.273538 | 4_1:-49343354 | None:intergenic |
| TTATTCTTCTTGATAATAAC+AGG | 0.299950 | 4_1:-49338297 | None:intergenic |
| GGTATCTTCTTTCCAGTAAT+GGG | 0.301868 | 4_1:-49338351 | None:intergenic |
| AATGAACAACGAAAACTTTC+CGG | 0.311191 | 4_1:-49343430 | None:intergenic |
| AGAGACTTTCTGAATGTTGC+TGG | 0.315166 | 4_1:+49339768 | Msa0552680:CDS |
| AAACAGAGGAAGAATCAAAA+AGG | 0.315897 | 4_1:+49338264 | Msa0552680:intron |
| CCAAGTATTGATCCCATTAC+TGG | 0.333545 | 4_1:+49338339 | Msa0552680:CDS |
| GCCATCAAGTTCCTGATCTA+AGG | 0.340037 | 4_1:+49341781 | Msa0552680:CDS |
| TCAATACTTGGCTGTGCCTC+TGG | 0.374452 | 4_1:-49338327 | None:intergenic |
| CCAGTAATGGGATCAATACT+TGG | 0.378796 | 4_1:-49338339 | None:intergenic |
| GGATGACTCTTCAACTAGTT+AGG | 0.382251 | 4_1:+49342496 | Msa0552680:CDS |
| TGGTATCTTCTTTCCAGTAA+TGG | 0.384814 | 4_1:-49338352 | None:intergenic |
| TCTGAATGTTGCTGGACCTA+TGG | 0.387257 | 4_1:+49339776 | Msa0552680:CDS |
| ATTCGCTTTGAAACACCTAT+AGG | 0.388518 | 4_1:-49341741 | None:intergenic |
| TCCTTAGATCAGGAACTTGA+TGG | 0.390780 | 4_1:-49341782 | None:intergenic |
| CCTCAAGTAAGGTGAAGTTT+TGG | 0.393511 | 4_1:-49339829 | None:intergenic |
| TGATTTGTAAGGGCTGGTTA+TGG | 0.404504 | 4_1:+49342360 | Msa0552680:intron |
| TGAAGATGAAGAGCTTGATT+AGG | 0.405051 | 4_1:+49343364 | Msa0552680:CDS |
| GTGACTTTGTCTAGTAATCT+TGG | 0.411075 | 4_1:+49342417 | Msa0552680:CDS |
| AATTAAGCAACACAATCCTT+TGG | 0.413513 | 4_1:-49341665 | None:intergenic |
| TCTTCATCTTCATTATCATT+GGG | 0.414299 | 4_1:-49343353 | None:intergenic |
| TCAATTAGATTACAACCTAT+AGG | 0.417293 | 4_1:+49341726 | Msa0552680:CDS |
| CAAAACTTCACCTTACTTGA+GGG | 0.418647 | 4_1:+49339830 | Msa0552680:CDS |
| ATTGAGAAGGGACTGTGTTC+TGG | 0.430812 | 4_1:+49342519 | Msa0552680:CDS |
| AATGATGATGAAGATTTAGA+AGG | 0.433859 | 4_1:+49343293 | Msa0552680:CDS |
| CTGAATGTTGCTGGACCTAT+GGG | 0.440731 | 4_1:+49339777 | Msa0552680:CDS |
| TCTTGAAGATTCCTTAGATC+AGG | 0.447271 | 4_1:-49341792 | None:intergenic |
| CCAAAACTTCACCTTACTTG+AGG | 0.491491 | 4_1:+49339829 | Msa0552680:CDS |
| ATGTAAGAGTAGGTCCTTGT+GGG | 0.499307 | 4_1:-49339863 | None:intergenic |
| GCTGTCAGACTTCAAGAGAT+TGG | 0.502359 | 4_1:+49342468 | Msa0552680:CDS |
| ACTAGTTGAAGAGTCATCCT+TGG | 0.508593 | 4_1:-49342492 | None:intergenic |
| GTAGTTGCAACCCTCAAGTA+AGG | 0.522894 | 4_1:-49339840 | None:intergenic |
| AGAAAGTGAAGCAGATGATG+AGG | 0.552650 | 4_1:+49342386 | Msa0552680:CDS |
| TCAGTGGTGATTTACCTCTA+CGG | 0.556377 | 4_1:+49341496 | Msa0552680:CDS |
| TCAACTAGTTAGGATTGAGA+AGG | 0.559747 | 4_1:+49342506 | Msa0552680:CDS |
| AGGAAATGTGTGACACCCAT+AGG | 0.559784 | 4_1:-49339792 | None:intergenic |
| TTAAACTCTCGTCTTGCCAA+AGG | 0.560394 | 4_1:+49341649 | Msa0552680:CDS |
| GTGCTTTCTGGATTTGTCAG+TGG | 0.563201 | 4_1:+49341480 | Msa0552680:CDS |
| TGTCCAGCAACAGGAAAACC+TGG | 0.576194 | 4_1:+49343239 | Msa0552680:intron |
| ATTGCATCCTCGATGCCCTA+AGG | 0.576592 | 4_1:+49339932 | Msa0552680:CDS |
| AGCAGATGATGAGGCAGCAA+CGG | 0.580635 | 4_1:+49342395 | Msa0552680:CDS |
| ATGTTCGTTGTAAGCCGTAG+AGG | 0.589274 | 4_1:-49341510 | None:intergenic |
| ACAGGAAAACCTGGTGACAA+AGG | 0.598599 | 4_1:+49343248 | Msa0552680:CDS |
| TATGACACTACAAAGATGAA+AGG | 0.598818 | 4_1:+49343402 | Msa0552680:three_prime_UTR |
| TGTATCTTAAATGTAAGAGT+AGG | 0.599693 | 4_1:-49339873 | None:intergenic |
| CAAATTGTAGCAGCAGCCAC+CGG | 0.604846 | 4_1:-49343453 | None:intergenic |
| TAAGATACAAGAGTACGCAT+TGG | 0.608637 | 4_1:+49339887 | Msa0552680:CDS |
| GAAGATGATGATGATCAAGA+TGG | 0.609303 | 4_1:+49343320 | Msa0552680:CDS |
| CAACTAGTTAGGATTGAGAA+GGG | 0.618382 | 4_1:+49342507 | Msa0552680:CDS |
| GAGCTTGATTAGGAACATAG+TGG | 0.622310 | 4_1:+49343374 | Msa0552680:exon |
| ATGTACCAAATTCGTCGAAG+AGG | 0.628027 | 4_1:-49342548 | None:intergenic |
| AATGTAAGAGTAGGTCCTTG+TGG | 0.629934 | 4_1:-49339864 | None:intergenic |
| ACAAAGATGAAAGGTGCCAC+CGG | 0.633702 | 4_1:+49343411 | Msa0552680:three_prime_UTR |
| TTGTTTGAAGATGAATGTAT+CGG | 0.640175 | 4_1:-49338054 | None:intergenic |
| GACTTCAAGAGATTGGTCCA+AGG | 0.646494 | 4_1:+49342475 | Msa0552680:CDS |
| CATTCATCTTCAAACAACCA+TGG | 0.655656 | 4_1:+49338060 | Msa0552680:exon |
| GAAGAATAATAAGCAACCAG+AGG | 0.664474 | 4_1:+49338311 | Msa0552680:CDS |
| AGGGTTGCAACTACCCCACA+AGG | 0.673136 | 4_1:+49339849 | Msa0552680:CDS |
| GAACAACGAAAACTTTCCGG+TGG | 0.685958 | 4_1:-49343427 | None:intergenic |
| AAAAGATCCTTAGGGCATCG+AGG | 0.687198 | 4_1:-49339939 | None:intergenic |
| TGTAAGAGTAGGTCCTTGTG+GGG | 0.701027 | 4_1:-49339862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATATTTTTTTTTTGTT+GGG | - | chr4_1:49338201-49338220 | None:intergenic | 10.0% |
| !!! | TTTTGATATTTTTTTTTTGT+TGG | - | chr4_1:49338202-49338221 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTACAAAT+TGG | + | chr4_1:49340825-49340844 | Msa0552680:intron | 10.0% |
| !! | AAAAACAACAAACATAAAAA+AGG | - | chr4_1:49338491-49338510 | None:intergenic | 15.0% |
| !!! | TTTTTATGTTTGTTGTTTTT+TGG | + | chr4_1:49338491-49338510 | Msa0552680:intron | 15.0% |
| !!! | AATTTTTAAAAAGATCCTTA+GGG | - | chr4_1:49339950-49339969 | None:intergenic | 15.0% |
| !! | TTTCTCTTAAAATTTAATAG+CGG | - | chr4_1:49340320-49340339 | None:intergenic | 15.0% |
| !!! | TCTTTGTTTTAAAAAAAACA+AGG | + | chr4_1:49340352-49340371 | Msa0552680:intron | 15.0% |
| !!! | CTTTGTTTTAAAAAAAACAA+GGG | + | chr4_1:49340353-49340372 | Msa0552680:intron | 15.0% |
| !! | GTAACAAAAAAAAAAATCAA+GGG | - | chr4_1:49340821-49340840 | None:intergenic | 15.0% |
| !! | TGTAACAAAAAAAAAAATCA+AGG | - | chr4_1:49340822-49340841 | None:intergenic | 15.0% |
| !!! | GTAAATATTTTATGACTTAA+AGG | - | chr4_1:49340852-49340871 | None:intergenic | 15.0% |
| !! | ACAAAAAAAAAAGAAGTTAA+AGG | + | chr4_1:49341086-49341105 | Msa0552680:intron | 15.0% |
| !! | ATTAATAATAATGCAAACAA+TGG | - | chr4_1:49342121-49342140 | None:intergenic | 15.0% |
| !! | TTGTTTGCATTATTATTAAT+TGG | + | chr4_1:49342121-49342140 | Msa0552680:intron | 15.0% |
| !!! | TTATTCTTCTTGATAATAAC+AGG | - | chr4_1:49338300-49338319 | None:intergenic | 20.0% |
| !!! | CTTGAAAAAACAAAACTTTT+TGG | - | chr4_1:49338375-49338394 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTGTTTTTTCAAG+AGG | + | chr4_1:49338375-49338394 | Msa0552680:CDS | 20.0% |
| !!! | AAAGTTTTGTTTTTTCAAGA+GGG | + | chr4_1:49338376-49338395 | Msa0552680:CDS | 20.0% |
| !! | CTAAGAAGAATTTATGAAAA+GGG | - | chr4_1:49338665-49338684 | None:intergenic | 20.0% |
| !! | TTAAATAAGTCAATTGAAAC+AGG | + | chr4_1:49338942-49338961 | Msa0552680:intron | 20.0% |
| !! | TATAAACTAATCCAAAACTA+GGG | - | chr4_1:49339241-49339260 | None:intergenic | 20.0% |
| !! | TTATAAACTAATCCAAAACT+AGG | - | chr4_1:49339242-49339261 | None:intergenic | 20.0% |
| !!! | TCTCAACTAAAATAATTTTC+TGG | + | chr4_1:49339274-49339293 | Msa0552680:intron | 20.0% |
| !! | TAAGAAATTAGGAAAAATGA+AGG | - | chr4_1:49339496-49339515 | None:intergenic | 20.0% |
| !! | TTCTCTACATTTAAGAAATT+AGG | - | chr4_1:49339507-49339526 | None:intergenic | 20.0% |
| !! | TTCTTGGCAAATTAATTAAA+TGG | + | chr4_1:49339528-49339547 | Msa0552680:intron | 20.0% |
| !! | TCTTGGCAAATTAATTAAAT+GGG | + | chr4_1:49339529-49339548 | Msa0552680:intron | 20.0% |
| !!! | GAATTTTTAAAAAGATCCTT+AGG | - | chr4_1:49339951-49339970 | None:intergenic | 20.0% |
| !!! | TCTTTTTAAAAATTCTGCAT+TGG | + | chr4_1:49339956-49339975 | Msa0552680:CDS | 20.0% |
| !!! | CTTTTAAGTTTTTTTCATAG+CGG | + | chr4_1:49340125-49340144 | Msa0552680:intron | 20.0% |
| !! | TTGTTAAACAAAAAACTAAG+AGG | - | chr4_1:49340486-49340505 | None:intergenic | 20.0% |
| !!! | GTAGATGTTTTATTACTTAA+AGG | + | chr4_1:49341052-49341071 | Msa0552680:intron | 20.0% |
| !! | GTTATAATCATCTAACTTAA+AGG | + | chr4_1:49341117-49341136 | Msa0552680:intron | 20.0% |
| !! | TAGGAATAAAAGGTAAAAAT+AGG | - | chr4_1:49341161-49341180 | None:intergenic | 20.0% |
| !! | AACTGATAATAAAACAAGAA+TGG | - | chr4_1:49341284-49341303 | None:intergenic | 20.0% |
| !! | TTCTAGTGATAGTATTTAAA+TGG | + | chr4_1:49341325-49341344 | Msa0552680:intron | 20.0% |
| !! | ACTATTTCATAATTCAAACA+CGG | - | chr4_1:49341407-49341426 | None:intergenic | 20.0% |
| !! | TTGCATTATTATTAATTGGT+AGG | + | chr4_1:49342125-49342144 | Msa0552680:intron | 20.0% |
| !! | AAATGAAGTAAAATTACTTG+AGG | - | chr4_1:49342589-49342608 | None:intergenic | 20.0% |
| ! | TTGTTTGAAGATGAATGTAT+CGG | - | chr4_1:49338057-49338076 | None:intergenic | 25.0% |
| !!! | AAAGTTCTAAAGTAACAAAG+TGG | - | chr4_1:49338133-49338152 | None:intergenic | 25.0% |
| ! | GCTAAGAAGAATTTATGAAA+AGG | - | chr4_1:49338666-49338685 | None:intergenic | 25.0% |
| ! | CTGTATTAAATCTAACTCAT+AGG | + | chr4_1:49339044-49339063 | Msa0552680:intron | 25.0% |
| ! | TATTAAATCTAACTCATAGG+TGG | + | chr4_1:49339047-49339066 | Msa0552680:intron | 25.0% |
| !! | TAACGAACTTTTGTAAAACA+AGG | + | chr4_1:49339110-49339129 | Msa0552680:intron | 25.0% |
| !! | TTTTGTAAAACAAGGTTGTT+CGG | + | chr4_1:49339118-49339137 | Msa0552680:intron | 25.0% |
| !! | AATTTCAGGGATTTTTGTTA+AGG | + | chr4_1:49339169-49339188 | Msa0552680:intron | 25.0% |
| !!! | TTCTGGTTTTTACTTTCAAA+AGG | + | chr4_1:49339291-49339310 | Msa0552680:intron | 25.0% |
| !!! | TCTGGTTTTTACTTTCAAAA+GGG | + | chr4_1:49339292-49339311 | Msa0552680:intron | 25.0% |
| ! | CTTAAATGTAGAGAATTTCT+TGG | + | chr4_1:49339512-49339531 | Msa0552680:intron | 25.0% |
| !! | CAGAGTTTAAGATTTGAATA+CGG | + | chr4_1:49339571-49339590 | Msa0552680:intron | 25.0% |
| ! | TGAAATTTACTGAGAGAAAT+TGG | + | chr4_1:49339602-49339621 | Msa0552680:intron | 25.0% |
| ! | TTGTCACATGTAATTGAAAT+CGG | - | chr4_1:49339674-49339693 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTTGACAATATG+AGG | - | chr4_1:49339815-49339834 | None:intergenic | 25.0% |
| ! | TGTATCTTAAATGTAAGAGT+AGG | - | chr4_1:49339876-49339895 | None:intergenic | 25.0% |
| ! | TTCTATTGAAATGCGAAAAA+AGG | + | chr4_1:49340052-49340071 | Msa0552680:intron | 25.0% |
| !! | AAAGGAGTATGTATTATATC+CGG | + | chr4_1:49340070-49340089 | Msa0552680:intron | 25.0% |
| ! | GTTATAAACATCGAACTTAA+AGG | - | chr4_1:49340097-49340116 | None:intergenic | 25.0% |
| !! | CCTTTTATTCTTATGCAAAA+CGG | + | chr4_1:49340420-49340439 | Msa0552680:intron | 25.0% |
| ! | AAAACTAAGAGGATAACAAA+AGG | - | chr4_1:49340475-49340494 | None:intergenic | 25.0% |
| ! | AACTAGAACAAAAAAGTAAC+AGG | - | chr4_1:49340525-49340544 | None:intergenic | 25.0% |
| !! | GTTTTATATGAACAAAACTG+AGG | - | chr4_1:49340609-49340628 | None:intergenic | 25.0% |
| ! | CCACAAAAACAACAAAAATA+TGG | - | chr4_1:49340653-49340672 | None:intergenic | 25.0% |
| !!! | CCATATTTTTGTTGTTTTTG+TGG | + | chr4_1:49340650-49340669 | Msa0552680:intron | 25.0% |
| ! | AAAACCATAGTAGTTAATAG+CGG | - | chr4_1:49340783-49340802 | None:intergenic | 25.0% |
| !!! | AAGCACTTTTTTAATGAAGT+TGG | - | chr4_1:49340895-49340914 | None:intergenic | 25.0% |
| !!! | CTTCATTAAAAAAGTGCTTA+TGG | + | chr4_1:49340896-49340915 | Msa0552680:intron | 25.0% |
| ! | CATTAGTTAAAACTGCTAAA+TGG | + | chr4_1:49341201-49341220 | Msa0552680:intron | 25.0% |
| ! | CAATTGTTGGAAAAATATTC+TGG | - | chr4_1:49341539-49341558 | None:intergenic | 25.0% |
| ! | TCAATTAGATTACAACCTAT+AGG | + | chr4_1:49341726-49341745 | Msa0552680:CDS | 25.0% |
| !!! | AAATGAGAAAGTATCTTACT+TGG | - | chr4_1:49341835-49341854 | None:intergenic | 25.0% |
| ! | ACTTTATGAAGGATTAACAT+GGG | - | chr4_1:49341943-49341962 | None:intergenic | 25.0% |
| ! | TACTTTATGAAGGATTAACA+TGG | - | chr4_1:49341944-49341963 | None:intergenic | 25.0% |
| ! | TTACAACCAAAAAAAAAGAG+AGG | - | chr4_1:49342046-49342065 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTTGTAACTCA+TGG | + | chr4_1:49342050-49342069 | Msa0552680:intron | 25.0% |
| !! | TAAAAAAGAAGCATAAGCAA+TGG | - | chr4_1:49342317-49342336 | None:intergenic | 25.0% |
| !!! | TTTTTCACTTGTGATTTGTA+AGG | + | chr4_1:49342349-49342368 | Msa0552680:intron | 25.0% |
| !!! | TTTTCACTTGTGATTTGTAA+GGG | + | chr4_1:49342350-49342369 | Msa0552680:intron | 25.0% |
| !! | ATTACTTGAGGAAAAAGTAT+AGG | - | chr4_1:49342577-49342596 | None:intergenic | 25.0% |
| ! | AGAAAAGAGTTAATAGTCAT+TGG | - | chr4_1:49342768-49342787 | None:intergenic | 25.0% |
| ! | AAAGATGTCAAGAAACTTAA+TGG | - | chr4_1:49342988-49343007 | None:intergenic | 25.0% |
| ! | AAATCACAATACAATGACTT+GGG | - | chr4_1:49343061-49343080 | None:intergenic | 25.0% |
| ! | AAAATCACAATACAATGACT+TGG | - | chr4_1:49343062-49343081 | None:intergenic | 25.0% |
| ! | AAATCACAATACAATGACTT+GGG | - | chr4_1:49343061-49343080 | None:intergenic | 25.0% |
| ! | AAAATCACAATACAATGACT+TGG | - | chr4_1:49343062-49343081 | None:intergenic | 25.0% |
| ! | CAGAAAACAAGAAGAAAAAT+GGG | - | chr4_1:49343132-49343151 | None:intergenic | 25.0% |
| ! | TCAGAAAACAAGAAGAAAAA+TGG | - | chr4_1:49343133-49343152 | None:intergenic | 25.0% |
| !! | AATGATGATGAAGATTTAGA+AGG | + | chr4_1:49343293-49343312 | Msa0552680:CDS | 25.0% |
| ! | TCTTCATCTTCATTATCATT+GGG | - | chr4_1:49343356-49343375 | None:intergenic | 25.0% |
| !! | TTCTAAAGTAACAAAGTGGT+TGG | - | chr4_1:49338129-49338148 | None:intergenic | 30.0% |
| AGAACTTTCGATTATTGAAC+TGG | + | chr4_1:49338145-49338164 | Msa0552680:intron | 30.0% | |
| GAACTTTCGATTATTGAACT+GGG | + | chr4_1:49338146-49338165 | Msa0552680:intron | 30.0% | |
| !! | TTTTGTTGTGAATGAAACAG+AGG | + | chr4_1:49338250-49338269 | Msa0552680:intron | 30.0% |
| AAACAGAGGAAGAATCAAAA+AGG | + | chr4_1:49338264-49338283 | Msa0552680:intron | 30.0% | |
| AACAGAGGAAGAATCAAAAA+GGG | + | chr4_1:49338265-49338284 | Msa0552680:intron | 30.0% | |
| ! | ATGTATGCTTTAAGTTATCC+TGG | + | chr4_1:49338592-49338611 | Msa0552680:intron | 30.0% |
| ATAAGCTGAAAACAACTTAC+AGG | + | chr4_1:49338628-49338647 | Msa0552680:intron | 30.0% | |
| AAATGAGATATGGCTATGTT+TGG | + | chr4_1:49338720-49338739 | Msa0552680:intron | 30.0% | |
| GACAATGAAATGTTATGTTG+TGG | + | chr4_1:49338997-49339016 | Msa0552680:intron | 30.0% | |
| TGACTGCTGTATTAATTTCA+GGG | + | chr4_1:49339156-49339175 | Msa0552680:intron | 30.0% | |
| AGGGACAATCAATCTAAATA+AGG | - | chr4_1:49339205-49339224 | None:intergenic | 30.0% | |
| CTTATTTCAACATACATGAG+AGG | + | chr4_1:49339383-49339402 | Msa0552680:intron | 30.0% | |
| TATTGAGAAGCTTATCATAC+TGG | + | chr4_1:49339470-49339489 | Msa0552680:intron | 30.0% | |
| CGTATTCAAATCTTAAACTC+TGG | - | chr4_1:49339573-49339592 | None:intergenic | 30.0% | |
| GATTTCAATTACATGTGACA+AGG | + | chr4_1:49339673-49339692 | Msa0552680:intron | 30.0% | |
| ! | CTATTTTGCAGGAAAAGAAA+CGG | + | chr4_1:49339736-49339755 | Msa0552680:intron | 30.0% |
| ! | CCGTTTTGCATAAGAATAAA+AGG | - | chr4_1:49340423-49340442 | None:intergenic | 30.0% |
| AAAAAAAATCAAGGGTCAAC+TGG | - | chr4_1:49340813-49340832 | None:intergenic | 30.0% | |
| ATGAAGTTGGACGAAAAAAT+GGG | - | chr4_1:49340882-49340901 | None:intergenic | 30.0% | |
| AATGAAGTTGGACGAAAAAA+TGG | - | chr4_1:49340883-49340902 | None:intergenic | 30.0% | |
| TTATGGACCATTTAACATTG+AGG | + | chr4_1:49340913-49340932 | Msa0552680:intron | 30.0% | |
| GTAATCATGTTTGATGTCAT+AGG | - | chr4_1:49340956-49340975 | None:intergenic | 30.0% | |
| CATTCTGTGATAGGAATAAA+AGG | - | chr4_1:49341171-49341190 | None:intergenic | 30.0% | |
| TTATTCCTATCACAGAATGA+AGG | + | chr4_1:49341172-49341191 | Msa0552680:intron | 30.0% | |
| TATTCCTATCACAGAATGAA+GGG | + | chr4_1:49341173-49341192 | Msa0552680:intron | 30.0% | |
| ATTTCATAATTCAAACACGG+TGG | - | chr4_1:49341404-49341423 | None:intergenic | 30.0% | |
| AGCATGTTAGATAACTACTA+AGG | - | chr4_1:49341433-49341452 | None:intergenic | 30.0% | |
| CAATCTGGTAACATAAAATC+AGG | - | chr4_1:49341461-49341480 | None:intergenic | 30.0% | |
| !! | ACAGTTTTAACGTCAATTGT+TGG | - | chr4_1:49341552-49341571 | None:intergenic | 30.0% |
| GTTTAACCTGAAATATACCA+CGG | - | chr4_1:49341635-49341654 | None:intergenic | 30.0% | |
| AATTAAGCAACACAATCCTT+TGG | - | chr4_1:49341668-49341687 | None:intergenic | 30.0% | |
| !!! | AGACTAAGCTCATTGATTTT+CGG | + | chr4_1:49341697-49341716 | Msa0552680:CDS | 30.0% |
| !!! | CATCATCCTCTCTTTTTTTT+TGG | + | chr4_1:49342037-49342056 | Msa0552680:intron | 30.0% |
| ! | TGTAACTCATGGTTTTTCTA+AGG | + | chr4_1:49342061-49342080 | Msa0552680:intron | 30.0% |
| ! | GTAACTCATGGTTTTTCTAA+GGG | + | chr4_1:49342062-49342081 | Msa0552680:intron | 30.0% |
| ! | TGTTTGGATTAATGGGTAAT+GGG | + | chr4_1:49342087-49342106 | Msa0552680:intron | 30.0% |
| TATATCTTCCTTTCTCAATC+AGG | - | chr4_1:49342170-49342189 | None:intergenic | 30.0% | |
| GTTTACTTCTGAATGACTTT+GGG | - | chr4_1:49342267-49342286 | None:intergenic | 30.0% | |
| TGTTTACTTCTGAATGACTT+TGG | - | chr4_1:49342268-49342287 | None:intergenic | 30.0% | |
| TTTGCACAAACGTTCAAAAA+TGG | - | chr4_1:49342691-49342710 | None:intergenic | 30.0% | |
| CAAAATCATACACATGGATT+GGG | - | chr4_1:49342855-49342874 | None:intergenic | 30.0% | |
| ACAAAATCATACACATGGAT+TGG | - | chr4_1:49342856-49342875 | None:intergenic | 30.0% | |
| ! | AATCCATGTGTATGATTTTG+TGG | + | chr4_1:49342855-49342874 | Msa0552680:intron | 30.0% |
| ! | AAACTTAATGGAGTTTTACG+AGG | - | chr4_1:49342976-49342995 | None:intergenic | 30.0% |
| ! | ATGACTTGGGAACTAAAAAT+GGG | - | chr4_1:49343090-49343109 | None:intergenic | 30.0% |
| ! | AATGACTTGGGAACTAAAAA+TGG | - | chr4_1:49343091-49343110 | None:intergenic | 30.0% |
| CTCTTCATCTTCATTATCAT+TGG | - | chr4_1:49343357-49343376 | None:intergenic | 30.0% | |
| TATGACACTACAAAGATGAA+AGG | + | chr4_1:49343402-49343421 | Msa0552680:three_prime_UTR | 30.0% | |
| AATGAACAACGAAAACTTTC+CGG | - | chr4_1:49343433-49343452 | None:intergenic | 30.0% | |
| ! | AAAGTTTTCGTTGTTCATTC+CGG | + | chr4_1:49343434-49343453 | Msa0552680:three_prime_UTR | 30.0% |
| CATTCATCTTCAAACAACCA+TGG | + | chr4_1:49338060-49338079 | Msa0552680:exon | 35.0% | |
| AAAGAAGCTTAAGCTTACCA+TGG | - | chr4_1:49338080-49338099 | None:intergenic | 35.0% | |
| TCGATTATTGAACTGGGTAT+TGG | + | chr4_1:49338152-49338171 | Msa0552680:intron | 35.0% | |
| GAAGAATAATAAGCAACCAG+AGG | + | chr4_1:49338311-49338330 | Msa0552680:CDS | 35.0% | |
| GGTATCTTCTTTCCAGTAAT+GGG | - | chr4_1:49338354-49338373 | None:intergenic | 35.0% | |
| TGGTATCTTCTTTCCAGTAA+TGG | - | chr4_1:49338355-49338374 | None:intergenic | 35.0% | |
| !! | CTTATTTTCACAAGCTATCC+AGG | - | chr4_1:49338613-49338632 | None:intergenic | 35.0% |
| TCACAAGTGCTTATGTAAGT+AGG | + | chr4_1:49338690-49338709 | Msa0552680:intron | 35.0% | |
| AGGTAAGCTCAAATGAGATA+TGG | + | chr4_1:49338710-49338729 | Msa0552680:intron | 35.0% | |
| !! | CTTATTTTCGTAAGCTGTCT+AGG | - | chr4_1:49338853-49338872 | None:intergenic | 35.0% |
| !! | TCTAACTCATAGGTGGATTA+AGG | + | chr4_1:49339054-49339073 | Msa0552680:intron | 35.0% |
| GTGACTGCTGTATTAATTTC+AGG | + | chr4_1:49339155-49339174 | Msa0552680:intron | 35.0% | |
| CCAAAACTAGGGCTATATTA+AGG | - | chr4_1:49339230-49339249 | None:intergenic | 35.0% | |
| ! | CCTTAATATAGCCCTAGTTT+TGG | + | chr4_1:49339227-49339246 | Msa0552680:intron | 35.0% |
| AAGCTTCTCAATAAGCACTT+AGG | - | chr4_1:49339463-49339482 | None:intergenic | 35.0% | |
| !!! | TGAGAGAAATTGGCTTTTGT+AGG | + | chr4_1:49339612-49339631 | Msa0552680:intron | 35.0% |
| !!! | GAGAGAAATTGGCTTTTGTA+GGG | + | chr4_1:49339613-49339632 | Msa0552680:intron | 35.0% |
| !! | TTGGCTTTTGTAGGGATTTT+TGG | + | chr4_1:49339621-49339640 | Msa0552680:intron | 35.0% |
| TTCAATTACATGTGACAAGG+TGG | + | chr4_1:49339676-49339695 | Msa0552680:intron | 35.0% | |
| ! | CGTTTCTTTTCCTGCAAAAT+AGG | - | chr4_1:49339738-49339757 | None:intergenic | 35.0% |
| CAAAACTTCACCTTACTTGA+GGG | + | chr4_1:49339830-49339849 | Msa0552680:CDS | 35.0% | |
| ! | TAAGATACAAGAGTACGCAT+TGG | + | chr4_1:49339887-49339906 | Msa0552680:CDS | 35.0% |
| AAACATCGAACTTAAAGGAC+CGG | - | chr4_1:49340092-49340111 | None:intergenic | 35.0% | |
| !! | TGACTATTGATTCCTGCTAT+TGG | - | chr4_1:49340168-49340187 | None:intergenic | 35.0% |
| CAGGAATCAATAGTCAATAG+CGG | + | chr4_1:49340172-49340191 | Msa0552680:intron | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | chr4_1:49340745-49340764 | Msa0552680:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr4_1:49340776-49340795 | None:intergenic | 35.0% |
| CTATCCGCTATTAACTACTA+TGG | + | chr4_1:49340776-49340795 | Msa0552680:intron | 35.0% | |
| ! | TTTGATGTCATAGGCACTTT+TGG | - | chr4_1:49340947-49340966 | None:intergenic | 35.0% |
| !! | ATTCGCTTTGAAACACCTAT+AGG | - | chr4_1:49341744-49341763 | None:intergenic | 35.0% |
| TCTTGAAGATTCCTTAGATC+AGG | - | chr4_1:49341795-49341814 | None:intergenic | 35.0% | |
| TGCAATGCTAATGACAGAAA+AGG | - | chr4_1:49341920-49341939 | None:intergenic | 35.0% | |
| CAGACTTGCATACTTTATGA+AGG | - | chr4_1:49341954-49341973 | None:intergenic | 35.0% | |
| ! | TAAGGGTGTGTTTGGATTAA+TGG | + | chr4_1:49342079-49342098 | Msa0552680:intron | 35.0% |
| ! | AAGGGTGTGTTTGGATTAAT+GGG | + | chr4_1:49342080-49342099 | Msa0552680:intron | 35.0% |
| ! | GTGTTTGGATTAATGGGTAA+TGG | + | chr4_1:49342086-49342105 | Msa0552680:intron | 35.0% |
| AATATCAGCCTGATTGAGAA+AGG | + | chr4_1:49342159-49342178 | Msa0552680:intron | 35.0% | |
| GTGACTTTGTCTAGTAATCT+TGG | + | chr4_1:49342417-49342436 | Msa0552680:CDS | 35.0% | |
| TCAACTAGTTAGGATTGAGA+AGG | + | chr4_1:49342506-49342525 | Msa0552680:CDS | 35.0% | |
| CAACTAGTTAGGATTGAGAA+GGG | + | chr4_1:49342507-49342526 | Msa0552680:CDS | 35.0% | |
| ! | CTATCATCTTTTACTGTCTC+AGG | + | chr4_1:49342639-49342658 | Msa0552680:intron | 35.0% |
| ! | CTTCACTCTTGTTATCTTTC+TGG | + | chr4_1:49342916-49342935 | Msa0552680:intron | 35.0% |
| CAGATACAAAAGAGATGAGA+GGG | - | chr4_1:49343187-49343206 | None:intergenic | 35.0% | |
| TCAGATACAAAAGAGATGAG+AGG | - | chr4_1:49343188-49343207 | None:intergenic | 35.0% | |
| ! | GAAGATGATGATGATCAAGA+TGG | + | chr4_1:49343320-49343339 | Msa0552680:CDS | 35.0% |
| TGAAGATGAAGAGCTTGATT+AGG | + | chr4_1:49343364-49343383 | Msa0552680:CDS | 35.0% | |
| ! | CCAGTAATGGGATCAATACT+TGG | - | chr4_1:49338342-49338361 | None:intergenic | 40.0% |
| !! | CCAAGTATTGATCCCATTAC+TGG | + | chr4_1:49338339-49338358 | Msa0552680:CDS | 40.0% |
| TGAAGCTGTTTAAGAGGAAC+AGG | - | chr4_1:49338408-49338427 | None:intergenic | 40.0% | |
| TCCTCTTAAACAGCTTCAGA+TGG | + | chr4_1:49338410-49338429 | Msa0552680:intron | 40.0% | |
| ! | TCCATCTGAAGCTGTTTAAG+AGG | - | chr4_1:49338414-49338433 | None:intergenic | 40.0% |
| AACAGCTTCAGATGGATCTT+AGG | + | chr4_1:49338418-49338437 | Msa0552680:intron | 40.0% | |
| TTGAGACTGAGAGCAGTATA+AGG | - | chr4_1:49338456-49338475 | None:intergenic | 40.0% | |
| TTATACTGCTCTCAGTCTCA+AGG | + | chr4_1:49338455-49338474 | Msa0552680:intron | 40.0% | |
| AAGTCAATTGAAACAGGTCC+TGG | + | chr4_1:49338948-49338967 | Msa0552680:intron | 40.0% | |
| AGTCAATTGAAACAGGTCCT+GGG | + | chr4_1:49338949-49338968 | Msa0552680:intron | 40.0% | |
| AATGCAAATGAGATACACCC+AGG | - | chr4_1:49338969-49338988 | None:intergenic | 40.0% | |
| !! | AACTCATAGGTGGATTAAGG+TGG | + | chr4_1:49339057-49339076 | Msa0552680:intron | 40.0% |
| TTAAGGTGGTTTCGTGAGTT+TGG | + | chr4_1:49339071-49339090 | Msa0552680:intron | 40.0% | |
| ! | TTCGTGAGTTTGGAGACTTT+TGG | + | chr4_1:49339081-49339100 | Msa0552680:intron | 40.0% |
| CTAGGGCTATATTAAGGCAA+GGG | - | chr4_1:49339224-49339243 | None:intergenic | 40.0% | |
| ACTAGGGCTATATTAAGGCA+AGG | - | chr4_1:49339225-49339244 | None:intergenic | 40.0% | |
| CAACATACATGAGAGGCTAT+TGG | + | chr4_1:49339390-49339409 | Msa0552680:intron | 40.0% | |
| AGAGACTTTCTGAATGTTGC+TGG | + | chr4_1:49339768-49339787 | Msa0552680:CDS | 40.0% | |
| ! | CCTCAAGTAAGGTGAAGTTT+TGG | - | chr4_1:49339832-49339851 | None:intergenic | 40.0% |
| CCAAAACTTCACCTTACTTG+AGG | + | chr4_1:49339829-49339848 | Msa0552680:CDS | 40.0% | |
| ATGTAAGAGTAGGTCCTTGT+GGG | - | chr4_1:49339866-49339885 | None:intergenic | 40.0% | |
| AATGTAAGAGTAGGTCCTTG+TGG | - | chr4_1:49339867-49339886 | None:intergenic | 40.0% | |
| ! | GGAGAGAAGCTGAACTTTTT+AGG | - | chr4_1:49340402-49340421 | None:intergenic | 40.0% |
| ACTGCAAAACACAACGCAAA+AGG | + | chr4_1:49340449-49340468 | Msa0552680:intron | 40.0% | |
| AGAGAGAGCAGAATGAAGTT+TGG | - | chr4_1:49340565-49340584 | None:intergenic | 40.0% | |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | chr4_1:49340744-49340763 | Msa0552680:intron | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | chr4_1:49340746-49340765 | Msa0552680:intron | 40.0% |
| TGGACCATTTAACATTGAGG+TGG | + | chr4_1:49340916-49340935 | Msa0552680:intron | 40.0% | |
| CCTACCACCTCAATGTTAAA+TGG | - | chr4_1:49340923-49340942 | None:intergenic | 40.0% | |
| CCATTTAACATTGAGGTGGT+AGG | + | chr4_1:49340920-49340939 | Msa0552680:intron | 40.0% | |
| AATAGGCCAAATACCATCTG+CGG | - | chr4_1:49341144-49341163 | None:intergenic | 40.0% | |
| CTATCCCTTCATTCTGTGAT+AGG | - | chr4_1:49341180-49341199 | None:intergenic | 40.0% | |
| TGTTACCAGATTGTGCTTTC+TGG | + | chr4_1:49341468-49341487 | Msa0552680:intron | 40.0% | |
| ! | CAAATCCAGAAAGCACAATC+TGG | - | chr4_1:49341476-49341495 | None:intergenic | 40.0% |
| TCAGTGGTGATTTACCTCTA+CGG | + | chr4_1:49341496-49341515 | Msa0552680:CDS | 40.0% | |
| CTGAAATATACCACGGCATT+AGG | - | chr4_1:49341628-49341647 | None:intergenic | 40.0% | |
| CTAATGCCGTGGTATATTTC+AGG | + | chr4_1:49341626-49341645 | Msa0552680:intron | 40.0% | |
| TTAAACTCTCGTCTTGCCAA+AGG | + | chr4_1:49341649-49341668 | Msa0552680:CDS | 40.0% | |
| TCCTTAGATCAGGAACTTGA+TGG | - | chr4_1:49341785-49341804 | None:intergenic | 40.0% | |
| !! | GGTTTTTCTAAGGGTGTGTT+TGG | + | chr4_1:49342071-49342090 | Msa0552680:intron | 40.0% |
| !! | TGATTTGTAAGGGCTGGTTA+TGG | + | chr4_1:49342360-49342379 | Msa0552680:intron | 40.0% |
| AGAAAGTGAAGCAGATGATG+AGG | + | chr4_1:49342386-49342405 | Msa0552680:CDS | 40.0% | |
| ACTAGTTGAAGAGTCATCCT+TGG | - | chr4_1:49342495-49342514 | None:intergenic | 40.0% | |
| GGATGACTCTTCAACTAGTT+AGG | + | chr4_1:49342496-49342515 | Msa0552680:CDS | 40.0% | |
| ATGTACCAAATTCGTCGAAG+AGG | - | chr4_1:49342551-49342570 | None:intergenic | 40.0% | |
| ACGCCACAAAATCATACACA+TGG | - | chr4_1:49342861-49342880 | None:intergenic | 40.0% | |
| ! | TCAGTTTTTCCTTTGTCACC+AGG | - | chr4_1:49343260-49343279 | None:intergenic | 40.0% |
| GAGCTTGATTAGGAACATAG+TGG | + | chr4_1:49343374-49343393 | Msa0552680:exon | 40.0% | |
| ! | TCTCGTGTCACCTATTTTGC+AGG | + | chr4_1:49339725-49339744 | Msa0552680:intron | 45.0% |
| TCTGAATGTTGCTGGACCTA+TGG | + | chr4_1:49339776-49339795 | Msa0552680:CDS | 45.0% | |
| CTGAATGTTGCTGGACCTAT+GGG | + | chr4_1:49339777-49339796 | Msa0552680:CDS | 45.0% | |
| AGGAAATGTGTGACACCCAT+AGG | - | chr4_1:49339795-49339814 | None:intergenic | 45.0% | |
| GTAGTTGCAACCCTCAAGTA+AGG | - | chr4_1:49339843-49339862 | None:intergenic | 45.0% | |
| TGTAAGAGTAGGTCCTTGTG+GGG | - | chr4_1:49339865-49339884 | None:intergenic | 45.0% | |
| !! | AAAAGATCCTTAGGGCATCG+AGG | - | chr4_1:49339942-49339961 | None:intergenic | 45.0% |
| ! | TTTTGTGGACAACACAGCCA+TGG | + | chr4_1:49340665-49340684 | Msa0552680:intron | 45.0% |
| GACCCCAAAAATGCTATAGC+GGG | - | chr4_1:49340751-49340770 | None:intergenic | 45.0% | |
| CGACCCCAAAAATGCTATAG+CGG | - | chr4_1:49340752-49340771 | None:intergenic | 45.0% | |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | + | chr4_1:49340750-49340769 | Msa0552680:intron | 45.0% |
| CTAACTTAAAGGACCGCAGA+TGG | + | chr4_1:49341128-49341147 | Msa0552680:intron | 45.0% | |
| AAAGGACCGCAGATGGTATT+TGG | + | chr4_1:49341135-49341154 | Msa0552680:intron | 45.0% | |
| GTGCTTTCTGGATTTGTCAG+TGG | + | chr4_1:49341480-49341499 | Msa0552680:CDS | 45.0% | |
| ATGTTCGTTGTAAGCCGTAG+AGG | - | chr4_1:49341513-49341532 | None:intergenic | 45.0% | |
| TATACCACGGCATTAGGAGA+TGG | - | chr4_1:49341622-49341641 | None:intergenic | 45.0% | |
| GCCATCAAGTTCCTGATCTA+AGG | + | chr4_1:49341781-49341800 | Msa0552680:CDS | 45.0% | |
| ! | CACTTGTGATTTGTAAGGGC+TGG | + | chr4_1:49342354-49342373 | Msa0552680:intron | 45.0% |
| GCTGTCAGACTTCAAGAGAT+TGG | + | chr4_1:49342468-49342487 | Msa0552680:CDS | 45.0% | |
| ! | GACTTCAAGAGATTGGTCCA+AGG | + | chr4_1:49342475-49342494 | Msa0552680:CDS | 45.0% |
| ATTGAGAAGGGACTGTGTTC+TGG | + | chr4_1:49342519-49342538 | Msa0552680:CDS | 45.0% | |
| GAAGTCCTCTTCGACGAATT+TGG | + | chr4_1:49342543-49342562 | Msa0552680:CDS | 45.0% | |
| CGAGGATATGCGATCAGAAA+GGG | - | chr4_1:49342958-49342977 | None:intergenic | 45.0% | |
| ACGAGGATATGCGATCAGAA+AGG | - | chr4_1:49342959-49342978 | None:intergenic | 45.0% | |
| ACAAAAGAGATGAGAGGGAG+AGG | - | chr4_1:49343182-49343201 | None:intergenic | 45.0% | |
| ACAGGAAAACCTGGTGACAA+AGG | + | chr4_1:49343248-49343267 | Msa0552680:CDS | 45.0% | |
| !! | ACAAAGATGAAAGGTGCCAC+CGG | + | chr4_1:49343411-49343430 | Msa0552680:three_prime_UTR | 45.0% |
| GAACAACGAAAACTTTCCGG+TGG | - | chr4_1:49343430-49343449 | None:intergenic | 45.0% | |
| ! | GTTTTCGTTGTTCATTCCGG+TGG | + | chr4_1:49343437-49343456 | Msa0552680:three_prime_UTR | 45.0% |
| TCAATACTTGGCTGTGCCTC+TGG | - | chr4_1:49338330-49338349 | None:intergenic | 50.0% | |
| ATTGCATCCTCGATGCCCTA+AGG | + | chr4_1:49339932-49339951 | Msa0552680:CDS | 50.0% | |
| AATAGTCAATAGCGGCCACG+CGG | + | chr4_1:49340180-49340199 | Msa0552680:intron | 50.0% | |
| TATCTCACACCGCAACGCTA+TGG | - | chr4_1:49340238-49340257 | None:intergenic | 50.0% | |
| GTGAGATAGCGCTGCTATAG+CGG | + | chr4_1:49340250-49340269 | Msa0552680:intron | 50.0% | |
| ! | ACGGCATTAGGAGATGGACT+TGG | - | chr4_1:49341616-49341635 | None:intergenic | 50.0% |
| AAGTCCATCTCCTAATGCCG+TGG | + | chr4_1:49341615-49341634 | Msa0552680:intron | 50.0% | |
| AGCAGATGATGAGGCAGCAA+CGG | + | chr4_1:49342395-49342414 | Msa0552680:CDS | 50.0% | |
| !! | ACATGGATTGGGTGCTGAAG+TGG | - | chr4_1:49342844-49342863 | None:intergenic | 50.0% |
| ! | GGTTTTCCTGTTGCTGGACA+AGG | - | chr4_1:49343239-49343258 | None:intergenic | 50.0% |
| TGTCCAGCAACAGGAAAACC+TGG | + | chr4_1:49343239-49343258 | Msa0552680:intron | 50.0% | |
| ! | TCACCAGGTTTTCCTGTTGC+TGG | - | chr4_1:49343245-49343264 | None:intergenic | 50.0% |
| CAAATTGTAGCAGCAGCCAC+CGG | - | chr4_1:49343456-49343475 | None:intergenic | 50.0% | |
| AGGGTTGCAACTACCCCACA+AGG | + | chr4_1:49339849-49339868 | Msa0552680:CDS | 55.0% | |
| CGCAACAAGCCATAGCGTTG+CGG | + | chr4_1:49340226-49340245 | Msa0552680:intron | 55.0% | |
| ! | AACGCTGCGTAGCGGTTTTG+CGG | + | chr4_1:49340276-49340295 | Msa0552680:intron | 55.0% |
| AACACAGCCATGGCAGCATC+AGG | + | chr4_1:49340675-49340694 | Msa0552680:intron | 55.0% | |
| ACCAGAACCTGATGCTGCCA+TGG | - | chr4_1:49340685-49340704 | None:intergenic | 55.0% | |
| GTTCTGCCTTGTCCAGCAAC+AGG | + | chr4_1:49343230-49343249 | Msa0552680:intron | 55.0% | |
| GATTCCTGCTATTGGCCGCG+CGG | - | chr4_1:49340160-49340179 | None:intergenic | 60.0% | |
| !! | TGGCTTGTTGCGTAGCGCTC+CGG | - | chr4_1:49340218-49340237 | None:intergenic | 60.0% |
| ! | ACGCTGCGTAGCGGTTTTGC+GGG | + | chr4_1:49340277-49340296 | Msa0552680:intron | 60.0% |
| GCCATGGCAGCATCAGGTTC+TGG | + | chr4_1:49340681-49340700 | Msa0552680:intron | 60.0% | |
| TATTGGCCGCGCGGCGCTAT+TGG | - | chr4_1:49340151-49340170 | None:intergenic | 65.0% | |
| TCAATAGCGGCCACGCGGTG+CGG | + | chr4_1:49340185-49340204 | Msa0552680:intron | 65.0% | |
| ! | CTGCGTAGCGGTTTTGCGGG+CGG | + | chr4_1:49340280-49340299 | Msa0552680:intron | 65.0% |
| ! | TGCGTAGCGGTTTTGCGGGC+GGG | + | chr4_1:49340281-49340300 | Msa0552680:intron | 65.0% |
| TAGCGGCCAATAGCGCCGCG+CGG | + | chr4_1:49340142-49340161 | Msa0552680:intron | 70.0% | |
| AGCGGCGCAACGCTGCGTAG+CGG | + | chr4_1:49340268-49340287 | Msa0552680:intron | 70.0% | |
| !!! | GCGGTTTTGCGGGCGGGTTG+CGG | + | chr4_1:49340287-49340306 | Msa0552680:intron | 70.0% |
| AGCGCCGCGCGGCCAATAGC+AGG | + | chr4_1:49340153-49340172 | Msa0552680:intron | 75.0% | |
| ! | AGCGGCCACGCGGTGCGGTG+CGG | + | chr4_1:49340190-49340209 | Msa0552680:intron | 80.0% |
| ! | CACGCGGTGCGGTGCGGTGC+CGG | + | chr4_1:49340196-49340215 | Msa0552680:intron | 80.0% |
| ! | CGGCACCGCACCGCACCGCG+TGG | - | chr4_1:49340198-49340217 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 49338039 | 49343542 | 49338039 | ID=Msa0552680;Name=Msa0552680 |
| chr4_1 | mRNA | 49338039 | 49343542 | 49338039 | ID=Msa0552680-mRNA-1;Parent=Msa0552680;Name=Msa0552680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=40|0.83|0.85|1|1|1|7|157|328 |
| chr4_1 | exon | 49338039 | 49338081 | 49338039 | ID=Msa0552680-mRNA-1:exon:13782;Parent=Msa0552680-mRNA-1 |
| chr4_1 | exon | 49338270 | 49338407 | 49338270 | ID=Msa0552680-mRNA-1:exon:13783;Parent=Msa0552680-mRNA-1 |
| chr4_1 | exon | 49339747 | 49339977 | 49339747 | ID=Msa0552680-mRNA-1:exon:13784;Parent=Msa0552680-mRNA-1 |
| chr4_1 | exon | 49341477 | 49341569 | 49341477 | ID=Msa0552680-mRNA-1:exon:13785;Parent=Msa0552680-mRNA-1 |
| chr4_1 | exon | 49341648 | 49341835 | 49341648 | ID=Msa0552680-mRNA-1:exon:13786;Parent=Msa0552680-mRNA-1 |
| chr4_1 | exon | 49342371 | 49342564 | 49342371 | ID=Msa0552680-mRNA-1:exon:13787;Parent=Msa0552680-mRNA-1 |
| chr4_1 | exon | 49343246 | 49343542 | 49343246 | ID=Msa0552680-mRNA-1:exon:13788;Parent=Msa0552680-mRNA-1 |
| chr4_1 | five_prime_UTR | 49338039 | 49338078 | 49338039 | ID=Msa0552680-mRNA-1:five_prime_utr;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49338079 | 49338081 | 49338079 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49338270 | 49338407 | 49338270 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49339747 | 49339977 | 49339747 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49341477 | 49341569 | 49341477 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49341648 | 49341835 | 49341648 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49342371 | 49342564 | 49342371 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | CDS | 49343246 | 49343385 | 49343246 | ID=Msa0552680-mRNA-1:cds;Parent=Msa0552680-mRNA-1 |
| chr4_1 | three_prime_UTR | 49343386 | 49343542 | 49343386 | ID=Msa0552680-mRNA-1:three_prime_utr;Parent=Msa0552680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
