Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841590 | XP_003612880.1 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841590 | sp|Q9FIQ5|TRN2_ARATH | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.18e-127 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841590 | G7KDS1 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0841590 | 0.801330 | 9.476236e-49 | -8.615850e-47 |
| Msa0003080 | Msa0841590 | 0.808933 | 2.427456e-50 | -8.615850e-47 |
| Msa0016040 | Msa0841590 | 0.801876 | 7.320311e-49 | -8.615850e-47 |
| Msa0017670 | Msa0841590 | 0.806518 | 7.910647e-50 | -8.615850e-47 |
| Msa0017930 | Msa0841590 | 0.812988 | 3.212624e-51 | -8.615850e-47 |
| Msa0025160 | Msa0841590 | 0.836340 | 9.908831e-57 | -8.615850e-47 |
| Msa0025580 | Msa0841590 | 0.807534 | 4.823166e-50 | -8.615850e-47 |
| Msa0027280 | Msa0841590 | 0.821201 | 4.579932e-53 | -8.615850e-47 |
| Msa0034210 | Msa0841590 | 0.807355 | 5.264668e-50 | -8.615850e-47 |
| Msa0042640 | Msa0841590 | 0.852157 | 5.549658e-61 | -8.615850e-47 |
| Msa0048510 | Msa0841590 | 0.824187 | 9.246240e-54 | -8.615850e-47 |
| Msa0050660 | Msa0841590 | 0.853328 | 2.569605e-61 | -8.615850e-47 |
| Msa0050700 | Msa0841590 | 0.853771 | 1.916968e-61 | -8.615850e-47 |
| Msa0050790 | Msa0841590 | 0.850656 | 1.475092e-60 | -8.615850e-47 |
| Msa0072520 | Msa0841590 | 0.809414 | 1.914292e-50 | -8.615850e-47 |
| Msa0073120 | Msa0841590 | 0.810864 | 9.321929e-51 | -8.615850e-47 |
| Msa0077340 | Msa0841590 | 0.801312 | 9.553629e-49 | -8.615850e-47 |
| Msa0077560 | Msa0841590 | 0.812504 | 4.100224e-51 | -8.615850e-47 |
| Msa0081980 | Msa0841590 | 0.816391 | 5.665909e-52 | -8.615850e-47 |
| Msa0094780 | Msa0841590 | 0.812649 | 3.812795e-51 | -8.615850e-47 |
| Msa0094790 | Msa0841590 | 0.877649 | 5.306649e-69 | -8.615850e-47 |
| Msa0098040 | Msa0841590 | 0.800588 | 1.343442e-48 | -8.615850e-47 |
| Msa0102240 | Msa0841590 | 0.827334 | 1.657170e-54 | -8.615850e-47 |
| Msa0616210 | Msa0841590 | 0.845066 | 5.121086e-59 | -8.615850e-47 |
| Msa0619710 | Msa0841590 | 0.829651 | 4.569795e-55 | -8.615850e-47 |
| Msa0621710 | Msa0841590 | 0.814634 | 1.393864e-51 | -8.615850e-47 |
| Msa0644410 | Msa0841590 | 0.816609 | 5.063146e-52 | -8.615850e-47 |
| Msa0655700 | Msa0841590 | 0.822739 | 2.015929e-53 | -8.615850e-47 |
| Msa0657700 | Msa0841590 | 0.821955 | 3.066168e-53 | -8.615850e-47 |
| Msa0666700 | Msa0841590 | 0.801626 | 8.239310e-49 | -8.615850e-47 |
| Msa0675330 | Msa0841590 | 0.853782 | 1.902777e-61 | -8.615850e-47 |
| Msa0687090 | Msa0841590 | 0.802638 | 5.101237e-49 | -8.615850e-47 |
| Msa0693890 | Msa0841590 | 0.830029 | 3.696254e-55 | -8.615850e-47 |
| Msa0699540 | Msa0841590 | 0.853230 | 2.741955e-61 | -8.615850e-47 |
| Msa0702810 | Msa0841590 | 0.817162 | 3.804313e-52 | -8.615850e-47 |
| Msa0706150 | Msa0841590 | 0.831087 | 2.035988e-55 | -8.615850e-47 |
| Msa0720410 | Msa0841590 | 0.886163 | 4.342812e-72 | -8.615850e-47 |
| Msa0722220 | Msa0841590 | 0.805749 | 1.148622e-49 | -8.615850e-47 |
| Msa0723090 | Msa0841590 | 0.803870 | 2.835362e-49 | -8.615850e-47 |
| Msa0734250 | Msa0841590 | 0.818890 | 1.547765e-52 | -8.615850e-47 |
| Msa0735780 | Msa0841590 | 0.813274 | 2.780333e-51 | -8.615850e-47 |
| Msa0743440 | Msa0841590 | 0.805896 | 1.069897e-49 | -8.615850e-47 |
| Msa0754450 | Msa0841590 | 0.806746 | 7.080590e-50 | -8.615850e-47 |
| Msa0755930 | Msa0841590 | 0.806416 | 8.314782e-50 | -8.615850e-47 |
| Msa0760970 | Msa0841590 | 0.990747 | 3.996650e-184 | -8.615850e-47 |
| Msa0773630 | Msa0841590 | 0.805660 | 1.198984e-49 | -8.615850e-47 |
| Msa0792370 | Msa0841590 | 0.837866 | 4.036876e-57 | -8.615850e-47 |
| Msa0803250 | Msa0841590 | 0.948976 | 3.227252e-107 | -8.615850e-47 |
| Msa0815970 | Msa0841590 | 0.817392 | 3.377824e-52 | -8.615850e-47 |
| Msa0828970 | Msa0841590 | 0.818265 | 2.144959e-52 | -8.615850e-47 |
| Msa0841590 | Msa0859290 | 0.806629 | 7.495311e-50 | -8.615850e-47 |
| Msa0841590 | Msa0863620 | 0.812634 | 3.840874e-51 | -8.615850e-47 |
| Msa0841590 | Msa0931590 | 0.814416 | 1.557676e-51 | -8.615850e-47 |
| Msa0841590 | Msa1009950 | 0.807421 | 5.097790e-50 | -8.615850e-47 |
| Msa0841590 | Msa1021590 | 0.827731 | 1.330465e-54 | -8.615850e-47 |
| Msa0841590 | Msa1029530 | 0.810223 | 1.282431e-50 | -8.615850e-47 |
| Msa0841590 | Msa1042160 | 0.805210 | 1.490000e-49 | -8.615850e-47 |
| Msa0841590 | Msa1042190 | 0.810714 | 1.004939e-50 | -8.615850e-47 |
| Msa0841590 | Msa1044680 | 0.805357 | 1.388168e-49 | -8.615850e-47 |
| Msa0841590 | Msa1059020 | 0.812708 | 3.701049e-51 | -8.615850e-47 |
| Msa0841590 | Msa1078820 | 0.842292 | 2.826273e-58 | -8.615850e-47 |
| Msa0841590 | Msa1081690 | 0.825934 | 3.575818e-54 | -8.615850e-47 |
| Msa0841590 | Msa1105640 | 0.815027 | 1.141082e-51 | -8.615850e-47 |
| Msa0841590 | Msa1123210 | 0.838120 | 3.472601e-57 | -8.615850e-47 |
| Msa0841590 | Msa1123970 | 0.843210 | 1.611391e-58 | -8.615850e-47 |
| Msa0841590 | Msa1148960 | 0.805665 | 1.196086e-49 | -8.615850e-47 |
| Msa0841590 | Msa1166190 | 0.804297 | 2.311403e-49 | -8.615850e-47 |
| Msa0841590 | Msa1166290 | 0.800061 | 1.719412e-48 | -8.615850e-47 |
| Msa0841590 | Msa1167470 | 0.809192 | 2.136348e-50 | -8.615850e-47 |
| Msa0841590 | Msa1169650 | 0.838723 | 2.427102e-57 | -8.615850e-47 |
| Msa0841590 | Msa1184890 | 0.846733 | 1.804108e-59 | -8.615850e-47 |
| Msa0841590 | Msa1192560 | 0.878327 | 3.072829e-69 | -8.615850e-47 |
| Msa0841590 | Msa1192590 | 0.878947 | 1.858520e-69 | -8.615850e-47 |
| Msa0841590 | Msa1194240 | 0.801631 | 8.221283e-49 | -8.615850e-47 |
| Msa0841590 | Msa1214350 | 0.810448 | 1.147106e-50 | -8.615850e-47 |
| Msa0841590 | Msa1221120 | 0.806902 | 6.563041e-50 | -8.615850e-47 |
| Msa0841590 | Msa1228580 | 0.822829 | 1.921664e-53 | -8.615850e-47 |
| Msa0841590 | Msa1228630 | 0.814444 | 1.535875e-51 | -8.615850e-47 |
| Msa0841590 | Msa1244240 | 0.805976 | 1.029314e-49 | -8.615850e-47 |
| Msa0841590 | Msa1263780 | 0.811840 | 5.725634e-51 | -8.615850e-47 |
| Msa0841590 | Msa1265450 | 0.816266 | 6.042575e-52 | -8.615850e-47 |
| Msa0841590 | Msa1300460 | 0.808346 | 3.240484e-50 | -8.615850e-47 |
| Msa0841590 | Msa1303560 | 0.803313 | 3.700250e-49 | -8.615850e-47 |
| Msa0841590 | Msa1303650 | 0.808844 | 2.536468e-50 | -8.615850e-47 |
| Msa0841590 | Msa1308850 | 0.801688 | 8.000978e-49 | -8.615850e-47 |
| Msa0841590 | Msa1315160 | 0.801996 | 6.916480e-49 | -8.615850e-47 |
| Msa0841590 | Msa1343170 | 0.804262 | 2.350889e-49 | -8.615850e-47 |
| Msa0841590 | Msa1343180 | 0.805169 | 1.519627e-49 | -8.615850e-47 |
| Msa0841590 | Msa1368750 | 0.810543 | 1.094116e-50 | -8.615850e-47 |
| Msa0841590 | Msa1372040 | 0.835930 | 1.259719e-56 | -8.615850e-47 |
| Msa0841590 | Msa1374790 | 0.814775 | 1.297318e-51 | -8.615850e-47 |
| Msa0841590 | Msa1382300 | 0.828846 | 7.164972e-55 | -8.615850e-47 |
| Msa0841590 | Msa1384150 | 0.820441 | 6.848284e-53 | -8.615850e-47 |
| Msa0841590 | Msa1393780 | 0.824544 | 7.620574e-54 | -8.615850e-47 |
| Msa0841590 | Msa1405460 | 0.820330 | 7.262718e-53 | -8.615850e-47 |
| Msa0841590 | Msa1409410 | 0.837311 | 5.602158e-57 | -8.615850e-47 |
| Msa0841590 | Msa1410160 | 0.808279 | 3.348628e-50 | -8.615850e-47 |
| Msa0841590 | Msa1415540 | 0.850163 | 2.027931e-60 | -8.615850e-47 |
| Msa0841590 | Msa1417370 | 0.825983 | 3.480300e-54 | -8.615850e-47 |
| Msa0841590 | Msa1427100 | 0.837530 | 4.923631e-57 | -8.615850e-47 |
| Msa0841590 | Msa1429070 | 0.804009 | 2.652817e-49 | -8.615850e-47 |
| Msa0841590 | Msa1431480 | 0.804374 | 2.227222e-49 | -8.615850e-47 |
| Msa0841590 | Msa1435960 | 0.840925 | 6.483213e-58 | -8.615850e-47 |
| Msa0841590 | Msa1440630 | 0.849207 | 3.748853e-60 | -8.615850e-47 |
| Msa0841590 | Msa1451820 | 0.815465 | 9.116522e-52 | -8.615850e-47 |
| Msa0841590 | Msa1452140 | 0.803972 | 2.700834e-49 | -8.615850e-47 |
| Msa0121330 | Msa0841590 | 0.824286 | 8.763417e-54 | -8.615850e-47 |
| Msa0123070 | Msa0841590 | 0.833241 | 5.970424e-56 | -8.615850e-47 |
| Msa0125360 | Msa0841590 | 0.800230 | 1.588826e-48 | -8.615850e-47 |
| Msa0128310 | Msa0841590 | 0.808532 | 2.957290e-50 | -8.615850e-47 |
| Msa0140130 | Msa0841590 | 0.850447 | 1.688330e-60 | -8.615850e-47 |
| Msa0140280 | Msa0841590 | 0.826696 | 2.353923e-54 | -8.615850e-47 |
| Msa0143670 | Msa0841590 | 0.813509 | 2.469145e-51 | -8.615850e-47 |
| Msa0146650 | Msa0841590 | 0.817160 | 3.807641e-52 | -8.615850e-47 |
| Msa0161930 | Msa0841590 | 0.829675 | 4.508386e-55 | -8.615850e-47 |
| Msa0174290 | Msa0841590 | 0.819657 | 1.034920e-52 | -8.615850e-47 |
| Msa0174440 | Msa0841590 | 0.809982 | 1.445198e-50 | -8.615850e-47 |
| Msa0176060 | Msa0841590 | 0.806917 | 6.516312e-50 | -8.615850e-47 |
| Msa0178450 | Msa0841590 | 0.838573 | 2.653956e-57 | -8.615850e-47 |
| Msa0188610 | Msa0841590 | 0.834155 | 3.528660e-56 | -8.615850e-47 |
| Msa0200050 | Msa0841590 | 0.808688 | 2.739440e-50 | -8.615850e-47 |
| Msa0203080 | Msa0841590 | 0.814368 | 1.596712e-51 | -8.615850e-47 |
| Msa0230800 | Msa0841590 | 0.829530 | 4.890008e-55 | -8.615850e-47 |
| Msa0230870 | Msa0841590 | 0.827126 | 1.858658e-54 | -8.615850e-47 |
| Msa0232760 | Msa0841590 | 0.815776 | 7.774441e-52 | -8.615850e-47 |
| Msa0367690 | Msa0841590 | 0.846908 | 1.615520e-59 | -8.615850e-47 |
| Msa0380670 | Msa0841590 | 0.818275 | 2.134470e-52 | -8.615850e-47 |
| Msa0415450 | Msa0841590 | 0.851876 | 6.667231e-61 | -8.615850e-47 |
| Msa0426530 | Msa0841590 | 0.802343 | 5.868505e-49 | -8.615850e-47 |
| Msa0430300 | Msa0841590 | 0.813593 | 2.365790e-51 | -8.615850e-47 |
| Msa0432010 | Msa0841590 | 0.813003 | 3.188417e-51 | -8.615850e-47 |
| Msa0436910 | Msa0841590 | 0.806530 | 7.867861e-50 | -8.615850e-47 |
| Msa0457570 | Msa0841590 | 0.825942 | 3.559187e-54 | -8.615850e-47 |
| Msa0460070 | Msa0841590 | 0.843863 | 1.078419e-58 | -8.615850e-47 |
| Msa0270340 | Msa0841590 | 0.829481 | 5.024567e-55 | -8.615850e-47 |
| Msa0284800 | Msa0841590 | 0.850474 | 1.658986e-60 | -8.615850e-47 |
| Msa0307670 | Msa0841590 | 0.835369 | 1.747107e-56 | -8.615850e-47 |
| Msa0330520 | Msa0841590 | 0.853620 | 2.119241e-61 | -8.615850e-47 |
| Msa0338340 | Msa0841590 | 0.802335 | 5.889601e-49 | -8.615850e-47 |
| Msa0517250 | Msa0841590 | 0.825069 | 5.731376e-54 | -8.615850e-47 |
| Msa0519750 | Msa0841590 | 0.836602 | 8.498915e-57 | -8.615850e-47 |
| Msa0519820 | Msa0841590 | 0.838928 | 2.148382e-57 | -8.615850e-47 |
| Msa0519830 | Msa0841590 | 0.834261 | 3.319574e-56 | -8.615850e-47 |
| Msa0520870 | Msa0841590 | 0.809338 | 1.988267e-50 | -8.615850e-47 |
| Msa0528570 | Msa0841590 | 0.850412 | 1.726611e-60 | -8.615850e-47 |
| Msa0529030 | Msa0841590 | 0.821006 | 5.077405e-53 | -8.615850e-47 |
| Msa0541300 | Msa0841590 | 0.862895 | 3.665373e-64 | -8.615850e-47 |
| Msa0541310 | Msa0841590 | 0.862316 | 5.523041e-64 | -8.615850e-47 |
| Msa0562350 | Msa0841590 | 0.807752 | 4.336099e-50 | -8.615850e-47 |
| Msa0570010 | Msa0841590 | 0.825413 | 4.751961e-54 | -8.615850e-47 |
| Msa0580810 | Msa0841590 | 0.832205 | 1.079809e-55 | -8.615850e-47 |
| Msa0585020 | Msa0841590 | 0.851030 | 1.156975e-60 | -8.615850e-47 |
| Msa0597270 | Msa0841590 | 0.860838 | 1.562646e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841590 | MtrunA17_Chr5g0411131 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Msa0841590 | MtrunA17_Chr8g0366571 | 75.093 | 269 | 67 | 0 | 1 | 269 | 1 | 269 | 2.20e-151 | 423 |
| Msa0841590 | MtrunA17_Chr8g0389221 | 50.373 | 268 | 133 | 0 | 1 | 268 | 1 | 268 | 6.46e-100 | 293 |
| Msa0841590 | MtrunA17_Chr4g0030021 | 45.956 | 272 | 141 | 3 | 1 | 266 | 1 | 272 | 1.67e-78 | 239 |
| Msa0841590 | MtrunA17_Chr4g0073251 | 45.318 | 267 | 142 | 3 | 1 | 264 | 1 | 266 | 3.02e-76 | 232 |
| Msa0841590 | MtrunA17_Chr1g0199961 | 41.445 | 263 | 144 | 3 | 4 | 266 | 5 | 257 | 1.64e-66 | 208 |
| Msa0841590 | MtrunA17_Chr6g0462061 | 41.016 | 256 | 141 | 3 | 4 | 259 | 5 | 250 | 1.79e-66 | 208 |
| Msa0841590 | MtrunA17_Chr8g0386471 | 32.171 | 258 | 169 | 3 | 1 | 255 | 3 | 257 | 3.04e-55 | 179 |
| Msa0841590 | MtrunA17_Chr4g0062101 | 34.231 | 260 | 168 | 2 | 3 | 259 | 6 | 265 | 5.47e-54 | 176 |
| Msa0841590 | MtrunA17_Chr5g0447681 | 28.458 | 253 | 155 | 6 | 5 | 252 | 50 | 281 | 1.08e-29 | 114 |
| Msa0841590 | MtrunA17_Chr2g0307641 | 37.662 | 77 | 46 | 1 | 182 | 256 | 3 | 79 | 4.03e-16 | 72.0 |
| Msa0841590 | MtrunA17_Chr2g0307651 | 27.564 | 156 | 112 | 1 | 3 | 158 | 4 | 158 | 3.56e-13 | 66.2 |
| Msa0841590 | MtrunA17_Chr5g0447671 | 29.771 | 131 | 68 | 4 | 118 | 243 | 47 | 158 | 1.31e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841590 | AT5G46700.1 | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.21e-128 | 365 |
| Msa0841590 | AT2G19580.1 | 57.249 | 269 | 114 | 1 | 1 | 268 | 1 | 269 | 1.72e-100 | 295 |
| Msa0841590 | AT3G45600.1 | 44.528 | 265 | 141 | 3 | 1 | 259 | 1 | 265 | 1.82e-81 | 247 |
| Msa0841590 | AT4G28050.1 | 42.636 | 258 | 146 | 1 | 4 | 259 | 5 | 262 | 4.43e-78 | 237 |
| Msa0841590 | AT4G30430.1 | 41.603 | 262 | 151 | 1 | 3 | 262 | 4 | 265 | 2.43e-76 | 233 |
| Msa0841590 | AT2G23810.1 | 42.966 | 263 | 147 | 2 | 4 | 263 | 5 | 267 | 3.22e-76 | 233 |
| Msa0841590 | AT5G60220.1 | 43.893 | 262 | 141 | 3 | 1 | 256 | 1 | 262 | 2.11e-63 | 202 |
| Msa0841590 | AT1G18520.1 | 38.550 | 262 | 153 | 4 | 3 | 257 | 4 | 264 | 5.32e-61 | 194 |
| Msa0841590 | AT3G12090.1 | 40.316 | 253 | 139 | 4 | 4 | 256 | 5 | 245 | 1.33e-58 | 188 |
| Msa0841590 | AT4G23410.1 | 37.066 | 259 | 152 | 3 | 3 | 261 | 4 | 251 | 3.23e-55 | 179 |
| Msa0841590 | AT1G63260.2 | 32.171 | 258 | 167 | 3 | 1 | 257 | 3 | 253 | 2.83e-54 | 176 |
| Msa0841590 | AT1G63260.6 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.47e-51 | 169 |
| Msa0841590 | AT1G63260.1 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.47e-51 | 169 |
| Msa0841590 | AT1G63260.3 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 4.55e-51 | 169 |
| Msa0841590 | AT1G63260.5 | 32.719 | 217 | 144 | 2 | 1 | 216 | 3 | 218 | 3.59e-46 | 154 |
| Msa0841590 | AT3G45600.2 | 43.275 | 171 | 92 | 2 | 1 | 166 | 1 | 171 | 3.08e-43 | 146 |
| Msa0841590 | AT2G03840.1 | 29.707 | 239 | 160 | 4 | 19 | 251 | 32 | 268 | 1.45e-37 | 134 |
| Msa0841590 | AT1G63260.4 | 30.337 | 178 | 123 | 1 | 1 | 178 | 3 | 179 | 2.28e-33 | 121 |
| Msa0841590 | AT5G23030.1 | 27.132 | 258 | 183 | 2 | 1 | 256 | 2 | 256 | 3.00e-31 | 117 |
| Msa0841590 | AT5G57810.1 | 26.316 | 133 | 82 | 1 | 131 | 247 | 173 | 305 | 4.51e-16 | 77.0 |
Find 48 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTAATAGGGCTTATT+TGG | 0.104253 | 5_4:+18029226 | Msa0841590:CDS |
| CTGGTCTCATTGGTTCCTTT+TGG | 0.214283 | 5_4:+18029090 | Msa0841590:CDS |
| CTCTTAGTTGTGTCTCTTGC+TGG | 0.223492 | 5_4:+18029071 | Msa0841590:CDS |
| ATGTCTGCTGCATTGTTTAT+TGG | 0.243435 | 5_4:-18029809 | None:intergenic |
| TATTATCTTGCTAGTTTGTT+TGG | 0.252856 | 5_4:+18029160 | Msa0841590:CDS |
| TAGCAACTAGGTAGAATATT+AGG | 0.309164 | 5_4:-18029127 | None:intergenic |
| TATTCCAAATAAGCCCTATT+AGG | 0.318593 | 5_4:-18029230 | None:intergenic |
| TTAATTGTGGTTTATTTGAT+TGG | 0.318944 | 5_4:+18029965 | Msa0841590:CDS |
| TTTAACATTGGTGATGAAAT+TGG | 0.322140 | 5_4:+18030093 | Msa0841590:three_prime_UTR |
| CAATCATTGGTGCTGGAATC+TGG | 0.324358 | 5_4:+18028979 | Msa0841590:CDS |
| ATGGTATGATTGAACCTAAT+AGG | 0.329364 | 5_4:+18029216 | Msa0841590:CDS |
| GCGAAAGAGATCCTCAGTTT+TGG | 0.353207 | 5_4:-18030008 | None:intergenic |
| GTGTCTCTTGCTGGTCTCAT+TGG | 0.354014 | 5_4:+18029080 | Msa0841590:CDS |
| GGCTTATTTGGAATACCGTT+TGG | 0.361064 | 5_4:+18029238 | Msa0841590:CDS |
| CTGGTTTGTTGGCAAATCTT+AGG | 0.375317 | 5_4:+18029894 | Msa0841590:CDS |
| CATTTGTGAACCCAACATAC+TGG | 0.397625 | 5_4:+18029780 | Msa0841590:CDS |
| TTGGACTAATCCAGTATGTT+GGG | 0.406980 | 5_4:-18029790 | None:intergenic |
| CAGATTCCAGCACCAATGAT+TGG | 0.408669 | 5_4:-18028978 | None:intergenic |
| AGTTGTAACAAAGTTGTGTT+TGG | 0.428684 | 5_4:-18029856 | None:intergenic |
| AGATTCCAGCACCAATGATT+GGG | 0.447069 | 5_4:-18028977 | None:intergenic |
| TGGTATGATTGAACCTAATA+GGG | 0.447157 | 5_4:+18029217 | Msa0841590:CDS |
| AACTGTGACTCATGCAAAGC+TGG | 0.452176 | 5_4:+18029875 | Msa0841590:CDS |
| GCAATGAGCAACAACATCAT+AGG | 0.463723 | 5_4:+18028921 | Msa0841590:CDS |
| ATTGGACTAATCCAGTATGT+TGG | 0.468680 | 5_4:-18029791 | None:intergenic |
| GTGTACATGGTTACTCTTCG+TGG | 0.469403 | 5_4:+18029191 | Msa0841590:CDS |
| ATCCTCTCAATCCCAATCAT+TGG | 0.477309 | 5_4:+18028966 | Msa0841590:CDS |
| CTCATGCAAAGCTGGTTTGT+TGG | 0.480759 | 5_4:+18029883 | Msa0841590:CDS |
| TCAATCCCAATCATTGGTGC+TGG | 0.481205 | 5_4:+18028972 | Msa0841590:CDS |
| CAGACATGGATTGTCTTCAA+TGG | 0.495893 | 5_4:+18029825 | Msa0841590:CDS |
| CAATGGCCAGTCATAATCCT+AGG | 0.501117 | 5_4:+18029041 | Msa0841590:CDS |
| TTGAGAGGATTACAGCTACT+AGG | 0.501297 | 5_4:-18028953 | None:intergenic |
| ATGGTTACTCTTCGTGGTCA+TGG | 0.501755 | 5_4:+18029197 | Msa0841590:CDS |
| TGGCAAATCTTAGGAAGGAA+TGG | 0.515362 | 5_4:+18029903 | Msa0841590:CDS |
| GAGACATGAGATTCTCCAAA+AGG | 0.523414 | 5_4:-18029105 | None:intergenic |
| CACCAATGATTGGGATTGAG+AGG | 0.525563 | 5_4:-18028968 | None:intergenic |
| AGCATGTAAGATGTAAAGCT+TGG | 0.526590 | 5_4:+18030066 | Msa0841590:three_prime_UTR |
| GTGTATGCACATTGTGTTGG+TGG | 0.546354 | 5_4:-18029758 | None:intergenic |
| TGCACGTCTTACACCAATGC+AGG | 0.553446 | 5_4:+18029394 | Msa0841590:CDS |
| AATAAACAATGCAGCAGACA+TGG | 0.558636 | 5_4:+18029811 | Msa0841590:CDS |
| TTTGTTGGCAAATCTTAGGA+AGG | 0.565313 | 5_4:+18029898 | Msa0841590:CDS |
| CTCTTTCGCAAGTACAAACA+AGG | 0.567497 | 5_4:+18030022 | Msa0841590:CDS |
| CTAGGATTATGACTGGCCAT+TGG | 0.581862 | 5_4:-18029040 | None:intergenic |
| CATGTGTAAAATTTCTCCAA+TGG | 0.584274 | 5_4:+18029024 | Msa0841590:CDS |
| TAAGCACAAGCATAGCAACT+AGG | 0.591892 | 5_4:-18029139 | None:intergenic |
| AGAACACCTAGGATTATGAC+TGG | 0.617019 | 5_4:-18029047 | None:intergenic |
| AATGTGTATGCACATTGTGT+TGG | 0.656084 | 5_4:-18029761 | None:intergenic |
| CAACTAAGAGAAGAACACCT+AGG | 0.686330 | 5_4:-18029058 | None:intergenic |
| CTTAGTGAAACAAATATGTG+TGG | 0.704201 | 5_4:+18029329 | Msa0841590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATTACCTGCAT+TGG | - | chr5_4:18029410-18029429 | None:intergenic | 20.0% |
| !! | TTAAAGGGGAAAAAAATTAT+TGG | - | chr5_4:18029712-18029731 | None:intergenic | 20.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5_4:18029726-18029745 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5_4:18029727-18029746 | None:intergenic | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5_4:18029726-18029745 | Msa0841590:intron | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5_4:18029965-18029984 | Msa0841590:CDS | 20.0% |
| !! | TAAAAAAAAATTACCTGCAT+TGG | - | chr5_4:18029410-18029429 | None:intergenic | 20.0% |
| !! | TTAAAGGGGAAAAAAATTAT+TGG | - | chr5_4:18029712-18029731 | None:intergenic | 20.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5_4:18029726-18029745 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5_4:18029727-18029746 | None:intergenic | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5_4:18029726-18029745 | Msa0841590:intron | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5_4:18029965-18029984 | Msa0841590:CDS | 20.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5_4:18029160-18029179 | Msa0841590:CDS | 25.0% |
| !!! | TTTGGTTATTTTTGTGTACA+TGG | + | chr5_4:18029178-18029197 | Msa0841590:CDS | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5_4:18029289-18029308 | Msa0841590:CDS | 25.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5_4:18029728-18029747 | None:intergenic | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5_4:18029725-18029744 | Msa0841590:intron | 25.0% |
| !!! | TTTAACATTGGTGATGAAAT+TGG | + | chr5_4:18030093-18030112 | Msa0841590:three_prime_UTR | 25.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5_4:18029160-18029179 | Msa0841590:CDS | 25.0% |
| !!! | TTTGGTTATTTTTGTGTACA+TGG | + | chr5_4:18029178-18029197 | Msa0841590:CDS | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5_4:18029289-18029308 | Msa0841590:CDS | 25.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5_4:18029728-18029747 | None:intergenic | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5_4:18029725-18029744 | Msa0841590:intron | 25.0% |
| !!! | TTTAACATTGGTGATGAAAT+TGG | + | chr5_4:18030093-18030112 | Msa0841590:three_prime_UTR | 25.0% |
| CATGTGTAAAATTTCTCCAA+TGG | + | chr5_4:18029024-18029043 | Msa0841590:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5_4:18029130-18029149 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5_4:18029216-18029235 | Msa0841590:CDS | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5_4:18029217-18029236 | Msa0841590:CDS | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5_4:18029233-18029252 | None:intergenic | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5_4:18029288-18029307 | Msa0841590:CDS | 30.0% |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5_4:18029329-18029348 | Msa0841590:CDS | 30.0% | |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5_4:18029355-18029374 | Msa0841590:CDS | 30.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5_4:18029859-18029878 | None:intergenic | 30.0% | |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5_4:18029952-18029971 | Msa0841590:CDS | 30.0% |
| CATGTGTAAAATTTCTCCAA+TGG | + | chr5_4:18029024-18029043 | Msa0841590:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5_4:18029130-18029149 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5_4:18029216-18029235 | Msa0841590:CDS | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5_4:18029217-18029236 | Msa0841590:CDS | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5_4:18029233-18029252 | None:intergenic | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5_4:18029288-18029307 | Msa0841590:CDS | 30.0% |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5_4:18029329-18029348 | Msa0841590:CDS | 30.0% | |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5_4:18029355-18029374 | Msa0841590:CDS | 30.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5_4:18029859-18029878 | None:intergenic | 30.0% | |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5_4:18029952-18029971 | Msa0841590:CDS | 30.0% |
| ! | AATTTTACACATGTGTCTGC+TGG | - | chr5_4:18029017-18029036 | None:intergenic | 35.0% |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5_4:18029226-18029245 | Msa0841590:CDS | 35.0% | |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5_4:18029251-18029270 | Msa0841590:CDS | 35.0% |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5_4:18029252-18029271 | Msa0841590:CDS | 35.0% |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5_4:18029256-18029275 | None:intergenic | 35.0% | |
| !! | GATCTGTTTCTAGTTTCACT+CGG | - | chr5_4:18029469-18029488 | None:intergenic | 35.0% |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5_4:18029499-18029518 | Msa0841590:intron | 35.0% | |
| !! | TGGAAGTGTGTTTCTCTTTT+AGG | + | chr5_4:18029549-18029568 | Msa0841590:intron | 35.0% |
| AATGTGTATGCACATTGTGT+TGG | - | chr5_4:18029764-18029783 | None:intergenic | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5_4:18029793-18029812 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5_4:18029794-18029813 | None:intergenic | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5_4:18029812-18029831 | None:intergenic | 35.0% | |
| AATAAACAATGCAGCAGACA+TGG | + | chr5_4:18029811-18029830 | Msa0841590:CDS | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5_4:18029898-18029917 | Msa0841590:CDS | 35.0% | |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5_4:18029981-18030000 | Msa0841590:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5_4:18029997-18030016 | Msa0841590:CDS | 35.0% |
| AGCATGTAAGATGTAAAGCT+TGG | + | chr5_4:18030066-18030085 | Msa0841590:three_prime_UTR | 35.0% | |
| !!! | AAGCTTGGTGCTTTTAACAT+TGG | + | chr5_4:18030081-18030100 | Msa0841590:three_prime_UTR | 35.0% |
| ! | AATTTTACACATGTGTCTGC+TGG | - | chr5_4:18029017-18029036 | None:intergenic | 35.0% |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5_4:18029226-18029245 | Msa0841590:CDS | 35.0% | |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5_4:18029251-18029270 | Msa0841590:CDS | 35.0% |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5_4:18029252-18029271 | Msa0841590:CDS | 35.0% |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5_4:18029256-18029275 | None:intergenic | 35.0% | |
| !! | GATCTGTTTCTAGTTTCACT+CGG | - | chr5_4:18029469-18029488 | None:intergenic | 35.0% |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5_4:18029499-18029518 | Msa0841590:intron | 35.0% | |
| !! | TGGAAGTGTGTTTCTCTTTT+AGG | + | chr5_4:18029549-18029568 | Msa0841590:intron | 35.0% |
| AATGTGTATGCACATTGTGT+TGG | - | chr5_4:18029764-18029783 | None:intergenic | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5_4:18029793-18029812 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5_4:18029794-18029813 | None:intergenic | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5_4:18029812-18029831 | None:intergenic | 35.0% | |
| AATAAACAATGCAGCAGACA+TGG | + | chr5_4:18029811-18029830 | Msa0841590:CDS | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5_4:18029898-18029917 | Msa0841590:CDS | 35.0% | |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5_4:18029981-18030000 | Msa0841590:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5_4:18029997-18030016 | Msa0841590:CDS | 35.0% |
| AGCATGTAAGATGTAAAGCT+TGG | + | chr5_4:18030066-18030085 | Msa0841590:three_prime_UTR | 35.0% | |
| !!! | AAGCTTGGTGCTTTTAACAT+TGG | + | chr5_4:18030081-18030100 | Msa0841590:three_prime_UTR | 35.0% |
| GCAATGAGCAACAACATCAT+AGG | + | chr5_4:18028921-18028940 | Msa0841590:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5_4:18028956-18028975 | None:intergenic | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5_4:18028966-18028985 | Msa0841590:CDS | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5_4:18028980-18028999 | None:intergenic | 40.0% | |
| AGAACACCTAGGATTATGAC+TGG | - | chr5_4:18029050-18029069 | None:intergenic | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5_4:18029061-18029080 | None:intergenic | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5_4:18029108-18029127 | None:intergenic | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5_4:18029142-18029161 | None:intergenic | 40.0% | |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5_4:18029238-18029257 | Msa0841590:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5_4:18029361-18029380 | Msa0841590:CDS | 40.0% |
| !! | GGTGACATTGACTTGAAATC+TGG | + | chr5_4:18029529-18029548 | Msa0841590:intron | 40.0% |
| !! | GTGTTTCTCTTTTAGGTCTC+AGG | + | chr5_4:18029556-18029575 | Msa0841590:intron | 40.0% |
| !! | TTCTCTTTTAGGTCTCAGGT+TGG | + | chr5_4:18029560-18029579 | Msa0841590:intron | 40.0% |
| CATTTGTGAACCCAACATAC+TGG | + | chr5_4:18029780-18029799 | Msa0841590:CDS | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5_4:18029825-18029844 | Msa0841590:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5_4:18029894-18029913 | Msa0841590:CDS | 40.0% |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5_4:18029903-18029922 | Msa0841590:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5_4:18030022-18030041 | Msa0841590:CDS | 40.0% | |
| GCAATGAGCAACAACATCAT+AGG | + | chr5_4:18028921-18028940 | Msa0841590:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5_4:18028956-18028975 | None:intergenic | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5_4:18028966-18028985 | Msa0841590:CDS | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5_4:18028980-18028999 | None:intergenic | 40.0% | |
| AGAACACCTAGGATTATGAC+TGG | - | chr5_4:18029050-18029069 | None:intergenic | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5_4:18029061-18029080 | None:intergenic | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5_4:18029108-18029127 | None:intergenic | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5_4:18029142-18029161 | None:intergenic | 40.0% | |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5_4:18029238-18029257 | Msa0841590:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5_4:18029361-18029380 | Msa0841590:CDS | 40.0% |
| !! | GGTGACATTGACTTGAAATC+TGG | + | chr5_4:18029529-18029548 | Msa0841590:intron | 40.0% |
| !! | GTGTTTCTCTTTTAGGTCTC+AGG | + | chr5_4:18029556-18029575 | Msa0841590:intron | 40.0% |
| !! | TTCTCTTTTAGGTCTCAGGT+TGG | + | chr5_4:18029560-18029579 | Msa0841590:intron | 40.0% |
| CATTTGTGAACCCAACATAC+TGG | + | chr5_4:18029780-18029799 | Msa0841590:CDS | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5_4:18029825-18029844 | Msa0841590:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5_4:18029894-18029913 | Msa0841590:CDS | 40.0% |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5_4:18029903-18029922 | Msa0841590:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5_4:18030022-18030041 | Msa0841590:CDS | 40.0% | |
| CACCAATGATTGGGATTGAG+AGG | - | chr5_4:18028971-18028990 | None:intergenic | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5_4:18028972-18028991 | Msa0841590:CDS | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5_4:18028981-18029000 | None:intergenic | 45.0% | |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5_4:18028979-18028998 | Msa0841590:CDS | 45.0% |
| ! | CTAGGATTATGACTGGCCAT+TGG | - | chr5_4:18029043-18029062 | None:intergenic | 45.0% |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5_4:18029041-18029060 | Msa0841590:CDS | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5_4:18029071-18029090 | Msa0841590:CDS | 45.0% | |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5_4:18029090-18029109 | Msa0841590:CDS | 45.0% |
| GTGTACATGGTTACTCTTCG+TGG | + | chr5_4:18029191-18029210 | Msa0841590:CDS | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5_4:18029197-18029216 | Msa0841590:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5_4:18029503-18029522 | Msa0841590:intron | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5_4:18029761-18029780 | None:intergenic | 45.0% | |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5_4:18029875-18029894 | Msa0841590:CDS | 45.0% | |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5_4:18029883-18029902 | Msa0841590:CDS | 45.0% |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5_4:18030011-18030030 | None:intergenic | 45.0% |
| CACCAATGATTGGGATTGAG+AGG | - | chr5_4:18028971-18028990 | None:intergenic | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5_4:18028972-18028991 | Msa0841590:CDS | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5_4:18028981-18029000 | None:intergenic | 45.0% | |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5_4:18028979-18028998 | Msa0841590:CDS | 45.0% |
| ! | CTAGGATTATGACTGGCCAT+TGG | - | chr5_4:18029043-18029062 | None:intergenic | 45.0% |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5_4:18029041-18029060 | Msa0841590:CDS | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5_4:18029071-18029090 | Msa0841590:CDS | 45.0% | |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5_4:18029090-18029109 | Msa0841590:CDS | 45.0% |
| GTGTACATGGTTACTCTTCG+TGG | + | chr5_4:18029191-18029210 | Msa0841590:CDS | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5_4:18029197-18029216 | Msa0841590:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5_4:18029503-18029522 | Msa0841590:intron | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5_4:18029761-18029780 | None:intergenic | 45.0% | |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5_4:18029875-18029894 | Msa0841590:CDS | 45.0% | |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5_4:18029883-18029902 | Msa0841590:CDS | 45.0% |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5_4:18030011-18030030 | None:intergenic | 45.0% |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5_4:18029080-18029099 | Msa0841590:CDS | 50.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5_4:18029394-18029413 | Msa0841590:CDS | 50.0% | |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5_4:18029508-18029527 | Msa0841590:intron | 50.0% |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5_4:18029080-18029099 | Msa0841590:CDS | 50.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5_4:18029394-18029413 | Msa0841590:CDS | 50.0% | |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5_4:18029508-18029527 | Msa0841590:intron | 50.0% |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5_4:18029515-18029534 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5_4:18029516-18029535 | None:intergenic | 55.0% | |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5_4:18029515-18029534 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5_4:18029516-18029535 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 18028918 | 18030185 | 18028918 | ID=Msa0841590;Name=Msa0841590 |
| chr5_4 | mRNA | 18028918 | 18030185 | 18028918 | ID=Msa0841590-mRNA-1;Parent=Msa0841590;Name=Msa0841590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|131|269 |
| chr5_4 | exon | 18028918 | 18029415 | 18028918 | ID=Msa0841590-mRNA-1:exon:7594;Parent=Msa0841590-mRNA-1 |
| chr5_4 | exon | 18029743 | 18030185 | 18029743 | ID=Msa0841590-mRNA-1:exon:7595;Parent=Msa0841590-mRNA-1 |
| chr5_4 | CDS | 18028918 | 18029415 | 18028918 | ID=Msa0841590-mRNA-1:cds;Parent=Msa0841590-mRNA-1 |
| chr5_4 | CDS | 18029743 | 18030054 | 18029743 | ID=Msa0841590-mRNA-1:cds;Parent=Msa0841590-mRNA-1 |
| chr5_4 | three_prime_UTR | 18030055 | 18030185 | 18030055 | ID=Msa0841590-mRNA-1:three_prime_utr;Parent=Msa0841590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
